Methylosinus sporium (DSM 17706, ACM 3306, ATCC 35069)

Name: Methylosinus sporium (DSM 17706, ACM 3306, ATCC 35069)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7225

Type strain

Strain Designation 5

Culture col. no. DSM 17706 ACM 3306 ATCC 35069 IMET 10545 NCIMB 11126 2 more

NCBI tax ID(s) 428

Special Collections DSMZ

Links

Methylosinus sporium 5 is a mesophilic prokaryote that was isolated from groundwater aquifer.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 45971

ATCC 35069,NCIB 11126,ACM 3306,IMET 10545,NCIMB 11126,DSM 17706

@ref 20215

Last LPSN update 2025-12-16 09:48:31

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Methylocystaceae

Genus Methylosinus

Species Methylosinus sporium

Full scientific name Methylosinus sporium (ex Whittenbury et al. 1970) Bowman et al. 1993

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	96.667
125439	negative	99.2

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7149	METHYLOSARCINA QUISQUILLARUM AND M. FIBRATA MEDIUM (DSMZ Medium 921)		Medium recipe at MediaDive	Name: METHYLOSARCINA QUISQUILLARUM AND M. FIBRATA MEDIUM (DSMZ Medium 921) Composition: Agar 15.0 g/l MgSO4 x 6 H2O 1.0 g/l KNO3 1.0 g/l Na2HPO4 x 12 H2O 0.716 g/l KH2PO4 0.26 g/l CaCl2 x 2 H2O 0.2 g/l CuSO4 x 5 H2O 0.001 g/l FeSO4 x 7 H2O 0.0005 g/l ZnSO4 x 7 H2O 0.0004 g/l Fe(III)-EDTA 0.00038 g/l Na2MoO4 x 2 H2O 0.00026 g/l Na2-EDTA 0.00025 g/l CoCl2 x 6 H2O 5e-05 g/l MnCl2 x 4 H2O 2e-05 g/l H3BO3 1.5e-05 g/l NiCl2 x 6 H2O 1e-05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7149	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	97.6

Spore formation

@ref	Spore formation	Confidence
125439		97

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Groundwater

Isolation

7149

Sample typegroundwater aquifer

Taxonmaps

69479

Global distribution of 16S sequence Y18946 (>99% sequence identity) for Methylosinus from Microbeatlas

Aquatic Samples	166
Soil Samples	128
Animal Samples	25
Plant Samples	13
Total Samples	332

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7149	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM311326v1 assembly for Methylosinus sporium DSM 17706	contig	GCA_003113265	428.4	2839752880	428	65.39
66792	ASM981167v1 assembly for Methylosinus sporium DSM 17706	contig	GCA_009811675	428.7		428	53.04

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Methylosinus sporium 16S rRNA gene	Y18946	1408		428

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Methylosinus sporium DSM 17706
NCBI: GCA_003113265

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.00	no
125439	motility	BacteriaNetⓘ	yes	57.40	no
125439	gram_stain	BacteriaNetⓘ	negative	99.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	97.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Methylosinus sporium strain DSM 17706
PATRIC: 428.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.67	no
125438	anaerobic	anaerobicⓘ	no	82.92	no
125438	spore-forming	spore-formingⓘ	no	87.10	no
125438	aerobic	aerobicⓘ	yes	75.37	no
125438	thermophilic	thermophileⓘ	no	96.72	no
125438	flagellated	motile2+ⓘ	yes	67.45	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Transcriptome	Determination of the transcription unit landscape and associated regulatory elements in Methylosinus sporium 5.	Bae J, Song D-U, Lee H, Lee S-G, Cho B-K.	Microbiol Spectr	10.1128/spectrum.01281-25	2025
Genetics	Cre/lox-Mediated CRISPRi Library Reveals Core Genome of a Type I Methanotroph Methylotuvimicrobium buryatense 5GB1C.	Cheng M, Pei D, He L, Fei Q, Yan X.	Appl Environ Microbiol	10.1128/aem.01883-22	2023
	Co-cultivation of the strictly anaerobic methanogen Methanosarcina barkeri with aerobic methanotrophs in an oxygen-limited membrane bioreactor.	In 't Zandt MH, van den Bosch TJM, Rijkers R, van Kessel MAHJ, Jetten MSM, Welte CU.	Appl Microbiol Biotechnol	10.1007/s00253-018-9038-x	2018
Phylogeny	Diversity and Habitat Preferences of Cultivated and Uncultivated Aerobic Methanotrophic Bacteria Evaluated Based on pmoA as Molecular Marker.	Knief C.	Front Microbiol	10.3389/fmicb.2015.01346	2015
Enzymology	MMOD-induced structural changes of hydroxylase in soluble methane monooxygenase.	Kim H, An S, Park YR, Jang H, Yoo H, Park SH, Lee SJ, Cho US.	Sci Adv	10.1126/sciadv.aax0059	2019
	Monitoring methanotrophic bacteria in hybrid anaerobic-aerobic reactors with PCR and a catabolic gene probe.	Miguez CB, Shen CF, Bourque D, Guiot SR, Groleau D.	Appl Environ Microbiol	10.1128/aem.65.2.381-388.1999	1999
	Soluble Methane Monooxygenase Production and Trichloroethylene Degradation by a Type I Methanotroph, Methylomonas methanica 68-1.	Koh SC, Bowman JP, Sayler GS.	Appl Environ Microbiol	10.1128/aem.59.4.960-967.1993	1993
	Fatty Acid and Hopanoid Adaption to Cold in the Methanotroph Methylovulum psychrotolerans.	Bale NJ, Rijpstra WIC, Sahonero-Canavesi DX, Oshkin IY, Belova SE, Dedysh SN, Sinninghe Damste JS.	Front Microbiol	10.3389/fmicb.2019.00589	2019
Enzymology	Detection, isolation, and characterization of acidophilic methanotrophs from Sphagnum mosses.	Kip N, Ouyang W, van Winden J, Raghoebarsing A, van Niftrik L, Pol A, Pan Y, Bodrossy L, van Donselaar EG, Reichart GJ, Jetten MS, Damste JS, Op den Camp HJ.	Appl Environ Microbiol	10.1128/aem.05017-11	2011
Enzymology	Quantitative detection of methanotrophs in soil by novel pmoA-targeted real-time PCR assays.	Kolb S, Knief C, Stubner S, Conrad R.	Appl Environ Microbiol	10.1128/aem.69.5.2423-2429.2003	2003
Enzymology	The methanol dehydrogenase structural gene mxaF and its use as a functional gene probe for methanotrophs and methylotrophs.	McDonald IR, Murrell JC.	Appl Environ Microbiol	10.1128/aem.63.8.3218-3224.1997	1997
Metabolism	Differential effects of nitrogenous fertilizers on methane-consuming microbes in rice field and forest soils.	Mohanty SR, Bodelier PL, Floris V, Conrad R.	Appl Environ Microbiol	10.1128/aem.72.2.1346-1354.2006	2006
Metabolism	Elucidation of the electron transfer environment in the MMOR FAD-binding domain from Methylosinus sporium 5.	Lee C, Ha SC, Rao Z, Hwang Y, Kim DS, Kim SY, Yoo H, Yoon C, Na JG, Park JH, Lee SJ.	Dalton Trans	10.1039/d1dt03273a	2021
	Methanotrophic Communities and Cultivation of Methanotrophs from Rice Paddy Fields Fertilized with Pig-livestock Biogas Digestive Effluent and Synthetic Fertilizer in the Vietnamese Mekong Delta.	Thao HV, Tarao M, Takada H, Nishizawa T, Nam TS, Cong NV, Xuan DT.	Microbes Environ	10.1264/jsme2.me24021	2024
Enzymology	Electron Transfer to Hydroxylase through Component Interactions in Soluble Methane Monooxygenase.	Lee C, Hwang Y, Kang HG, Lee SJ.	J Microbiol Biotechnol	10.4014/jmb.2201.01029	2022
	Polyhydroxyalkanoate Production by Methanotrophs: Recent Updates and Perspectives.	Patel SKS, Singh D, Pant D, Gupta RK, Busi S, Singh RV, Lee JK.	Polymers (Basel)	10.3390/polym16182570	2024
Metabolism	Production of Methanol from Methane by Encapsulated Methylosinus sporium.	Patel SK, Jeong JH, Mehariya S, Otari SV, Madan B, Haw JR, Lee JK, Zhang L, Kim IW.	J Microbiol Biotechnol	10.4014/jmb.1608.08053	2016
	Methane-Derived Carbon as a Driver for Cyanobacterial Growth.	Cerbin S, Perez G, Rybak M, Wejnerowski L, Konowalczyk A, Helmsing N, Naus-Wiezer S, Meima-Franke M, Pytlak L, Raaijmakers C, Nowak W, Bodelier PLE.	Front Microbiol	10.3389/fmicb.2022.837198	2022
Metabolism	Response of methanotrophic activity to extracellular polymeric substance production and its influencing factors.	He R, Ma RC, Yao XZ, Wei XM.	Waste Manag	10.1016/j.wasman.2017.08.019	2017
Metabolism	Ammonium conversion and its feedback effect on methane oxidation of Methylosinus sporium.	He R, Chen M, Ma RC, Su Y, Zhang X.	J Biosci Bioeng	10.1016/j.jbiosc.2016.11.003	2017
Metabolism	Characterization of toluene metabolism by methanotroph and its effect on methane oxidation.	He R, Su Y, Ma RC, Zhuang S.	Environ Sci Pollut Res Int	10.1007/s11356-018-1863-z	2018
	Improvement in methanol production by regulating the composition of synthetic gas mixture and raw biogas.	Patel SK, Mardina P, Kim D, Kim SY, Kalia VC, Kim IW, Lee JK.	Bioresour Technol	10.1016/j.biortech.2016.06.065	2016
Enzymology	Comparative enzyme inhibitive methanol production by Methylosinus sporium from simulated biogas.	Yoo YS, Han JS, Ahn CM, Kim CG.	Environ Technol	10.1080/09593330.2014.971059	2015
	Biomethanol Production from Methane by Immobilized Co-cultures of Methanotrophs.	Patel SKS, Gupta RK, Kumar V, Kondaveeti S, Kumar A, Das D, Kalia VC, Lee JK.	Indian J Microbiol	10.1007/s12088-020-00883-6	2020
	Design of a Microbial Remediation Inoculation Program for Petroleum Hydrocarbon Contaminated Sites Based on Degradation Pathways.	Li X, He W, Du M, Zheng J, Du X, Li Y.	Int J Environ Res Public Health	10.3390/ijerph18168794	2021
	Biotransformation of Methane and Carbon Dioxide Into High-Value Products by Methanotrophs: Current State of Art and Future Prospects.	Sahoo KK, Goswami G, Das D.	Front Microbiol	10.3389/fmicb.2021.636486	2021
	Biosynthesis of Lactobionic Acid in Whey-Containing Medium by Microencapsulated and Free Bacteria of Pseudomonas taetrolens.	Goderska K.	Indian J Microbiol	10.1007/s12088-021-00944-4	2021
Metabolism	Assessment of methane biodegradation kinetics in two-phase partitioning bioreactors by pulse respirometry.	Ordaz A, Lopez JC, Figueroa-Gonzalez I, Munoz R, Quijano G.	Water Res	10.1016/j.watres.2014.08.054	2014
	Insight into Metal Removal from Peptides that Sequester Copper for Methane Oxidation.	Basle A, El Ghazouani A, Lee J, Dennison C.	Chemistry	10.1002/chem.201706035	2018
Phylogeny	Methane-cycling microbial communities from Amazon floodplains and upland forests respond differently to simulated climate change scenarios.	Gontijo JB, Paula FS, Bieluczyk W, Franca AG, Navroski D, Mandro JA, Venturini AM, Asselta FO, Mendes LW, Moura JMS, Moreira MZ, Nusslein K, Bohannan BJM, Bodelier PLE, Rodrigues JLM, Tsai SM.	Environ Microbiome	10.1186/s40793-024-00596-z	2024
	Methanotrophs Contribute to Nitrogen Fixation in Emergent Macrophytes.	Cui J, Zhang M, Chen L, Zhang S, Luo Y, Cao W, Zhao J, Wang L, Jia Z, Bao Z.	Front Microbiol	10.3389/fmicb.2022.851424	2022
Enzymology	Duplication of the mmoX gene in Methylosinus sporium: cloning, sequencing and mutational analysis.	Ali H, Scanlan J, Dumont MG, Murrell JC.	Microbiology (Reading)	10.1099/mic.0.29031-0	2006
	A rationally designed miniature of soluble methane monooxygenase enables rapid and high-yield methanol production in Escherichia coli.	Yu Y, Shi Y, Kwon YW, Choi Y, Kim Y, Na JG, Huh J, Lee J.	Nat Commun	10.1038/s41467-024-48671-w	2024
	Survey of methanotrophic diversity in various ecosystems by degenerate methane monooxygenase gene primers.	Ghashghavi M, Jetten MSM, Luke C.	AMB Express	10.1186/s13568-017-0466-2	2017
Metabolism	Coal-packed methane biofilter for mitigation of green house gas emissions from coal mine ventilation air.	Limbri H, Gunawan C, Thomas T, Smith A, Scott J, Rosche B.	PLoS One	10.1371/journal.pone.0094641	2014
Phylogeny	Diversity of soluble methane monooxygenase-containing methanotrophs isolated from polluted environments.	McDonald IR, Miguez CB, Rogge G, Bourque D, Wendlandt KD, Groleau D, Murrell JC.	FEMS Microbiol Lett	10.1111/j.1574-6968.2005.00090.x	2006
Metabolism	Methanol Production by "Methylacidiphilum fumariolicum" SolV under Different Growth Conditions.	Hogendoorn C, Pol A, Nuijten GHL, Op den Camp HJM.	Appl Environ Microbiol	10.1128/aem.01188-20	2020
Phylogeny	Isolation and Genomic Characterization of a Proteobacterial Methanotroph Requiring Lanthanides.	Kato S, Takashino M, Igarashi K, Kitagawa W.	Microbes Environ	10.1264/jsme2.me19128	2020
Enzymology	Methylocystis sp. Strain SC2 Acclimatizes to Increasing NH₄⁺ Levels by a Precise Rebalancing of Enzymes and Osmolyte Composition.	Guo K, Hakobyan A, Glatter T, Paczia N, Liesack W.	mSystems	10.1128/msystems.00403-22	2022
Genetics	Pan-Genome-Based Analysis as a Framework for Demarcating Two Closely Related Methanotroph Genera Methylocystis and Methylosinus.	Oshkin IY, Miroshnikov KK, Grouzdev DS, Dedysh SN.	Microorganisms	10.3390/microorganisms8050768	2020
	Responses of Low-Cost Input Combinations on the Microbial Structure of the Maize Rhizosphere for Greenhouse Gas Mitigation and Plant Biomass Production.	Yoshiura CA, Venturini AM, Braga LPP, da Franca AG, de Lyra MDCCP, Tsai SM, Rodrigues JLM.	Front Plant Sci	10.3389/fpls.2021.683658	2021
	Differential detection of type II methanotrophic bacteria in acidic peatlands using newly developed 16S rRNA-targeted fluorescent oligonucleotide probes.	Dedysh SN, Dunfield PF, Derakshani M, Stubner S, Heyer J, Liesack W.	FEMS Microbiol Ecol	10.1111/j.1574-6941.2003.tb01070.x	2003
	From Biogas and Hydrogen to Microbial Protein Through Co-Cultivation of Methane and Hydrogen Oxidizing Bacteria.	Kerckhof FM, Sakarika M, Van Giel M, Muys M, Vermeir P, De Vrieze J, Vlaeminck SE, Rabaey K, Boon N.	Front Bioeng Biotechnol	10.3389/fbioe.2021.733753	2021
Phylogeny	Diversity of cultivable methane-oxidizing bacteria in microsites of a rice paddy field: investigation by cultivation method and fluorescence in situ hybridization (FISH).	Dianou D, Ueno C, Ogiso T, Kimura M, Asakawa S.	Microbes Environ	10.1264/jsme2.me11327	2012
Phylogeny	Wide distribution of a novel pmoA-like gene copy among type II methanotrophs, and its expression in Methylocystis strain SC2.	Tchawa Yimga M, Dunfield PF, Ricke P, Heyer J, Liesack W.	Appl Environ Microbiol	10.1128/aem.69.9.5593-5602.2003	2003
Enzymology	Metal(loid) speciation and transformation by aerobic methanotrophs.	Karthikeyan OP, Smith TJ, Dandare SU, Parwin KS, Singh H, Loh HX, Cunningham MR, Williams PN, Nichol T, Subramanian A, Ramasamy K, Kumaresan D.	Microbiome	10.1186/s40168-021-01112-y	2021
Metabolism	Insights into functional bacterial diversity and its effects on Alpine bog ecosystem functioning.	Bragina A, Berg C, Muller H, Moser D, Berg G.	Sci Rep	10.1038/srep01955	2013
Genetics	Phylogenomic Analysis of the Gammaproteobacterial Methanotrophs (Order Methylococcales) Calls for the Reclassification of Members at the Genus and Species Levels.	Orata FD, Meier-Kolthoff JP, Sauvageau D, Stein LY.	Front Microbiol	10.3389/fmicb.2018.03162	2018
Enzymology	Low nitrogen fertilization adapts rice root microbiome to low nutrient environment by changing biogeochemical functions.	Ikeda S, Sasaki K, Okubo T, Yamashita A, Terasawa K, Bao Z, Liu D, Watanabe T, Murase J, Asakawa S, Eda S, Mitsui H, Sato T, Minamisawa K.	Microbes Environ	10.1264/jsme2.me13110	2014
	Evidence of microbial regulation of biogeochemical cycles from a study on methane flux and land use change.	Nazaries L, Pan Y, Bodrossy L, Baggs EM, Millard P, Murrell JC, Singh BK.	Appl Environ Microbiol	10.1128/aem.00095-13	2013
Phylogeny	The methanol dehydrogenase gene, mxaF, as a functional and phylogenetic marker for proteobacterial methanotrophs in natural environments.	Lau E, Fisher MC, Steudler PA, Cavanaugh CM.	PLoS One	10.1371/journal.pone.0056993	2013
	Characterization of Root-Associated Methanotrophs from Three Freshwater Macrophytes: Pontederia cordata, Sparganium eurycarpum, and Sagittaria latifolia.	Calhoun A, King GM.	Appl Environ Microbiol	10.1128/aem.64.3.1099-1105.1998	1998
Metabolism	Microbial oxidation of methane and methanol: crystallization and properties of methanol dehydrogenase from Methylosinus sporium.	Patel RN, Felix A.	J Bacteriol	10.1128/jb.128.1.413-424.1976	1976
Phylogeny	Comparative phylogenetic assignment of environmental sequences of genes encoding 16S rRNA and numerically abundant culturable bacteria from an anoxic rice paddy soil.	Hengstmann U, Chin KJ, Janssen PH, Liesack W.	Appl Environ Microbiol	10.1128/aem.65.11.5050-5058.1999	1999
Enzymology	Bacteriophages of methanotrophic bacteria.	Tyutikov FM, Bespalova IA, Rebentish BA, Aleksandrushkina NN, Krivisky AS.	J Bacteriol	10.1128/jb.144.1.375-381.1980	1980
	Structural and functional response of methane-consuming microbial communities to different flooding regimes in riparian soils.	Bodelier PL, Bar-Gilissen MJ, Meima-Franke M, Hordijk K.	Ecol Evol	10.1002/ece3.34	2012
Metabolism	Radioactive fingerprinting of microorganisms that oxidize atmospheric methane in different soils.	Roslev P, Iversen N.	Appl Environ Microbiol	10.1128/aem.65.9.4064-4070.1999	1999
	Bacterial primary colonization and early succession on surfaces in marine waters as determined by amplified rRNA gene restriction analysis and sequence analysis of 16S rRNA genes.	Dang H, Lovell CR.	Appl Environ Microbiol	10.1128/aem.66.2.467-475.2000	2000
	Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures.	McCaig AE, Glover LA, Prosser JI.	Appl Environ Microbiol	10.1128/aem.65.4.1721-1730.1999	1999
Phylogeny	Methanotroph diversity in landfill soil: isolation of novel type I and type II methanotrophs whose presence was suggested by culture-independent 16S ribosomal DNA analysis.	Wise MG, McArthur JV, Shimkets LJ.	Appl Environ Microbiol	10.1128/aem.65.11.4887-4897.1999	1999
Genetics	Analysis of 1,000+ Type-Strain Genomes Substantially Improves Taxonomic Classification of Alphaproteobacteria.	Hordt A, Lopez MG, Meier-Kolthoff JP, Schleuning M, Weinhold LM, Tindall BJ, Gronow S, Kyrpides NC, Woyke T, Goker M.	Front Microbiol	10.3389/fmicb.2020.00468	2020
Metabolism	Non-linear dynamics of stable carbon and hydrogen isotope signatures based on a biological kinetic model of aerobic enzymatic methane oxidation.	Vavilin VA, Rytov SV, Shim N, Vogt C	Isotopes Environ Health Stud	10.1080/10256016.2016.1092965	2015
Metabolism	Partial oxidative conversion of methane to methanol through selective inhibition of methanol dehydrogenase in methanotrophic consortium from landfill cover soil.	Han JS, Ahn CM, Mahanty B, Kim CG	Appl Biochem Biotechnol	10.1007/s12010-013-0410-0	2013
Phylogeny	Methylocystis rosea sp. nov., a novel methanotrophic bacterium from Arctic wetland soil, Svalbard, Norway (78 degrees N).	Wartiainen I, Hestnes AG, McDonald IR, Svenning MM	Int J Syst Evol Microbiol	10.1099/ijs.0.63912-0	2006

References

#7149	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17706
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Methylosinus sporium (DSM 17706, ACM 3306, ATCC 35069)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003113265

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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