Methylobacillus arboreus (DSM 23628, CCUG 59684, VKM B-2590)

Name: Methylobacillus arboreus (DSM 23628, CCUG 59684, VKM B-2590)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7238

Type strain

Strain Designation Iva, VKM B-2590

Culture col. no. DSM 23628 CCUG 59684 VKM B-2590 Iva VKM B-2590

NCBI tax ID(s) 755170

Special Collections DSMZ CCUG

History DSMZ <- Y. Trotsenko, VKM; Iva <- N. V. Doronina

Links

Methylobacillus arboreus Iva is an aerobe bacterium that was isolated from willow buds L..

aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 398358

VKM B-2590,DSM 23628,CCUG 59684

@ref 20215

Last LPSN update 2026-05-29 08:26:36

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Spirillales

Family Methylophilaceae

Genus Methylobacillus

Species Methylobacillus arboreus

Full scientific name Methylobacillus arboreus Gogleva et al. 2012

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	97.31

Colony morphology

62077

Incubation period2-3 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17186	MEDIUM K (DSMZ Medium 1122)		Medium recipe at MediaDive	Name: MEDIUM K (DSMZ Medium 1122) Composition: Agar 20.0 g/l KH2PO4 2.0 g/l (NH4)2SO4 2.0 g/l NaCl 0.5 g/l MgSO4 x 7 H2O 0.125 g/l FeSO4 x 7 H2O 0.002 g/l Methanol Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
17186	positive	growth	29
62077	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
62077	aerobe
125439	facultative anaerobe	91.507

Spore formation

@ref	Spore formation	Confidence
125439		99.74

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Tree
#Host Body-Site	#Plant	-

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Sampling date
17186	willow buds (Salix fragilis) L.	Salix fragilis	Moscow region, city park in Pushchino	Russia	RUS	Europe
62077	Phyllosphere of Salix fragilis		Moscow region,Pushchino	Russia	RUS	Europe	2008

Taxonmaps

69479

Global distribution of 16S sequence GU937479 (>99% sequence identity) for Methylobacillus flagellatus from Microbeatlas

Aquatic Samples	3987
Soil Samples	3764
Animal Samples	4802
Plant Samples	2577
Total Samples	15130

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17186	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM2053272v1 assembly for Methylobacillus arboreus VKM B-2590	scaffold	GCA_020532725	755170.5	8064049946	755170	74.06

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17186	Methylobacillus arboreus strain Iva 16S ribosomal RNA gene, partial sequence	GU937479	1397		755170

GC content

@ref	GC-content (mol%)	Method
17186	54.0	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM2053272v1 assembly for Methylobacillus arboreus VKM B-2590
NCBI: GCA_020532725

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	91.51	no
125439	gram_stain	BacteriaNetⓘ	negative	97.31	no
125439	motility	BacteriaNetⓘ	yes	74.05	no
125439	spore_formation	BacteriaNetⓘ	no	99.74	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Molecular Analysis of Methanogen Richness in Landfill and Marshland Targeting 16S rDNA Sequences.	Yadav S, Kundu S, Ghosh SK, Maitra SS.	Archaea	10.1155/2015/563414	2015
	Prerequisites for amplicon pyrosequencing of microbial methanol utilizers in the environment.	Kolb S, Stacheter A.	Front Microbiol	10.3389/fmicb.2013.00268	2013
Metabolism	Methylobacillus arboreus sp. nov., and Methylobacillus gramineus sp. nov., novel non-pigmented obligately methylotrophic bacteria associated with plants.	Gogleva AA, Kaparullina EN, Doronina NV, Trotsenko YA	Syst Appl Microbiol	10.1016/j.syapm.2011.03.005	2011

References

#17186	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23628
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#62077	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 59684
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Methylobacillus arboreus (DSM 23628, CCUG 59684, VKM B-2590)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_020532725

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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