Name: Methanosarcina sp. MTP4
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7109

Type strain:

Species: Methanosarcina sp.

Strain Designation: MTP4

Culture col. no.: DSM 6636

Strain history: <- F. Bak, MTP4

NCBI tax ID(s): 2213 (species)

SI-ID 48258

DSM 6636

Other strains from Methanosarcina sp.

M. sp. 3, DSM 805, ATCC 29786, OCM 84
M. sp. FR-1, DSM 2256, OCM 93
M. sp. Sar, DSM 10131
M. sp. WH1, DSM 4659
M. sp. Kolksee, DSM 8688, OCM 94
M. sp. Naples 100, DSM 8689
M. sp. SO-2P, DSM 11429
M. sp. HG-1P, DSM 11430
M. sp. LVG-4P, DSM 11431
M. sp. R1-1P, DSM 11432
M. sp. KN-6P, DSM 11433
M. sp. V-1P, DSM 11434
M. sp. Ms 97, DSM 11855
M. sp. Pr2, DSM 15128
M. sp. DS-1, DSM 15192
M. sp. Cali, DSM 13159
M. sp. 0179703a, DSM 27722, OCM 788
M. sp. AK-6, DSM 17370, OCM 805

Section

Methanosarcina sp. MTP4 is an anaerobe, mesophilic archaeon that was isolated from salt marsh sediment.

anaerobe
mesophilic
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	"Methanomicrobia"
	Order	*Methanosarcinales*
	Family	*Methanosarcinaceae*
	Genus	*Methanosarcina*
	Full Scientific Name (LPSN)	Methanosarcina Kluyver and van Niel 1936 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #2641]

Incubation period

3-7 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2641]

Culture medium

METHANOCOCCOIDES MEDIUM (DSMZ Medium 141c)

[Ref.: #2641]

Culture medium growth

[Ref.: #2641]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2641]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2641]			growth	28 °C

[Ref.: #2641]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #2641]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2641]	Sample type/isolated from	salt marsh sediment
[Ref.: #2641]	Geographic location (country and/or sea, region)	Bordeaux
[Ref.: #2641]	Country	France
[Ref.: #2641]	Country ISO 3 Code	FRA
[Ref.: #2641]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Salt marsh
#Environmental	#Terrestrial	#Sediment
#Condition	#Saline	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methanosarcina sp. MTP4	GCA_000970045	complete	GenBank	1434100 tax ID	*
[Ref.: #66792]	Methanosarcina sp. MTP4	2651869869	complete	JGI IMG/M	1434100 tax ID	*
[Ref.: #66792]	Methanosarcina sp. MTP4	1434100.4	complete	PATRIC	1434100 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methanosarcina sp. MTP4 MTP4 NCBI: GCA_000970045.1
[Ref.: #69480]	motile	no	91.355	no
[Ref.: #69480]	flagellated	no	97.509	no
[Ref.: #69480]	gram-positive	no	95.73	no
[Ref.: #69480]	anaerobic	yes	98.186	yes
[Ref.: #69480]	aerobic	no	95.025	no
[Ref.: #69480]	halophile	no	80.356	no
[Ref.: #69480]	spore-forming	no	95.094	no
[Ref.: #69480]	thermophile	no	96.757	yes
[Ref.: #69480]	glucose-util	yes	70.671	no
[Ref.: #69480]	glucose-ferment	no	71.99	no

Availability in culture collections External links

[Ref.: #2641]

Culture collection no.

DSM 6636

[Ref.: #76564]

SI-ID 48258

Literature:

	Title	Authors	Journal	DOI	Year
	Methanogenic conversion of 3-s-methylmercaptopropionate to 3-mercaptopropionate.	van der Maarel M, Jansen M, Hansen TA	Appl Environ Microbiol	10.1128/aem.61.1.48-51.1995	1995	*

References

#2641

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6636

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#76564

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48258.1 )

* These data were automatically processed and therefore are not curated

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Methanosarcina sp. MTP4 MTP4

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