Name: Roseomonas vinacea DSM 19362
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 73

Type strain:

Species: Roseomonas vinacea

Culture col. no.: DSM 19362, CCM 7468, KCTC 22045, CPCC 100056, UCCCB25

Strain history: Zhang Y.-Q. Chinese Academy of Medical Sciences and Peking Union Medical College

NCBI tax ID(s): 1123064 (strain), 424704 (species)

SI-ID 396875

DSM 19362

Section

Roseomonas vinacea DSM 19362 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from forest soil.

colony-forming
Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Roseomonas*
	Species	**Roseomonas vinacea**
	Full Scientific Name (LPSN)	Roseomonas vinacea Zhang et al. 2008

Synonym

Pararoseomonas vinacea

Information on morphological and physiological properties Morphology

[Ref.: #22960]	Gram stain	negative

[Ref.: #22960]	Cell length	0.9-2.2 µm

[Ref.: #22960]	Cell width	0.9-1.0 µm

[Ref.: #22960]	Cell shape	rod-shaped

[Ref.: #22960]	Motility	no

[Ref.: #22960]	Colony size	0.7-1.0 mm
[Ref.: #22960]	Colony color	opaque
[Ref.: #22960]	Colony shape	circular
[Ref.: #22960]	Incubation period	3 days
[Ref.: #22960]	Cultivation medium used	ISP2 agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

R2A MEDIUM (DSMZ Medium 830)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #8073]

Culture medium composition

expand / minimize

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Culture medium

ISP2

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Culture medium growth

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Culture medium

ISP2 agar

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Culture medium growth

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Culture medium

ISP5

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

Tryptic Soy Agar

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Culture medium growth

		Temperature
[Ref.: #8073]	growth	28 °C
[Ref.: #22960]	growth	4.0-40.0 °C
[Ref.: #22960]	optimum	30.0-32.0 °C
[Ref.: #67772]	optimum	30-32 °C
[Ref.: #67772]	minimum	4 °C
[Ref.: #67772]	maximum	40 °C

[Ref.: #8073]	Temperature range	mesophilic
[Ref.: #22960]	Temperature range	mesophilic
[Ref.: #67772]	Temperature range	mesophilic
[Ref.: #67772]	Temperature range	psychrophilic
[Ref.: #67772]	Temperature range	thermophilic

		pH
[Ref.: #67772]	maximum	8.0
[Ref.: #67772]	minimum	6.5
[Ref.: #22960]	optimum	7.0-7.5
[Ref.: #67772]	optimum	7.0-7.5
[Ref.: #22960]	growth	6.5-8.0

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

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Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #22960]		NaCl		growth	<2.0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #22960]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #22960]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #22960]	amygdalin ChEBI	-	builds acid from
[Ref.: #22960]	arbutin ChEBI	-	builds acid from
[Ref.: #22960]	casein	-	hydrolysis
[Ref.: #22960]	cellobiose ChEBI	-	builds acid from
[Ref.: #22960]	D-arabinose ChEBI	-	builds acid from
[Ref.: #22960]	D-arabitol ChEBI	-	builds acid from
[Ref.: #22960]	D-fructose ChEBI	-	builds acid from
[Ref.: #22960]	D-fucose ChEBI	-	builds acid from
[Ref.: #22960]	D-galactose ChEBI	-	builds acid from
[Ref.: #22960]	D-galactose ChEBI	-	carbon source
[Ref.: #22960]	D-glucose ChEBI	+	carbon source
[Ref.: #22960]	D-lyxose ChEBI	-	builds acid from
[Ref.: #22960]	D-mannitol ChEBI	-	builds acid from
[Ref.: #22960]	D-mannitol ChEBI	+	carbon source
[Ref.: #22960]	D-mannose ChEBI	-	builds acid from
[Ref.: #22960]	D-mannose ChEBI	+	carbon source
[Ref.: #22960]	D-ribose ChEBI	+	carbon source
[Ref.: #22960]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #22960]	D-tagatose ChEBI	-	builds acid from
[Ref.: #22960]	D-trehalose ChEBI	-	builds acid from
[Ref.: #22960]	D-xylose ChEBI	-	builds acid from
[Ref.: #22960]	D-xylose ChEBI	-	carbon source
[Ref.: #22960]	erythritol ChEBI	-	builds acid from
[Ref.: #22960]	esculin ChEBI	-	builds acid from
[Ref.: #22960]	esculin ChEBI	-	hydrolysis
[Ref.: #22960]	fructose ChEBI	-	carbon source
[Ref.: #22960]	galactitol ChEBI	-	builds acid from
[Ref.: #22960]	gelatin ChEBI	-	hydrolysis
[Ref.: #22960]	gentiobiose ChEBI	-	builds acid from
[Ref.: #22960]	gluconate ChEBI	-	builds acid from
[Ref.: #22960]	glucose ChEBI	-	fermentation
[Ref.: #22960]	glycerol ChEBI	-	builds acid from
[Ref.: #22960]	glycerol ChEBI	-	carbon source
[Ref.: #22960]	glycogen ChEBI	-	builds acid from
[Ref.: #22960]	inulin ChEBI	-	builds acid from
[Ref.: #22960]	L-arabinose ChEBI	+	carbon source
[Ref.: #22960]	L-arabitol ChEBI	-	builds acid from
[Ref.: #22960]	L-fucose ChEBI	-	builds acid from
[Ref.: #22960]	L-rhamnose ChEBI	+	carbon source
[Ref.: #22960]	L-sorbose ChEBI	-	builds acid from
[Ref.: #22960]	L-xylose ChEBI	-	builds acid from
[Ref.: #22960]	lactose ChEBI	-	builds acid from
[Ref.: #22960]	maltose ChEBI	-	builds acid from
[Ref.: #22960]	melezitose ChEBI	-	builds acid from
[Ref.: #22960]	melibiose ChEBI	-	builds acid from
[Ref.: #22960]	melibiose ChEBI	+	carbon source
[Ref.: #22960]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #22960]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #22960]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #22960]	myo-inositol ChEBI	-	builds acid from
[Ref.: #22960]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #22960]	nitrate ChEBI	+	reduction
[Ref.: #22960]	nitrite ChEBI	-	reduction
[Ref.: #22960]	raffinose ChEBI	-	builds acid from
[Ref.: #22960]	ribitol ChEBI	-	builds acid from
[Ref.: #22960]	ribose ChEBI	+	carbon source
[Ref.: #22960]	salicin ChEBI	-	builds acid from
[Ref.: #22960]	sodium citrate ChEBI	-	carbon source
[Ref.: #22960]	starch ChEBI	-	builds acid from
[Ref.: #22960]	starch ChEBI	-	hydrolysis
[Ref.: #22960]	sucrose ChEBI	-	builds acid from
[Ref.: #22960]	turanose ChEBI	-	builds acid from
[Ref.: #22960]	tween 20 ChEBI	+	hydrolysis
[Ref.: #22960]	tween 80 ChEBI	+	hydrolysis
[Ref.: #22960]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #22960]	amikacin ChEBI		yes
[Ref.: #22960]	chloramphenicol ChEBI	yes
[Ref.: #22960]	chlortetracyclin ChEBI	yes
[Ref.: #22960]	ciprofloxacin ChEBI		yes
[Ref.: #22960]	erythromycin ChEBI		yes
[Ref.: #22960]	gentamicin ChEBI		yes
[Ref.: #22960]	kanamycin ChEBI	yes
[Ref.: #22960]	nalidixic acid ChEBI	yes
[Ref.: #22960]	netilmycin ChEBI	yes
[Ref.: #22960]	novobiocin ChEBI	yes
[Ref.: #22960]	oleandomycin ChEBI	yes
[Ref.: #22960]	oxytetracycline ChEBI	yes
[Ref.: #22960]	penicillin g ChEBI		yes
[Ref.: #22960]	polymyxin b ChEBI		yes
[Ref.: #22960]	streptomycin ChEBI		yes
[Ref.: #22960]	tetracycline ChEBI	yes
[Ref.: #22960]	tobramycin ChEBI	yes
[Ref.: #22960]	vancomycin ChEBI		yes
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #22960]	acetoin ChEBI	no
[Ref.: #22960]	hydrogen sulfide ChEBI	no
[Ref.: #22960]	indole ChEBI	no
[Ref.: #22960]	melanin ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #22960]		acetoin ChEBI	-
[Ref.: #22960]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #22960]	acid phosphatase	-	3.1.3.2
[Ref.: #22960]	Alkaline phosphatase	+	3.1.3.1
[Ref.: #22960]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #22960]	alpha-fucosidase	-	3.2.1.51
[Ref.: #22960]	alpha-galactosidase	-	3.2.1.22
[Ref.: #22960]	alpha-glucosidase	-	3.2.1.20
[Ref.: #22960]	alpha-mannosidase	-	3.2.1.24
[Ref.: #22960]	arginine dihydrolase	-	3.5.3.6
[Ref.: #22960]	beta-galactosidase	-	3.2.1.23
[Ref.: #22960]	beta-glucosidase	-	3.2.1.21
[Ref.: #22960]	beta-glucuronidase	-	3.2.1.31
[Ref.: #22960]	catalase	+	1.11.1.6
[Ref.: #22960]	cystine arylamidase	+	3.4.11.3
[Ref.: #22960]	cytochrome oxidase	+	1.9.3.1
[Ref.: #22960]	DNase	-
[Ref.: #22960]	esterase (C 4)	+
[Ref.: #22960]	esterase lipase (C 8)	+
[Ref.: #22960]	leucine arylamidase	-	3.4.11.1
[Ref.: #22960]	lipase (C 14)	+
[Ref.: #22960]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #22960]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #22960]	trypsin	-	3.4.21.4
[Ref.: #22960]	urease	-	3.5.1.5
[Ref.: #22960]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8073]	Sample type/isolated from	forest soil
[Ref.: #8073]	Geographic location (country and/or sea, region)	Qinghai Province, Qinghai–Tibet plateau
[Ref.: #8073]	Country	China
[Ref.: #8073]	Country ISO 3 Code	CHN
[Ref.: #8073]	Continent	Asia

[Ref.: #22960]	Sample type/isolated from	soil sample
[Ref.: #22960]	Enrichment culture	ISP2 broth
[Ref.: #22960]	Enrichment culture duration	5 days
[Ref.: #22960]	Enrichment culture temperature	32.0 ̊C
[Ref.: #22960]	Isolation/enrichment procedure	shake flasks (about 150 r.p.m.)

[Ref.: #67772]	Sample type/isolated from	Forest soil
[Ref.: #67772]	Sampling date	2005
[Ref.: #67772]	Geographic location (country and/or sea, region)	Qinghai-Tibet plateau
[Ref.: #67772]	Country	China
[Ref.: #67772]	Country ISO 3 Code	CHN
[Ref.: #67772]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Forest
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF368368 (>99% sequence identity) for Roseomonas vinacea subclade from Microbeatlas

Aquatic Samples	415
Soil Samples	657
Animal Samples	1985
Plant Samples	330
Total Samples	3387

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8073]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #67772]	Biosafety level	1

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8073]	Roseomonas vinaceus strain CPCC 100056 16S ribosomal RNA gene, partial sequence	EF368368	1421	ENA	424704 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Roseomonas vinacea DSM 19362	2574179773	draft	JGI IMG/M	1123064 tax ID	*

[Ref.: #8073]	GC-content	67.3 mol%
[Ref.: #22960]	GC-content	67.3 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #8073]

Culture collection no.

DSM 19362, CCM 7468, KCTC 22045, CPCC 100056, UCCCB25

[Ref.: #69757]

SI-ID 396875

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Roseomonas terricola sp. nov., isolated from agricultural soil.	Kim DU, Lee H, Kim SG, Ka JO	Int J Syst Evol Microbiol	10.1099/ijsem.0.002389	2017	*
Phylogeny	Roseomonas aeriglobus sp. nov., isolated from an air-conditioning system.	Lee Y, Jeon CO	Antonie Van Leeuwenhoek	10.1007/s10482-017-0956-x	2017	*
Phylogeny	Roseomonas nepalensis sp. nov., isolated from oil-contaminated soil.	Chaudhary DK, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001727	2017	*
Phylogeny	Roseomonas vinacea sp. nov., a Gram-negative coccobacillus isolated from a soil sample.	Zhang YQ, Yu LY, Wang D, Liu HY, Sun CH, Jiang W, Zhang YQ, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.65789-0	2008	*

References

#8073

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19362

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22960

Yu-Qin Zhang, Li-Yan Yu,Dong Wang,Hong-Yu Liu,Cheng-Hang Sun,Wei Jiang,Yue-Qin Zhang,Wen-Jun Li: Roseomonas vinacea sp. nov., a Gram-negative coccobacillus isolated from a soil sample. IJSEM 58: 2070 - 2074 2008 ( DOI 10.1099/ijs.0.65789-0 , PubMed 18768606 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67772 The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69757

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396875.1 )

* These data were automatically processed and therefore are not curated

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