Name: Parafrigoribacterium mesophilum DSM 19442
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7328

Type strain:

Species: Parafrigoribacterium mesophilum

Culture col. no.: DSM 19442, JCM 19547, KCTC 19311, MSL 08

Strain history: <- CJ Kim, KRIBB

NCBI tax ID(s): 433646 (species)

SI-ID 398385

DSM 19442

Section

Parafrigoribacterium mesophilum DSM 19442 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from soil, farming field.

Gram-positive
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Parafrigoribacterium*
	Species	**Parafrigoribacterium mesophilum**
	Full Scientific Name (LPSN)	Parafrigoribacterium mesophilum (Dastager et al. 2008) Kong et al. 2016

Synonym

Frigoribacterium mesophilum

Information on morphological and physiological properties Morphology

[Ref.: #25090]	Gram stain	positive
[Ref.: #32529]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #25090]	Cell shape	rod-shaped
[Ref.: #32529]	Cell shape	rod-shaped

[Ref.: #25090]	Motility	yes
[Ref.: #32529]	Motility	yes

[Ref.: #21407]	Colony color	Beige (1001)
[Ref.: #21407]	Incubation period	10-14 days
[Ref.: #21407]	Cultivation medium used	ISP 2

[Ref.: #21407]	Colony color	Beige (1001)
[Ref.: #21407]	Incubation period	10-14 days
[Ref.: #21407]	Cultivation medium used	ISP 3

[Ref.: #21407]	Colony color	Beige (1001)
[Ref.: #21407]	Incubation period	10-14 days
[Ref.: #21407]	Cultivation medium used	ISP 4

[Ref.: #21407]	Colony color	Beige (1001)
[Ref.: #21407]	Incubation period	10-14 days
[Ref.: #21407]	Cultivation medium used	ISP 5

[Ref.: #21407]	Colony color	Beige (1001)
[Ref.: #21407]	Incubation period	10-14 days
[Ref.: #21407]	Cultivation medium used	ISP 6

[Ref.: #21407]	Colony color	Beige (1001)
[Ref.: #21407]	Incubation period	10-14 days
[Ref.: #21407]	Cultivation medium used	ISP 7

[Ref.: #32529]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8020]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #8020]

Culture medium growth

[Ref.: #8020]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8020]

Culture medium composition

expand / minimize

[Ref.: #21407]

Culture medium

ISP 2

[Ref.: #21407]

Culture medium growth

[Ref.: #21407]

Culture medium composition

expand / minimize

[Ref.: #21407]

Culture medium

ISP 3

[Ref.: #21407]

Culture medium growth

[Ref.: #21407]

Culture medium composition

expand / minimize

[Ref.: #21407]

Culture medium

ISP 4

[Ref.: #21407]

Culture medium growth

[Ref.: #21407]

Culture medium composition

expand / minimize

[Ref.: #21407]

Culture medium

ISP 5

[Ref.: #21407]

Culture medium growth

[Ref.: #21407]

Culture medium composition

expand / minimize

[Ref.: #21407]

Culture medium

ISP 6

[Ref.: #21407]

Culture medium growth

[Ref.: #21407]

Culture medium composition

expand / minimize

[Ref.: #21407]

Culture medium

ISP 7

[Ref.: #21407]

Culture medium growth

[Ref.: #21407]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8020]	growth	28 °C
[Ref.: #32529]	growth	20-28 °C
[Ref.: #32529]	optimum	28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #8020]	Temperature range	mesophilic
[Ref.: #32529]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32529]			optimum	7.3
[Ref.: #32529]			growth	6.5-12

Information on physiology and metabolism Physiology and metabolism

[Ref.: #25090]	Oxygen tolerance	aerobe
[Ref.: #32529]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #25090]	Ability of spore formation	no
[Ref.: #32529]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32529]		NaCl		growth	0-3	%
[Ref.: #32529]		NaCl		optimum	0-3	%

[Ref.: #32529]	Observation	aggregates in chains
[Ref.: #67770]	Observation	quinones: MK-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32529]	arabinose ChEBI	+	carbon source
[Ref.: #32529]	cellobiose ChEBI	+	carbon source
[Ref.: #32529]	galactose ChEBI	+	carbon source
[Ref.: #32529]	glucose ChEBI	+	carbon source
[Ref.: #32529]	maltose ChEBI	+	carbon source
[Ref.: #32529]	mannitol ChEBI	+	carbon source
[Ref.: #32529]	mannose ChEBI	+	carbon source
[Ref.: #32529]	salicin ChEBI	+	carbon source
[Ref.: #32529]	sucrose ChEBI	+	carbon source
[Ref.: #32529]	trehalose ChEBI	+	carbon source
[Ref.: #32529]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32529]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8020]	Sample type/isolated from	soil, farming field
[Ref.: #8020]	Geographic location (country and/or sea, region)	Bigeum Island
[Ref.: #8020]	Country	Republic of Korea
[Ref.: #8020]	Country ISO 3 Code	KOR
[Ref.: #8020]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil from Bigeum Island
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From farming field
[Ref.: #67771]	Geographic location (country and/or sea, region)	Bikeum island
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8020]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8020]	Frigoribacterium mesophilum strain MSL-08 16S ribosomal RNA gene, partial sequence	EF466126	1476	ENA	433646 tax ID

[Ref.: #8020]	GC-content	67.5 mol%
[Ref.: #67770]	GC-content	67.5 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #8020]

Culture collection no.

DSM 19442, JCM 19547, KCTC 19311, MSL 08

[Ref.: #76778]

SI-ID 398385

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Frigoribacterium salinisoli sp. nov., isolated from saline soil, transfer of Frigoribacterium mesophilum to Parafrigoribacterium gen. nov. as Parafrigoribacterium mesophilum comb. nov.	Kong D, Guo X, Zhou S, Wang H, Wang Y, Zhu J, Dong W, Li Y, He M, Hu G, Zhao B, Ruan Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.001504	2016	*
Phylogeny	Glaciihabitans tibetensis gen. nov., sp. nov., a psychrotolerant bacterium of the family Microbacteriaceae, isolated from glacier ice water.	Li AH, Liu HC, Xin YH, Kim SG, Zhou YG	Int J Syst Evol Microbiol	10.1099/ijs.0.052670-0	2013	*
Phylogeny	Frigoribacterium mesophilum sp. nov., a mesophilic actinobacterium isolated from Bigeum Island, Korea.	Dastager SG, Lee JC, Ju YJ, Park DJ, Kim CJ	Int J Syst Evol Microbiol	10.1099/ijs.0.65637-0	2008	*

References

#8020

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19442

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21407

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#25090

D. G. Kong, X.,Zhou, S.,Wang, H.,Wang, Y.,Zhu, J.,Dong, W.,Li, Y.,He, M.,Hu, G.,Zhao, B.,Ruan, Z.: Frigoribacterium salinisoli sp. nov., isolated from saline soil, transfer of Frigoribacterium mesophilum to Parafrigoribacterium gen. nov. as Parafrigoribacterium mesophilum comb. nov. IJSEM 66: 5252 - 5259 2016 ( DOI 10.1099/ijsem.0.001504 , PubMed 27654623 )

#32529

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28747 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#76778

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398385.1 )

#28747

IJSEM 1869 2008 ( DOI 10.1099/ijs.0.65637-0 , PubMed 18676471 )

* These data were automatically processed and therefore are not curated

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