Name: Methylobacterium marchantiae JT1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7193

Type strain:

Species: Methylobacterium marchantiae

Strain Designation: JT1

Culture col. no.: DSM 21328, CCUG 56108

Strain history: <- P. Kämpfer, Univ. Giessen, Germany; JT1 <- S. Schauer

NCBI tax ID(s): 600331 (species)

SI-ID 404897

DSM 21328, CCUG 56108

Special Collections

Section

Methylobacterium marchantiae JT1 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from thallus of the liverwort Marchantia polymorpha L..

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Methylobacteriaceae*
	Genus	*Methylobacterium*
	Species	**Methylobacterium marchantiae**
	Full Scientific Name (LPSN)	Methylobacterium marchantiae Schauer et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #29827]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %96.833

[Ref.: #29827]	Cell length	2.9 µm

[Ref.: #29827]	Cell width	1.15 µm

[Ref.: #29827]	Cell shape	rod-shaped

[Ref.: #29827]	Motility	yes

[Ref.: #29827]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15615]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #15615]

Culture medium growth

[Ref.: #15615]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15615]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #15615]	growth	28 °C
[Ref.: #29827]	growth	4.0-32 °C
[Ref.: #29827]	optimum	27.5 °C

	pH	Kind of pH		pH
[Ref.: #29827]			optimum	7.2
[Ref.: #29827]			growth	6.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29827]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29827]		NaCl		growth	0.0-2.0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29827]	acetate ChEBI	+	carbon source
[Ref.: #29827]	aspartate ChEBI	+	carbon source
[Ref.: #29827]	citrate ChEBI	+	carbon source
[Ref.: #29827]	ethanol ChEBI	+	carbon source
[Ref.: #29827]	formate ChEBI	+	carbon source
[Ref.: #29827]	fructose ChEBI	+	carbon source
[Ref.: #29827]	glutamate ChEBI	+	carbon source
[Ref.: #29827]	glycerol ChEBI	+	carbon source
[Ref.: #29827]	succinate ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #29827]	catalase	+	1.11.1.6
[Ref.: #29827]	cytochrome oxidase	+	1.9.3.1
[Ref.: #29827]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15615]	Sample type/isolated from	thallus of the liverwort Marchantia polymorpha L.
[Ref.: #15615]	Host species	Marchantia polymorpha
[Ref.: #15615]	Geographic location (country and/or sea, region)	Bergpark Wilhelmshöhe near Kassel, about 500 m above sea level, 51° 19'N 9° 24' E
[Ref.: #15615]	Country	Germany
[Ref.: #15615]	Country ISO 3 Code	DEU
[Ref.: #15615]	Continent	Europe
[Ref.: #15615]	Geographic location	51.3167°/9.4167°

[Ref.: #60862]	Sample type/isolated from	Phyllospere (thallus) (Marchantia polymorpha)
[Ref.: #60862]	Sampling date	2003-10-01
[Ref.: #60862]	Geographic location (country and/or sea, region)	Kassel,Bergpark Wilhelmshöhe
[Ref.: #60862]	Country	Germany
[Ref.: #60862]	Country ISO 3 Code	DEU
[Ref.: #60862]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host

#Plants

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ157976 (>99% sequence identity) for Methylobacterium bullatum from Microbeatlas

Aquatic Samples	3552
Soil Samples	5760
Animal Samples	8689
Plant Samples	6346
Total Samples	24347

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15615]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15615]	Methylobacterium marchantiae strain JT1 collection-date 2003 from Germany 16S ribosomal RNA gene, partial sequence	FJ157976	1421	GenBank ENA	600331 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methylobacterium marchantiae DSM 21328	GCA_022179405	contig	GenBank ENA	600331 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methylobacterium marchantiae DSM 21328 NCBI: GCA_022179405.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.833	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	93.93	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.545	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.042	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.721	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	71.613	no

Availability in culture collections External links

[Ref.: #15615]

Culture collection no.

DSM 21328, CCUG 56108

[Ref.: #76646]

SI-ID 404897

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methylobacterium marchantiae sp. nov., a pink-pigmented, facultatively methylotrophic bacterium isolated from the thallus of a liverwort.	Schauer S, Kampfer P, Wellner S, Sproer C, Kutschera U	Int J Syst Evol Microbiol	10.1099/ijs.0.021915-0	2010	*

References

#15615

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21328

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29827

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26203 (see below)

#60862 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56108

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#76646

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404897.1 )

#26203

IJSEM 870 2011 ( DOI 10.1099/ijs.0.021915-0 , PubMed 20495043 )

* These data were automatically processed and therefore are not curated

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Methylobacterium marchantiae DSM 21328

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