Agromyces bauzanensis (DSM 22275, CGMCC 1.8984, BZ41)

Name: Agromyces bauzanensis (DSM 22275, CGMCC 1.8984, BZ41)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7282

Type strain

Strain Designation BZ41

Culture col. no. DSM 22275 CGMCC 1.8984 BZ41 JCM 17735 CIP 110128

NCBI tax ID(s) 1308924

Special Collections DSMZ JCM Literature strains CIP

Links

Agromyces bauzanensis BZ41 is an aerobe, mesophilic, Gram-positive prokaryote that was isolated from hydrocarbon-contaminated soil.

Gram-positive rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 371004

CGMCC 1.8984,DSM 22275,JCM 17735,CIP 110128

@ref 20215

Last LPSN update 2025-12-16 09:48:32

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Agromyces

Species Agromyces bauzanensis

Full scientific name Agromyces bauzanensis Zhang et al. 2010

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell shape
29622	positive	0.3-0.5 µm	rod-shaped
122028			rod-shaped
125439	positive
125438

Pigmentation

29622

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
16171	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
40650	MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati		Distilled water make up to (1000.000 ml);R2A agar (18.200 g)
122028	CIP Medium 566	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16171	positive	growth	28	mesophilic
29622	positive	growth	25-37	mesophilic
29622	positive	optimum	25-30	mesophilic
40650	positive	growth	25	mesophilic
67770	positive	growth	28	mesophilic

Culture pH

@ref	Ability	Type	PH
29622	positive	optimum	07-08
29622	positive	growth	07-08

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
29622	aerobe
122028	obligate aerobe
125439	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
125439		91.1

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29622	NaCl	positive	growth	0-2 %
29622	NaCl	positive	optimum	0-2 %

Murein

@ref	Murein short key	Type
16171	B07	B2gamma {Gly} [L-Dab] D-Glu-D-Dab

Observation

@ref	Observation
29622	aggregates in chains
67770	quinones: MK-12, MK-11, MK-13

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29622	58143 ChEBI	5-dehydro-D-gluconate	+	carbon source
29622	17057 ChEBI	cellobiose	+	carbon source
29622	4853 ChEBI	esculin	+	hydrolysis
29622	28260 ChEBI	galactose	+	carbon source
29622	17234 ChEBI	glucose	+	carbon source
29622	17754 ChEBI	glycerol	+	carbon source
29622	28087 ChEBI	glycogen	+	carbon source
29622	17306 ChEBI	maltose	+	carbon source
29622	37684 ChEBI	mannose	+	carbon source
122028	17632 ChEBI	nitrate	-	reduction
122028	16301 ChEBI	nitrite	-	reduction
29622	26546 ChEBI	rhamnose	+	carbon source
29622	17814 ChEBI	salicin	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
122028	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
29622	catalase	+	1.11.1.6
122028	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122028	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
122028	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122028	-	-	+	+	-	+	-	+	-	-	-	+	-	-	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Engineered	#Contamination
#Environmental	#Terrestrial

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16171	hydrocarbon-contaminated soil	South Tyrol, Bozen	Italy	ITA	Europe
67770	Hydrocarbon-contaminated soil	Bozen, South Tyrol	Italy	ITA	Europe
122028	Environment, Soil	Tyrol	Italy	ITA	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16171	1	Risk group (German classification) According to TRBA 466
122028	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1464565v1 assembly for Agromyces bauzanensis CGMCC 1.8984	contig	GCA_014645655	1308924.3	2995697432	1308924	50.03
124043	ASM3954125v1 assembly for Agromyces bauzanensis JCM 17735	scaffold	GCA_039541255			1308924	32.82

Genome browser: GCA_014645655

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16171	Agromyces sp. BZ41 16S ribosomal RNA gene, partial sequence	FJ972171	1528		1308924

GC content

@ref	GC-content (mol%)	Method
16171	69.7	thermal denaturation, midpoint method (Tm)
29622	69.7

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Agromyces bauzanensis CGMCC 1.8984
NCBI: GCA_014645655

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	91.10	no
125439	motility	BacteriaNetⓘ	no	52.20	no
125439	gram_stain	BacteriaNetⓘ	positive	92.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Agromyces bauzanensis strain CGMCC 1.8984
PATRIC: 1308924.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.79	no
125438	anaerobic	anaerobicⓘ	no	95.66	yes
125438	spore-forming	spore-formingⓘ	no	81.70	no
125438	aerobic	aerobicⓘ	yes	88.00	no
125438	thermophilic	thermophileⓘ	no	95.00	yes
125438	flagellated	motile2+ⓘ	no	94.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Agromyces bauzanensis sp. nov., isolated from soil.	Zhang DC, Schumann P, Liu HC, Xin YH, Zhou YG, Schinner F, Margesin R	Int J Syst Evol Microbiol	10.1099/ijs.0.017186-0	2009

References

#16171	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22275
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#29622	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26012 (see below)
#40650	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#122028	Collection of Institut Pasteur ; Curators of the CIP; CIP 110128
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Agromyces bauzanensis (DSM 22275, CGMCC 1.8984, BZ41)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Murein

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014645655

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media