Methylobacterium radiotolerans (DSM 1819, ATCC 27329, CIP 101128)

Name: Methylobacterium radiotolerans (DSM 1819, ATCC 27329, CIP 101128)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7152

Type strain

Strain Designation 0-1

Culture col. no. DSM 1819 ATCC 27329 CIP 101128 IAM 12098 CCUG 55904 7 more

NCBI tax ID(s) 426355 31998

Special Collections DSMZ CCUG JCM CIP

History <- IAM <- H. Iizuka, 0-1 IAM 12098 <-- H. Ito and H. Iizuka strain O-1.

Links

Methylobacterium radiotolerans 0-1 is an aerobe bacterium that was isolated from japanese unhulled rice.

aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 3562

LMG 2269,ATCC 27329,DSM 1819,IAM 12098,NCIB 10815,CIP 101128,JCM 2831,IFO 15690,NCIMB 10815,CCM 4461,VKM B-2144,NBRC 15690,BCRC 17094,CCRC 17094,CCUG 55904

@ref 20215

Last LPSN update 2026-02-09 11:19:24

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Methylobacteriaceae

Genus Methylobacterium

Species Methylobacterium radiotolerans

Full scientific name Methylobacterium radiotolerans corrig. (Ito and Iizuka 1971) Green and Bousfield 1983

Synonyms (2)

Methylobacterium radiora
Pseudomonas radiora

BacDive ID	Other strains from **Methylobacterium radiotolerans** (6)	Type strain
131757	M. radiotolerans Stev6, DSM 103046
131758	M. radiotolerans Stev28, DSM 103052
153091	M. radiotolerans CCUG 48452
153137	M. radiotolerans CCUG 48553
154672	M. radiotolerans CCUG 54801
163488	M. radiotolerans JCM 2830, IAM 12099, LMG 2270

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	97.833

Colony morphology

60784

Incubation period2 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
666	NUTRIENT AGAR (DSMZ Medium 1)		Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1; with strain-specific modifications) Composition: Agar 15.0 g/l Methanol 10.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
666	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
666	positive	growth	28
60784	positive	growth	30
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
60784	aerobe
125439	obligate aerobe	94

Spore formation

@ref	Spore formation	Confidence
125439		95

Compound production

666

Compoundbacteriochlorophyll

Observation

67770

Observationquinones: Q-10

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	starch degradation	100	10 of 10
66794	formaldehyde oxidation	100	3 of 3
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	glycolate and glyoxylate degradation	100	6 of 6
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	Entner Doudoroff pathway	100	10 of 10
66794	cardiolipin biosynthesis	100	7 of 7
66794	threonine metabolism	100	10 of 10
66794	ethanol fermentation	100	2 of 2
66794	acetate fermentation	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	L-lactaldehyde degradation	100	3 of 3
66794	butanoate fermentation	100	4 of 4
66794	biotin biosynthesis	100	4 of 4
66794	valine metabolism	100	9 of 9
66794	adipate degradation	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	lactate fermentation	100	4 of 4
66794	suberin monomers biosynthesis	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	methane metabolism	100	3 of 3
66794	taurine degradation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	ceramide biosynthesis	100	1 of 1
66794	cyanate degradation	100	3 of 3
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	gluconeogenesis	100	8 of 8
66794	sulfopterin metabolism	100	4 of 4
66794	tetrahydrofolate metabolism	92.86	13 of 14
66794	photosynthesis	92.86	13 of 14
66794	glutathione metabolism	92.86	13 of 14
66794	phenylalanine metabolism	92.31	12 of 13
66794	leucine metabolism	92.31	12 of 13
66794	degradation of aromatic, nitrogen containing compounds	91.67	11 of 12
66794	pentose phosphate pathway	90.91	10 of 11
66794	propionate fermentation	90	9 of 10
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	d-mannose degradation	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	allantoin degradation	88.89	8 of 9
66794	vitamin B12 metabolism	88.24	30 of 34
66794	isoleucine metabolism	87.5	7 of 8
66794	citric acid cycle	85.71	12 of 14
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	selenocysteine biosynthesis	83.33	5 of 6
66794	alanine metabolism	82.76	24 of 29
66794	proline metabolism	81.82	9 of 11
66794	purine metabolism	80.85	76 of 94
66794	cellulose degradation	80	4 of 5
66794	methanofuran biosynthesis	80	4 of 5
66794	ethylmalonyl-CoA pathway	80	4 of 5
66794	gallate degradation	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	degradation of sugar acids	80	20 of 25
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	vitamin B1 metabolism	76.92	10 of 13
66794	urea cycle	76.92	10 of 13
66794	pyrimidine metabolism	75.56	34 of 45
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	ketogluconate metabolism	75	6 of 8
66794	phenol degradation	75	15 of 20
66794	dTDPLrhamnose biosynthesis	75	6 of 8
66794	non-pathway related	73.68	28 of 38
66794	flavin biosynthesis	73.33	11 of 15
66794	methionine metabolism	73.08	19 of 26
66794	vitamin B6 metabolism	72.73	8 of 11
66794	oxidative phosphorylation	72.53	66 of 91
66794	cysteine metabolism	72.22	13 of 18
66794	chlorophyll metabolism	72.22	13 of 18
66794	heme metabolism	71.43	10 of 14
66794	propanol degradation	71.43	5 of 7
66794	tryptophan metabolism	71.05	27 of 38
66794	lipid metabolism	70.97	22 of 31
66794	glycolysis	70.59	12 of 17
66794	sulfate reduction	69.23	9 of 13
66794	octane oxidation	66.67	2 of 3
66794	3-phenylpropionate degradation	66.67	10 of 15
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	IAA biosynthesis	66.67	2 of 3
66794	arginine metabolism	66.67	16 of 24
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	degradation of pentoses	64.29	18 of 28
66794	carotenoid biosynthesis	63.64	14 of 22
66794	metabolism of disaccharids	63.64	7 of 11
66794	degradation of sugar alcohols	62.5	10 of 16
66794	histidine metabolism	62.07	18 of 29
66794	lysine metabolism	61.9	26 of 42
66794	polyamine pathway	60.87	14 of 23
66794	lipoate biosynthesis	60	3 of 5
66794	vitamin K metabolism	60	3 of 5
66794	glycine metabolism	60	6 of 10
66794	hydrogen production	60	3 of 5
66794	4-hydroxyphenylacetate degradation	60	6 of 10
66794	bile acid biosynthesis, neutral pathway	58.82	10 of 17
66794	androgen and estrogen metabolism	56.25	9 of 16
66794	nitrate assimilation	55.56	5 of 9
66794	4-hydroxymandelate degradation	55.56	5 of 9
66794	toluene degradation	50	2 of 4
66794	ribulose monophosphate pathway	50	1 of 2
66794	ascorbate metabolism	50	11 of 22
66794	phenylmercury acetate degradation	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	carnitine metabolism	50	4 of 8
66794	pantothenate biosynthesis	50	3 of 6
66794	coenzyme M biosynthesis	50	5 of 10
66794	tyrosine metabolism	50	7 of 14
66794	kanosamine biosynthesis II	50	1 of 2
66794	cyclohexanol degradation	50	2 of 4
66794	methanogenesis from CO2	50	6 of 12
66794	myo-inositol biosynthesis	50	5 of 10
66794	quinate degradation	50	1 of 2
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	d-xylose degradation	45.45	5 of 11
66794	cholesterol biosynthesis	45.45	5 of 11
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	aclacinomycin biosynthesis	42.86	3 of 7
66794	glycine betaine biosynthesis	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	elloramycin biosynthesis	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	creatinine degradation	40	2 of 5
66794	degradation of hexoses	38.89	7 of 18
66794	arachidonic acid metabolism	38.89	7 of 18
66794	sphingosine metabolism	33.33	2 of 6
66794	enterobactin biosynthesis	33.33	1 of 3
66794	sulfoquinovose degradation	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	alginate biosynthesis	25	1 of 4
66794	phenylpropanoid biosynthesis	23.08	3 of 13

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Plant	#Fruit (Seed)

Isolation

@ref	Sample type
666	japanese unhulled rice
60784	Rice grains,normal unpolished and commercial rice
67770	Japanese unhulled old rice

Taxonmaps

69479

Global distribution of 16S sequence D32227 (>99% sequence identity) for Methylobacterium from Microbeatlas

Aquatic Samples	3355
Soil Samples	2361
Animal Samples	6178
Plant Samples	2438
Total Samples	14332

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
666	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1972v1 assembly for Methylobacterium radiotolerans JCM 2831	complete	GCA_000019725	426355.14	641522638	426355	97.99
67770	ASM799105v1 assembly for Methylobacterium radiotolerans NBRC 15690	contig	GCA_007991055	31998.58	8117313949	31998	45.47

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Methylobacterium radiotolerans gene for 16S ribosomal RNA, partial sequence, strain:DSM 1819	AB175640	1433	426355
20218	Methylobacterium radiotolerans gene for 16S ribosomal RNA, partial sequence, strain:IAM 12098	AB175641	1433	426355
20218	Methylobacterium radiotolerans partial 16S rRNA gene, strain IAM 12098	AJ400911	667	426355
20218	Methylobacterium radiotolerans gene for 16S rRNA, strain: JCM 2831	D32227	1400	426355
124043	Methylobacterium radiotolerans JCM 2831 partial 16S rRNA gene, strain JC375, isolate (PP)	LT985974	876	426355

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Methylobacterium radiotolerans JCM 2831
NCBI: GCA_000019725

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	95.00	no
125439	motility	BacteriaNetⓘ	yes	61.00	no
125439	gram_stain	BacteriaNetⓘ	negative	87.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Methylobacterium radiotolerans JCM 2831 JCM 2831
NCBI: GCA_000019725.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.83	no
125438	anaerobic	anaerobicⓘ	no	96.22	yes
125438	aerobic	aerobicⓘ	yes	89.40	no
125438	spore-forming	spore-formingⓘ	no	85.91	no
125438	thermophilic	thermophileⓘ	no	98.49	yes
125438	flagellated	motile2+ⓘ	yes	74.31	no

Literature

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Genetics	Draft genome sequence of the highly copper-tolerant Methylobacterium radiotolerans MLP1 isolated from the rhizosphere of grasses adjacent to mine tailings.	Davalos A, Lozano-Aguirre Beltran LF, Garcia-de Los Santos A.	Microbiol Resour Announc	10.1128/mra.00361-23	2023
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Biotechnology	Bacterial Species in Engineered Living Materials: Strategies and Future Directions.	Wang H, Li C, Wang Y, Zhang H.	Microb Biotechnol	10.1111/1751-7915.70164	2025
Metabolism	Emerging Role of Gut Microbiota in Breast Cancer Development and Its Implications in Treatment.	Mir R, Albarqi SA, Albalawi W, Alatwi HE, Alatawy M, Bedaiwi RI, Almotairi R, Husain E, Zubair M, Alanazi G, Alsubaie SS, Alghabban RI, Alfifi KA, Bashir S.	Metabolites	10.3390/metabo14120683	2024
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Phylogeny	Efficient methanol-degrading aerobic bacteria isolated from a wetland ecosystem.	Thulasi K, Jayakumar A, Balakrishna Pillai A, Gopalakrishnapillai Sankaramangalam VK, Kumarapillai H.	Arch Microbiol	10.1007/s00203-018-1509-z	2018
Genetics	Active herpesviruses are associated with intensive care unit (ICU) admission in patients pulmonary infection and alter the respiratory microbiome.	Liu Z, Qi CJ, Shi Y, Li T, Fang Y, Zhang Q.	Front Microbiol	10.3389/fmicb.2024.1441476	2024
Genetics	Composition, antibiotic resistance, and virulence analysis of microbiota in dormitory drain pipes.	Hu Y, Zhang K, Li N, Wang S.	Front Microbiol	10.3389/fmicb.2023.1272605	2023
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Genetics	Time and temperature influence on physicochemical, microbiological, and sensory profiles of yerba mate kombucha.	Treviso RL, Sant'Anna V, Fabricio MF, Ayub MAZ, Brandelli A, Hickert LR.	J Food Sci Technol	10.1007/s13197-024-05951-z	2024
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Phylogeny	Cabbage looper (Trichoplusia ni Hübner) labial glands contain unique bacterial flora in contrast with their alimentary canal, mandibular glands, and Malpighian tubules.	Lawrence SD, Novak NG, Shao J, Ghosh SKB, Blackburn MB.	Microbiologyopen	10.1002/mbo3.994	2020
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Phylogeny	Morphological and molecular characterization of bacterial endophytes from Centella asiatica leaves.	Mahlangu SG, Tai SL.	J Genet Eng Biotechnol	10.1186/s43141-022-00456-8	2022
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Phylogeny	Enriching Beneficial Microbial Diversity of Indoor Plants and Their Surrounding Built Environment With Biostimulants.	Mahnert A, Haratani M, Schmuck M, Berg G.	Front Microbiol	10.3389/fmicb.2018.02985	2018
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Biotechnology	Industrially-Scalable Microencapsulation of Plant Beneficial Bacteria in Dry Cross-Linked Alginate Matrix.	Strobel SA, Allen K, Roberts C, Jimenez D, Scher HB, Jeoh T.	Ind Biotechnol (New Rochelle N Y)	10.1089/ind.2017.0032	2018
Enzymology	Glycine betaine metabolism is enabled in Methylorubrum extorquens PA1 by alterations to dimethylglycine dehydrogenase.	Hying ZT, Miller TJ, Loh CY, Bazurto JV.	Appl Environ Microbiol	10.1128/aem.02090-23	2024
	Molecular Mechanisms Contributing Bacterial Infections to the Incidence of Various Types of Cancer.	Sheweita SA, Alsamghan AS.	Mediators Inflamm	10.1155/2020/4070419	2020
	Intratumoral Microbiota: Insights from Anatomical, Molecular, and Clinical Perspectives.	Lombardo C, Fazio R, Sinagra M, Gattuso G, Longo F, Lombardo C, Salmeri M, Zanghi GN, Loreto CAE.	J Pers Med	10.3390/jpm14111083	2024
Cultivation	Validation of the BacT/ALERT(R) 3D System for Rapid Sterility Testing of Biopharmaceutical Samples.	Jimenez L, Rana N, Amalraj J, Walker K, Travers K.	PDA J Pharm Sci Technol	10.5731/pdajpst.2012.00790	2012
	In silico analyses of conservational, functional and phylogenetic distribution of the LuxI and LuxR homologs in Gram-positive bacteria.	Rajput A, Kumar M.	Sci Rep	10.1038/s41598-017-07241-5	2017
	E. coli Secretome Metabolically Modulates MDA-MB-231 Breast Cancer Cells' Energy Metabolism.	AlMalki RH, Sebaa R, Al-Ansari MM, Al-Alwan M, Alwehaibi MA, Rahman AMA.	Int J Mol Sci	10.3390/ijms24044219	2023
	Human Breast Tissue Microbiota Reveals Unique Microbial Signatures that Correlate with Prognostic Features in Adult Ethiopian Women with Breast Cancer.	Desalegn Z, Smith A, Yohannes M, Cao X, Anberber E, Bekuretsion Y, Assefa M, Bauer M, Vetter M, Kantelhardt EJ, Abebe T, Starlard-Davenport A.	Cancers (Basel)	10.3390/cancers15194893	2023
Enzymology	Microbial biofilms on the sandstone monuments of the Angkor Wat Complex, Cambodia.	Gaylarde CC, Rodriguez CH, Navarro-Noya YE, Ortega-Morales BO.	Curr Microbiol	10.1007/s00284-011-0034-y	2012
	Scandium, yttrium, and lanthanide occurrence in Cantharellus cibarius and C. minor mushrooms.	Medyk M, Falandysz J, Nnorom IC.	Environ Sci Pollut Res Int	10.1007/s11356-023-25210-6	2023
	Exploring the human microbiome - A step forward for precision medicine in breast cancer.	Jotshi A, Sukla KK, Haque MM, Bose C, Varma B, Koppiker CB, Joshi S, Mishra R.	Cancer Rep (Hoboken)	10.1002/cnr2.1877	2023
	Interactions of plant-beneficial bacteria with the ascomycete Coniochaeta ligniaria.	Trifonova R, Postma J, van Elsas JD.	J Appl Microbiol	10.1111/j.1365-2672.2009.04163.x	2009
	In-Silico Characterization of Estrogen Reactivating beta-Glucuronidase Enzyme in GIT Associated Microbiota of Normal Human and Breast Cancer Patients.	Muccee F, Ghazanfar S, Ajmal W, Al-Zahrani M.	Genes (Basel)	10.3390/genes13091545	2022
	Characterization of 1-aminocyclopropane-1-carboxylate deaminase producing methylobacteria from phyllosphere of rice and their role in ethylene regulation	Chinnadurai C, Balachandar D, Sundaram SP.	World J Microbiol Biotechnol	10.1007/s11274-009-0027-1	2009
Phylogeny	Microbiome analysis of the restricted bacteria in radioactive element-containing water at the Fukushima Daiichi Nuclear Power Station.	Warashina T, Sato A, Hinai H, Shaikhutdinov N, Shagimardanova E, Mori H, Tamaki S, Saito M, Sanada Y, Sasaki Y, Shimada K, Dotsuta Y, Kitagaki T, Maruyama S, Gusev O, Narumi I, Kurokawa K, Morita T, Ebisuzaki T, Nishimura A, Koma Y, Kanai A.	Appl Environ Microbiol	10.1128/aem.02113-23	2024
Genetics	Genomic Resource of Rice Seed Associated Bacteria.	Midha S, Bansal K, Sharma S, Kumar N, Patil PP, Chaudhry V, Patil PB.	Front Microbiol	10.3389/fmicb.2015.01551	2015
	Colonization of torrefied grass fibers by plant-beneficial microorganisms	Trifonova R, Babini V, Postma J, Ketelaars JJMH, van Elsas JD.	Appl Soil Ecol	10.1016/j.apsoil.2008.09.005	2009
	Degradation of the herbicide sulfentrazone in a Brazilian Typic Hapludox soil	Martinez CO, Silva CMMS, Fay EF, Maia AdHN, Abakerli RB, Durrant LR.	Soil Biol Biochem	10.1016/j.soilbio.2007.10.016	2008
	Beyond the snapshot: identification of the timeless, enduring indicator microbiome informing soil fertility and crop production in alkaline soils.	Zhang J, Dolfing J, Liu W, Chen R, Zhang J, Lin X, Feng Y.	Environ Microbiome	10.1186/s40793-022-00420-6	2022
	Thermally treated grass fibers as colonizable substrate for beneficial bacterial inoculum.	Trifonova R, Postma J, Ketelaars JJ, van Elsas JD.	Microb Ecol	10.1007/s00248-008-9376-9	2008
	Comprehensive human amniotic fluid metagenomics supports the sterile womb hypothesis.	Wang H, Yang GX, Hu Y, Lam P, Sangha K, Siciliano D, Swenerton A, Miller R, Tilley P, Von Dadelszen P, Kalyan S, Tang P, Patel MS.	Sci Rep	10.1038/s41598-022-10869-7	2022
Metabolism	Removal of phytotoxic compounds from torrefied grass fibres by plant-beneficial microorganisms.	Trifonova R, Postma J, Verstappen FW, Bouwmeester HJ, Ketelaars JJ, van Elsas JD.	FEMS Microbiol Ecol	10.1111/j.1574-6941.2008.00508.x	2008
Phylogeny	Isolation and characterization of endophytic bacteria from tomato foliage and their in vitro efficacy against root-knot nematodes.	Basumatary B, Das D, Choudhury BN, Dutta P, Bhattacharyya A.	J Nematol	10.21307/jofnem-2021-104	2021
Enzymology	Culture-independent assessment of Rhizobiales-related alphaproteobacteria and the diversity of Methylobacterium in the rhizosphere and rhizoplane of transgenic eucalyptus.	Andreote FD, Carneiro RT, Salles JF, Marcon J, Labate CA, Azevedo JL, Araujo WL.	Microb Ecol	10.1007/s00248-008-9405-8	2009
Pathogenicity	Breast and Gut Microbiota Action Mechanisms in Breast Cancer Pathogenesis and Treatment.	Laborda-Illanes A, Sanchez-Alcoholado L, Dominguez-Recio ME, Jimenez-Rodriguez B, Lavado R, Comino-Mendez I, Alba E, Queipo-Ortuno MI.	Cancers (Basel)	10.3390/cancers12092465	2020
Pathogenicity	Impact of Phyllosphere Methylobacterium on Host Rice Landraces.	Sanjenbam P, Shivaprasad PV, Agashe D.	Microbiol Spectr	10.1128/spectrum.00810-22	2022
	Tumor microbiome: roles in tumor initiation, progression, and therapy.	Zhang S, Huang J, Jiang Z, Tong H, Ma X, Liu Y.	Mol Biomed	10.1186/s43556-025-00248-9	2025
	Diversity and antimicrobial potential of the culturable rhizobacteria from medicinal plant Baccharis trimera Less D.C.	Jardim ACM, de Oliveira JE, Alves LM, Gutuzzo GO, de Oliveira ALM, Rodrigues EP.	Braz J Microbiol	10.1007/s42770-022-00759-5	2022
Enzymology	Bioprospecting Plant Growth Promoting Rhizobacteria for Enhancing the Biological Properties and Phytochemical Composition of Medicinally Important Crops.	Rizvi A, Ahmed B, Khan MS, El-Beltagi HS, Umar S, Lee J.	Molecules	10.3390/molecules27041407	2022
	Temporal Dynamics of Endogenous Bacterial Composition in Rice Seeds During Maturation and Storage, and Spatial Dynamics of the Bacteria During Seedling Growth.	Dutta S, Choi SY, Lee YH.	Front Microbiol	10.3389/fmicb.2022.877781	2022
Phylogeny	Origin Sample Prediction and Spatial Modeling of Antimicrobial Resistance in Metagenomic Sequencing Data.	Zhelyazkova M, Yordanova R, Mihaylov I, Kirov S, Tsonev S, Danko D, Mason C, Vassilev D.	Front Genet	10.3389/fgene.2021.642991	2021
	Microbial dysbiosis is associated with human breast cancer.	Xuan C, Shamonki JM, Chung A, Dinome ML, Chung M, Sieling PA, Lee DJ.	PLoS One	10.1371/journal.pone.0083744	2014
Genetics	Characterization of Spacesuit Associated Microbial Communities and Their Implications for NASA Missions.	Danko D, Malli Mohan GB, Sierra MA, Rucker M, Singh NK, Regberg AB, Bell MS, O'Hara NB, Ounit R, Mason CE, Venkateswaran K.	Front Microbiol	10.3389/fmicb.2021.608478	2021
	Energetic Basis of Microbial Growth and Persistence in Desert Ecosystems.	Leung PM, Bay SK, Meier DV, Chiri E, Cowan DA, Gillor O, Woebken D, Greening C.	mSystems	10.1128/msystems.00495-19	2020
Enzymology	Isolation and 16S DNA characterization of soil microorganisms from tropical soils capable of utilizing the herbicides hexazinone and tebuthiuron.	Mostafa FI, Helling CS.	J Environ Sci Health B	10.1081/pfc-120025579	2003
	Systematic Search for Evidence of Interdomain Horizontal Gene Transfer from Prokaryotes to Oomycete Lineages.	McCarthy CG, Fitzpatrick DA.	mSphere	10.1128/msphere.00195-16	2016
	Diagnostic and prognostic potential of the microbiome in ovarian cancer treatment response.	Asangba AE, Chen J, Goergen KM, Larson MC, Oberg AL, Casarin J, Multinu F, Kaufmann SH, Mariani A, Chia N, Walther-Antonio MRS.	Sci Rep	10.1038/s41598-023-27555-x	2023
Genetics	Genomic Metrics Applied to Rhizobiales (Hyphomicrobiales): Species Reclassification, Identification of Unauthentic Genomes and False Type Strains.	Volpiano CG, Sant'Anna FH, Ambrosini A, de Sao Jose JFB, Beneduzi A, Whitman WB, de Souza EM, Lisboa BB, Vargas LK, Passaglia LMP.	Front Microbiol	10.3389/fmicb.2021.614957	2021
	Uncovering Microbial Composition in Human Breast Cancer Primary Tumour Tissue Using Transcriptomic RNA-seq.	Hadzega D, Minarik G, Karaba M, Kalavska K, Benca J, Ciernikova S, Sedlackova T, Nemcova P, Bohac M, Pindak D, Klucar L, Mego M.	Int J Mol Sci	10.3390/ijms22169058	2021
Genetics	Metagenomic analysis of the dynamical conversion of photosynthetic bacterial communities in different crop fields over different growth periods.	Cheng JE, Su P, Zhang ZH, Zheng LM, Wang ZY, Hamid MR, Dai JP, Du XH, Chen LJ, Zhai ZY, Kong XT, Liu Y, Zhang DY.	PLoS One	10.1371/journal.pone.0262517	2022
	Tumor microbiome - an integral part of the tumor microenvironment.	Ciernikova S, Sevcikova A, Stevurkova V, Mego M.	Front Oncol	10.3389/fonc.2022.1063100	2022
	Stress tolerance of Methylobacterium biofilms in bathrooms.	Yano T, Kubota H, Hanai J, Hitomi J, Tokuda H.	Microbes Environ	10.1264/jsme2.me12146	2013
Enzymology	A Methylobacterium-like organism from algal crusts covering silicone rubber electric insulators in Africa.	Zarnowski R, Felske A, Ellis RJ, Geuns JM, Pietr SJ.	J Appl Microbiol	10.1046/j.1365-2672.2002.01781.x	2002
	Comparative Metagenomics Reveals Microbial Signatures of Sugarcane Phyllosphere in Organic Management.	Khoiri AN, Cheevadhanarak S, Jirakkakul J, Dulsawat S, Prommeenate P, Tachaleat A, Kusonmano K, Wattanachaisaereekul S, Sutheeworapong S.	Front Microbiol	10.3389/fmicb.2021.623799	2021
Genetics	Microbial Diversity in the Phyllosphere and Rhizosphere of an Apple Orchard Managed under Prolonged "Natural Farming" Practices.	He YH, Adkar-Purushothama CR, Ito T, Shirakawa A, Yamamoto H, Kashiwagi A, Tatewaki A, Fujibayashi M, Sugiyama S, Yaginuma K, Akahira T, Yamamoto S, Tsushima S, Matsushita Y, Sano T.	Microorganisms	10.3390/microorganisms9102056	2021
Metabolism	Facile Arsenazo III-Based Assay for Monitoring Rare Earth Element Depletion from Cultivation Media for Methanotrophic and Methylotrophic Bacteria.	Hogendoorn C, Roszczenko-Jasinska P, Martinez-Gomez NC, de Graaff J, Grassl P, Pol A, Op den Camp HJM, Daumann LJ.	Appl Environ Microbiol	10.1128/aem.02887-17	2018
Metabolism	The Rho GTPase inactivation domain in Vibrio cholerae MARTX toxin has a circularly permuted papain-like thiol protease fold.	Pei J, Grishin NV.	Proteins	10.1002/prot.22447	2009
	Life Detection and Microbial Biomarker Profiling with Signs of Life Detector-Life Detector Chip During a Mars Drilling Simulation Campaign in the Hyperarid Core of the Atacama Desert.	Moreno-Paz M, Dos Santos Severino RS, Sanchez-Garcia L, Manchado JM, Garcia-Villadangos M, Aguirre J, Fernandez-Martinez MA, Carrizo D, Kobayashi L, Dave A, Warren-Rhodes K, Davila A, Stoker CR, Glass B, Parro V.	Astrobiology	10.1089/ast.2021.0174	2023
	The Gut Microbiota: A Potential Gateway to Improved Health Outcomes in Breast Cancer Treatment and Survivorship.	Sampsell K, Hao D, Reimer RA.	Int J Mol Sci	10.3390/ijms21239239	2020
Phylogeny	Main functions and taxonomic distribution of virulence genes in Brucella melitensis 16 M.	Brambila-Tapia AJ, Armenta-Medina D, Rivera-Gomez N, Perez-Rueda E.	PLoS One	10.1371/journal.pone.0100349	2014
Metabolism	Structural diversity of the coenzyme methylofuran and identification of enzymes for the biosynthesis of its polyglutamate side chain.	Hemmann JL, Bruhwiler MR, Bortfeld-Miller M, Vorholt JA.	J Biol Chem	10.1016/j.jbc.2021.100682	2021
Metabolism	Identification of an apiosyltransferase in the plant pathogen Xanthomonas pisi.	Smith JA, Bar-Peled M.	PLoS One	10.1371/journal.pone.0206187	2018
	Microbial Therapy and Breast Cancer Management: Exploring Mechanisms, Clinical Efficacy, and Integration within the One Health Approach.	Filippou C, Themistocleous SC, Marangos G, Panayiotou Y, Fyrilla M, Kousparou CA, Pana ZD, Tsioutis C, Johnson EO, Yiallouris A.	Int J Mol Sci	10.3390/ijms25021110	2024
	Subsurface Microbial Habitats in an Extreme Desert Mars-Analog Environment.	Warren-Rhodes KA, Lee KC, Archer SDJ, Cabrol N, Ng-Boyle L, Wettergreen D, Zacny K, Pointing SB, NASA Life in the Atacama Project Team.	Front Microbiol	10.3389/fmicb.2019.00069	2019
Phylogeny	Metagenomic analysis of the complex microbial consortium associated with cultures of the oil-rich alga Botryococcus braunii.	Sambles C, Moore K, Lux TM, Jones K, Littlejohn GR, Gouveia JD, Aves SJ, Studholme DJ, Lee R, Love J.	Microbiologyopen	10.1002/mbo3.482	2017
	The emerging tumor microbe microenvironment: From delineation to multidisciplinary approach-based interventions.	Fu Y, Li J, Cai W, Huang Y, Liu X, Ma Z, Tang Z, Bian X, Zheng J, Jiang J, Li C.	Acta Pharm Sin B	10.1016/j.apsb.2023.11.018	2024
Pathogenicity	Cerium regulates expression of alternative methanol dehydrogenases in Methylosinus trichosporium OB3b.	Farhan Ul Haque M, Kalidass B, Bandow N, Turpin EA, DiSpirito AA, Semrau JD.	Appl Environ Microbiol	10.1128/aem.02542-15	2015
Phylogeny	Taxon-specific aerosolization of bacteria and viruses in an experimental ocean-atmosphere mesocosm.	Michaud JM, Thompson LR, Kaul D, Espinoza JL, Richter RA, Xu ZZ, Lee C, Pham KM, Beall CM, Malfatti F, Azam F, Knight R, Burkart MD, Dupont CL, Prather KA.	Nat Commun	10.1038/s41467-018-04409-z	2018
Genetics	Performance of Multiple Metagenomics Pipelines in Understanding Microbial Diversity of a Low-Biomass Spacecraft Assembly Facility.	Wood JM, Singh NK, Guan L, Seuylemezian A, Benardini JN, Venkateswaran K.	Front Microbiol	10.3389/fmicb.2021.685254	2021
	Transfer of a Catabolic Pathway for Chloromethane in Methylobacterium Strains Highlights Different Limitations for Growth with Chloromethane or with Dichloromethane.	Michener JK, Vuilleumier S, Bringel F, Marx CJ.	Front Microbiol	10.3389/fmicb.2016.01116	2016
	Oligo-DNA custom macroarray for monitoring major pathogenic and non-pathogenic fungi and bacteria in the phyllosphere of apple trees.	He YH, Isono S, Shibuya M, Tsuji M, Adkar Purushothama CR, Tanaka K, Sano T.	PLoS One	10.1371/journal.pone.0034249	2012
	Human Microbiota and Breast Cancer-Is There Any Relevant Link?-A Literature Review and New Horizons Toward Personalised Medicine.	Alpuim Costa D, Nobre JG, Batista MV, Ribeiro C, Calle C, Cortes A, Marhold M, Negreiros I, Borralho P, Brito M, Cortes J, Braga SA, Costa L.	Front Microbiol	10.3389/fmicb.2021.584332	2021
Genetics	Comprehensive Comparative Genomics and Phenotyping of Methylobacterium Species.	Alessa O, Ogura Y, Fujitani Y, Takami H, Hayashi T, Sahin N, Tani A.	Front Microbiol	10.3389/fmicb.2021.740610	2021
Genetics	Rhizobiales as functional and endosymbiontic members in the lichen symbiosis of Lobaria pulmonaria L.	Erlacher A, Cernava T, Cardinale M, Soh J, Sensen CW, Grube M, Berg G.	Front Microbiol	10.3389/fmicb.2015.00053	2015
Metabolism	Lanthanide-Dependent Methylotrophs of the Family Beijerinckiaceae: Physiological and Genomic Insights.	Wegner CE, Gorniak L, Riedel S, Westermann M, Kusel K.	Appl Environ Microbiol	10.1128/aem.01830-19	2019
Metabolism	Metals and Methanotrophy.	Semrau JD, DiSpirito AA, Gu W, Yoon S.	Appl Environ Microbiol	10.1128/aem.02289-17	2018
Metabolism	XoxF Acts as the Predominant Methanol Dehydrogenase in the Type I Methanotroph Methylomicrobium buryatense.	Chu F, Lidstrom ME.	J Bacteriol	10.1128/jb.00959-15	2016
	An atlas of the tissue and blood metagenome in cancer reveals novel links between bacteria, viruses and cancer.	Borchmann S.	Microbiome	10.1186/s40168-021-01039-4	2021
	Phylogenetic study of methanol oxidizers from chilika-lake sediments using genomic and metagenomic approaches.	Meena KK, Kumar M, Mishra S, Mishra S, Ojha SK, Wakchaure GC, Sarkar B.	Indian J Microbiol	10.1007/s12088-015-0510-3	2015
Genetics	Breast tissue, oral and urinary microbiomes in breast cancer.	Wang H, Altemus J, Niazi F, Green H, Calhoun BC, Sturgis C, Grobmyer SR, Eng C.	Oncotarget	10.18632/oncotarget.21490	2017
Phylogeny	Microbiological and Clinical Studies of Legionellosis in 33 Patients with Cancer.	Han XY, Ihegword A, Evans SE, Zhang J, Li L, Cao H, Tarrand JJ, El-Kweifi O.	J Clin Microbiol	10.1128/jcm.00380-15	2015
Genetics	Inherent bacterial DNA contamination of extraction and sequencing reagents may affect interpretation of microbiota in low bacterial biomass samples.	Glassing A, Dowd SE, Galandiuk S, Davis B, Chiodini RJ.	Gut Pathog	10.1186/s13099-016-0103-7	2016
Genetics	Elevated Rate of Genome Rearrangements in Radiation-Resistant Bacteria.	Repar J, Supek F, Klanjscek T, Warnecke T, Zahradka K, Zahradka D.	Genetics	10.1534/genetics.116.196154	2017
Phylogeny	Phylogenetic Co-Occurrence of ExoR, ExoS, and ChvI, Components of the RSI Bacterial Invasion Switch, Suggests a Key Adaptive Mechanism Regulating the Transition between Free-Living and Host-Invading Phases in Rhizobiales.	Heavner ME, Qiu WG, Cheng HP.	PLoS One	10.1371/journal.pone.0135655	2015
Enzymology	Identification of bacteria on the surface of clinically infected and non-infected prosthetic hip joints removed during revision arthroplasties by 16S rRNA gene sequencing and by microbiological culture.	Dempsey KE, Riggio MP, Lennon A, Hannah VE, Ramage G, Allan D, Bagg J.	Arthritis Res Ther	10.1186/ar2201	2007
Metabolism	Osmotically induced synthesis of the dipeptide N-acetylglutaminylglutamine amide is mediated by a new pathway conserved among bacteria.	Sagot B, Gaysinski M, Mehiri M, Guigonis JM, Le Rudulier D, Alloing G.	Proc Natl Acad Sci U S A	10.1073/pnas.1003063107	2010
Enzymology	Composition and diversity of microbial communities recovered from surrogate minerals incubated in an acidic uranium-contaminated aquifer.	Reardon CL, Cummings DE, Petzke LM, Kinsall BL, Watson DB, Peyton BM, Geesey GG.	Appl Environ Microbiol	10.1128/aem.70.10.6037-6046.2004	2004
	Housekeeping genes essential for pantothenate biosynthesis are plasmid-encoded in Rhizobium etli and Rhizobium leguminosarum.	Villasenor T, Brom S, Davalos A, Lozano L, Romero D, Los Santos AG.	BMC Microbiol	10.1186/1471-2180-11-66	2011
Genetics	Effective use of a horizontally-transferred pathway for dichloromethane catabolism requires post-transfer refinement.	Michener JK, Camargo Neves AA, Vuilleumier S, Bringel F, Marx CJ.	Elife	10.7554/elife.04279	2014
Metabolism	Highly Active and Specific Tyrosine Ammonia-Lyases from Diverse Origins Enable Enhanced Production of Aromatic Compounds in Bacteria and Saccharomyces cerevisiae.	Jendresen CB, Stahlhut SG, Li M, Gaspar P, Siedler S, Forster J, Maury J, Borodina I, Nielsen AT.	Appl Environ Microbiol	10.1128/aem.00405-15	2015
Metabolism	A gene horizontally transferred from bacteria protects arthropods from host plant cyanide poisoning.	Wybouw N, Dermauw W, Tirry L, Stevens C, Grbic M, Feyereisen R, Van Leeuwen T.	Elife	10.7554/elife.02365	2014
Enzymology	Cultivation-independent characterization of methylobacterium populations in the plant phyllosphere by automated ribosomal intergenic spacer analysis.	Knief C, Frances L, Cantet F, Vorholt JA.	Appl Environ Microbiol	10.1128/aem.02532-07	2008
	Genomic survey of pathogenicity determinants and VNTR markers in the cassava bacterial pathogen Xanthomonas axonopodis pv. Manihotis strain CIO151.	Arrieta-Ortiz ML, Rodriguez-R LM, Perez-Quintero A, Poulin L, Diaz AC, Arias Rojas N, Trujillo C, Restrepo Benavides M, Bart R, Boch J, Boureau T, Darrasse A, David P, Duge de Bernonville T, Fontanilla P, Gagnevin L, Guerin F, Jacques MA, Lauber E, Lefeuvre P, Medina C, Medina E, Montenegro N, Munoz Bodnar A, Noel LD, Ortiz Quinones JF, Osorio D, Pardo C, Patil PB, Poussier S, Pruvost O, Robene-Soustrade I, Ryan RP, Tabima J, Urrego Morales OG, Verniere C, Carrere S, Verdier V, Szurek B, Restrepo S, Lopez C, Koebnik R, Bernal A.	PLoS One	10.1371/journal.pone.0079704	2013
Phylogeny	Methylotrophic Methylobacterium bacteria nodulate and fix nitrogen in symbiosis with legumes.	Sy A, Giraud E, Jourand P, Garcia N, Willems A, de Lajudie P, Prin Y, Neyra M, Gillis M, Boivin-Masson C, Dreyfus B.	J Bacteriol	10.1128/jb.183.1.214-220.2001	2001
Metabolism	Polyclonal antibodies recognizing the AmoB protein of ammonia oxidizers of the beta-subclass of the class Proteobacteria.	Pinck C, Coeur C, Potier P, Bock E.	Appl Environ Microbiol	10.1128/aem.67.1.118-124.2001	2001
Metabolism	Change in bacterial community structure during in situ biostimulation of subsurface sediment cocontaminated with uranium and nitrate.	North NN, Dollhopf SL, Petrie L, Istok JD, Balkwill DL, Kostka JE.	Appl Environ Microbiol	10.1128/aem.70.8.4911-4920.2004	2004
Genetics	Run-off replication of host-adaptability genes is associated with gene transfer agents in the genome of mouse-infecting Bartonella grahamii.	Berglund EC, Frank AC, Calteau A, Vinnere Pettersson O, Granberg F, Eriksson AS, Naslund K, Holmberg M, Lindroos H, Andersson SG.	PLoS Genet	10.1371/journal.pgen.1000546	2009
Metabolism	Biodegradation of nitro-substituted explosives 2,4,6-trinitrotoluene, hexahydro-1,3,5-trinitro-1,3,5-triazine, and octahydro-1,3,5,7-tetranitro-1,3,5-tetrazocine by a phytosymbiotic Methylobacterium sp. associated with poplar tissues (Populus deltoides x nigra DN34).	Van Aken B, Yoon JM, Schnoor JL.	Appl Environ Microbiol	10.1128/aem.70.1.508-517.2004	2004
Metabolism	Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes.	Vetting MW, Al-Obaidi N, Zhao S, San Francisco B, Kim J, Wichelecki DJ, Bouvier JT, Solbiati JO, Vu H, Zhang X, Rodionov DA, Love JD, Hillerich BS, Seidel RD, Quinn RJ, Osterman AL, Cronan JE, Jacobson MP, Gerlt JA, Almo SC.	Biochemistry	10.1021/bi501388y	2015
Phylogeny	Phenotype-specific bacterial communities in the cold-water coral Lophelia pertusa (Scleractinia) and their implications for the coral's nutrition, health, and distribution.	Neulinger SC, Jarnegren J, Ludvigsen M, Lochte K, Dullo WC.	Appl Environ Microbiol	10.1128/aem.01777-08	2008
Metabolism	Identification of VceA and VceC, two members of the VjbR regulon that are translocated into macrophages by the Brucella type IV secretion system.	de Jong MF, Sun YH, den Hartigh AB, van Dijl JM, Tsolis RM.	Mol Microbiol	10.1111/j.1365-2958.2008.06487.x	2008
	Influence of Intratumor Microbiome on Clinical Outcome and Immune Processes in Prostate Cancer.	Ma J, Gnanasekar A, Lee A, Li WT, Haas M, Wang-Rodriguez J, Chang EY, Rajasekaran M, Ongkeko WM	Cancers (Basel)	10.3390/cancers12092524	2020
Metabolism	The first molecular characterisation of blue- and red-light photoreceptors from Methylobacterium radiotolerans.	Consiglieri E, Xu QZ, Zhao KH, Gartner W, Losi A	Phys Chem Chem Phys	10.1039/d0cp02014a	2020
Metabolism	Bacterial acquisition of hexachlorobenzene-derived carbon in contaminated soil.	Uhlik O, Strejcek M, Vondracek J, Musilova L, Ridl J, Lovecka P, Macek T	Chemosphere	10.1016/j.chemosphere.2014.04.110	2014
Metabolism	Exploration and prediction of interactions between methanotrophs and heterotrophs.	Stock M, Hoefman S, Kerckhof FM, Boon N, De Vos P, De Baets B, Heylen K, Waegeman W	Res Microbiol	10.1016/j.resmic.2013.08.006	2013
Enzymology	1-Aminocyclopropane-1-carboxylate (ACC) deaminases from Methylobacterium radiotolerans and Methylobacterium nodulans with higher specificity for ACC.	Fedorov DN, Ekimova GA, Doronina NV, Trotsenko YA	FEMS Microbiol Lett	10.1111/1574-6968.12133	2013
Enzymology	Molecular structure of La3+-induced methanol dehydrogenase-like protein in Methylobacterium radiotolerans.	Hibi Y, Asai K, Arafuka H, Hamajima M, Iwama T, Kawai K	J Biosci Bioeng	10.1016/j.jbiosc.2010.12.017	2011
Metabolism	AcdR protein is an activator of transcription of 1-aminocyclopropane-1-carboxylate deaminase in Methylobacterium radiotolerans JCM 2831.	Ekimova GA, Fedorov DN, Doronina NV, Khmelenina VN, Mustakhimov II	Antonie Van Leeuwenhoek	10.1007/s10482-022-01764-2	2022
Phylogeny	Brevundimonas lutea sp. nov., isolated from lake sediment.	Qu JH, Fu YH, Li XD, Li HF, Tian HL.	Int J Syst Evol Microbiol	10.1099/ijsem.0.003330	2019
Phylogeny	Bacillus panacisoli sp. nov., isolated from ginseng soil.	Choi JH, Cha CJ.	Int J Syst Evol Microbiol	10.1099/ijs.0.054320-0	2014
Enzymology	Paraherbaspirillum soli gen. nov., sp. nov. isolated from soil.	Anandham R, Kim SJ, Moon JY, Weon HY, Kwon SW.	J Microbiol	10.1007/s12275-013-2563-5	2013
Phylogeny	Sphingobacterium caeni sp. nov., isolated from activated sludge.	Sun LN, Zhang J, Chen Q, He J, Li SP.	Int J Syst Evol Microbiol	10.1099/ijs.0.046987-0	2013
Phylogeny	Sphingobacterium cladoniae sp. nov., isolated from lichen, Cladonia sp., and emended description of Sphingobacterium siyangense.	Lee DH, Hur JS, Kahng HY.	Int J Syst Evol Microbiol	10.1099/ijs.0.038844-0	2013
Phylogeny	Exiguobacterium soli sp. nov., a psychrophilic bacterium from the McMurdo Dry Valleys, Antarctica.	Chaturvedi P, Prabahar V, Manorama R, Pindi PK, Bhadra B, Begum Z, Shivaji S.	Int J Syst Evol Microbiol	10.1099/ijs.0.2008/000067-0	2008
Phylogeny	Flavobacterium terrae sp. nov. and Flavobacterium cucumis sp. nov., isolated from greenhouse soil.	Weon HY, Song MH, Son JA, Kim BY, Kwon SW, Go SJ, Stackebrandt E.	Int J Syst Evol Microbiol	10.1099/ijs.0.64935-0	2007
Phylogeny	Tetragenococcus koreensis sp. nov., a novel rhamnolipid-producing bacterium.	Lee M, Kim MK, Vancanneyt M, Swings J, Kim SH, Kang MS, Lee ST.	Int J Syst Evol Microbiol	10.1099/ijs.0.63448-0	2005
Genetics	Dakarella massiliensis gen. nov., sp. nov., strain ND3^T: a new bacterial genus isolated from the female genital tract.	Dione N, Rathored J, Tomei E, Lagier JC, Khelaifia S, Robert C, Bretelle F, Raoult D, Fournier PE, Fenollar F.	New Microbes New Infect	10.1016/j.nmni.2017.05.003	2017
	Characterization of a facultatively psychrophilic bacterium, vibrio rumoiensis sp. nov., that exhibits high catalase activity	Yumoto I, Iwata H, Sawabe T, Ueno K, Ichise N, Matsuyama H, Okuyama H, Kawasaki K.	Appl Environ Microbiol	10.1128/aem.65.1.67-72.1999	1999
Phylogeny	Methylobacterium amylolyticum sp. nov. and Methylobacterium ligniniphilum sp. nov., isolated from soil.	Zhang S, Luo Y, Zhang K, Song Z, Ling L, Yu X, Sun Y, Li J, Xiang W, Wang X, Zhao J.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006457	2024
Phylogeny	Methylobacterium oryzae sp. nov., an aerobic, pink-pigmented, facultatively methylotrophic, 1-aminocyclopropane-1-carboxylate deaminase-producing bacterium isolated from rice.	Madhaiyan M, Kim BY, Poonguzhali S, Kwon SW, Song MH, Ryu JH, Go SJ, Koo BS, Sa TM.	Int J Syst Evol Microbiol	10.1099/ijs.0.64603-0	2007
Phylogeny	Methylobacterium hispanicum sp. nov. and Methylobacterium aquaticum sp. nov., isolated from drinking water.	Gallego V, Garcia MT, Ventosa A.	Int J Syst Evol Microbiol	10.1099/ijs.0.63319-0	2005
Phylogeny	Methylobacterium trifolii sp. nov. and Methylobacterium thuringiense sp. nov., methanol-utilizing, pink-pigmented bacteria isolated from leaf surfaces.	Wellner S, Lodders N, Glaeser SP, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijs.0.047787-0	2013
Phylogeny	Methylobacterium marchantiae sp. nov., a pink-pigmented, facultatively methylotrophic bacterium isolated from the thallus of a liverwort.	Schauer S, Kampfer P, Wellner S, Sproer C, Kutschera U	Int J Syst Evol Microbiol	10.1099/ijs.0.021915-0	2010
Phylogeny	Methylobacterium dankookense sp. nov., isolated from drinking water.	Lee SW, Oh HW, Lee KH, Ahn TY	J Microbiol	10.1007/s12275-009-0126-6	2010
Phylogeny	Methylobacterium iners sp. nov. and Methylobacterium aerolatum sp. nov., isolated from air samples in Korea.	Weon HY, Kim BY, Joa JH, Son JA, Song MH, Kwon SW, Go SJ, Yoon SH	Int J Syst Evol Microbiol	10.1099/ijs.0.65047-0	2008

References

#666	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1819
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#60784	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55904
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Methylobacterium radiotolerans (DSM 1819, ATCC 27329, CIP 101128)

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