Name: Methylobacillus glycogenes T-11
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7232

Type strain:

Species: Methylobacillus glycogenes

Strain Designation: T-11

Culture col. no.: DSM 5685, ATCC 29475, DSM 46232, IMET 10774, NCIMB 11375, JCM 2850, LMG 6082, VKM B-2060

Strain history: T. Urakami TK 0113 <-- ATCC 29475 <-- J. R. Yordy T-11 <-- T. Weaver.

NCBI tax ID(s): 1236959 (strain), 406 (species)

SI-ID 3558

LMG 6082, ATCC 29475, IMET 10774, JCM 2850, LMG 6786, NCIB 11375, NCIMB 11375, DSM 5685, DSM 46232, VKM B-2060

Other strains from Methylobacillus glycogenes

Section

Methylobacillus glycogenes T-11 is a mesophilic bacterium that was isolated from decaying tomato.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Nitrosomonadales*
	Family	*Methylophilaceae*
	Genus	*Methylobacillus*
	Species	**Methylobacillus glycogenes**
	Full Scientific Name (LPSN)	Methylobacillus glycogenes Yordy and Weaver 1977 (Approved Lists 1980)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2282]

Culture medium

COLBY AND ZATHMAN MEDIUM (DSMZ Medium 606)

[Ref.: #2282]

Culture medium growth

[Ref.: #2282]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2282]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2282]			growth	30 °C
[Ref.: #67770]			growth	30 °C

[Ref.: #2282]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2282]	Sample type/isolated from	decaying tomato

[Ref.: #67770]	Sample type/isolated from	Decaying tomato
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Decomposing plant
#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Fruit (Seed)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR733701 (>99% sequence identity) for Methylobacillus from Microbeatlas

Aquatic Samples	1076
Soil Samples	589
Animal Samples	2643
Plant Samples	789
Total Samples	5097

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2282]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #2282]	Methylobacillus glycogenes partial 16S rRNA gene, type strain DSM5685T	FR733701	1532	ENA	406 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Methylobacillus glycogenes JCM 2850	GCA_000617925	contig	GenBank	1236959 tax ID
[Ref.: #66792]	Methylobacillus glycogenes JCM 2850	1236959.3	wgs	PATRIC	1236959 tax ID	*
[Ref.: #66792]	Methylobacillus glycogenes JCM 2850	2585427884	draft	JGI IMG/M	1236959 tax ID	*

[Ref.: #67770]	GC-content	53.2 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	54.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methylobacillus glycogenes JCM 2850 PATRIC: 1236959.3
[Ref.: #69480]	motile	yes	86.105	no
[Ref.: #69480]	gram-positive	no	98.123	no
[Ref.: #69480]	anaerobic	no	98.225	no
[Ref.: #69480]	aerobic	yes	92.225	no
[Ref.: #69480]	halophile	no	93.811	no
[Ref.: #69480]	spore-forming	no	92.615	no
[Ref.: #69480]	thermophile	no	98.726	yes
[Ref.: #69480]	glucose-util	yes	63.344	no
[Ref.: #69480]	flagellated	yes	53.871	no
[Ref.: #69480]	glucose-ferment	no	90.23	no

Availability in culture collections External links

[Ref.: #2282]

Culture collection no.

DSM 5685, ATCC 29475, DSM 46232, IMET 10774, NCIMB 11375, JCM 2850, LMG 6082, VKM B-2060

[Ref.: #76684]

SI-ID 3558

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	[Methylovorus mays--novel species of aerobic, obligatory methylotrophic bacteria associated with plants].	Doronina NV, Kudinova LV, Trotsenko IuA	Mikrobiologiia		2000	*
Phylogeny	[Analysis of DNA-DNA homologies in obligate methylotrophic bacteria].	Doronina NV, Govorukhina NI, Lysenko AM, Trotsenko IuA	Mikrobiologiia		1988	*

References

#2282

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5685

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#76684

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID3558.1 )

* These data were automatically processed and therefore are not curated

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Methylobacillus glycogenes JCM 2850

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