Name: Methylobacterium organophilum XX
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7151

Type strain:

Species: Methylobacterium organophilum

Strain Designation: XX

Culture col. no.: DSM 18172, ATCC 27886, CIP 101049, IFO 15689, JCM 2833, NCIMB 11278, DSM 760, LMG 6083

Strain history: CIP <- 1984, NCIB <- ATCC <- R.S. Hanson: strain XX

NCBI tax ID(s): 410 (species)

Other strains from Methylobacterium organophilum

M. organophilum XX, DSM 760, ATCC 27886, NCIB 11278, ...
M. organophilum 998-85, CIP 102028
M. organophilum 535-86, CIP 102545
M. organophilum CCUG 37468

Section

Methylobacterium organophilum XX is a mesophilic, Gram-negative, rod-shaped bacterium that was isolated from sediment.

Gram-negative
rod-shaped
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Methylobacteriaceae*
	Genus	*Methylobacterium*
	Species	**Methylobacterium organophilum**
	Full Scientific Name (LPSN)	Methylobacterium organophilum Patt et al. 1976 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #121432]	Gram stain	negative

[Ref.: #121432]	Cell shape	rod-shaped

[Ref.: #121432]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7410]

Culture medium

METHYLOBACTERIUM MEDIUM (DSMZ Medium 125)

[Ref.: #7410]

Culture medium growth

[Ref.: #7410]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7410]

Culture medium composition

expand / minimize

[Ref.: #7410]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #7410]

Culture medium growth

[Ref.: #7410]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7410]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7410]			growth	30 °C

[Ref.: #7410]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7410]	Sample type/isolated from	sediment
[Ref.: #7410]	Geographic location (country and/or sea, region)	Wisconsin, Madison, Lake Mendota
[Ref.: #7410]	Country	USA
[Ref.: #7410]	Country ISO 3 Code	USA
[Ref.: #7410]	Continent	North America

[Ref.: #121432]	Sample type/isolated from	Environment, Sediment
[Ref.: #121432]	Geographic location (country and/or sea, region)	Mendota lake, Madison
[Ref.: #121432]	Country	United States of America
[Ref.: #121432]	Country ISO 3 Code	USA
[Ref.: #121432]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7410]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121432]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7410]	Methylobacterium organophilum partial 16S rRNA gene, type strain DSM 18172T	LN681562	1435	ENA	410 tax ID
[Ref.: #20218]	Methylobacterium organophilum 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF338181	1163	ENA	410 tax ID	*
[Ref.: #20218]	Methylobacterium organophilum partial 16S rRNA gene, strain JCM 2833	AJ400920	697	ENA	410 tax ID	*

[Ref.: #7410]

GC-content

66.0 mol%

Availability in culture collections External links

[Ref.: #7410]

Culture collection no.

DSM 18172, ATCC 27886, CIP 101049, IFO 15689, JCM 2833, NCIMB 11278, DSM 760, LMG 6083

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methylobacterium terricola sp. nov., a gamma radiation-resistant bacterium isolated from gamma ray-irradiated soil.	Kim J, Chhetri G, Kim I, Lee B, Jang W, Kim MK, Seo T	Int J Syst Evol Microbiol	10.1099/ijsem.0.004054	2020	*
Phylogeny	Methylobacterium terrae sp. nov., a radiation-resistant bacterium isolated from gamma ray-irradiated soil.	Kim J, Chhetri G, Kim I, Kim H, Kim MK, Seo T	J Microbiol	10.1007/s12275-019-9007-9	2019	*
Phylogeny	Psychroglaciecola arctica gen. nov., sp. nov., isolated from Arctic glacial foreland soil.	Qu Z, Jiang F, Chang X, Qiu X, Ren L, Fang C, Peng F	Int J Syst Evol Microbiol	10.1099/ijs.0.060913-0	2014	*
Phylogeny	Methylobacterium haplocladii sp. nov. and Methylobacterium brachythecii sp. nov., isolated from bryophytes.	Tani A, Sahin N	Int J Syst Evol Microbiol	10.1099/ijs.0.048215-0	2013	*
Phylogeny	Methylobacterium trifolii sp. nov. and Methylobacterium thuringiense sp. nov., methanol-utilizing, pink-pigmented bacteria isolated from leaf surfaces.	Wellner S, Lodders N, Glaeser SP, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijs.0.047787-0	2013	*
Phylogeny	Methylobacterium gnaphalii sp. nov., isolated from leaves of Gnaphalium spicatum.	Tani A, Sahin N, Kimbara K	Int J Syst Evol Microbiol	10.1099/ijs.0.037713-0	2011	*
Phylogeny	Methylobacterium jeotgali sp. nov., a non-pigmented, facultatively methylotrophic bacterium isolated from jeotgal, a traditional Korean fermented seafood.	Aslam Z, Lee CS, Kim KH, Im WT, Ten LN, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.64625-0	2007	*
Phylogeny	Bosea minatitlanensis sp. nov., a strictly aerobic bacterium isolated from an anaerobic digester.	Ouattara AS, Assih EA, Thierry S, Cayol JL, Labat M, Monroy O, Macarie H	Int J Syst Evol Microbiol	10.1099/ijs.0.02540-0	2003	*

References

#7410

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18172

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#121432 Collection of Institut Pasteur ; Curators of the CIP; CIP 101049
* These data were automatically processed and therefore are not curated

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