Name: Methylobacterium tardum DSM 19566
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7187

Type strain:

Species: Methylobacterium tardum

Culture col. no.: DSM 19566, NBRC 103632, NCIMB 14380, RB 677

Strain history: <- Y. Kato, Microbiol. and Analytical Group, Food Res. Lab., Mitsui Norin Co. Ltd., Shizuoka, Japan; RB677

NCBI tax ID(s): 374432 (species)

SI-ID 407731

DSM 19566

Section

Methylobacterium tardum DSM 19566 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from water sample from a food factory.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Methylobacteriaceae*
	Genus	*Methylobacterium*
	Species	**Methylobacterium tardum**
	Full Scientific Name (LPSN)	Methylobacterium tardum Kato et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32496]	Gram stain	negative

[Ref.: #32496]	Cell length	3.55 µm

[Ref.: #32496]	Cell width	1.7 µm

[Ref.: #32496]	Cell shape	rod-shaped

[Ref.: #32496]	Motility	yes

[Ref.: #32496]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8181]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #8181]

Culture medium growth

[Ref.: #8181]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8181]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8181]	growth	28 °C
[Ref.: #32496]	growth	15-35 °C
[Ref.: #32496]	optimum	30 °C

[Ref.: #8181]	Temperature range	mesophilic
[Ref.: #32496]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32496]

Oxygen tolerance

aerobe

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32496]		arabinose ChEBI	+	carbon source
[Ref.: #32496]		fucose ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32496]		catalase	+	1.11.1.6
[Ref.: #32496]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8181]	Sample type/isolated from	water sample from a food factory
[Ref.: #8181]	Country	Japan
[Ref.: #8181]	Country ISO 3 Code	JPN
[Ref.: #8181]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Food
#Engineered	#Industrial	#Plant (Factory)
#Environmental	#Aquatic	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB252208 (>99% sequence identity) for Methylobacterium from Microbeatlas

Aquatic Samples	3355
Soil Samples	2361
Animal Samples	6178
Plant Samples	2438
Total Samples	14332

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8181]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8181]	Methylobacterium tardum gene for 16S rRNA, partial sequence, strain: RB677	AB252208	1434	ENA	374432 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methylobacterium tardum NBRC 103632	GCA_022179585	contig	GenBank	374432 tax ID	*
[Ref.: #66792]	Methylobacterium tardum DSM 19566	GCA_023546765	complete	GenBank	374432 tax ID	*

[Ref.: #8181]	GC-content	69.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #32496]	GC-content	69.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methylobacterium tardum DSM 19566 NCBI: GCA_023546765.1
[Ref.: #69480]	flagellated	no	71.583	no
[Ref.: #69480]	gram-positive	no	97.348	yes
[Ref.: #69480]	anaerobic	no	98.392	yes
[Ref.: #69480]	aerobic	yes	91.915	yes
[Ref.: #69480]	halophile	no	92.914	no
[Ref.: #69480]	spore-forming	no	93.014	no
[Ref.: #69480]	motile	yes	88.488	yes
[Ref.: #69480]	glucose-ferment	no	89.089	no
[Ref.: #69480]	thermophile	no	99.494	yes
[Ref.: #69480]	glucose-util	yes	90.398	no

Availability in culture collections External links

[Ref.: #8181]

Culture collection no.

DSM 19566, NBRC 103632, NCIMB 14380, RB 677

[Ref.: #76640]

SI-ID 407731

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methylobacterium persicinum sp. nov., Methylobacterium komagatae sp. nov., Methylobacterium brachiatum sp. nov., Methylobacterium tardum sp. nov. and Methylobacterium gregans sp. nov., isolated from freshwater.	Kato Y, Asahara M, Goto K, Kasai H, Yokota A	Int J Syst Evol Microbiol	10.1099/ijs.0.65583-0	2008	*

References

#8181

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19566

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32496

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28716 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#76640

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407731.1 )

#28716

IJSEM 1134 2008 ( DOI 10.1099/ijs.0.65583-0 , PubMed 18450702 )

* These data were automatically processed and therefore are not curated

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