Name: Methylosinus sporium 5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7225

Type strain:

Species: Methylosinus sporium

Strain Designation: 5

Culture col. no.: DSM 17706, ACM 3306, ATCC 35069, IMET 10545, NCIMB 11126, UNIQEM 60

Strain history: <- NCIMB <- R. Whittenbury, Univ. Warwick, Coventry, U.K. <- 5

NCBI tax ID(s): 428 (species)

SI-ID 45971

ATCC 35069, NCIB 11126, ACM 3306, IMET 10545, NCIMB 11126, DSM 17706

Section

Methylosinus sporium 5 is a mesophilic, Gram-negative bacterium that was isolated from groundwater aquifer.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Methylocystaceae*
	Genus	*Methylosinus*
	Species	**Methylosinus sporium**
	Full Scientific Name (LPSN)	Methylosinus sporium (ex Whittenbury et al. 1970) Bowman et al. 1993

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.995

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7149]

Culture medium

METHYLOSARCINA QUISQUILLARUM AND M. FIBRATA MEDIUM (DSMZ Medium 921)

[Ref.: #7149]

Culture medium growth

[Ref.: #7149]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7149]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7149]			growth	28 °C

[Ref.: #7149]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.993

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7149]	Sample type/isolated from	groundwater aquifer
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Groundwater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Y18946 (>99% sequence identity) for Methylosinus from Microbeatlas

Aquatic Samples	166
Soil Samples	128
Animal Samples	25
Plant Samples	13
Total Samples	332

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7149]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Methylosinus sporium 16S rRNA gene	Y18946	1408	ENA	428 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methylosinus sporium DSM 17706	GCA_003113265	contig	GenBank	428 tax ID	*
[Ref.: #66792]	Methylosinus sporium DSM 17706	GCA_009811675	contig	GenBank	428 tax ID	*
[Ref.: #66792]	Methylosinus sporium strain DSM 17706	428.4	wgs	PATRIC	428 tax ID	*
[Ref.: #66792]	Methylosinus sporium strain DSM 17706	428.7	wgs	PATRIC	428 tax ID	*
[Ref.: #66792]	Methylosinus sporium DSM 17706	2839752880	draft	JGI IMG/M	428 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Methylosinus sporium strain DSM 17706 PATRIC: 428.6
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methylosinus sporium strain DSM 17706 PATRIC: 428.4
[Ref.: #69480]	gram-positive	no	98.868	no
[Ref.: #69480]	anaerobic	no	96.22	no
[Ref.: #69480]	halophile	no	96.157	no
[Ref.: #69480]	spore-forming	no	89.043	no
[Ref.: #69480]	glucose-util	yes	71.34	no
[Ref.: #69480]	aerobic	yes	78.884	no
[Ref.: #69480]	flagellated	no	69.35	no
[Ref.: #69480]	motile	yes	76.135	no
[Ref.: #69480]	thermophile	no	98.465	yes
[Ref.: #69480]	glucose-ferment	no	93.973	no

Availability in culture collections External links

[Ref.: #7149]

Culture collection no.

DSM 17706, ACM 3306, ATCC 35069, IMET 10545, NCIMB 11126, UNIQEM 60

[Ref.: #76677]

SI-ID 45971

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Non-linear dynamics of stable carbon and hydrogen isotope signatures based on a biological kinetic model of aerobic enzymatic methane oxidation.	Vavilin VA, Rytov SV, Shim N, Vogt C	Isotopes Environ Health Stud	10.1080/10256016.2016.1092965	2015	*
Metabolism	Partial oxidative conversion of methane to methanol through selective inhibition of methanol dehydrogenase in methanotrophic consortium from landfill cover soil.	Han JS, Ahn CM, Mahanty B, Kim CG	Appl Biochem Biotechnol	10.1007/s12010-013-0410-0	2013	*
Phylogeny	Methylocystis rosea sp. nov., a novel methanotrophic bacterium from Arctic wetland soil, Svalbard, Norway (78 degrees N).	Wartiainen I, Hestnes AG, McDonald IR, Svenning MM	Int J Syst Evol Microbiol	10.1099/ijs.0.63912-0	2006	*

References

#7149

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17706

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76677

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45971.1 )

* These data were automatically processed and therefore are not curated

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Methylosinus sporium strain DSM 17706

Methylosinus sporium strain DSM 17706

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