Workshop and Q&A October 6th

Strain identifier

BacDive ID: 7290

Type strain: Yes

Species: Clavibacter nebraskensis

Strain Designation: II 296

Strain history: <- NCPPB <- M.L. Schuster, II296

NCBI tax ID(s): 31963 (subspecies)

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Clavibacter nebraskensis II 296 is a mesophilic plant pathogen that was isolated from Zea mays.

  1. mesophilic
  2. plant pathogen
  3. 16S sequence
  4. Bacteria
  5. genome sequence
  • Information on physiology and metabolism Physiology and metabolismarrow_down
  • [Ref.: #3182] Murein short key B07
    [Ref.: #3182] Murein types B2gamma {Gly} [L-Dab] D-Glu-D-Dab
    Fatty acid profile
    Metadata FA analysis
    Type of FA analysis whole cell analysis
    Incubation medium
    Agar/liquid
    Incubation temperature (°C)
    Incubation time (d)
    Incubation pH
    Incubation oxygen condition
    Treatment/condition
    Software version
    Library/peak naming table
    System
    Instrument
    Method/protocol CCUG
    Cutoff value
    Reference [Ref.: #54535]
    Fatty acidarrow to sort Percentagearrow to sort ECLarrow to sort
    C15:0 ANTEISO 51.4
    14.711
    C17:0 anteiso 26.5
    16.722
    C16:0 iso 10.8
    15.626
    C16:0 3.2
    16
    Unidentified 1.7
    15.013
    C15:1 ANTEISO A 1.5
    14.526
    C15:0 ISO 1.3
    14.621
    Unidentified 1.1
    17.023
    C17:0 iso 0.8
    16.629
    C18:2 ω6,9c/C18:0 ANTE 0.8
    17.724
    C18:1 ω9c 0.7
    17.769
    C14:0 ISO 0.4
    13.618

  • Availability in culture collections External linksarrow_down
  • [Ref.: #3182] Culture collection no. DSM 7483, ATCC 27794, CIP 105362, ICMP 3298, NCPPB 2581, CCUG 38894, LMG 3700, LMG 5627, LMG 7223
    [Ref.: #20218] Associated Passport(s) in StrainInfo 131806, 7403, 131805, 7405, 7408
    Literature:
    Titlearrow to sort Authorsarrow to sort Journalarrow to sort DOIarrow to sort Yeararrow to sort Mesharrow to sort Topicarrow to sort Topic2arrow to sort
    Genome Analysis and Development of a Multiplex TaqMan Real-Time PCR for Specific Identification and Detection of Clavibacter michiganensis subsp. nebraskensis. Tambong JT, Xu R, Daayf F, Briere S, Bilodeau GJ, Tropiano R, Hartke A, Reid LM, Cott M, Cote T, Agarkova I Phytopathology 10.1094/PHYTO-05-16-0188-R 2016 DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genome, Bacterial/*genetics, Micrococcaceae/*genetics/isolation & purification, Multiplex Polymerase Chain Reaction/methods, Phylogeny, Plant Diseases/*microbiology, Real-Time Polymerase Chain Reaction/*methods, Sensitivity and Specificity, Sequence Analysis, DNA, Zea mays/*microbiology Phylogeny Genetics *
    First Report of Goss's Bacterial Leaf Blight and Wilt of Corn Caused by Clavibacter michiganensis subsp. nebraskensis in North Dakota. Friskop A, Kinzer K, McConnell M, Liu Z, Korus K, Timmerman A, Jackson T Plant Dis 10.1094/PDIS-04-14-0397-PDN 2014 *
    MinION Nanopore-based detection of Clavibacter nebraskensis, the corn Goss's wilt pathogen, and bacteriomic profiling of necrotic lesions of naturally-infected leaf samples. Xu R, Adam L, Chapados J, Soliman A, Daayf F, Tambong JT PLoS One 10.1371/journal.pone.0245333 2021 Bacterial Proteins/genetics, Clavibacter/*genetics/isolation & purification, DNA, Bacterial/genetics, Genes, Bacterial, High-Throughput Nucleotide Sequencing, Nanopore Sequencing/*methods, Nucleobase Transport Proteins/genetics, Plant Diseases/*microbiology, Plant Leaves/microbiology, RNA, Ribosomal, 16S/genetics, Zea mays/*microbiology Phylogeny Enzymology *

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