Name: Methanosarcina sp. WH1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 7108

Type strain:

Species: Methanosarcina sp.

Strain Designation: WH1

Culture col. no.: DSM 4659

Strain history: <- P.E. Rouviere and R.S. Wolfe, WH1

NCBI tax ID(s): 2213 (species)

SI-ID 47862

DSM 4659

Special Collections

DSMZ

Other strains from Methanosarcina sp.

Section

Methanosarcina sp. WH1 is an anaerobe, Gram-negative archaeon that was isolated from anaerobic sands.

Gram-negative
anaerobe
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	"Methanomicrobia"
	Order	*Methanosarcinales*
	Family	*Methanosarcinaceae*
	Genus	*Methanosarcina*
	Full Scientific Name (LPSN)	Methanosarcina Kluyver and van Niel 1936 (Approved Lists 1980)

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1670]

Culture medium

METHANOCOCCOIDES MEDIUM (DSMZ Medium 141c)

[Ref.: #1670]

Culture medium growth

[Ref.: #1670]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1670]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1670]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1670]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1670]	Sample type/isolated from	anaerobic sands
[Ref.: #1670]	Geographic location (country and/or sea, region)	Madison, Sippewisset Marsh
[Ref.: #1670]	Country	USA
[Ref.: #1670]	Country ISO 3 Code	USA
[Ref.: #1670]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Sandy
#Condition	#Anoxic (anaerobic)	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Methanosarcina sp. 16S ribosomal RNA gene, partial sequence	M59136	1425	GenBank ENA	2213 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methanosarcina sp. WH1	GCA_000970005	complete	GenBank ENA	1434102 tax ID	*
[Ref.: #66792]	Methanosarcina sp. WH1	2627853658	complete	JGI IMG/M	1434102 tax ID	*
[Ref.: #66792]	Methanosarcina sp. WH1	1434102.4	complete	PATRIC	1434102 tax ID	*

[Ref.: #1670]

GC-content

43.0 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methanosarcina sp. WH1 WH1 NCBI: GCA_000970005.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	62.976	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	88.854	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	91.035	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	85.985	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	88.817	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	83.083	no

Availability in culture collections External links

[Ref.: #1670]

Culture collection no.

DSM 4659

[Ref.: #76563]

SI-ID 47862

References

#1670

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4659

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#76563

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID47862.1 )

* These data were automatically processed and therefore are not curated

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Methanosarcina sp. WH1 WH1

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