Name: Clavibacter tessellarius 78181
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7299

Type strain:

Species: Clavibacter tessellarius

Strain Designation: 78181

Culture col. no.: DSM 20741, ATCC 33566, CIP 105364, CCUG 38896, JCM 9668, CFBP 3496, ICMP 7221, KCCM 41105, LMG 7294, NCPPB 3664, VKM Ac-1406

Strain history: ICMP 7221 <-- A. K. Vidaver 78181.

NCBI tax ID(s): 31965 (subspecies)

SI-ID 1914

LMG 7294, ATCC 33566, ICMP 7221, PDDCC 7221, CCUG 38896, CIP 105364, DSM 20741, JCM 9668, VKM Ac-1406, NCPPB 3664, CFBP 3496

Other strains from Clavibacter tessellarius

C. tessellarius CCUG 23912, LMG 7295, CIP 104845

Section

Clavibacter tessellarius 78181 is a mesophilic plant pathogen that was isolated from winter wheat.

mesophilic
plant pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Clavibacter*
	Species	**Clavibacter tessellarius**
	Full Scientific Name (LPSN)	Clavibacter tessellarius (Carlson and Vidaver 1982) Li et al. 2018

	Synonym	Corynebacterium michiganense subsp. tessellarius
	Synonym	Clavibacter michiganense subsp. tessellarius
	Synonym	Clavibacter michiganensis subsp. tessellarius

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %95.915

[Ref.: #18771]	Colony color	Pastel orange
[Ref.: #18771]	Incubation period	10-14 days
[Ref.: #18771]	Cultivation medium used	ISP 2

[Ref.: #18771]	Colony color	Pastel orange
[Ref.: #18771]	Incubation period	10-14 days
[Ref.: #18771]	Cultivation medium used	ISP 3

[Ref.: #18771]	Colony color	Pastel orange
[Ref.: #18771]	Incubation period	10-14 days
[Ref.: #18771]	Cultivation medium used	ISP 4

[Ref.: #18771]	Colony color	Pastel orange
[Ref.: #18771]	Incubation period	10-14 days
[Ref.: #18771]	Cultivation medium used	ISP 5

[Ref.: #18771]	Colony color	Pastel orange
[Ref.: #18771]	Incubation period	10-14 days
[Ref.: #18771]	Cultivation medium used	ISP 6

[Ref.: #18771]	Colony color	Pastel orange
[Ref.: #18771]	Incubation period	10-14 days
[Ref.: #18771]	Cultivation medium used	ISP 7

[Ref.: #18771]	Multicellular complex forming ability	no
[Ref.: #18771]	Medium Name (multicellularity)	ISP 2

[Ref.: #18771]	Multicellular complex forming ability	no
[Ref.: #18771]	Medium Name (multicellularity)	ISP 3

[Ref.: #18771]	Multicellular complex forming ability	no
[Ref.: #18771]	Medium Name (multicellularity)	ISP 4

[Ref.: #18771]	Multicellular complex forming ability	no
[Ref.: #18771]	Medium Name (multicellularity)	ISP 5

[Ref.: #18771]	Multicellular complex forming ability	no
[Ref.: #18771]	Medium Name (multicellularity)	ISP 6

[Ref.: #18771]	Multicellular complex forming ability	no
[Ref.: #18771]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #18771]

Culture medium

ISP 2

[Ref.: #18771]

Culture medium growth

[Ref.: #18771]

Culture medium composition

expand / minimize

[Ref.: #18771]

Culture medium

ISP 3

[Ref.: #18771]

Culture medium growth

[Ref.: #18771]

Culture medium composition

expand / minimize

[Ref.: #18771]

Culture medium

ISP 4

[Ref.: #18771]

Culture medium growth

[Ref.: #18771]

Culture medium composition

expand / minimize

[Ref.: #18771]

Culture medium

ISP 5

[Ref.: #18771]

Culture medium growth

[Ref.: #18771]

Culture medium composition

expand / minimize

[Ref.: #18771]

Culture medium

ISP 6

[Ref.: #18771]

Culture medium growth

[Ref.: #18771]

Culture medium composition

expand / minimize

[Ref.: #18771]

Culture medium

ISP 7

[Ref.: #18771]

Culture medium growth

[Ref.: #18771]

Culture medium composition

expand / minimize

[Ref.: #9050]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #9050]

Culture medium growth

[Ref.: #9050]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9050]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #9050]	growth	30 °C
[Ref.: #18771]	optimum	28 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #9050]	Temperature range	mesophilic
[Ref.: #18771]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.993

[Ref.: #9050]	Murein short key	B07
[Ref.: #9050]	Murein types	B2gamma {Gly} [L-Dab] D-Glu-D-Dab

[Ref.: #67770]

Observation

quinones: MK-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E, API Coryne
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E, API Coryne
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API Coryne, API 20E
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym, API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne, API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym, API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	-		* from API zym
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne, API 20E
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18771]	246	+	-	-	-	+	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #18771]	202	-	-	+	+	-	+	+	-	+	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18771]	336	not determinedn.d.	+	-	+	-	+	-	-	-	-	+	-	+	+	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9050]	Sample type/isolated from	winter wheat

[Ref.: #54537]	Sample type/isolated from	Winter wheat,Triticum aestivum
[Ref.: #54537]	Sampling date	1978

[Ref.: #67770]	Sample type/isolated from	Wheat (Triticum aestivum)
[Ref.: #67770]	Host species	Triticum aestivum
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM410693 (>99% sequence identity) for Clavibacter michiganensis from Microbeatlas

Aquatic Samples	10493
Soil Samples	15732
Animal Samples	18473
Plant Samples	10075
Total Samples	54773

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9050]	Pathogenicity (plant)	yes
[Ref.: #9050]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #18771]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Clavibacter michiganensis subsp. tessellarius strain ATCC 33566 16S ribosomal RNA gene, partial sequence	U30254	1490	ENA	31965 tax ID	*
[Ref.: #20218]	Clavibacter michiganensis subsp. tessellarius 16S ribosomal RNA gene, partial sequence	U96181	1266	ENA	31965 tax ID	*
[Ref.: #20218]	Clavibacter michiganensis subsp. tessellarius partial 16S rRNA gene, type strain DSM 20741	AM410693	1490	ENA	31965 tax ID	*
[Ref.: #20218]	Clavibacter michiganensis subsp. tessellarius partial 16S rRNA gene, strain LMG7294T	FR728303	441	ENA	31965 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Clavibacter michiganensis subsp. tessellarius ATCC 33566	GCA_002240635	contig	GenBank	31965 tax ID
[Ref.: #66792]	Clavibacter michiganensis subsp. tessellarius	31965.5	wgs	PATRIC	31965 tax ID	*
[Ref.: #66792]	Clavibacter michiganensis tessellarius ATCC 33566	2866971023	draft	JGI IMG/M	31965 tax ID	*
[Ref.: #66792]	Clavibacter michiganensis subsp. tessellarius ATCC 33566	GCA_021922985	complete	GenBank	31965 tax ID	*

[Ref.: #9050]

GC-content

74.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Clavibacter michiganensis subsp. tessellarius PATRIC: 31965.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Clavibacter michiganensis subsp. tessellarius ATCC 33566 NCBI: GCA_021922985.1
[Ref.: #69480]	flagellated	no	98.058	no
[Ref.: #69480]	gram-positive	yes	92.918	no
[Ref.: #69480]	anaerobic	no	99.238	no
[Ref.: #69480]	aerobic	yes	93.721	no
[Ref.: #69480]	halophile	no	83.986	no
[Ref.: #69480]	spore-forming	no	94.664	no
[Ref.: #69480]	motile	no	91.484	no
[Ref.: #69480]	glucose-ferment	no	90.378	yes
[Ref.: #69480]	thermophile	no	98.578	yes
[Ref.: #69480]	glucose-util	yes	85.771	no

Availability in culture collections External links

[Ref.: #9050]

Culture collection no.

DSM 20741, ATCC 33566, CIP 105364, CCUG 38896, JCM 9668, CFBP 3496, ICMP 7221, KCCM 41105, LMG 7294, NCPPB 3664, VKM Ac-1406

[Ref.: #76749]

SI-ID 1914

References

#9050

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20741

#18771

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#54537 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 38896

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76749

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID1914.1 )

* These data were automatically processed and therefore are not curated

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Clavibacter michiganensis subsp. tessellarius

Clavibacter michiganensis subsp. tessellarius ATCC 33566

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