Name: Methanosarcina sp. MTP4
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7109

Type strain:

Species: Methanosarcina sp.

Strain Designation: MTP4

Culture col. no.: DSM 6636

Strain history: <- F. Bak, MTP4

NCBI tax ID(s): 2213 (species)

SI-ID 48258

DSM 6636

Special Collections

DSMZ

Other strains from Methanosarcina sp.

Section

Methanosarcina sp. MTP4 is an anaerobe, Gram-negative archaeon that was isolated from salt marsh sediment.

Gram-negative
anaerobe
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	"Methanomicrobia"
	Order	*Methanosarcinales*
	Family	*Methanosarcinaceae*
	Genus	*Methanosarcina*
	Full Scientific Name (LPSN)	Methanosarcina Kluyver and van Niel 1936 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #2641]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2641]

Culture medium

METHANOCOCCOIDES MEDIUM (DSMZ Medium 141c)

[Ref.: #2641]

Culture medium growth

[Ref.: #2641]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2641]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2641]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #2641]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2641]	Sample type/isolated from	salt marsh sediment
[Ref.: #2641]	Geographic location (country and/or sea, region)	Bordeaux
[Ref.: #2641]	Country	France
[Ref.: #2641]	Country ISO 3 Code	FRA
[Ref.: #2641]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Salt marsh
#Environmental	#Terrestrial	#Sediment
#Condition	#Saline	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methanosarcina sp. MTP4	GCA_000970045	complete	GenBank ENA	1434100 tax ID	*
[Ref.: #66792]	Methanosarcina sp. MTP4	2651869869	complete	JGI IMG/M	1434100 tax ID	*
[Ref.: #66792]	Methanosarcina sp. MTP4	1434100.4	complete	PATRIC	1434100 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methanosarcina sp. MTP4 MTP4 NCBI: GCA_000970045.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	66.176	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	86.929	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	88.147	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	84.265	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	86.43	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	82.708	no

Availability in culture collections External links

[Ref.: #2641]

Culture collection no.

DSM 6636

[Ref.: #76564]

SI-ID 48258

Literature:

	Title	Authors	Journal	DOI	Year
	Methanogenic conversion of 3-s-methylmercaptopropionate to 3-mercaptopropionate.	van der Maarel M, Jansen M, Hansen TA	Appl Environ Microbiol	10.1128/aem.61.1.48-51.1995	1995	*

References

#2641

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6636

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#76564

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48258.1 )

* These data were automatically processed and therefore are not curated

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Methanosarcina sp. MTP4 MTP4

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