Name: Methylobacterium iners 5317S-33
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7183

Type strain:

Species: Methylobacterium iners

Strain Designation: 5317S-33

Culture col. no.: DSM 19015, KACC 11765, JCM 16407

Strain history: KACC 11765 <-- H.-Y. Weon 5317S-33.

NCBI tax ID(s): 418707 (species)

SI-ID 323974

DSM 19015, KACC 11765, JCM 16407, LMG 28248, NCIMB 14630

Section

Methylobacterium iners 5317S-33 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from air sample.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Methylobacteriaceae*
	Genus	*Methylobacterium*
	Species	**Methylobacterium iners**
	Full Scientific Name (LPSN)	Methylobacterium iners Weon et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32155]	Gram stain	negative

[Ref.: #32155]	Cell length	2 µm

[Ref.: #32155]	Cell width	1 µm

[Ref.: #32155]	Cell shape	rod-shaped

[Ref.: #32155]	Motility	yes

[Ref.: #32155]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7832]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7832]

Culture medium growth

[Ref.: #7832]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7832]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7832]	growth	30 °C
[Ref.: #32155]	growth	10-30 °C
[Ref.: #32155]	optimum	26.5 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #7832]	Temperature range	mesophilic
[Ref.: #32155]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32155]			optimum	7
[Ref.: #32155]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32155]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32155]		NaCl		growth	<2	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32155]	acetate ChEBI	+	carbon source
[Ref.: #32155]	asparagine ChEBI	+	carbon source
[Ref.: #32155]	aspartate ChEBI	+	carbon source
[Ref.: #32155]	formate ChEBI	+	carbon source
[Ref.: #32155]	glutamate ChEBI	+	carbon source
[Ref.: #32155]	lactate ChEBI	+	carbon source
[Ref.: #32155]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #32155]	propionate ChEBI	+	carbon source
[Ref.: #32155]	succinate ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32155]		catalase	+	1.11.1.6
[Ref.: #32155]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7832]	Sample type/isolated from	air sample
[Ref.: #7832]	Geographic location (country and/or sea, region)	Suwon city
[Ref.: #7832]	Country	Republic of Korea
[Ref.: #7832]	Country ISO 3 Code	KOR
[Ref.: #7832]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Air sample in Suwon City
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Air

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7832]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7832]	Methylobacterium iners strain 5317S-33 16S ribosomal RNA gene, partial sequence	EF174497	1353	ENA	418707 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methylobacterium iners DSM 19015	GCA_022179305	contig	GenBank	418707 tax ID	*

[Ref.: #7832]	GC-content	68.0 mol%
[Ref.: #32155]	GC-content	68 mol%
[Ref.: #67770]	GC-content	68 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methylobacterium iners DSM 19015 NCBI: GCA_022179305.1
[Ref.: #69480]	flagellated	no	70.344	no
[Ref.: #69480]	gram-positive	no	97.918	no
[Ref.: #69480]	anaerobic	no	97.428	yes
[Ref.: #69480]	aerobic	yes	90.928	yes
[Ref.: #69480]	halophile	no	93.617	no
[Ref.: #69480]	spore-forming	no	93.626	no
[Ref.: #69480]	motile	yes	86.296	no
[Ref.: #69480]	glucose-ferment	no	89.938	no
[Ref.: #69480]	thermophile	no	98.305	yes
[Ref.: #69480]	glucose-util	yes	83.985	no

Availability in culture collections External links

[Ref.: #7832]

Culture collection no.

DSM 19015, KACC 11765, JCM 16407

[Ref.: #76636]

SI-ID 323974

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methylobacterium oxalidis sp. nov., isolated from leaves of Oxalis corniculata.	Tani A, Sahin N, Kimbara K	Int J Syst Evol Microbiol	10.1099/ijs.0.033019-0	2011	*
Phylogeny	Methylobacterium gossipiicola sp. nov., a pink-pigmented, facultatively methylotrophic bacterium isolated from the cotton phyllosphere.	Madhaiyan M, Poonguzhali S, Senthilkumar M, Lee JS, Lee KC	Int J Syst Evol Microbiol	10.1099/ijs.0.030148-0	2011	*
Phylogeny	Methylobacterium iners sp. nov. and Methylobacterium aerolatum sp. nov., isolated from air samples in Korea.	Weon HY, Kim BY, Joa JH, Son JA, Song MH, Kwon SW, Go SJ, Yoon SH	Int J Syst Evol Microbiol	10.1099/ijs.0.65047-0	2008	*

References

#7832

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19015

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32155

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28398 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#76636

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID323974.1 )

#28398

IJSEM 93 2008 ( DOI 10.1099/ijs.0.65047-0 , PubMed 18175690 )

* These data were automatically processed and therefore are not curated

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Methylobacterium iners DSM 19015

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