Name: Microvirga aerilata 5420S-16
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7203

Type strain:

Species: Microvirga aerilata

Strain Designation: 5420S-16

Culture col. no.: DSM 21343, KACC 12744, NBRC 106137

Strain history: <- S.-W. Kwon, KACC; 5420S-16 <- H.-Y. Weon

NCBI tax ID(s): 670292 (species)

SI-ID 403973

DSM 21343

Section

Microvirga aerilata 5420S-16 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from air.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Methylobacteriaceae*
	Genus	*Microvirga*
	Species	**Microvirga aerilata**
	Full Scientific Name (LPSN)	Microvirga aerilata Weon et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29689]	Gram stain	negative

[Ref.: #29689]	Cell length	1.6-3.3 µm

[Ref.: #29689]	Cell width	1.2-1.5 µm

[Ref.: #29689]	Cell shape	rod-shaped

[Ref.: #29689]	Motility	no

[Ref.: #29689]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15629]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #15629]

Culture medium growth

[Ref.: #15629]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15629]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #15629]	growth	28 °C
[Ref.: #29689]	growth	10-35 °C
[Ref.: #29689]	optimum	30 °C

[Ref.: #15629]	Temperature range	mesophilic
[Ref.: #29689]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29689]			optimum	07-10
[Ref.: #29689]			growth	07-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29689]

Oxygen tolerance

aerobe

[Ref.: #29689]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29689]		NaCl		growth	0-3	%
[Ref.: #29689]		NaCl		optimum	0-3	%

[Ref.: #29689]

Observation

aggregates in chains

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29689]		alkaline phosphatase	+	3.1.3.1
[Ref.: #29689]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15629]	Sample type/isolated from	air
[Ref.: #15629]	Geographic location (country and/or sea, region)	Suwon
[Ref.: #15629]	Country	Republic of Korea
[Ref.: #15629]	Country ISO 3 Code	KOR
[Ref.: #15629]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Air

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB682368 (>99% sequence identity) for Microvirga aerilata from Microbeatlas

Aquatic Samples	7
Soil Samples	19
Animal Samples	2
Plant Samples
Total Samples	28

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15629]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15629]	Microvirga aerilata strain 5420S-16 16S ribosomal RNA gene, partial sequence	GQ421849	1439	ENA	670292 tax ID
[Ref.: #20218]	Microvirga aerilata gene for 16S rRNA, partial sequence, strain: NBRC 106137	AB682368	1412	ENA	670292 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Microvirga aerilata 5420S-16	GCA_016743775	contig	GenBank	670292 tax ID	*

[Ref.: #15629]	GC-content	61.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29689]	GC-content	61.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microvirga aerilata 5420S-16 NCBI: GCA_016743775.1
[Ref.: #69480]	flagellated	no	94.709	no
[Ref.: #69480]	gram-positive	no	97.14	yes
[Ref.: #69480]	anaerobic	no	98.394	no
[Ref.: #69480]	aerobic	yes	92.561	yes
[Ref.: #69480]	halophile	no	91.08	no
[Ref.: #69480]	spore-forming	no	93.621	no
[Ref.: #69480]	thermophile	no	95.57	yes
[Ref.: #69480]	glucose-util	yes	89.101	no
[Ref.: #69480]	motile	no	83.605	no
[Ref.: #69480]	glucose-ferment	no	90.64	no

Availability in culture collections External links

[Ref.: #15629]

Culture collection no.

DSM 21343, KACC 12744, NBRC 106137

[Ref.: #76656]

SI-ID 403973

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microvirga jeongseonensis sp. nov., isolated from soil in South Korea.	Maeng S, Park Y, Oh H, Bang M, Baigalmaa J, Bai J, Kim MK	Arch Microbiol	10.1007/s00203-022-02791-3	2022	*
Phylogeny	Microvirga makkahensis sp. nov., and Microvirga arabica sp. nov., isolated from sandy arid soil.	Veyisoglu A, Tatar D, Saygin H, Inan K, Cetin D, Guven K, Tuncer M, Sahin N	Antonie Van Leeuwenhoek	10.1007/s10482-015-0631-z	2015	*
Phylogeny	Microvirga lupini sp. nov., Microvirga lotononidis sp. nov. and Microvirga zambiensis sp. nov. are alphaproteobacterial root-nodule bacteria that specifically nodulate and fix nitrogen with geographically and taxonomically separate legume hosts.	Ardley JK, Parker MA, De Meyer SE, Trengove RD, O'Hara GW, Reeve WG, Yates RJ, Dilworth MJ, Willems A, Howieson JG	Int J Syst Evol Microbiol	10.1099/ijs.0.035097-0	2011	*
Phylogeny	Description of Microvirga aerophila sp. nov. and Microvirga aerilata sp. nov., isolated from air, reclassification of Balneimonas flocculans Takeda et al. 2004 as Microvirga flocculans comb. nov. and emended description of the genus Microvirga.	Weon HY, Kwon SW, Son JA, Jo EH, Kim SJ, Kim YS, Kim BY, Ka JO	Int J Syst Evol Microbiol	10.1099/ijs.0.018770-0	2009	*

References

#15629

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21343

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#29689

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26074 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#76656

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403973.1 )

#26074

IJSEM 2596 2010 ( DOI 10.1099/ijs.0.018770-0 , PubMed 20023055 )

* These data were automatically processed and therefore are not curated

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