Name: Methylobacterium aerolatum 5413S-11
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7182

Type strain:

Species: Methylobacterium aerolatum

Strain Designation: 5413S-11

Culture col. no.: DSM 19013, KACC 11766, JCM 16406

Strain history: KACC 11766 <-- H.-Y. Weon 5413S-11.

NCBI tax ID(s): 418708 (species)

SI-ID 401352

DSM 19013

Section

Methylobacterium aerolatum 5413S-11 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from air sample.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Methylobacteriaceae*
	Genus	*Methylobacterium*
	Species	**Methylobacterium aerolatum**
	Full Scientific Name (LPSN)	Methylobacterium aerolatum Weon et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32155]	Gram stain	negative

[Ref.: #32155]	Cell length	2.25 µm

[Ref.: #32155]	Cell width	1 µm

[Ref.: #32155]	Cell shape	rod-shaped

[Ref.: #32155]	Motility	yes

[Ref.: #32155]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7831]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7831]

Culture medium growth

[Ref.: #7831]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7831]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7831]	growth	30 °C
[Ref.: #32155]	growth	10-35 °C
[Ref.: #32155]	optimum	28 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #7831]	Temperature range	mesophilic
[Ref.: #32155]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32155]			optimum	7
[Ref.: #32155]			growth	05-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32155]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32155]		NaCl		growth	<2	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32155]	formate ChEBI	+	carbon source
[Ref.: #32155]	glycerol ChEBI	+	carbon source
[Ref.: #32155]	lactate ChEBI	+	carbon source
[Ref.: #32155]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #32155]	succinate ChEBI	+	carbon source

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32155]		catalase	+	1.11.1.6
[Ref.: #32155]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7831]	Sample type/isolated from	air sample
[Ref.: #7831]	Geographic location (country and/or sea, region)	Suwon city
[Ref.: #7831]	Country	Republic of Korea
[Ref.: #7831]	Country ISO 3 Code	KOR
[Ref.: #7831]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Air sample in Suwon City
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Air

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF174498 (>99% sequence identity) for Methylobacterium from Microbeatlas

Aquatic Samples	31
Soil Samples	30
Animal Samples	129
Plant Samples	28
Total Samples	218

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7831]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7831]	Methylobacterium aerolatum strain 5413S-11 16S ribosomal RNA gene, partial sequence	EF174498	1332	ENA	418708 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methylobacterium aerolatum DSM 19013	2928195108	draft	JGI IMG/M	418708 tax ID	*
[Ref.: #66792]	Methylobacterium aerolatum DSM 19013	GCA_022179085	contig	GenBank	418708 tax ID	*

[Ref.: #7831]	GC-content	73.2 mol%
[Ref.: #67770]	GC-content	73.2 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #7831]

Culture collection no.

DSM 19013, KACC 11766, JCM 16406

[Ref.: #76635]

SI-ID 401352

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methylobacterium iners sp. nov. and Methylobacterium aerolatum sp. nov., isolated from air samples in Korea.	Weon HY, Kim BY, Joa JH, Son JA, Song MH, Kwon SW, Go SJ, Yoon SH	Int J Syst Evol Microbiol	10.1099/ijs.0.65047-0	2008	*

References

#7831

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19013

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32155

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28398 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#76635

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401352.1 )

#28398

IJSEM 93 2008 ( DOI 10.1099/ijs.0.65047-0 , PubMed 18175690 )

* These data were automatically processed and therefore are not curated

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