Methanosarcina barkeri (DSM 800, ATCC 43569, JCM 10043)

Name: Methanosarcina barkeri (DSM 800, ATCC 43569, JCM 10043)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7087

Type strain

Strain Designation MS

Culture col. no. DSM 800 ATCC 43569 JCM 10043 OCM 38 MS 2 more

NCBI tax ID(s) 1298606 2208

Special Collections DSMZ JCM

Links

Methanosarcina barkeri MS is an anaerobe, mesophilic prokaryote that was isolated from anaerobic sewage digester.

anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 354032

DSM 800,JCM 10043,ATCC 43569,VKM B-1635,NBRC 100474,BCRC 16175,CCRC 16175

@ref 20215

Last LPSN update 2025-12-16 09:48:29

Domain Methanobacteriati

Phylum Methanobacteriota

Class Methanosarcinia

Order Methanosarcinales

Family Methanosarcinaceae

Genus Methanosarcina

Species Methanosarcina barkeri

Full scientific name Methanosarcina barkeri Schnellen 1947 (Approved Lists 1980)

BacDive ID	Other strains from **Methanosarcina barkeri** (4)	Type strain
7090	M. barkeri DSM 1311, OCM 27
7091	M. barkeri 227, DSM 1538, ATCC 43241, OCM 35
7093	M. barkeri DSM 2948, OCM 86
7094	M. barkeri Wiesmoor, DSM 8687, OCM 89

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	95.3

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
456	METHANOSARCINA MEDIUM (DSMZ Medium 120)		Medium recipe at MediaDive	Name: METHANOSARCINA MEDIUM (DSMZ Medium 120) Composition: Methanol 15.4688 g/l Na-acetate 2.44141 g/l NaCl 2.19727 g/l NaHCO3 1.95312 g/l Casitone 1.95312 g/l Yeast extract 1.95312 g/l NH4Cl 0.488281 g/l MgSO4 x 7 H2O 0.488281 g/l K2HPO4 0.341797 g/l Na2S x 9 H2O 0.292969 g/l L-Cysteine HCl x H2O 0.292969 g/l CaCl2 x 2 H2O 0.244141 g/l KH2PO4 0.224609 g/l HCl 0.00244141 g/l FeSO4 x 7 H2O 0.00195312 g/l FeCl2 x 4 H2O 0.00146484 g/l Sodium resazurin 0.000488281 g/l CoCl2 x 6 H2O 0.000185547 g/l Pyridoxine hydrochloride 9.76563e-05 g/l MnCl2 x 4 H2O 9.76563e-05 g/l ZnCl2 6.83594e-05 g/l Riboflavin 4.88281e-05 g/l Calcium D-(+)-pantothenate 4.88281e-05 g/l Nicotinic acid 4.88281e-05 g/l (DL)-alpha-Lipoic acid 4.88281e-05 g/l Thiamine HCl 4.88281e-05 g/l p-Aminobenzoic acid 4.88281e-05 g/l Na2MoO4 x 2 H2O 3.51562e-05 g/l NiCl2 x 6 H2O 2.34375e-05 g/l Folic acid 1.95312e-05 g/l Biotin 1.95312e-05 g/l H3BO3 5.85938e-06 g/l CuCl2 x 2 H2O 1.95313e-06 g/l Vitamin B12 9.76563e-07 g/l H2SO4 Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
456	positive	growth	35	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

456

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation	Confidence
125439		94

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Biodegradation	#Anaerobic digestor
#Engineered	#Waste	#Wastewater
#Condition	#Anoxic (anaerobic)	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
456	anaerobic sewage digester	Illinois, Urbana	USA	USA	North America
67770	Anaerobic sewage-sludge digester	Urbana, IL	USA	USA	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
456	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM97002v1 assembly for Methanosarcina barkeri MS	complete	GCA_000970025	1434108.4	2630968729	1434108	97
66792	ASM131630v1 assembly for Methanosarcina barkeri JCM 10043	contig	GCA_001316305	1298606.3	2684622504	1298606

Genome browser: GCA_000970025

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Methanosarcina barkeri culture DSM:800 16S ribosomal RNA gene, partial sequence	JQ346756	1268	2208
456	Methanosarcina barkeri 16S rRNA gene, strain DSM 800 (T)	AJ012094	1411	2208
124043	Methanosarcina barkeri gene for 16S ribosomal RNA, partial sequence, strain: DSM 800.	AB973360	1409	2208

GC content

@ref	GC-content (mol%)
456	38.8
67770	38.8
67770	39

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Methanosarcina barkeri MS
NCBI: GCA_000970025

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.00	no
125439	motility	BacteriaNetⓘ	no	78.90	no
125439	gram_stain	BacteriaNetⓘ	negative	95.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	74.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Methanosarcina barkeri MS MS
NCBI: GCA_000970025.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	67.12	no
125438	anaerobic	anaerobicⓘ	yes	81.83	no
125438	aerobic	aerobicⓘ	no	90.34	yes
125438	spore-forming	spore-formingⓘ	no	81.25	no
125438	thermophilic	thermophileⓘ	no	87.02	no
125438	flagellated	motile2+ⓘ	no	83.88	no

Literature

Title	Authors	Journal	DOI	Year
Thermodynamic restrictions determine ammonia tolerance of methanogenic pathways in Methanosarcina barkeri.	Yi Y, Dolfing J, Jin G, Fang X, Han W, Liu L, Tang Y, Cheng L.	Water Res	10.1016/j.watres.2023.119664	2023
The novel regulator HdrR controls the transcription of the heterodisulfide reductase operon hdrBCA in Methanosarcina barkeri.	Zhang S, Chen Y, Wang S, Yang Q, Leng H, Zhao P, Guo L, Dai L, Bai L, Cha G.	Appl Environ Microbiol	10.1128/aem.00691-24	2024
Electrical current disrupts the electron transfer in defined consortia.	Yee MO, Ottosen LDM, Rotaru AE.	Microb Biotechnol	10.1111/1751-7915.14373	2024
The reduction of environmentally abundant iron oxides by the methanogen Methanosarcina barkeri.	Eliani-Russak E, Tik Z, Uzi-Gavrilov S, Meijler MM, Sivan O.	Front Microbiol	10.3389/fmicb.2023.1197299	2023
A unified and simple medium for growing model methanogens.	Dzofou Ngoumelah D, Harnisch F, Sulheim S, Heggeset TMB, Aune IH, Wentzel A, Kretzschmar J.	Front Microbiol	10.3389/fmicb.2022.1046260	2022
Methanogenesis in the presence of oxygenic photosynthetic bacteria may contribute to global methane cycle.	Ye J, Zhuang M, Hong M, Zhang D, Ren G, Hu A, Yang C, He Z, Zhou S.	Nat Commun	10.1038/s41467-024-50108-3	2024
Rumen microbial degradation of bromoform from red seaweed (Asparagopsis taxiformis) and the impact on rumen fermentation and methanogenic archaea.	Romero P, Belanche A, Jimenez E, Hueso R, Ramos-Morales E, Salwen JK, Kebreab E, Yanez-Ruiz DR.	J Anim Sci Biotechnol	10.1186/s40104-023-00935-z	2023
Different outer membrane c-type cytochromes are involved in direct interspecies electron transfer to Geobacter or Methanosarcina species.	Holmes DE, Zhou J, Smith JA, Wang C, Liu X, Lovley DR.	mLife	10.1002/mlf2.12037	2022
Effect of model methanogens on the electrochemical activity, stability, and microbial community structure of Geobacter spp. dominated biofilm anodes.	Dzofou Ngoumelah D, Heggeset TMB, Haugen T, Sulheim S, Wentzel A, Harnisch F, Kretzschmar J.	NPJ Biofilms Microbiomes	10.1038/s41522-024-00490-z	2024
Respiration-driven methanotrophic growth of diverse marine methanogens.	Yan Z, Du K, Yan Y, Huang R, Zhu F, Yuan X, Wang S, Ferry JG.	Proc Natl Acad Sci U S A	10.1073/pnas.2303179120	2023
Solar-driven methanogenesis with ultrahigh selectivity by turning down H₂ production at biotic-abiotic interface.	Ye J, Wang C, Gao C, Fu T, Yang C, Ren G, Lu J, Zhou S, Xiong Y.	Nat Commun	10.1038/s41467-022-34423-1	2022
Sustained Biotic-Abiotic Hybrids Methanogenesis Enabled Using Metal-Free Black Phosphorus/Carbon Nitride.	Hu A, Fu T, Ren G, Zhuang M, Yuan W, Zhong S, Zhou S.	Front Microbiol	10.3389/fmicb.2022.957066	2022
Detrimental impact of the Geobacter metallireducens type VI secretion system on direct interspecies electron transfer.	Smith JA, Holmes DE, Woodard TL, Li Y, Liu X, Wang LY, Meier D, Schwarz IA, Lovley DR.	Microbiol Spectr	10.1128/spectrum.00941-23	2023
Ethane-oxidising archaea couple CO₂ generation to F₄₂₀ reduction.	Lemaire ON, Wegener G, Wagner T.	Nat Commun	10.1038/s41467-024-53338-7	2024
Effect of nickel, cobalt, and iron on methanogenesis from methanol and cometabolic conversion of 1,2-dichloroethene by Methanosarcina barkeri.	Paulo LM, Hidayat MR, Moretti G, Stams AJM, Sousa DZ.	Biotechnol Appl Biochem	10.1002/bab.1925	2020
Light-driven carbon dioxide reduction to methane by Methanosarcina barkeri in an electric syntrophic coculture.	Huang L, Liu X, Zhang Z, Ye J, Rensing C, Zhou S, Nealson KH.	ISME J	10.1038/s41396-021-01078-7	2022
The hydrogen threshold of obligately methyl-reducing methanogens.	Feldewert C, Lang K, Brune A.	FEMS Microbiol Lett	10.1093/femsle/fnaa137	2020
Data on the optimization of an archaea-specific probe-based qPCR assay.	Bomberg M, Miettinen H.	Data Brief	10.1016/j.dib.2020.106610	2020
Extracellular electron uptake in Methanosarcinales is independent of multiheme c-type cytochromes.	Yee MO, Rotaru AE.	Sci Rep	10.1038/s41598-019-57206-z	2020
Responses of Methanosarcina barkeri to acetate stress.	He P, Duan H, Han W, Liu Y, Shao L, Lu F.	Biotechnol Biofuels	10.1186/s13068-019-1630-5	2019
Efficient Photoelectron Capture by Ni Decoration in Methanosarcina barkeri-CdS Biohybrids for Enhanced Photocatalytic CO₂-to-CH₄ Conversion.	Ye J, Ren G, Kang L, Zhang Y, Liu X, Zhou S, He Z.	iScience	10.1016/j.isci.2020.101287	2020
The complete genome sequence of the rumen methanogen Methanosarcina barkeri CM1.	Lambie SC, Kelly WJ, Leahy SC, Li D, Reilly K, McAllister TA, Valle ER, Attwood GT, Altermann E.	Stand Genomic Sci	10.1186/s40793-015-0038-5	2015
Electron and Proton Flux for Carbon Dioxide Reduction in Methanosarcina barkeri During Direct Interspecies Electron Transfer.	Holmes DE, Rotaru AE, Ueki T, Shrestha PM, Ferry JG, Lovley DR.	Front Microbiol	10.3389/fmicb.2018.03109	2018
Electron bifurcation and fluoride efflux systems implicated in defluorination of perfluorinated unsaturated carboxylic acids by Acetobacterium spp.	Yu Y, Xu F, Zhao W, Thoma C, Che S, Richman JE, Jin B, Zhu Y, Xing Y, Wackett L, Men Y.	Sci Adv	10.1126/sciadv.ado2957	2024
Co-cultivation of the strictly anaerobic methanogen Methanosarcina barkeri with aerobic methanotrophs in an oxygen-limited membrane bioreactor.	In 't Zandt MH, van den Bosch TJM, Rijkers R, van Kessel MAHJ, Jetten MSM, Welte CU.	Appl Microbiol Biotechnol	10.1007/s00253-018-9038-x	2018
Potential for Methanosarcina to Contribute to Uranium Reduction during Acetate-Promoted Groundwater Bioremediation.	Holmes DE, Orelana R, Giloteaux L, Wang LY, Shrestha P, Williams K, Lovley DR, Rotaru AE.	Microb Ecol	10.1007/s00248-018-1165-5	2018
Physiological Effects of 2-Bromoethanesulfonate on Hydrogenotrophic Pure and Mixed Cultures.	Logrono W, Nikolausz M, Harms H, Kleinsteuber S.	Microorganisms	10.3390/microorganisms10020355	2022
Stable carbon isotope fractionation by methylotrophic methanogenic archaea.	Penger J, Conrad R, Blaser M.	Appl Environ Microbiol	10.1128/aem.01773-12	2012
Effect of Nickel Levels on Hydrogen Partial Pressure and Methane Production in Methanogens.	Neubeck A, Sjoberg S, Price A, Callac N, Schnurer A.	PLoS One	10.1371/journal.pone.0168357	2016
Secondary Mineralization of Ferrihydrite Affects Microbial Methanogenesis in Geobacter-Methanosarcina Cocultures.	Tang J, Zhuang L, Ma J, Tang Z, Yu Z, Zhou S.	Appl Environ Microbiol	10.1128/aem.01517-16	2016
Link between capacity for current production and syntrophic growth in Geobacter species.	Rotaru AE, Woodard TL, Nevin KP, Lovley DR.	Front Microbiol	10.3389/fmicb.2015.00744	2015
Direct interspecies electron transfer between Geobacter metallireducens and Methanosarcina barkeri.	Rotaru AE, Shrestha PM, Liu F, Markovaite B, Chen S, Nevin KP, Lovley DR.	Appl Environ Microbiol	10.1128/aem.00895-14	2014
The origin and evolution of methanogenesis and Archaea are intertwined.	Mei R, Kaneko M, Imachi H, Nobu MK.	PNAS Nexus	10.1093/pnasnexus/pgad023	2023
Necessity of electrically conductive pili for methanogenesis with magnetite stimulation.	Wang O, Zheng S, Wang B, Wang W, Liu F.	PeerJ	10.7717/peerj.4541	2018
Single-cell analysis reveals gene-expression heterogeneity in syntrophic dual-culture of Desulfovibrio vulgaris with Methanosarcina barkeri.	Qi Z, Pei G, Chen L, Zhang W.	Sci Rep	10.1038/srep07478	2014
Promoting interspecies electron transfer with biochar.	Chen S, Rotaru AE, Shrestha PM, Malvankar NS, Liu F, Fan W, Nevin KP, Lovley DR.	Sci Rep	10.1038/srep05019	2014
Methanosarcina Spherical Virus, a Novel Archaeal Lytic Virus Targeting Methanosarcina Strains.	Weidenbach K, Nickel L, Neve H, Alkhnbashi OS, Kunzel S, Kupczok A, Bauersachs T, Cassidy L, Tholey A, Backofen R, Schmitz RA.	J Virol	10.1128/jvi.00955-17	2017
Effect of substrate concentration on carbon isotope fractionation during acetoclastic methanogenesis by Methanosarcina barkeri and M. acetivorans and in rice field soil.	Goevert D, Conrad R.	Appl Environ Microbiol	10.1128/aem.02680-08	2009
Unique characteristics of the pyrrolysine system in the 7th order of methanogens: implications for the evolution of a genetic code expansion cassette.	Borrel G, Gaci N, Peyret P, O'Toole PW, Gribaldo S, Brugere JF.	Archaea	10.1155/2014/374146	2014
Biodiversity of thermophilic prokaryotes with hydrolytic activities in hot springs of Uzon Caldera, Kamchatka (Russia).	Kublanov IV, Perevalova AA, Slobodkina GB, Lebedinsky AV, Bidzhieva SK, Kolganova TV, Kaliberda EN, Rumsh LD, Haertle T, Bonch-Osmolovskaya EA.	Appl Environ Microbiol	10.1128/aem.00607-08	2009
Formation of factor 390 by cell extracts of Methanosarcina barkeri.	van de Wijngaard WM, vermey P, van der Drift C.	J Bacteriol	10.1128/jb.173.8.2710-2711.1991	1991
Protein phosphorylation and its role in archaeal signal transduction.	Esser D, Hoffmann L, Pham TK, Brasen C, Qiu W, Wright PC, Albers SV, Siebers B.	FEMS Microbiol Rev	10.1093/femsre/fuw020	2016
An antimethanogenic nutritional intervention in early life of ruminants modifies ruminal colonization by Archaea.	Abecia L, Waddams KE, Martinez-Fernandez G, Martin-Garcia AI, Ramos-Morales E, Newbold CJ, Yanez-Ruiz DR.	Archaea	10.1155/2014/841463	2014
Hydroxydiether Lipid Structures in Methanosarcina spp. and Methanococcus voltae.	Sprott GD, Dicaire CJ, Choquet CG, Patel GB, Ekiel I.	Appl Environ Microbiol	10.1128/aem.59.3.912-914.1993	1993
A genetic system for Archaea of the genus Methanosarcina: liposome-mediated transformation and construction of shuttle vectors.	Metcalf WW, Zhang JK, Apolinario E, Sowers KR, Wolfe RS.	Proc Natl Acad Sci U S A	10.1073/pnas.94.6.2626	1997
RamA, a protein required for reductive activation of corrinoid-dependent methylamine methyltransferase reactions in methanogenic archaea.	Ferguson T, Soares JA, Lienard T, Gottschalk G, Krzycki JA.	J Biol Chem	10.1074/jbc.m807392200	2009
Mass-spectrometric studies of the interrelations among hydrogenase, carbon monoxide dehydrogenase, and methane-forming activities in pure and mixed cultures of Desulfovibrio vulgaris, Desulfovibrio desulfuricans, and Methanosarcina barkeri.	Rajagopal BS, Lespinat PA, Fauque G, LeGall J, Berlier YM.	Appl Environ Microbiol	10.1128/aem.55.9.2123-2129.1989	1989
Involvement of an activation protein in the methanol:2-mercaptoethanesulfonic acid methyltransferase reaction in Methanosarcina barkeri.	Daas PJ, Gerrits KA, Keltjens JT, van der Drift C, Vogels GD.	J Bacteriol	10.1128/jb.175.5.1278-1283.1993	1993
Isolation of subunits from Methanosarcina barkeri ATPase: nucleotide-binding site in the alpha subunit.	Inatomi K, Maeda M.	J Bacteriol	10.1128/jb.170.12.5960-5962.1988	1988
The purine-utilizing bacterium Clostridium acidurici 9a: a genome-guided metabolic reconsideration.	Hartwich K, Poehlein A, Daniel R.	PLoS One	10.1371/journal.pone.0051662	2012
Isolation of two novel corrinoid proteins from acetate-grown Methanosarcina barkeri.	Kremer JD, Cao X, Krzycki J.	J Bacteriol	10.1128/jb.175.15.4824-4833.1993	1993
Energetics of Growth of a Defined Mixed Culture of Desulfovibrio vulgaris and Methanosarcina barkeri: Interspecies Hydrogen Transfer in Batch and Continuous Cultures.	Traore AS, Fardeau ML, Hatchikian CE, Le Gall J, Belaich JP.	Appl Environ Microbiol	10.1128/aem.46.5.1152-1156.1983	1983
Carbon isotope fractionation of 11 acetogenic strains grown on H2 and CO2.	Blaser MB, Dreisbach LK, Conrad R.	Appl Environ Microbiol	10.1128/aem.03203-12	2013
Reconstitution of trimethylamine-dependent coenzyme M methylation with the trimethylamine corrinoid protein and the isozymes of methyltransferase II from Methanosarcina barkeri.	Ferguson DJ, Krzycki JA.	J Bacteriol	10.1128/jb.179.3.846-852.1997	1997
Immunological comparison of ribosomal proteins from archaebacteria.	Schmid G, Bock A.	J Bacteriol	10.1128/jb.147.2.282-288.1981	1981
Acetate-dependent methylation of two corrinoid proteins in extracts of Methanosarcina barkeri.	Cao XJ, Krzycki JA.	J Bacteriol	10.1128/jb.173.17.5439-5448.1991	1991
Bioconversion of Gelatin to Methane by a Coculture of Clostridium collagenovorans and Methanosarcina barkeri.	Jain MK, Zeikus JG.	Appl Environ Microbiol	10.1128/aem.55.2.366-371.1989	1989
Characterization of the iron-sulfur clusters in ferredoxin from acetate-grown Methanosarcina thermophila.	Clements AP, Kilpatrick L, Lu WP, Ragsdale SW, Ferry JG.	J Bacteriol	10.1128/jb.176.9.2689-2693.1994	1994
MreA functions in the global regulation of methanogenic pathways in Methanosarcina acetivorans.	Reichlen MJ, Vepachedu VR, Murakami KS, Ferry JG.	mBio	10.1128/mbio.00189-12	2012
Clustered genes encoding the methyltransferases of methanogenesis from monomethylamine.	Burke SA, Lo SL, Krzycki JA.	J Bacteriol	10.1128/jb.180.13.3432-3440.1998	1998
Energetics of growth of a defined mixed culture of Desulfovibrio vulgaris and Methanosarcina barkeri: maintenance energy coefficient of the sulfate-reducing organism in the absence and presence of its partner.	Traore AS, Gaudin C, Hatchikian CE, Le Gall J, Belaich JP.	J Bacteriol	10.1128/jb.155.3.1260-1264.1983	1983
Inhibition of methanogenesis by methyl fluoride: studies of pure and defined mixed cultures of anaerobic bacteria and archaea.	Janssen PH, Frenzel P.	Appl Environ Microbiol	10.1128/aem.63.11.4552-4557.1997	1997
Effect of sulfate on low-temperature anaerobic digestion.	Madden P, Al-Raei AM, Enright AM, Chinalia FA, de Beer D, O'Flaherty V, Collins G.	Front Microbiol	10.3389/fmicb.2014.00376	2014
Changes in concentrations of coenzyme F420 analogs during batch growth of Methanosarcina barkeri and Methanosarcina mazei.	Peck MW.	Appl Environ Microbiol	10.1128/aem.55.4.940-945.1989	1989
Genome complexity of methanogenic bacteria.	Klein A, Schnorr M.	J Bacteriol	10.1128/jb.158.2.628-631.1984	1984
Distinct microbial populations are tightly linked to the profile of dissolved iron in the methanic sediments of the Helgoland mud area, North Sea.	Oni O, Miyatake T, Kasten S, Richter-Heitmann T, Fischer D, Wagenknecht L, Kulkarni A, Blumers M, Shylin SI, Ksenofontov V, Costa BF, Klingelhofer G, Friedrich MW.	Front Microbiol	10.3389/fmicb.2015.00365	2015
Searching for links in the biotic characteristics and abiotic parameters of nine different biogas plants.	Walter A, Knapp BA, Farbmacher T, Ebner C, Insam H, Franke-Whittle IH.	Microb Biotechnol	10.1111/j.1751-7915.2012.00361.x	2012
Detection and quantitation of methanogens by enzyme-linked immunosorbent assay.	Archer DB.	Appl Environ Microbiol	10.1128/aem.48.4.797-801.1984	1984
Spontaneous Disaggregation of Methanosarcina mazei S-6 and Its Use in the Development of Genetic Techniques for Methanosarcina spp.	Harris JE.	Appl Environ Microbiol	10.1128/aem.53.10.2500-2504.1987	1987
Purification and properties of 5,10-methenyltetrahydromethanopterin cyclohydrolase from Methanosarcina barkeri.	te Brommelstroet BW, Hensgens CM, Geerts WJ, Keltjens JT, van der Drift C, Vogels GD.	J Bacteriol	10.1128/jb.172.2.564-571.1990	1990
Plasmid DNA from the acetotrophic methanogen Methanosarcina acetivorans.	Sowers KR, Gunsalus RP.	J Bacteriol	10.1128/jb.170.10.4979-4982.1988	1988
Folic acid and pteroylpolyglutamate contents of archaebacteria.	Worrell VE, Nagle DP.	J Bacteriol	10.1128/jb.170.9.4420-4423.1988	1988
Structural aspects and immunolocalization of the F420-reducing and non-F420-reducing hydrogenases from Methanobacterium thermoautotrophicum Marburg.	Braks IJ, Hoppert M, Roge S, Mayer F.	J Bacteriol	10.1128/jb.176.24.7677-7687.1994	1994
Conversion of Cellulose to Methane and Carbon Dioxide by Triculture of Acetivibrio cellulolyticus, Desulfovibrio sp., and Methanosarcina barkeri.	Laube VM, Martin SM.	Appl Environ Microbiol	10.1128/aem.42.3.413-420.1981	1981
Methanotrophic and Methanogenic Communities in Swiss Alpine Fens Dominated by Carex rostrata and Eriophorum angustifolium.	Cheema S, Zeyer J, Henneberger R.	Appl Environ Microbiol	10.1128/aem.01519-15	2015
Utilization of trimethylamine and other N-methyl compounds for growth and methane formation by Methanosarcina barkeri.	Hippe H, Caspari D, Fiebig K, Gottschalk G.	Proc Natl Acad Sci U S A	10.1073/pnas.76.1.494	1979
Functional analysis of the three TATA binding protein homologs in Methanosarcina acetivorans.	Reichlen MJ, Murakami KS, Ferry JG.	J Bacteriol	10.1128/jb.01165-09	2010
Anaerobic Degradation of Lactate by Syntrophic Associations of Methanosarcina barkeri and Desulfovibrio Species and Effect of H(2) on Acetate Degradation.	McInerney MJ, Bryant MP.	Appl Environ Microbiol	10.1128/aem.41.2.346-354.1981	1981
Effect of biowaste sludge maturation on the diversity of thermophilic bacteria and archaea in an anaerobic reactor.	Goberna M, Insam H, Franke-Whittle IH.	Appl Environ Microbiol	10.1128/aem.02260-08	2009
Involvement of the "A" isozyme of methyltransferase II and the 29-kilodalton corrinoid protein in methanogenesis from monomethylamine.	Burke SA, Krzycki JA.	J Bacteriol	10.1128/jb.177.15.4410-4416.1995	1995
Methanogens and the diversity of archaebacteria.	Jones WJ, Nagle DP, Whitman WB.	Microbiol Rev	10.1128/mr.51.1.135-177.1987	1987
Disaggregation of Methanosarcina spp. and Growth as Single Cells at Elevated Osmolarity.	Sowers KR, Boone JE, Gunsalus RP.	Appl Environ Microbiol	10.1128/aem.59.11.3832-3839.1993	1993
Hydrophobicities and electrophoretic mobilities of anaerobic bacterial isolates from methanogenic granular sludge.	Grotenhuis JT, Plugge CM, Stams AJ, Zehnder AJ.	Appl Environ Microbiol	10.1128/aem.58.3.1054-1056.1992	1992
Cloning, nucleotide sequence, and transcriptional analyses of the gene encoding a ferredoxin from Methanosarcina thermophila.	Clements AP, Ferry JG.	J Bacteriol	10.1128/jb.174.16.5244-5250.1992	1992
Nickel utilization by microorganisms.	Hausinger RP.	Microbiol Rev	10.1128/mr.51.1.22-42.1987	1987
Enzyme-Linked Immunosorbent Assays for the Specific and Sensitive Quantification of Methanosarcina mazei and Methanobacterium bryantii.	Kemp HA, Archer DB, Morgan MR.	Appl Environ Microbiol	10.1128/aem.54.4.1003-1008.1988	1988
Methanogens: reevaluation of a unique biological group.	Balch WE, Fox GE, Magrum LJ, Woese CR, Wolfe RS.	Microbiol Rev	10.1128/mr.43.2.260-296.1979	1979
Bacteriological composition and structure of granular sludge adapted to different substrates.	Grotenhuis JT, Smit M, Plugge CM, Xu YS, van Lammeren AA, Stams AJ, Zehnder AJ.	Appl Environ Microbiol	10.1128/aem.57.7.1942-1949.1991	1991
Compilation of 5S rRNA and 5S rRNA gene sequences.	Specht T, Wolters J, Erdmann VA.	Nucleic Acids Res	10.1093/nar/18.suppl.2215	1990
Purification and properties of the membrane-associated coenzyme F420-reducing hydrogenase from Methanobacterium formicicum.	Baron SF, Ferry JG.	J Bacteriol	10.1128/jb.171.7.3846-3853.1989	1989
Solubilization and properties of a particulate hydrogenase from Methanobacterium strain G2R.	McKellar RC, Sprott GD.	J Bacteriol	10.1128/jb.139.1.231-238.1979	1979
Genetic organization of the mau gene cluster in Methylobacterium extorquens AM1: complete nucleotide sequence and generation and characteristics of mau mutants.	Chistoserdov AY, Chistoserdova LV, McIntire WS, Lidstrom ME.	J Bacteriol	10.1128/jb.176.13.4052-4065.1994	1994
A shift between mineral and nonmineral sources of iron and sulfur causes proteome-wide changes in Methanosarcina barkeri.	Fausset H, Spietz RL, Cox S, Cooper G, Spurzem S, Tokmina-Lukaszewska M, DuBois J, Broderick JB, Shepard EM, Boyd ES, Bothner B.	Microbiol Spectr	10.1128/spectrum.00418-23	2024
Investigating Abiotic and Biotic Mechanisms of Pyrite Reduction.	Spietz RL, Payne D, Kulkarni G, Metcalf WW, Roden EE, Boyd ES.	Front Microbiol	10.3389/fmicb.2022.878387	2022
Resonance Raman analysis of intracellular vitamin B₁₂ analogs in methanogenic archaea.	Kanno N, Kato S, Itoh T, Ohkuma M, Shigeto S.	Anal Sci Adv	10.1002/ansa.202100042	2022
Correlation of Key Physiological Properties of Methanosarcina Isolates with Environment of Origin.	Zhou J, Holmes DE, Tang HY, Lovley DR.	Appl Environ Microbiol	10.1128/aem.00731-21	2021
Promotion of Nitrogen Fixation of Diverse Heterotrophs by Solid-Phase Humin.	Dey S, Kasai T, Katayama A.	Front Microbiol	10.3389/fmicb.2022.853411	2022
A Genus Definition for Bacteria and Archaea Based on a Standard Genome Relatedness Index.	Barco RA, Garrity GM, Scott JJ, Amend JP, Nealson KH, Emerson D.	mBio	10.1128/mbio.02475-19	2020
Humin accelerates interspecies electron transfer between Shewanella oneidensis MR-1 and Methanosarcina barkeri.	Zhou N, Chen D, Xiao Z.	Sci Total Environ	10.1016/j.scitotenv.2024.177643	2024
Enrichment of Methanothrix species via riboflavin-loaded granular activated carbon in anaerobic digestion of high-concentration brewery wastewater amidst continuous inoculation of Methanosarcina barkeri.	He H, Zeng Y, Dong H, Cui P, Lu W, Xu H, Qiu B, Sun D, Ma J, Dang Y.	Water Res	10.1016/j.watres.2024.122739	2025
Nature AND nurture: enabling formate-dependent growth in Methanosarcina acetivorans.	Bao J, Somvanshi T, Tian Y, Laird MG, Garcia PS, Schone C, Rother M, Borrel G, Scheller S.	FEBS J	10.1111/febs.17409	2025
Microbial adhesion behavior and participation of adhered and planktonic microorganisms in anaerobic digestion of leaf, epidermis, pith from corn stalk.	Wang L, Xu J, Li C, Hu X, Song C, Liu G, Chen C.	Bioresour Technol	10.1016/j.biortech.2025.132346	2025
Chemical mechanisms of biogas production from wastewater algal biomass via cobalt-catalysed pyrolysis and methanogenic co-digestion.	Zuo N, He J, Tan X.	PLoS One	10.1371/journal.pone.0321364	2025
Solar-Driven Methanogenesis through Microbial Ecosystem Engineering on Carbon Nitride.	Kalathil S, Rahaman M, Lam E, Augustin TL, Greer HF, Reisner E.	Angew Chem Int Ed Engl	10.1002/anie.202409192	2024
Liquid Metal Nanobiohybrids for High-Performance Solar-Driven Methanogenesis via Multi-Interface Engineering.	Gu W, Hu J, Li L, Hong M, Zhang D, Chen J, Ye J, Zhou S.	Angew Chem Int Ed Engl	10.1002/anie.202423336	2025
Enhanced Extracellular Electron Transfer in Magnetite-Mediated Anaerobic Oxidation of Methane Coupled to Humic Substances Reduction: The Pivotal Role of Membrane-Bound Electron Transfer Proteins.	Liang L, Jin Z, Tao Y, Li Y, Zhao Z, Zhang Y.	Environ Sci Technol	10.1021/acs.est.4c05543	2024
Evolutionary Transitions of DNA Replication Origins Between Archaea and Bacteria.	Saranya S, Prathiviraj R, Chellapandi P.	J Basic Microbiol	10.1002/jobm.202400527	2025
Activated Carbon and Syntrophy Accelerate the Corrosion of Stainless Steel Under Strict Anaerobic Conditions by Methanosarcina barkeri.	Zhou C, Huang S, Li H, Dong H, Zhang H, Chen W, Dang Y.	Microorganisms	10.3390/microorganisms13061278	2025
Natural AIEgens as Ultraviolet Sunscreens and Photosynergists for Solar Fuel Production.	Gu W, Hu J, Li L, Hong M, Yang C, Ren G, Ye J, Zhou S.	Environ Sci Technol	10.1021/acs.est.4c05605	2024
Revealing Co-N₄ @Co-NP Bridge-Enabled Fast Charge Transfer and Active Intracellular Methanogenesis in Bio-Electrochemical CO₂ -Conversion with Methanosarcina Barkeri.	Xia R, Cheng J, Chen Z, Zhang Z, Zhou X, Zhou J, Zhang M.	Adv Mater	10.1002/adma.202304920	2023
Hydrogenotrophic methanogenesis at 7-12 mbar by Methanosarcina barkeri under simulated martian atmospheric conditions.	Harris RL, Schuerger AC.	Sci Rep	10.1038/s41598-025-86145-1	2025
Non-conductive silicon-containing materials improve methane production by pure cultures of methanogens.	Braga CSN, Martins G, Soares OSGP, Pereira MFR, Pereira IAC, Pereira L, Alves MM, Salvador AF.	Bioresour Technol	10.1016/j.biortech.2024.131144	2024
Physiological Responses of Methanosarcina barkeri under Ammonia Stress at the Molecular Level: The Unignorable Lipid Reprogramming.	Liu C, Zhang X, Chen C, Yin Y, Zhao G, Chen Y.	Environ Sci Technol	10.1021/acs.est.2c09631	2023
Impact of mineral and non-mineral sources of iron and sulfur on the metalloproteome of Methanosarcina barkeri.	Larson J, Tokmina-Lukaszewska M, Payne D, Spietz RL, Fausset H, Alam MG, Brekke BK, Pauley J, Hasenoehrl EJ, Shepard EM, Boyd ES, Bothner B.	Appl Environ Microbiol	10.1128/aem.00516-24	2024
Metagenomic and physicochemical profiling reveal microbial functions in pit mud for Jiang-Nong Jianxiang Baijiu fermentation.	Cao L, Sun H, Xu Z, Xu X, Shi G, Zhang J, Liang C, Li T, Liu C, Wang M, Tian S, Li E.	BMC Microbiol	10.1186/s12866-025-03884-x	2025
Methylations with methanol via bioinspired catalytic C-O bond cleavage.	Huang Q, Xiang Y, Wu Y, Zheng Y, Liao RZ, Xie Y.	Nat Commun	10.1038/s41467-025-61200-7	2025
Ultrastructure of Serratia liquefaciens Grown at 7 mbar Under Simulated Martian Conditions.	Schuerger AC, Kelley KL.	Microorganisms	10.3390/microorganisms13112466	2025
Anaerobic methane oxidation coupled to ferrihydrite reduction by Methanosarcina barkeri.	Yu L, He D, Yang L, Rensing C, Zeng RJ, Zhou S.	Sci Total Environ	10.1016/j.scitotenv.2022.157235	2022
Sustainable Conversion of Microplastics to Methane with Ultrahigh Selectivity by a Biotic-Abiotic Hybrid Photocatalytic System.	Ye J, Chen Y, Gao C, Wang C, Hu A, Dong G, Chen Z, Zhou S, Xiong Y.	Angew Chem Int Ed Engl	10.1002/anie.202213244	2022
A constraint-based framework for exploring the impact of multireaction dependencies on metabolic functions.	Kuken A, Langary D, Angeleska A, Nikoloski Z.	NPJ Syst Biol Appl	10.1038/s41540-025-00608-9	2025
Metabolic Regulation of Mesophilic Methanosarcina barkeri to Ammonium Inhibition.	Duan H, He P, Zhang H, Shao L, Lu F.	Environ Sci Technol	10.1021/acs.est.2c01212	2022
Metal-Free Semiconductor-Based Bio-Nano Hybrids for Sustainable CO₂ -to-CH₄ Conversion with High Quantum Yield.	Hu A, Ye J, Ren G, Qi Y, Chen Y, Zhou S.	Angew Chem Int Ed Engl	10.1002/anie.202206508	2022
Influence of oxygen on the vinyl acetate elimination pathway and microbial community structure of methanogenic sludge.	Duran U, Monroy O, Gomez J, Ramirez F.	Water Environ Res	10.1002/wer.1666	2022
The robustness of porin-cytochrome gene clusters from Geobacter metallireducens in extracellular electron transfer.	Zhuo S, Jiang Y, Qi L, Hu Y, Jiang Z, Dong Y, Shi L.	mBio	10.1128/mbio.00580-24	2024
Accelerated enumeration of extreme rays through a positive-definite elementarity test.	Mores W, Bhonsale SS, Logist F, Van Impe JFM.	Bioinformatics	10.1093/bioinformatics/btae723	2024
Methanogens acquire and bioaccumulate nickel during reductive dissolution of nickelian pyrite.	Spietz RL, Payne D, Boyd ES.	Appl Environ Microbiol	10.1128/aem.00991-23	2023
PyCoMo: a python package for community metabolic model creation and analysis.	Predl M, Miesskes M, Rattei T, Zanghellini J.	Bioinformatics	10.1093/bioinformatics/btae153	2024
Methanosarcina acetivorans requires methanol:coenzyme M methyltransferases for ethane formation from ethanol.	Somvanshi T, Tran MA, Bao J, Scheller S.	Antonie Van Leeuwenhoek	10.1007/s10482-025-02165-x	2025
Enhancement of direct interspecies electron transfer and methane production by co-culture of dual Methanosarcina species and Geobacter metallireducens.	Liu L, Li P, Dong H, Liu C, Li H, Ma Z, Li R, Dang Y.	Front Microbiol	10.3389/fmicb.2025.1604265	2025
The Radical SAM Heme Synthase AhbD from Methanosarcina barkeri Contains Two Auxiliary [4Fe-4S] Clusters.	Fix I, Heidinger L, Friedrich T, Layer G.	Biomolecules	10.3390/biom13081268	2023
Impacts of combined water-saving irrigation and controlled-release urea on CH₄ emission and its associated microbial communities and function.	Ma C, Wu J, Li F.	Sci Total Environ	10.1016/j.scitotenv.2022.154724	2022
Self-replicating Biophotoelectrochemistry System for Sustainable CO Methanation.	Wang C, Yu J, Ren G, Hu A, Liu X, Chen Y, Ye J, Zhou S, He Z.	Environ Sci Technol	10.1021/acs.est.1c08340	2022
Deciphering the microbial communities of alkaline hot spring in Panamik, Ladakh, India using a high-throughput sequencing approach.	Choudhary G, Kumari S, Anu K, Devi S.	Braz J Microbiol	10.1007/s42770-024-01346-6	2024
Substrate-dependent incorporation of carbon and hydrogen for lipid biosynthesis by Methanosarcina barkeri.	Wu W, Meador TB, Konneke M, Elvert M, Wegener G, Hinrichs KU.	Environ Microbiol Rep	10.1111/1758-2229.12876	2020
Structural and Spectroscopic Insights into Catalytic Intermediates of a [NiFe]-hydrogenase from Group 3.	Jespersen M, Lorent C, Lemaire ON, Zebger I, Wagner T.	Chembiochem	10.1002/cbic.202500692	2025
Kinetic and substrate complex characterization of RamA, a corrinoid protein reductive activase from Methanosarcina barkeri.	Huening KA, Jiang R, Krzycki JA.	FEMS Microbiol Lett	10.1093/femsle/fnaa128	2020
Microbial adaptation and response to high ammonia concentrations and precipitates during anaerobic digestion under psychrophilic and mesophilic conditions.	Quispe-Cardenas E, Rogers S.	Water Res	10.1016/j.watres.2021.117596	2021
Formation of Zerovalent Iron in Iron-Reducing Cultures of Methanosarcina barkeri.	Shang H, Daye M, Sivan O, Borlina CS, Tamura N, Weiss BP, Bosak T.	Environ Sci Technol	10.1021/acs.est.0c01595	2020
Adaptation of Methanosarcina barkeri 227 as acetate scavenger for succinate fermentation by Actinobacillus succinogenes.	Kim SN, Cho YB, Park JW, Kim OB.	Appl Microbiol Biotechnol	10.1007/s00253-020-10494-2	2020
Effects of soil texture on microbial community composition and abundance under alternate wetting and drying in paddy soils of central Thailand.	Arunrat N, Sereenonchai S, Uttarotai T.	Sci Rep	10.1038/s41598-025-09843-w	2025
Structural organization of pyruvate: ferredoxin oxidoreductase from the methanogenic archaeon Methanosarcina acetivorans.	Cossu M, Catlin D, Elliott SJ, Metcalf WW, Nair SK.	Structure	10.1016/j.str.2024.08.011	2024
Potential Role of Methanogens in Microbial Reductive Dechlorination of Organic Chlorinated Pollutants In Situ.	Yuan J, Li S, Cheng J, Guo C, Shen C, He J, Yang Y, Hu P, Xu J, He Y.	Environ Sci Technol	10.1021/acs.est.0c08631	2021
Methanogenic archaea encoding Pyrrolysine maintain ambiguous amber codon usage.	Shalvarjian KE, Chadwick GL, Perez PI, Woods PH, Orphan VJ, Nayak DD.	Proc Natl Acad Sci U S A	10.1073/pnas.2517473122	2025
Theoretical characterisation of electron tunnelling from granular activated carbon to electron accepting organisms in direct interspecies electron transfer.	Rao R, Hu J, Lee PH.	Sci Rep	10.1038/s41598-022-15606-8	2022
Carbon nanotubes accelerate acetoclastic methanogenesis: From pure cultures to anaerobic soils	Xiao L, Zheng S, Lichtfouse E, Luo M, Tan Y, Liu F.	Soil Biol Biochem	10.1016/j.soilbio.2020.107938	2020
Metagenomic Analysis of Surface Waters and Wastewater in the Colombian Andean Highlands: Implications for Health and Disease.	Urrea V, Paez-Triana L, Velasquez-Ortiz N, Camargo M, Patino LH, Vega L, Ballesteros N, Hidalgo-Troya A, Galeano LA, Ramirez JD, Munoz M.	Curr Microbiol	10.1007/s00284-024-04019-7	2025
An evolved pyrrolysyl-tRNA synthetase with polysubstrate specificity expands the toolbox for engineering enzymes with incorporation of noncanonical amino acids.	Liu K, Jiang L, Ma S, Song Z, Wang L, Zhang Q, Xu R, Yang L, Wu J, Yu H.	Bioresour Bioprocess	10.1186/s40643-023-00712-w	2023
Development of orthogonal aminoacyl-tRNA synthetase mutant for incorporating a non-canonical amino acid.	Lee D, Kim JG, Kim TW, Choi JI.	AMB Express	10.1186/s13568-024-01706-3	2024
The inclusion of insect meal from Hermetia illucens larvae in the diet of laying hens (Hy-line Brown) affects the caecal diversity of methanogenic archaea.	Mahayri TM, Mrazek J, Bovera F, Piccolo G, Murgia GA, Moniello G, Fliegerova KO.	Poult Sci	10.1016/j.psj.2025.105037	2025
Fully Productive Cell-Free Genetic Code Expansion by Structure-Based Engineering of Methanomethylophilus alvus Pyrrolysyl-tRNA Synthetase.	Seki E, Yanagisawa T, Kuratani M, Sakamoto K, Yokoyama S.	ACS Synth Biol	10.1021/acssynbio.9b00288	2020
Predicting the polyspecificity of aminoacyl-tRNA synthetase for non-canonical amino acids using molecular dynamics simulation and MM/PBSA.	Lee D, Choi JI.	PLoS One	10.1371/journal.pone.0316907	2025
Pyrrolysine Aminoacyl-tRNA Synthetase as a Tool for Expanding the Genetic Code.	Dakhnevich A, Kazakova A, Iliushin D, Ivanov RA.	Int J Mol Sci	10.3390/ijms26020539	2025
A Genetically Encoded Homocysteine Precursor to Probe Protein Active Sites and to Addict Escherichia coli to a Noncanonical Amino Acid Directly Involved in Catalysis.	Dunker C, Mootz HD.	Angew Chem Int Ed Engl	10.1002/anie.202509112	2025
Rapid shift in greenhouse forcing of emerging arctic peatlands.	Christensen TR, Scheller J, Scheel M, Rudd DA, Jackowicz-Korczynski M, Mastepanov M, Lopez-Blanco E.	Sci Rep	10.1038/s41598-023-29859-4	2023
Genome reduction in novel, obligately methyl-reducing Methanosarcinales isolated from arthropod guts (Methanolapillus gen. nov. and Methanimicrococcus).	Protasov E, Reeh H, Liu P, Poehlein A, Platt K, Heimerl T, Herve V, Daniel R, Brune A.	FEMS Microbiol Ecol	10.1093/femsec/fiae111	2024
Isotopologue Ratios Identify ¹³C-Depleted Biomarkers in Environmental Samples Impacted by Methane Turnover.	Groninga J, Lipp J, Song M, Hinrichs KU.	Rapid Commun Mass Spectrom	10.1002/rcm.10118	2025
ModE Regulates Alternative Nitrogenase Expression in the Methanogen Methanosarcina acetivorans.	Chanderban M, Lessner DJ.	Mol Microbiol	10.1111/mmi.15377	2025
Methanolobus use unspecific methyltransferases to produce methane from dimethylsulphide in Baltic Sea sediments.	Tsola SL, Zhu Y, Chen Y, Sanders IA, Economou CK, Bruchert V, Eyice O.	Microbiome	10.1186/s40168-023-01720-w	2024
Sulfur-tetrazine as highly efficient visible-light activatable photo-trigger for designing photoactivatable fluorescence biomolecules.	Yang S, Zhang M, Loredo A, Soares D, Wu Y, Xiao H.	J Mater Chem B	10.1039/d4tb01817f	2024
An unnatural amino acid dependent, conditional Pseudomonas vaccine prevents bacterial infection.	Pigula M, Lai YC, Koh M, Diercks CS, Rogers TF, Dik DA, Schultz PG.	Nat Commun	10.1038/s41467-024-50843-7	2024
Structures of Methanomethylophilus alvus Pyrrolysine tRNA-Synthetases Support the Need for De Novo Selections When Altering the Substrate Specificity.	Gottfried-Lee I, Perona JJ, Karplus PA, Mehl RA, Cooley RB.	ACS Chem Biol	10.1021/acschembio.2c00640	2022
Effects of temperature, chloride and perchlorate salt concentration on the metabolic activity of Deinococcus radiodurans.	Symeonidou E, Jorgensen UG, Madsen MB, Prieme A.	Extremophiles	10.1007/s00792-024-01351-5	2024
Capturing a methanogenic carbon monoxide dehydrogenase/acetyl-CoA synthase complex via cryogenic electron microscopy.	Biester A, Grahame DA, Drennan CL.	Proc Natl Acad Sci U S A	10.1073/pnas.2410995121	2024
Pyruvate-dependent growth of Methanosarcina acetivorans.	Richter M, Sattler C, Schone C, Rother M.	J Bacteriol	10.1128/jb.00363-23	2024
An efficient pyrrolysyl-tRNA synthetase for economical production of MeHis-containing enzymes.	Hutton AE, Foster J, Sanders JEJ, Taylor CJ, Hoffmann SA, Cai Y, Lovelock SL, Green AP.	Faraday Discuss	10.1039/d4fd00019f	2024
Structure and metabolic function of spatiotemporal pit mud microbiome.	Li Z, Zhao C, Mao Z, Zhang F, Dong L, Song C, Chen Y, Fu X, Ao Z, Xiong Y, Hui Q, Song W, Penttinen P, Zhang S.	Environ Microbiome	10.1186/s40793-025-00668-8	2025
Physiological and transcriptomic response to methyl-coenzyme M reductase limitation in Methanosarcina acetivorans.	Chadwick GL, Dury GA, Nayak DD.	Appl Environ Microbiol	10.1128/aem.02220-23	2024
In vitro methanol production from methyl coenzyme M using the Methanosarcina barkeri MtaABC protein complex.	Dong M, Gonzalez TD, Klems MM, Steinberg LM, Chen W, Papoutsakis ET, Bahnson BJ.	Biotechnol Prog	10.1002/btpr.2503	2017
Mitigation of ammonia inhibition through bioaugmentation with different microorganisms during anaerobic digestion: Selection of strains and reactor performance evaluation.	Yang Z, Wang W, Liu C, Zhang R, Liu G.	Water Res	10.1016/j.watres.2019.02.048	2019
Genetic and Physiological Probing of Cytoplasmic Bypasses for the Energy-Converting Methyltransferase Mtr in Methanosarcina acetivorans.	Schone C, Poehlein A, Rother M.	Appl Environ Microbiol	10.1128/aem.02161-22	2023
Mutational and structural studies of (betaalpha)₈-barrel fold methylene-tetrahydropterin reductases utilizing a common catalytic mechanism.	Gehl M, Demmer U, Ermler U, Shima S.	Protein Sci	10.1002/pro.5018	2024
Streptomyces albus: A New Cell Factory for Non-Canonical Amino Acids Incorporation into Ribosomally Synthesized Natural Products.	Lopatniuk M, Myronovskyi M, Luzhetskyy A.	ACS Chem Biol	10.1021/acschembio.7b00359	2017
Insights into pyrrolysine function from structures of a trimethylamine methyltransferase and its corrinoid protein complex.	Li J, Kang PT, Jiang R, Lee JY, Soares JA, Krzycki JA, Chan MK.	Commun Biol	10.1038/s42003-022-04397-3	2023
Methanomethylovorans are the dominant dimethylsulfide-degrading methanogens in gravel and sandy river sediment microcosms.	Tsola SL, Prevodnik AA, Sinclair LF, Sanders IA, Economou CK, Eyice O.	Environ Microbiome	10.1186/s40793-024-00591-4	2024
Trapping the substrate radical of heme synthase AhbD.	Heidinger L, Fix I, Friedrich T, Layer G.	Front Chem	10.3389/fchem.2024.1430796	2024
Response of Methanogenic Archaea from Siberian Permafrost and Non-permafrost Environments to Simulated Mars-like Desiccation and the Presence of Perchlorate.	Serrano P, Alawi M, de Vera JP, Wagner D.	Astrobiology	10.1089/ast.2018.1877	2019
Understanding the sources, function, and irreplaceable role of cobamides in organohalide-respiring bacteria.	Lu Y, Lu F, Zhang J, Tang Q, Yang D, Liu Y.	Front Microbiol	10.3389/fmicb.2024.1435674	2024
A robust platform streamlining aromatic noncanonical amino acid biosynthesis and genetic code expansion in Escherichia coli.	Zhang J, Yu K, Xu Y, Zhao W, Li Y, Wang Y, Seebeck FP, Chen XH, Liao C.	Nat Commun	10.1038/s41467-025-63679-6	2025
Carbon-13 stable isotope analysis reveals the existence but insignificance of ruminal methanogenic pathway from acetate in a batch culture system	He ZX, Qiao JY, Tan ZL, Wang M.	Anim Feed Sci Technol	10.1016/j.anifeedsci.2018.10.002	2018
- Invited Review - Ruminal ciliates as modulators of the rumen microbiome.	Park T.	Anim Biosci	10.5713/ab.23.0309	2024
Modeling reveals a metabolic basis of competition among Dehalobacter strains during tandem chloroform and dichloromethane metabolism.	Bulka O, Edwards EA, Mahadevan R.	mSystems	10.1128/msystems.00847-25	2025
One-pot dual protein labeling for simultaneous mechanical and fluorescent readouts in optical tweezers.	Silbermann LM, Fottner M, van der Meulen R, Migdad N, Lang K, Tych K.	Protein Sci	10.1002/pro.70098	2025
Orthogonal Protein Translation Using Pyrrolysyl-tRNA Synthetases for Single- and Multiple-Noncanonical Amino Acid Mutagenesis.	Baumann T, Exner M, Budisa N.	Adv Biochem Eng Biotechnol	10.1007/10_2016_37	2018
Methane Production and Conductive Materials: A Critical Review.	Martins G, Salvador AF, Pereira L, Alves MM.	Environ Sci Technol	10.1021/acs.est.8b01913	2018
Engineering a non-oxidative glycolysis pathway in escherichia coli for high-level citramalate production.	Wang T, Ding L, Luo H, Huang H, Su X, Bai Y, Tu T, Wang Y, Qin X, Zhang H, Wang Y, Yao B, Zhang J, Wang X.	Microb Cell Fact	10.1186/s12934-024-02505-y	2024
Genetic code expansion and enzymatic modifications as accessible methods for studying site-specific post-translational modifications of alpha-synuclein and tau.	Saleh IG, Shimogawa M, Ramirez J, Abakah B, Venkatesh Y, James HP, Li MH, Louie SA, Lougee MG, Chia WK, Brue C, Cooley RB, Mehl RA, Baumgart T, Mach RH, Eliezer D, Rhoades E, Petersson EJ.	Protein Sci	10.1002/pro.70302	2025
The Hydrogen Economy of Methanosarcina barkeri: Life in the Fast Lane.	Lovley DR.	J Bacteriol	10.1128/jb.00445-18	2018
Crystal Structure of Pyrrolysyl-tRNA Synthetase from a Methanogenic Archaeon ISO4-G1 and Its Structure-Based Engineering for Highly-Productive Cell-Free Genetic Code Expansion with Non-Canonical Amino Acids.	Yanagisawa T, Seki E, Tanabe H, Fujii Y, Sakamoto K, Yokoyama S.	Int J Mol Sci	10.3390/ijms24076256	2023
Transcriptional response to prolonged perchlorate exposure in the methanogen Methanosarcina barkeri and implications for Martian habitability.	Harris RL, Schuerger AC, Wang W, Tamama Y, Garvin ZK, Onstott TC.	Sci Rep	10.1038/s41598-021-91882-0	2021
Physicochemical analysis of initial adhesion and biofilm formation of Methanosarcina barkeri on polymer support material.	Nguyen V, Karunakaran E, Collins G, Biggs CA.	Colloids Surf B Biointerfaces	10.1016/j.colsurfb.2016.03.042	2016
Non-Respiratory Extracellular Electron Transfer Competes with Nitrogenase for Electrons in Rhodopseudomonas Palustris.	Liu X, Qi P, Fan W, Liu W, Li X, Nie Y, Wu XL.	Adv Sci (Weinh)	10.1002/advs.202501376	2025
Magnetite drives microbial community restructuring and stimulates aceticlastic methanogenesis of type II Methanosarcina in mangrove sediments.	Zhou J, Zhang CJ, Zou D, Gu C, Li M.	Microbiome	10.1186/s40168-025-02157-z	2025
Effect of different ammonia sources on aceticlastic and hydrogenotrophic methanogens.	Tian H, Fotidis IA, Kissas K, Angelidaki I.	Bioresour Technol	10.1016/j.biortech.2017.11.081	2018
Low Pressure Tolerance by Methanogens in an Aqueous Environment: Implications for Subsurface Life on Mars.	Mickol RL, Kral TA.	Orig Life Evol Biosph	10.1007/s11084-016-9519-9	2017
Transcriptomic evidence for an energetically advantageous relationship between Syntrophomonas wolfei and Methanothrix soehngenii.	Besteman MS, Doloman A, Sousa DZ.	Environ Microbiol Rep	10.1111/1758-2229.13276	2024
Exploration of Methanomethylophilus alvus Pyrrolysyl-tRNA Synthetase Activity in Yeast.	Stieglitz JT, Lahiri P, Stout MI, Van Deventer JA.	ACS Synth Biol	10.1021/acssynbio.2c00001	2022
Quantitative evaluation of ruminal methane and carbon dioxide formation from formate through C-13 stable isotope analysis in a batch culture system.	He ZX, Qiao JY, Yan QX, Tan ZL, Wang M.	Animal	10.1017/s1751731118000691	2019
Peripheral CD4⁺ T cells mediate the destructive effects of maternal separation on prefrontal myelination and cognitive functions.	Xiong R, Hu Y, Wang M, Han T, Hu Y, Ma C, Li B.	Proc Natl Acad Sci U S A	10.1073/pnas.2412995122	2025
Powering the Future: Unveiling the Secrets of Semiconductor Biointerfaces in Biohybrids for Semiartificial Photosynthesis.	Burns C, Gibson EA, Fuller L, Kalathil S.	Artif Photosynth	10.1021/aps.4c00008	2025
Phylogenetically and metabolically diverse active carbon-fixing microbes reside in mangrove sediments.	Wang S, Zhao Z, Cheng R, Cui L, Wang J, Rubin-Blum M, Zhang Y, Liu B, Chen X, Baltar F, Cao X, Wen X, Alain K, Chen Z, Liao J, Jiang L, Shao Z.	Microbiome	10.1186/s40168-025-02177-9	2025
Anaerobic Production of Isoprene by Engineered Methanosarcina Species Archaea.	Aldridge J, Carr S, Weber KA, Buan NR.	Appl Environ Microbiol	10.1128/aem.02417-20	2021
Enhanced Radiation Resistance of Methanosarcina soligelidi SMA-21, a New Methanogenic Archaeon Isolated from a Siberian Permafrost-Affected Soil in Direct Comparison to Methanosarcina barkeri.	Morozova D, Moeller R, Rettberg P, Wagner D.	Astrobiology	10.1089/ast.2015.1319	2015
Genetic and biochemical characterization of a radical SAM enzyme required for post-translational glutamine methylation of methyl-coenzyme M reductase.	Rodriguez Carrero RJ, Lloyd CT, Borkar J, Nath S, Mirica LM, Nair S, Booker SJ, Metcalf W.	mBio	10.1128/mbio.03546-24	2025
Magnetite production and transformation in the methanogenic consortia from coastal riverine sediments.	Zheng S, Wang B, Liu F, Wang O.	J Microbiol	10.1007/s12275-017-7104-1	2017
Genetic Encoding of Arylazopyrazole Phenylalanine for Optical Control of Translation.	Janosko CP, Shade O, Courtney TM, Horst TJ, Liu M, Khare SD, Deiters A.	ACS Omega	10.1021/acsomega.3c03512	2023
Comprehensive gut microbiota composition and microbial interactions among the three age groups.	Ma J, Yang X, He J.	PLoS One	10.1371/journal.pone.0305583	2024
Directed Evolution of the Methanosarcina barkeri Pyrrolysyl tRNA/aminoacyl tRNA Synthetase Pair for Rapid Evaluation of Sense Codon Reassignment Potential.	Schwark DG, Schmitt MA, Fisk JD.	Int J Mol Sci	10.3390/ijms22020895	2021
Methanogens rapidly transition from methane production to iron reduction.	Sivan O, Shusta SS, Valentine DL.	Geobiology	10.1111/gbi.12172	2016
Aged-engineered nanoparticles effect on sludge anaerobic digestion performance and associated microbial communities.	Eduok S, Ferguson R, Jefferson B, Villa R, Coulon F.	Sci Total Environ	10.1016/j.scitotenv.2017.07.178	2017
Increasing sulfate levels show a differential impact on synthetic communities comprising different methanogens and a sulfate reducer.	Chen J, Wade MJ, Dolfing J, Soyer OS.	J R Soc Interface	10.1098/rsif.2019.0129	2019
Acetate Shock Loads Enhance CO Uptake Rates of Anaerobic Microbiomes.	Robazza A, Raya I Garcia A, Baleeiro FCF, Kleinsteuber S, Neumann A.	Microb Biotechnol	10.1111/1751-7915.70063	2024
Expanding the Genetic Code for a Dinitrophenyl Hapten.	Ren W, Ji A, Wang MX, Ai HW.	Chembiochem	10.1002/cbic.201500204	2015
Phylogenomic proximity and metabolic discrepancy of Methanosarcina mazei Go1 across methanosarcinal genomes.	Bharathi M, Chellapandi P.	Biosystems	10.1016/j.biosystems.2017.03.002	2017
Direct Interspecies Electron Transfer Mediated by Graphene Oxide-Based Materials.	Igarashi K, Miyako E, Kato S.	Front Microbiol	10.3389/fmicb.2019.03068	2019
Chemically Acylated tRNAs are Functional in Zebrafish Embryos.	Brown W, Galpin JD, Rosenblum C, Tsang M, Ahern CA, Deiters A.	J Am Chem Soc	10.1021/jacs.2c11452	2023
X-ray Crystallography and Vibrational Spectroscopy Reveal the Key Determinants of Biocatalytic Dihydrogen Cycling by [NiFe] Hydrogenases.	Ilina Y, Lorent C, Katz S, Jeoung JH, Shima S, Horch M, Zebger I, Dobbek H.	Angew Chem Int Ed Engl	10.1002/anie.201908258	2019
Putative Extracellular Electron Transfer in Methanogenic Archaea.	Gao K, Lu Y.	Front Microbiol	10.3389/fmicb.2021.611739	2021
Deciphering Microbial Communities and Distinct Metabolic Pathways in the Tangyin Hydrothermal Fields of Okinawa Trough through Metagenomic and Genomic Analyses.	Li J, Cheng H, Yin F, Liu J, Zhang XH, Yu M.	Microorganisms	10.3390/microorganisms12030517	2024
An Archaea-specific c-type cytochrome maturation machinery is crucial for methanogenesis in Methanosarcina acetivorans.	Gupta D, Shalvarjian KE, Nayak DD.	Elife	10.7554/elife.76970	2022
Genetically Encoded Lysine Analogues with Differential Light Sensitivity for Activation of Protein Function	Wesalo J, Liu Q, Luo J, Shade O, Deiters A.	ChemPhotoChem		2024
Branched DNA processing by a thermostable CAS-Cas4 from Thermococcus onnurineus: Expanding biochemical landscape of nuclease activity.	Jain M, Pattnayak AK, Aggarwal S, Rai P, Kavya J, Chandrayan S, Goel M, Gaur V.	J Biol Chem	10.1016/j.jbc.2025.110701	2025
Class III hybrid cluster protein homodimeric architecture shows evolutionary relationship with Ni, Fe-carbon monoxide dehydrogenases.	Fujishiro T, Takaoka K.	Nat Commun	10.1038/s41467-023-41289-4	2023
Dual RNase and beta-lactamase Activity of a Single Enzyme Encoded in Archaea.	Diene SM, Pinault L, Armstrong N, Azza S, Keshri V, Khelaifia S, Chabriere E, Caetano-Anolles G, Rolain JM, Pontarotti P, Raoult D.	Life (Basel)	10.3390/life10110280	2020
NanoFe₃O₄ as Solid Electron Shuttles to Accelerate Acetotrophic Methanogenesis by Methanosarcina barkeri.	Fu L, Zhou T, Wang J, You L, Lu Y, Yu L, Zhou S.	Front Microbiol	10.3389/fmicb.2019.00388	2019
Click Chemistry with Cell-Permeable Fluorophores Expands the Choice of Bioorthogonal Markers for Two-Color Live-Cell STED Nanoscopy.	Gregor C, Grimm F, Rehman J, Wurm CA, Egner A.	Cells	10.3390/cells13080683	2024
Structural Insights into the Methane-Generating Enzyme from a Methoxydotrophic Methanogen Reveal a Restrained Gallery of Post-Translational Modifications.	Kurth JM, Muller MC, Welte CU, Wagner T.	Microorganisms	10.3390/microorganisms9040837	2021
Genetically encoded lysine photocage for spatiotemporal control of TDP-43 nuclear import.	Shadish JA, Lee JC.	Biophys Chem	10.1016/j.bpc.2024.107191	2024
Identification of a novel archaea virus, detected in hydrocarbon polluted Hungarian and Canadian samples.	Molnar J, Magyar B, Schneider G, Laczi K, Valappil SK, Kovacs AL, Nagy IK, Rakhely G, Kovacs T.	PLoS One	10.1371/journal.pone.0231864	2020
Bilayer-Forming Lipids Enhance Archaeal Monolayer Membrane Stability.	Saracco M, Schaeffer P, Tourte M, Albers SV, Louis Y, Peters J, Deme B, Fontanay S, Oger PM.	Int J Mol Sci	10.3390/ijms26073045	2025
Generating Efficient Methanomethylophilus alvus Pyrrolysyl-tRNA Synthetases for Structurally Diverse Non-Canonical Amino Acids.	Avila-Crump S, Hemshorn ML, Jones CM, Mbengi L, Meyer K, Griffis JA, Jana S, Petrina GE, Pagar VV, Karplus PA, Petersson EJ, Perona JJ, Mehl RA, Cooley RB.	ACS Chem Biol	10.1021/acschembio.2c00639	2022
Engineering a Polyspecific Pyrrolysyl-tRNA Synthetase by a High Throughput FACS Screen.	Hohl A, Karan R, Akal A, Renn D, Liu X, Ghorpade S, Groll M, Rueping M, Eppinger J.	Sci Rep	10.1038/s41598-019-48357-0	2019
Perspectives on Microbial Electron Transfer Networks for Environmental Biotechnology.	Zhou S, Song D, Gu JD, Yang Y, Xu M.	Front Microbiol	10.3389/fmicb.2022.845796	2022
Influence of Liquid-to-Gas Ratio on the Syngas Fermentation Efficiency: An Experimental Approach.	Achinas S, Mulder SJ, Euverink GJW.	Bioengineering (Basel)	10.3390/bioengineering7040138	2020
Effective methane production from the Japanese weed Gyougi-shiba (Cynodon dactylon) is accomplished by colocalization of microbial communities that assimilate water-soluble and -insoluble fractions.	Matsuda S, Ohtsuki T.	FEMS Microbiol Lett	10.1093/femsle/fnab015	2021
Triple Labeling Resolves a GPCR Intermediate State by Using Three-Color Single Molecule FRET.	Bonhomme L, Bilgen E, Clerte C, Pin JP, Rondard P, Margeat E, Lamb DC, Quast RB.	J Am Chem Soc	10.1021/jacs.4c18364	2025
Mineralogical control on methylotrophic methanogenesis and implications for cryptic methane cycling in marine surface sediment.	Xiao KQ, Moore OW, Babakhani P, Curti L, Peacock CL.	Nat Commun	10.1038/s41467-022-30422-4	2022
Genetic Code Expansion in Shewanella oneidensis MR-1 Allows Site-Specific Incorporation of Bioorthogonal Functional Groups into a c-Type Cytochrome.	Lockwood CWJ, Nash BW, Newton-Payne SE, van Wonderen JH, Whiting KPS, Connolly A, Sutton-Cook AL, Crook A, Aithal AR, Edwards MJ, Clarke TA, Sachdeva A, Butt JN.	ACS Synth Biol	10.1021/acssynbio.4c00248	2024
Optimized plasmid systems for the incorporation of multiple different unnatural amino acids by evolved orthogonal ribosomes.	Lammers C, Hahn LE, Neumann H.	Chembiochem	10.1002/cbic.201402033	2014
Engineering unnatural cells with a 21st amino acid as a living epigenetic sensor.	Hu Y, Wang Y, Cheng L, Wang C, Liu Y, Wang Y, Chen Y, Yang S, Guo Y, Jiang S, Yang K, Xiao H.	Nat Commun	10.1038/s41467-025-64448-1	2025
Quantitative Analysis and Optimization of Site-Specific Protein Bioconjugation in Mammalian Cells.	Ryan A, Shade O, Bardhan A, Bartnik A, Deiters A.	Bioconjug Chem	10.1021/acs.bioconjchem.2c00451	2022
Role of biochar in anaerobic microbiome enrichment and methane production enhancement during olive mill wastewater biomethanization.	Abid N, Karray F, Kallel I, Slim M, Barakat A, Mhiri N, Chamkha M, Sayadi S.	Front Bioeng Biotechnol	10.3389/fbioe.2022.1100533	2022
Genomically and biochemically accurate metabolic reconstruction of Methanosarcina barkeri Fusaro, iMG746.	Gonnerman MC, Benedict MN, Feist AM, Metcalf WW, Price ND.	Biotechnol J	10.1002/biot.201200266	2013
Anaerobic demethylation of guaiacyl-derived monolignols enabled by a designed artificial cobalamin methyltransferase fusion enzyme.	Grimm C, Pompei S, Egger K, Fuchs M, Kroutil W.	RSC Adv	10.1039/d2ra08005b	2023
Enhancing biogas production from palm oil mill effluent through the synergistic application of surfactants and iron supplements.	Mekwichai P, Chutivisut P, Tuntiwiwattanapun N.	Heliyon	10.1016/j.heliyon.2024.e29617	2024
Isoform-specific optical activation of kinase function reveals p38-ERK signaling crosstalk.	Zhou W, Ryan A, Janosko CP, Shoger KE, Haugh JM, Gottschalk RA, Deiters A.	RSC Chem Biol	10.1039/d2cb00157h	2023
Cultivation and metabolic versatility of novel and ubiquitous chemolithoautotrophic Campylobacteria from mangrove sediments.	Cui L, Zhong Y, Li Y, Sievert SM, Huang Z, Wang W, Rubin-Blum M, Cao X, Wang Y, Shao Z, Lai Q, Wang S, Jiang L.	Microbiol Spectr	10.1128/spectrum.00367-25	2025
Unveiling the Biodiversity of Hyperthermophilic Archaea in Jharia Coal Mines: Potential Threat to Methanogenesis?	Jha P, Singh J, Vidyarthi AS, Prasad R.	Curr Genomics	10.2174/1389202921999200605151722	2020
Transferability of N-terminal mutations of pyrrolysyl-tRNA synthetase in one species to that in another species on unnatural amino acid incorporation efficiency.	Williams TL, Iskandar DJ, Nodling AR, Tan Y, Luk LYP, Tsai YH.	Amino Acids	10.1007/s00726-020-02927-z	2021
Engineering nonphotosynthetic carbon fixation for production of bioplastics by methanogenic archaea.	Thevasundaram K, Gallagher JJ, Cherng F, Chang MCY.	Proc Natl Acad Sci U S A	10.1073/pnas.2118638119	2022
Metagenomic Exploration Uncovers Several Novel 'Candidatus' Species Involved in Acetate Metabolism in High-Ammonia Thermophilic Biogas Processes.	Cheng GB, Bongcam-Rudloff E, Schnurer A.	Microb Biotechnol	10.1111/1751-7915.70133	2025
Energy Conservation via Hydrogen Cycling in the Methanogenic Archaeon Methanosarcina barkeri.	Kulkarni G, Mand TD, Metcalf WW.	mBio	10.1128/mbio.01256-18	2018
Assessment of Potential Anti-Methanogenic and Antimicrobial Activity of Ethyl Nitroacetate, alpha-Lipoic Acid, Taurine and L-Cysteinesulfinic Acid In Vitro.	Levent G, Bozic A, Petrujkic BT, Callaway TR, Poole TL, Crippen TL, Harvey RB, Ochoa-Garcia P, Corral-Luna A, Yeater KM, Anderson RC.	Microorganisms	10.3390/microorganisms12010034	2023
Effects of hydrogen in headspace and bicarbonate in media on rumen fermentation, methane production and methanogenic population using in vitro gas production techniques	Qiao JY, Tan ZL, Guan LL, Tang SX, Zhou CS, Han XF, Wang M, Kang JH, He ZX.	Anim Feed Sci Technol	10.1016/j.anifeedsci.2015.05.004	2015
Metapangenomic investigation provides insight into niche differentiation of methanogenic populations from the subsurface serpentinizing environment, Samail Ophiolite, Oman.	Thieringer PH, Boyd ES, Templeton AS, Spear JR.	Front Microbiol	10.3389/fmicb.2023.1205558	2023
McrD binds asymmetrically to methyl-coenzyme M reductase improving active-site accessibility during assembly.	Chadwick GL, Joiner AMN, Ramesh S, Mitchell DA, Nayak DD.	Proc Natl Acad Sci U S A	10.1073/pnas.2302815120	2023
Incorporation of Multiple beta²-Hydroxy Acids into a Protein In Vivo Using an Orthogonal Aminoacyl-tRNA Synthetase.	Hamlish NX, Abramyan AM, Shah B, Zhang Z, Schepartz A.	ACS Cent Sci	10.1021/acscentsci.3c01366	2024
Enhanced Electron Uptake and Methane Production by Corrosive Methanogens during Electromethanogenesis.	Mayer F, Sabel-Becker B, Holtmann D.	Microorganisms	10.3390/microorganisms10112237	2022
Probiotic performance of B. subtilis MS. 45 improves aquaculture of rainbow trout Oncorhynchus mykiss during acute hypoxia stress.	Neissi A, Majidi Zahed H, Roshan R.	Sci Rep	10.1038/s41598-024-54380-7	2024
Nanomaterials for Advanced Photocatalytic Plastic Conversion.	Kim JY, Youn DH.	Molecules	10.3390/molecules28186502	2023
Substrate Trapping in Polyketide Synthase Thioesterase Domains: Structural Basis for Macrolactone Formation.	McCullough TM, Choudhary V, Akey DL, Skiba MA, Bernard SM, Kittendorf JD, Schmidt JJ, Sherman DH, Smith JL.	ACS Catal	10.1021/acscatal.4c03637	2024
Electronic isomerism in a heterometallic nickel-iron-sulfur cluster models substrate binding and cyanide inhibition of carbon monoxide dehydrogenase.	Lewis LC, Sanabria-Gracia JA, Lee Y, Jenkins AJ, Shafaat HS.	Chem Sci	10.1039/d4sc00023d	2024
Methane-Linked Mechanisms of Electron Uptake from Cathodes by Methanosarcina barkeri.	Rowe AR, Xu S, Gardel E, Bose A, Girguis P, Amend JP, El-Naggar MY.	mBio	10.1128/mbio.02448-18	2019
Mechanical and cell-to-cell adhesive properties of aggregated Methanosarcina.	Milkevych V, Donose BC, Juste-Poinapen N, Batstone DJ.	Colloids Surf B Biointerfaces	10.1016/j.colsurfb.2014.12.035	2015
Expanded Diversity of Microbial Groups Capable of Anaerobic Pyrite Reduction and Assimilation of Dissolution Products.	Boyd ES, Payne D.	Environ Microbiol	10.1111/1462-2920.70125	2025
Accelerated Bioconversion of Chemically Solubilized Lignite Solution to Methane by Methanogenic Consortium: Experimental Results and Their Application to the Subsurface Cultivation and Gasification Method.	Ueno A, Tamazawa S, Tamamura S, Murakami T, Kiyama T, Inomata H, Aramaki N, Yoshida K, Yamaguchi S, Aoyama H, Naganuma T, Igarashi T.	Microorganisms	10.3390/microorganisms10101984	2022
Compiling a versatile toolbox for inducible gene expression in Methanosarcina mazei.	Huttermann J, Schmitz R.	Microlife	10.1093/femsml/uqae019	2024
Donor strand complementation and calcium ion coordination drive the chaperone-free polymerization of archaeal cannulae.	Sleutel M, Sonani RR, Miller JG, Wang F, Gonzalez Socorro A, Chen Y, Martin R, Demeler B, Rudolph MJ, Alva V, Remaut H, Egelman EH, Conticello VP.	Nat Commun	10.1038/s41467-025-64120-8	2025
Methane production by Methanothrix thermoacetophila via direct interspecies electron transfer with Geobacter metallireducens.	Zhou J, Smith JA, Li M, Holmes DE.	mBio	10.1128/mbio.00360-23	2023
Noncanonical amino acids as prophage inducers for protein regulation in bacteria-based delivery systems.	Liu H, Shen S, Xu Q, Wang Y, Qi K, Lu B, Tang B, Wu M, Gan F.	mBio	10.1128/mbio.03988-24	2025
Putative nucleotide-based second messengers in archaea.	van der Does C, Braun F, Ren H, Albers SV.	Microlife	10.1093/femsml/uqad027	2023
Redirecting electron flow in Acetobacterium woodii enables growth on CO and improves growth on formate.	Moon J, Poehlein A, Daniel R, Muller V.	Nat Commun	10.1038/s41467-024-49680-5	2024
A genome-scale metabolic model of Methanococcus maripaludis S2 for CO2 capture and conversion to methane.	Goyal N, Widiastuti H, Karimi IA, Zhou Z.	Mol Biosyst	10.1039/c3mb70421a	2014
FISH-TAMB, a Fixation-Free mRNA Fluorescent Labeling Technique to Target Transcriptionally Active Members in Microbial Communities.	Harris RL, Vetter MCYL, van Heerden E, Cason E, Vermeulen JG, Taneja A, Kieft TL, DeCoste CJ, Laevsky GS, Onstott TC.	Microb Ecol	10.1007/s00248-021-01809-5	2022
Carbon cloth stimulates direct interspecies electron transfer in syntrophic co-cultures.	Chen S, Rotaru AE, Liu F, Philips J, Woodard TL, Nevin KP, Lovley DR.	Bioresour Technol	10.1016/j.biortech.2014.09.009	2014
The nickel-sirohydrochlorin formation mechanism of the ancestral class II chelatase CfbA in coenzyme F430 biosynthesis.	Fujishiro T, Ogawa S.	Chem Sci	10.1039/d0sc05439a	2021
Measurement of microbial adhesive forces with a parallel plate flow chamber.	Yoshihara A, Narahara H, Kuriyama Y, Toyoda S, Tokumoto H, Konishi Y, Nomura T.	J Colloid Interface Sci	10.1016/j.jcis.2014.06.052	2014
Harnessing Engineered Microbial Consortia for Xenobiotic Bioremediation: Integrating Multi-Omics and AI for Next-Generation Wastewater Treatment.	Renganathan P, Gaysina LA, Garcia Gutierrez C, Rueda Puente EO, Sainz-Hernandez JC.	J Xenobiot	10.3390/jox15040133	2025
Efficient and selective energy transfer photoenzymes powered by visible light.	Crawshaw R, Smithson R, Hofer J, Hardy FJ, Roberts GW, Trimble JS, Kohn AR, Levy CW, Drost DA, Merten C, Heyes DJ, Obexer R, Bach T, Green AP.	Nat Chem	10.1038/s41557-025-01820-0	2025
Genetic, Biochemical, and Molecular Characterization of Methanosarcina barkeri Mutants Lacking Three Distinct Classes of Hydrogenase.	Mand TD, Kulkarni G, Metcalf WW.	J Bacteriol	10.1128/jb.00342-18	2018
Bio-electrosynthesis of polyhydroxybutyrate and surfactants in microbial fuel cells: a preliminary study.	Nastro RA, Kuppam C, Toscanesi M, Trifuoggi M, Pietrelli A, Pasquale V, Avignone-Rossa C.	Front Microbiol	10.3389/fmicb.2025.1372302	2025
Truncation-Free Genetic Code Expansion with Tetrazine Amino Acids for Quantitative Protein Ligations.	Eddins AJ, Bednar RM, Jana S, Pung AH, Mbengi L, Meyer K, Perona JJ, Cooley RB, Karplus PA, Mehl RA.	Bioconjug Chem	10.1021/acs.bioconjchem.3c00380	2023
Genetically Encoded Protein Tyrosine Nitration in Mammalian Cells.	Porter JJ, Jang HS, Van Fossen EM, Nguyen DP, Willi TS, Cooley RB, Mehl RA.	ACS Chem Biol	10.1021/acschembio.9b00371	2019
Comparative Transcriptomics Sheds Light on Remodeling of Gene Expression during Diazotrophy in the Thermophilic Methanogen Methanothermococcus thermolithotrophicus.	Maslac N, Sidhu C, Teeling H, Wagner T.	mBio	10.1128/mbio.02443-22	2022
Short-term dietary fiber interventions produce consistent gut microbiome responses across studies.	Rodriguez CI, Isobe K, Martiny JBH.	mSystems	10.1128/msystems.00133-24	2024
Orthogonality of Pyrrolysine tRNA in the Xenopus oocyte.	Infield DT, Lueck JD, Galpin JD, Galles GD, Ahern CA.	Sci Rep	10.1038/s41598-018-23201-z	2018
Global connectivity in genome-scale metabolic networks revealed by comprehensive FBA-based pathway analysis.	Gao Y, Yuan Q, Mao Z, Liu H, Ma H.	BMC Microbiol	10.1186/s12866-021-02357-1	2021
Genetic Code Expansion in Pseudomonas putida KT2440.	He X, Gao T, Chen Y, Liu K, Guo J, Niu W.	ACS Synth Biol	10.1021/acssynbio.2c00325	2022
Effect of the addition of rice straw on microbial community in a sewage sludge digester.	Nakakihara E, Ikemoto-Yamamoto R, Honda R, Ohtsuki S, Takano M, Suetsugu Y, Watanabe H.	Water Sci Technol	10.2166/wst.2014.261	2014
Computational Network Inference for Bacterial Interactomics.	James K, Munoz-Munoz J.	mSystems	10.1128/msystems.01456-21	2022
Activation of GPR55 Ameliorates Maternal Separation-Induced Learning and Memory Deficits by Augmenting 5-HT Synthesis in the Dorsal Raphe Nucleus of Juvenile Mice.	Sun T, Du YY, Zhang YQ, Tian QQ, Li X, Yu JY, Guo YY, Liu QQ, Yang L, Wu YM, Yang Q, Zhao MG.	ACS Omega	10.1021/acsomega.3c08934	2024
Ferrihydrite-mediated methanotrophic nitrogen fixation in paddy soil under hypoxia.	Yu L, Jia R, Liu S, Li S, Zhong S, Liu G, Zeng RJ, Rensing C, Zhou S.	ISME Commun	10.1093/ismeco/ycae030	2024
Anaerobic digestion for simultaneous sewage sludge treatment and CO biomethanation: process performance and microbial ecology.	Luo G, Wang W, Angelidaki I.	Environ Sci Technol	10.1021/es401018d	2013
Machine learning-guided evolution of pyrrolysyl-tRNA synthetase for improved incorporation efficiency of diverse noncanonical amino acids.	Zhang Q, Jiang L, Niu Y, Li Y, Chen W, Cheng J, Ding H, Chen B, Liu K, Cao J, Wang J, Ye S, Yang L, Wu J, Xu G, Lin J, Yu H.	Nat Commun	10.1038/s41467-025-61952-2	2025
Origin, Diversity, and Multiple Roles of Enzymes with Metallo-beta-Lactamase Fold from Different Organisms.	Diene SM, Pontarotti P, Azza S, Armstrong N, Pinault L, Chabriere E, Colson P, Rolain JM, Raoult D.	Cells	10.3390/cells12131752	2023
Expression of divergent methyl/alkyl coenzyme M reductases from uncultured archaea.	Shao N, Fan Y, Chou CW, Yavari S, Williams RV, Amster IJ, Brown SM, Drake IJ, Duin EC, Whitman WB, Liu Y.	Commun Biol	10.1038/s42003-022-04057-6	2022
Efficient Site-Specific Prokaryotic and Eukaryotic Incorporation of Halotyrosine Amino Acids into Proteins.	Jang HS, Gu X, Cooley RB, Porter JJ, Henson RL, Willi T, DiDonato JA, Hazen SL, Mehl RA.	ACS Chem Biol	10.1021/acschembio.9b01026	2020
Methanogenic Archaea Can Produce Methane in Deliquescence-Driven Mars Analog Environments.	Maus D, Heinz J, Schirmack J, Airo A, Kounaves SP, Wagner D, Schulze-Makuch D.	Sci Rep	10.1038/s41598-019-56267-4	2020
An Expanded Genetic Code Enables Trimethylamine Metabolism in Human Gut Bacteria.	Kivenson V, Giovannoni SJ.	mSystems	10.1128/msystems.00413-20	2020
Methyl-Based Methanogenesis: an Ecological and Genomic Review.	Bueno de Mesquita CP, Wu D, Tringe SG.	Microbiol Mol Biol Rev	10.1128/mmbr.00024-22	2023
A new family of uncultivated bacteria involved in methanogenesis from the ubiquitous osmolyte glycine betaine in coastal saltmarsh sediments.	Jones HJ, Krober E, Stephenson J, Mausz MA, Jameson E, Millard A, Purdy KJ, Chen Y.	Microbiome	10.1186/s40168-019-0732-4	2019
Inhibitory Effect of Coumarin on Syntrophic Fatty Acid-Oxidizing and Methanogenic Cultures and Biogas Reactor Microbiomes.	Popp D, Plugge CM, Kleinsteuber S, Harms H, Strauber H.	Appl Environ Microbiol	10.1128/aem.00438-17	2017
Sodium ion translocation and ATP synthesis in methanogens.	Schlegel K, Muller V.	Methods Enzymol	10.1016/b978-0-12-385112-3.00012-3	2011
Identification of two archaeal GDGT lipid-modifying proteins reveals diverse microbes capable of GMGT biosynthesis and modification.	Garcia AA, Chadwick GL, Liu XL, Welander PV.	Proc Natl Acad Sci U S A	10.1073/pnas.2318761121	2024
Adenylyl Cyclase (AC) Mediates the Antidepressant-Like Effects of Tropisetron on a Mouse Model of Maternal Separation Stress.	Hosseinzadeh A, Boroujeni SN, Saghaei E, Loriooini Z, Dehkordi SH, Balali-Dehkordi S, Rahimi-Madiseh M, Amini-Khoei H.	Depress Res Treat	10.1155/2021/5586119	2021
Thg1 family 3'-5' RNA polymerases as tools for targeted RNA synthesis.	Jayasinghe MI, Patel KJ, Jackman JE.	RNA	10.1261/rna.080156.124	2024
Physiological Evidence for Isopotential Tunneling in the Electron Transport Chain of Methane-Producing Archaea.	Duszenko N, Buan NR.	Appl Environ Microbiol	10.1128/aem.00950-17	2017
Engineering mutually orthogonal PylRS/tRNA pairs for dual encoding of functional histidine analogues.	Taylor CJ, Hardy FJ, Burke AJ, Bednar RM, Mehl RA, Green AP, Lovelock SL.	Protein Sci	10.1002/pro.4640	2023
Genetic methods for methanosarcina species.	Buan N, Kulkarni G, Metcalf W.	Methods Enzymol	10.1016/b978-0-12-385112-3.00002-0	2011
Biological methane production and accumulation under sulfate-rich conditions at Cape Lookout Bight, NC.	Coon GR, Duesing PD, Paul R, Baily JA, Lloyd KG.	Front Microbiol	10.3389/fmicb.2023.1268361	2023
Impact of temperature, microwave radiation and organic loading rate on methanogenic community and biogas production during fermentation of dairy wastewater.	Zielinska M, Cydzik-Kwiatkowska A, Zielinski M, Debowski M.	Bioresour Technol	10.1016/j.biortech.2012.11.093	2013
Global transcriptomics analysis of the Desulfovibrio vulgaris change from syntrophic growth with Methanosarcina barkeri to sulfidogenic metabolism.	Plugge CM, Scholten JCM, Culley DE, Nie L, Brockman FJ, Zhang W.	Microbiology (Reading)	10.1099/mic.0.038539-0	2010
Pretreatments of Broussonetia papyrifera: in vitro assessment on gas and methane production, fermentation characteristic, and methanogenic archaea profile.	Dong L, Gao Y, Jing X, Guo H, Zhang H, Lai Q, Diao Q.	Anim Biosci	10.5713/ajas.20.0503	2022
Selective trace elements significantly enhanced methane production in coal bed methane systems by stimulating microbial activity.	Chin K-J, Unal B, Sanderson M, Aboderin F, Nusslein K.	Microbiol Spectr	10.1128/spectrum.03508-23	2024
Electron Transfer in the Biogeochemical Sulfur Cycle.	Zhuang X, Wang S, Wu S.	Life (Basel)	10.3390/life14050591	2024
Phylogenetic diversity of putative nickel-containing carbon monoxide dehydrogenase-encoding prokaryotes in the human gut microbiome.	Katayama YA, Kamikawa R, Yoshida T.	Microb Genom	10.1099/mgen.0.001285	2024
Simple Porifera holobiont reveals complex interactions between the host, an archaeon, a bacterium, and a phage.	Garritano AN, Zhang Z, Jia Y, Allen MA, Hill LJ, Kuzhiumparambil U, Hinkley C, Raina JB, Peixoto RS, Thomas T.	ISME J	10.1093/ismejo/wrae197	2024
[Effect of a corrinoid on Methanosarcina barkeri DNA synthesis].	Ryzhkova EP, Briukhanov AL.	Mikrobiologiia	10.1134/s0026261709010019	2009
Expanding the Zebrafish Genetic Code through Site-Specific Introduction of Azido-lysine, Bicyclononyne-lysine, and Diazirine-lysine.	Syed J, Palani S, Clarke ST, Asad Z, Bottrill AR, Jones AME, Sampath K, Balasubramanian MK.	Int J Mol Sci	10.3390/ijms20102577	2019
Identification of key steps in the evolution of anaerobic methanotrophy in Candidatus Methanovorans (ANME-3) archaea.	Woods PH, Speth DR, Laso-Perez R, Utter DR, Ruff SE, Orphan VJ.	Sci Adv	10.1126/sciadv.adq5232	2025
Laboratory-scale bioaugmentation relieves acetate accumulation and stimulates methane production in stalled anaerobic digesters.	Town JR, Dumonceaux TJ.	Appl Microbiol Biotechnol	10.1007/s00253-015-7058-3	2016
Generation of Premature Termination Codon (PTC)-Harboring Pseudorabies Virus (PRV) via Genetic Code Expansion Technology.	Wang TY, Sang GJ, Wang Q, Leng CL, Tian ZJ, Peng JM, Wang SJ, Sun MX, Meng FD, Zheng H, Cai XH, Tang YD.	Viruses	10.3390/v14030572	2022
Light-independent anaerobic microbial oxidation of manganese driven by an electrosyntrophic coculture.	Huang L, Liu X, Rensing C, Yuan Y, Zhou S, Nealson KH.	ISME J	10.1038/s41396-022-01335-3	2023
Expanding the Diet for DIET: Electron Donors Supporting Direct Interspecies Electron Transfer (DIET) in Defined Co-Cultures.	Wang LY, Nevin KP, Woodard TL, Mu BZ, Lovley DR.	Front Microbiol	10.3389/fmicb.2016.00236	2016
CalDAG-GEFI acts as a guanine nucleotide exchange factor for LRRK2 to regulate LRRK2 function and neurodegeneration.	Liu Q, Huang B, Guiberson NGL, Chen S, Zhu D, Ma G, Ma XM, Crittenden JR, Yu J, Graybiel AM, Dawson TM, Dawson VL, Xiong Y.	Sci Adv	10.1126/sciadv.adn5417	2024
Minimizing the Anticodon-Recognized Loop of Methanococcus jannaschii Tyrosyl-tRNA Synthetase to Improve the Efficiency of Incorporating Noncanonical Amino Acids.	Hu Z, Liang J, Su T, Zhang D, Li H, Gao X, Yao W, Song X.	Biomolecules	10.3390/biom13040610	2023
Functional comparison of metabolic networks across species.	Ramon C, Stelling J.	Nat Commun	10.1038/s41467-023-37429-5	2023
Microbial drivers of DMSO reduction and DMS-dependent methanogenesis in saltmarsh sediments.	Tebbe DA, Gruender C, Dlugosch L, Lohmus K, Rolfes S, Konneke M, Chen Y, Engelen B, Schafer H.	ISME J	10.1038/s41396-023-01539-1	2023
Photocatalytic Material-Microorganism Hybrid System and Its Application-A Review.	Song J, Lin H, Zhao G, Huang X.	Micromachines (Basel)	10.3390/mi13060861	2022
Proteomic Analysis of Methanococcus voltae Grown in the Presence of Mineral and Nonmineral Sources of Iron and Sulfur.	Steward KF, Payne D, Kincannon W, Johnson C, Lensing M, Fausset H, Nemeth B, Shepard EM, Broderick WE, Broderick JB, Dubois J, Bothner B.	Microbiol Spectr	10.1128/spectrum.01893-22	2022
Magnetite Alters the Metabolic Interaction between Methanogens and Sulfate-Reducing Bacteria.	Giangeri G, Tsapekos P, Gaspari M, Ghofrani-Isfahani P, Hong Lin MKT, Treu L, Kougias P, Campanaro S, Angelidaki I.	Environ Sci Technol	10.1021/acs.est.3c05948	2023
Dual-mode harvest solar energy for photothermal Cu_2-xSe biomineralization and seawater desalination by biotic-abiotic hybrid.	Gong SL, Tian Y, Sheng GP, Tian LJ.	Nat Commun	10.1038/s41467-024-48660-z	2024
Methanogenesis in the sediments of Rio Tinto, an extreme acidic river.	Sanz JL, Rodriguez N, Diaz EE, Amils R.	Environ Microbiol	10.1111/j.1462-2920.2011.02504.x	2011
COD removal from expanded granular sludge bed effluent using a moving bed biofilm reactor and their microbial community analysis	Fu B, Liao X, Liang R, Ding L, Xu K, Ren H.	World J Microbiol Biotechnol	10.1007/s11274-010-0534-0	2011
Dual expression of CCA-adding enzyme and RNase T in Escherichia coli generates a distinct cca growth phenotype with diverse applications.	Wellner K, Pohler MT, Betat H, Morl M.	Nucleic Acids Res	10.1093/nar/gkz133	2019
Microbial carbon use efficiency predicted from genome-scale metabolic models.	Saifuddin M, Bhatnagar JM, Segre D, Finzi AC.	Nat Commun	10.1038/s41467-019-11488-z	2019
Molecular characterization of microorganisms with industrial potential for methane production in sludge from Kangemi sewage treatment plant, Nyeri county-Kenya.	Kimisto AK, Muia AW, Ong'ondo GO, Ndung'u KC.	Heliyon	10.1016/j.heliyon.2023.e15715	2023
DsrMKJOP is the terminal reductase complex in anaerobic sulfate respiration.	Barbosa ACC, Venceslau SS, Pereira IAC.	Proc Natl Acad Sci U S A	10.1073/pnas.2313650121	2024
Expression of V-nitrogenase and Fe-nitrogenase in Methanosarcina acetivorans is controlled by molybdenum, fixed nitrogen, and the expression of Mo-nitrogenase.	Chanderban M, Hill CA, Dhamad AE, Lessner DJ.	Appl Environ Microbiol	10.1128/aem.01033-23	2023
Genetic encoding and labeling of aliphatic azides and alkynes in recombinant proteins via a pyrrolysyl-tRNA Synthetase/tRNA(CUA) pair and click chemistry.	Nguyen DP, Lusic H, Neumann H, Kapadnis PB, Deiters A, Chin JW.	J Am Chem Soc	10.1021/ja900553w	2009
Diverse protein manipulations with genetically encoded glutamic acid benzyl ester.	Yang X, Miao H, Xiao R, Wang L, Zhao Y, Wu Q, Ji Y, Du J, Qin H, Xuan W.	Chem Sci	10.1039/d1sc01882e	2021
Methanogen diversity in the rumen of Indian Surti buffalo (Bubalus bubalis), assessed by 16S rDNA analysis.	Singh KM, Tripathi AK, Pandya PR, Parnerkar S, Rank DN, Kothari RK, Joshi CG.	Res Vet Sci	10.1016/j.rvsc.2011.03.022	2012
Discovery and Genetic Code Expansion of a Polyethylene Terephthalate (PET) Hydrolase from the Human Saliva Metagenome for the Degradation and Bio-Functionalization of PET.	Eiamthong B, Meesawat P, Wongsatit T, Jitdee J, Sangsri R, Patchsung M, Aphicho K, Suraritdechachai S, Huguenin-Dezot N, Tang S, Suginta W, Paosawatyanyong B, Babu MM, Chin JW, Pakotiprapha D, Bhanthumnavin W, Uttamapinant C.	Angew Chem Int Ed Engl	10.1002/anie.202203061	2022
Growth rate-dependent coordination of catabolism and anabolism in the archaeon Methanococcus maripaludis under phosphate limitation.	Gu W, Muller AL, Deutzmann JS, Williamson JR, Spormann AM.	ISME J	10.1038/s41396-022-01278-9	2022
Destabilase-lysozyme of medicinal leech. Multifunctionality of recombinant protein.	Zavalova LL, Lazarev VN, Levitsky SA, Yudina TG, Baskova IP.	Biochemistry (Mosc)	10.1134/s0006297910090129	2010
Grazing exclusion alters soil methane flux and methanotrophic and methanogenic communities in alpine meadows on the Qinghai-Tibet Plateau.	Wang S, Chen X, Li W, Gong W, Wang Z, Cao W.	Front Microbiol	10.3389/fmicb.2023.1293720	2023
Genetic, Genomic, and Transcriptomic Studies of Pyruvate Metabolism in Methanosarcina barkeri Fusaro.	Lopez Munoz MM, Schonheit P, Metcalf WW.	J Bacteriol	10.1128/jb.00551-15	2015
Novel Methanobacterium Strain Induces Severe Corrosion by Retrieving Electrons from Fe⁰ under a Freshwater Environment.	Hirano SI, Ihara S, Wakai S, Dotsuta Y, Otani K, Kitagaki T, Ueno F, Okamoto A.	Microorganisms	10.3390/microorganisms10020270	2022
Structural and mechanistic basis of the central energy-converting methyltransferase complex of methanogenesis.	Aziz I, Kayastha K, Kaltwasser S, Vonck J, Welsch S, Murphy BJ, Kahnt J, Wu D, Wagner T, Shima S, Ermler U.	Proc Natl Acad Sci U S A	10.1073/pnas.2315568121	2024
Response of soil microbial compositional and functional heterogeneity to grazing exclusion in alpine shrub and meadows in the Qinghai-Tibet Plateau.	Wang S, Abalori TA, Wang W, Deng X, Liu W, Wang J, Cao W.	Front Microbiol	10.3389/fmicb.2022.1038805	2022
An Unnatural Amino Acid-Regulated Growth Controller Based on Informational Disturbance.	Kato Y.	Life (Basel)	10.3390/life11090920	2021
Biome-specific distribution of Ni-containing carbon monoxide dehydrogenases.	Inoue M, Omae K, Nakamoto I, Kamikawa R, Yoshida T, Sako Y.	Extremophiles	10.1007/s00792-022-01259-y	2022
Substrate Profiling of Mitochondrial Caseinolytic Protease P via a Site-Specific Photocrosslinking Approach.	Nguyen TA, Gronauer TF, Nast-Kolb T, Sieber SA, Lang K.	Angew Chem Int Ed Engl	10.1002/anie.202111085	2022
Comparing flux balance analysis to network expansion: producibility, sustainability and the scope of compounds.	Kruse K, Ebenhoh O.	Genome Inform	10.1142/9781848163003_0008	2008
Ultrafast Bioorthogonal Spin-Labeling and Distance Measurements in Mammalian Cells Using Small, Genetically Encoded Tetrazine Amino Acids.	Jana S, Evans EGB, Jang HS, Zhang S, Zhang H, Rajca A, Gordon SE, Zagotta WN, Stoll S, Mehl RA.	J Am Chem Soc	10.1021/jacs.3c00967	2023
Expanding the phylogenetic distribution of cytochrome b-containing methanogenic archaea sheds light on the evolution of methanogenesis.	Ou YF, Dong HP, Dong HP, McIlroy SJ, Crowe SA, Hallam SJ, Han P, Kallmeyer J, Simister RL, Vuillemin A, Leu AO, Liu Z, Zheng YL, Sun QL, Liu M, Tyson GW, Hou LJ.	ISME J	10.1038/s41396-022-01281-0	2022
Flux networks in metabolic graphs.	Warren PB, Queiros SM, Jones JL.	Phys Biol	10.1088/1478-3975/6/4/046006	2009
Carbon Monoxide Production during Bio-Waste Composting under Different Temperature and Aeration Regimes.	Sobieraj K, Stegenta-Dabrowska S, Zafiu C, Binner E, Bialowiec A.	Materials (Basel)	10.3390/ma16134551	2023
A Genome-Scale Metabolic Model of Methanoperedens nitroreducens: Assessing Bioenergetics and Thermodynamic Feasibility.	He B, Cai C, McCubbin T, Muriel JC, Sonnenschein N, Hu S, Yuan Z, Marcellin E.	Metabolites	10.3390/metabo12040314	2022
Characterization of variations within the rumen metaproteome of Holstein dairy cattle relative to morning feed offering.	Honan MC, Greenwood SL.	Sci Rep	10.1038/s41598-020-59974-5	2020
Genetic Code Expansion in Animals.	Brown W, Liu J, Deiters A.	ACS Chem Biol	10.1021/acschembio.8b00520	2018
Expression of a bacterial catalase in a strictly anaerobic methanogen significantly increases tolerance to hydrogen peroxide but not oxygen.	Jennings ME, Schaff CW, Horne AJ, Lessner FH, Lessner DJ.	Microbiology (Reading)	10.1099/mic.0.070763-0	2014
Functional Group Distribution of the Carrier Surface Influences Adhesion of Methanothermobacter thermautotrophicus.	Umetsu M, Sunouchi T, Fukuda Y, Takahashi H, Tada C.	Archaea	10.1155/2020/9432803	2020
Recognition between tRNASer and archaeal seryl-tRNA synthetases monitored by suppression of bacterial amber mutations.	Lesjak S, Weygand-Durasevic I.	FEMS Microbiol Lett	10.1111/j.1574-6968.2009.01560.x	2009
Structural flexibility of the methanogenic-type seryl-tRNA synthetase active site and its implication for specific substrate recognition.	Bilokapic S, Rokov Plavec J, Ban N, Weygand-Durasevic I.	FEBS J	10.1111/j.1742-4658.2008.06423.x	2008
Potential metabolic and genetic interaction among viruses, methanogen and methanotrophic archaea, and their syntrophic partners.	Wang L, Wang Y, Huang X, Ma R, Li J, Wang F, Jiao N, Zhang R.	ISME Commun	10.1038/s43705-022-00135-2	2022
Absence of oxygen effect on microbial structure and methane production during drying and rewetting events.	Liu T, Li X, Yekta SS, Bjorn A, Mu BZ, Masuda LSM, Schnurer A, Enrich-Prast A.	Sci Rep	10.1038/s41598-022-20448-5	2022
Enrichment of rare methanogenic Archaea shows their important ecological role in natural high-CO₂ terrestrial subsurface environments.	Jia Z, Lipus D, Burckhardt O, Bussert R, Sondermann M, Bartholomaus A, Wagner D, Kallmeyer J.	Front Microbiol	10.3389/fmicb.2023.1105259	2023
A Ferredoxin Disulfide Reductase Delivers Electrons to the Methanosarcina barkeri Class III Ribonucleotide Reductase.	Wei Y, Li B, Prakash D, Ferry JG, Elliott SJ, Stubbe J.	Biochemistry	10.1021/acs.biochem.5b01092	2015
Identification of syntrophic acetate-oxidizing bacteria in anaerobic digesters by combined protein-based stable isotope probing and metagenomics.	Mosbaek F, Kjeldal H, Mulat DG, Albertsen M, Ward AJ, Feilberg A, Nielsen JL.	ISME J	10.1038/ismej.2016.39	2016
The alternative route to heme in the methanogenic archaeon Methanosarcina barkeri.	Kuhner M, Haufschildt K, Neumann A, Storbeck S, Streif J, Layer G.	Archaea	10.1155/2014/327637	2014
Methanogenic archaea use a bacteria-like methyltransferase system to demethoxylate aromatic compounds.	Kurth JM, Nobu MK, Tamaki H, de Jonge N, Berger S, Jetten MSM, Yamamoto K, Mayumi D, Sakata S, Bai L, Cheng L, Nielsen JL, Kamagata Y, Wagner T, Welte CU.	ISME J	10.1038/s41396-021-01025-6	2021
Ancestral archaea expanded the genetic code with pyrrolysine.	Guo LT, Amikura K, Jiang HK, Mukai T, Fu X, Wang YS, O'Donoghue P, Soll D, Tharp JM.	J Biol Chem	10.1016/j.jbc.2022.102521	2022
MecE, MecB, and MecC proteins orchestrate methyl group transfer during dichloromethane fermentation.	Soder-Walz JM, Deobald D, Vicent T, Marco-Urrea E, Adrian L.	Appl Environ Microbiol	10.1128/aem.00978-24	2024
The catalase and superoxide dismutase genes are transcriptionally up-regulated upon oxidative stress in the strictly anaerobic archaeon Methanosarcina barkeri.	Brioukhanov AL, Netrusov AI, Eggen RIL.	Microbiology (Reading)	10.1099/mic.0.28542-0	2006
Evolution of the syntrophic interaction between Desulfovibrio vulgaris and Methanosarcina barkeri: Involvement of an ancient horizontal gene transfer.	Scholten JC, Culley DE, Brockman FJ, Wu G, Zhang W.	Biochem Biophys Res Commun	10.1016/j.bbrc.2006.10.164	2007
A widespread group of large plasmids in methanotrophic Methanoperedens archaea.	Schoelmerich MC, Ouboter HT, Sachdeva R, Penev PI, Amano Y, West-Roberts J, Welte CU, Banfield JF.	Nat Commun	10.1038/s41467-022-34588-9	2022
Species-resolved, single-cell respiration rates reveal dominance of sulfate reduction in a deep continental subsurface ecosystem.	Lindsay MR, D'Angelo T, Munson-McGee JH, Saidi-Mehrabad A, Devlin M, McGonigle J, Goodell E, Herring M, Lubelczyk LC, Mascena C, Brown JM, Gavelis G, Liu J, Yousavich DJ, Hamilton-Brehm SD, Hedlund BP, Lang S, Treude T, Poulton NJ, Stepanauskas R, Moser DP, Emerson D, Orcutt BN.	Proc Natl Acad Sci U S A	10.1073/pnas.2309636121	2024
Electron Transfer to Nitrogenase in Different Genomic and Metabolic Backgrounds.	Poudel S, Colman DR, Fixen KR, Ledbetter RN, Zheng Y, Pence N, Seefeldt LC, Peters JW, Harwood CS, Boyd ES.	J Bacteriol	10.1128/jb.00757-17	2018
- Invited Review - Understanding the functionality of the rumen microbiota: searching for better opportunities for rumen microbial manipulation.	Qi W, Xue MY, Jia MH, Zhang S, Yan Q, Sun HZ.	Anim Biosci	10.5713/ab.23.0308	2024
Augmenting Biogas Process Modeling by Resolving Intracellular Metabolic Activity.	Weinrich S, Koch S, Bonk F, Popp D, Benndorf D, Klamt S, Centler F.	Front Microbiol	10.3389/fmicb.2019.01095	2019
DNA microarray analysis of anaerobic Methanosarcina barkeri reveals responses to heat shock and air exposure.	Zhang W, Culley DE, Nie L, Brockman FJ.	J Ind Microbiol Biotechnol	10.1007/s10295-006-0114-3	2006
Evaluation of methanogenic treatment of TMAH (tetra-methyl ammonium hydroxide) in a full-scale TFT-LCD wastewater treatment process.	Hu TH, Whang LM, Lei CN, Chen CF, Chiang TY, Lin LB, Chen HW, Liu PW, Cheng SS.	Water Sci Technol	10.2166/wst.2010.284	2010
Effect of microwave irradiated Methanosarcina barkeri DSM-804 on biomethanation.	Banik S, Bandyopadhyay S, Ganguly S, Dan D.	Bioresour Technol	10.1016/j.biortech.2005.04.032	2006
Activity-based, genome-resolved metagenomics uncovers key populations and pathways involved in subsurface conversions of coal to methane.	McKay LJ, Smith HJ, Barnhart EP, Schweitzer HD, Malmstrom RR, Goudeau D, Fields MW.	ISME J	10.1038/s41396-021-01139-x	2022
Optimization of RNA isolation from the archaebacterium Methanosarcina barkeri and validation for oligonucleotide microarray analysis.	Culley DE, Kovacik WP, Brockman FJ, Zhang W.	J Microbiol Methods	10.1016/j.mimet.2006.02.014	2006
A novel viral vaccine platform based on engineered transfer RNA.	Wang TY, Meng FD, Sang GJ, Zhang HL, Tian ZJ, Zheng H, Cai XH, Tang YD.	Emerg Microbes Infect	10.1080/22221751.2022.2157339	2023
Editorial: Wired for Life.	Rotaru AE, Shrestha PM.	Front Microbiol	10.3389/fmicb.2016.00662	2016
Cross-Feedings, Competition, and Positive and Negative Synergies in a Four-Species Synthetic Community for Anaerobic Degradation of Cellulose to Methane.	Wang D, Hunt KA, Candry P, Tao X, Wofford NQ, Zhou J, McInerney MJ, Stahl DA, Tanner RS, Zhou A, Winkler M, Pan C.	mBio	10.1128/mbio.03189-22	2023
Genetically encoded chemical crosslinking of carbohydrate.	Li S, Wang N, Yu B, Sun W, Wang L.	Nat Chem	10.1038/s41557-022-01059-z	2023
Genetic code expansion in mammalian cells: A plasmid system comparison.	Zhou W, Wesalo JS, Liu J, Deiters A.	Bioorg Med Chem	10.1016/j.bmc.2020.115772	2020
gapseq: informed prediction of bacterial metabolic pathways and reconstruction of accurate metabolic models.	Zimmermann J, Kaleta C, Waschina S.	Genome Biol	10.1186/s13059-021-02295-1	2021
Time-shifted expression of acetoclastic and methylotrophic methanogenesis by a single Methanosarcina genomospecies predominates the methanogen dynamics in Philippine rice field soil.	Li X, Bei Q, Rabiei Nematabad M, Peng J, Liesack W.	Microbiome	10.1186/s40168-023-01739-z	2024
Encoding multiple unnatural amino acids via evolution of a quadruplet-decoding ribosome.	Neumann H, Wang K, Davis L, Garcia-Alai M, Chin JW.	Nature	10.1038/nature08817	2010
The effects of temperature shock on the treatment of high-concentration organic wastewater by an Fe⁰/GO-anaerobic system.	Wang X, Lin Y, Wang L, Yang D, Lan H.	RSC Adv	10.1039/d1ra04773f	2021
Formaldehyde activating enzyme (Fae) and hexulose-6-phosphate synthase (Hps) in Methanosarcina barkeri: a possible function in ribose-5-phosphate biosynthesis.	Goenrich M, Thauer RK, Yurimoto H, Kato N.	Arch Microbiol	10.1007/s00203-005-0008-1	2005
The Complete Genome of a Novel Typical Species Thiocapsa bogorovii and Analysis of Its Central Metabolic Pathways.	Petushkova E, Khasimov M, Mayorova E, Delegan Y, Frantsuzova E, Bogun A, Galkina E, Tsygankov A.	Microorganisms	10.3390/microorganisms12020391	2024
Genetic Encoding and Enzymatic Deprotection of a Latent Thiol Side Chain to Enable New Protein Bioconjugation Applications.	Reille-Seroussi M, Meyer-Ahrens P, Aust A, Feldberg AL, Mootz HD.	Angew Chem Int Ed Engl	10.1002/anie.202102343	2021
Survival of methanogens during desiccation: implications for life on Mars.	Kendrick MG, Kral TA.	Astrobiology	10.1089/ast.2006.6.546	2006
Assignment of the [4Fe-4S] clusters of Ech hydrogenase from Methanosarcina barkeri to individual subunits via the characterization of site-directed mutants.	Forzi L, Koch J, Guss AM, Radosevich CG, Metcalf WW, Hedderich R.	FEBS J	10.1111/j.1742-4658.2005.04889.x	2005
Influence of dietary carbohydrate profile on the dairy cow rumen meta-proteome.	Mulakala BK, Smith KM, Snider MA, Ayers A, Honan MC, Greenwood SL.	J Dairy Sci	10.3168/jds.2022-21812	2022
Genetic Incorporation of Two Mutually Orthogonal Bioorthogonal Amino Acids That Enable Efficient Protein Dual-Labeling in Cells.	Bednar RM, Jana S, Kuppa S, Franklin R, Beckman J, Antony E, Cooley RB, Mehl RA.	ACS Chem Biol	10.1021/acschembio.1c00649	2021
A Novel Archaeal Lineage in Boiling Hot Springs around Oyasukyo Gorge (Akita, Japan).	Asamatsu K, Yoshitake K, Saito M, Prasitwuttisak W, Ishibashi JI, Tsutsumi A, Mustapha NA, Maeda T, Yanagawa K.	Microbes Environ	10.1264/jsme2.me21048	2021
Efficient Amber Suppression via Ribosomal Skipping for In Situ Synthesis of Photoconditional Nanobodies.	Joest EF, Winter C, Wesalo JS, Deiters A, Tampe R.	ACS Synth Biol	10.1021/acssynbio.1c00471	2022
Comparative Metagenomic Analysis of Electrogenic Microbial Communities in Differentially Inoculated Swine Wastewater-Fed Microbial Fuel Cells.	Khilyas IV, Sorokin AA, Kiseleva L, Simpson DJW, Fedorovich V, Sharipova MR, Kainuma M, Cohen MF, Goryanin I.	Scientifica (Cairo)	10.1155/2017/7616359	2017
Stimulatory Effect of Magnetite Nanoparticles on a Highly Enriched Butyrate-Oxidizing Consortium.	Fu L, Song T, Zhang W, Zhang J, Lu Y.	Front Microbiol	10.3389/fmicb.2018.01480	2018
Isolation and characterization of fast-growing green snow bacteria from coastal East Antarctica.	Smirnova M, Miamin U, Kohler A, Valentovich L, Akhremchuk A, Sidarenka A, Dolgikh A, Shapaval V.	Microbiologyopen	10.1002/mbo3.1152	2021
Exploring Structure and Function of Redox Intermediates in [NiFe]-Hydrogenases by an Advanced Experimental Approach for Solvated, Lyophilized and Crystallized Metalloenzymes.	Lorent C, Pelmenschikov V, Frielingsdorf S, Schoknecht J, Caserta G, Yoda Y, Wang H, Tamasaku K, Lenz O, Cramer SP, Horch M, Lauterbach L, Zebger I.	Angew Chem Int Ed Engl	10.1002/anie.202100451	2021
Hydrogenotrophs-Based Biological Biogas Upgrading Technologies.	Antukh T, Lee I, Joo S, Kim H.	Front Bioeng Biotechnol	10.3389/fbioe.2022.833482	2022
CO2 reduction to the level of formylmethanofuran in Methanosarcina barkeri is non-energy driven when CO is the electron donor.	Stojanowic A, Hedderich R.	FEMS Microbiol Lett	10.1016/j.femsle.2004.04.028	2004
Differential modes of transfer RNASer recognition in Methanosarcina barkeri.	Korencic D, Polycarpo C, Weygand-Durasevic I, Soll D.	J Biol Chem	10.1074/jbc.m408753200	2004
Light-guided intrabodies for on-demand in situ target recognition in human cells.	Joest EF, Winter C, Wesalo JS, Deiters A, Tampe R.	Chem Sci	10.1039/d1sc01331a	2021
Metatranscriptomic Evidence for Magnetite Nanoparticle-Stimulated Acetoclastic Methanogenesis under Continuous Agitation.	Inaba R, Nagoya M, Kouzuma A, Watanabe K.	Appl Environ Microbiol	10.1128/aem.01733-19	2019
Thermodynamic modelling of synthetic communities predicts minimum free energy requirements for sulfate reduction and methanogenesis.	Delattre H, Chen J, Wade MJ, Soyer OS.	J R Soc Interface	10.1098/rsif.2020.0053	2020
The hidden simplicity of metabolic networks is revealed by multireaction dependencies.	Kuken A, Langary D, Nikoloski Z.	Sci Adv	10.1126/sciadv.abl6962	2022
Two Distinct Thermodynamic Gradients for Cellular Metalation of Vitamin B₁₂.	Young TR, Deery E, Foster AW, Martini MA, Osman D, Warren MJ, Robinson NJ.	JACS Au	10.1021/jacsau.3c00119	2023
Inhibition of methanogenesis by interaction of aluminium ion with co-factor, F-420, in Methanosarcina barkeri.	Chattopadhyay BD, Thakur AR.	Indian J Exp Biol		2003
Improvement of Direct Interspecies Electron Transfer via Adding Conductive Materials in Anaerobic Digestion: Mechanisms, Performances, and Challenges.	Chen L, Fang W, Chang J, Liang J, Zhang P, Zhang G.	Front Microbiol	10.3389/fmicb.2022.860749	2022
Energy conservation involving 2 respiratory circuits.	Schoelmerich MC, Katsyv A, Donig J, Hackmann TJ, Muller V.	Proc Natl Acad Sci U S A	10.1073/pnas.1914939117	2020
Molecular characterization of polychlorinated biphenyl-dechlorinating populations in contaminated sediments.	Oh KH, Ostrofsky EB, Cho YC.	J Microbiol	10.1007/s12275-007-0214-4	2008
Ribosomal intergenic spacer analysis as a tool for monitoring methanogenic Archaea changes in an anaerobic digester.	Ciesielski S, Bulkowska K, Dabrowska D, Kaczmarczyk D, Kowal P, Mozejko J.	Curr Microbiol	10.1007/s00284-013-0353-2	2013
Culture adaptation for enhanced biogas production from birch wood applying stable carbon isotope analysis to monitor changes in the microbial community.	Hashemi S, Solli L, Lien KM, Lamb JJ, Horn SJ.	Biotechnol Biofuels Bioprod	10.1186/s13068-023-02328-w	2023
The structure of the bacterial and archaeal community in a biogas digester as revealed by denaturing gradient gel electrophoresis and 16S rDNA sequencing analysis.	Liu FH, Wang SB, Zhang JS, Zhang J, Yan X, Zhou HK, Zhao GP, Zhou ZH.	J Appl Microbiol	10.1111/j.1365-2672.2008.04064.x	2009
Cuticular competing endogenous RNAs regulate insecticide penetration and resistance in a major agricultural pest.	Meng LW, Yuan GR, Chen ML, Zheng LS, Dou W, Peng Y, Bai WJ, Li ZY, Vontas J, Wang JJ.	BMC Biol	10.1186/s12915-023-01694-z	2023
Stimulating Effect of Trichococcus flocculiformis on a Coculture of Syntrophomonas wolfei and Methanospirillum hungatei.	Doloman A, Boeren S, Miller CD, Sousa DZ.	Appl Environ Microbiol	10.1128/aem.00391-22	2022
Presence of a human Hyaluronan binding protein 1 (HABP1) pseudogene-like sequence in Methanosarcina barkeri suggests its linkage in evolution.	Sengupta A, Ghosh I, Mallick J, Thakur AR, Datta K.	DNA Cell Biol	10.1089/104454904323090930	2004
Biogenic formation of amorphous carbon by anaerobic methanotrophs and select methanogens.	Allen KD, Wegener G, Matthew Sublett D, Bodnar RJ, Feng X, Wendt J, White RH.	Sci Adv	10.1126/sciadv.abg9739	2021
Expanding the genetic code of the human hematopoietic system.	Shao S, Koh M, Schultz PG.	Proc Natl Acad Sci U S A	10.1073/pnas.1914408117	2020
Direct inhibition of methanogenesis by ferric iron.	Bodegom PM, Scholten JC, Stams AJ.	FEMS Microbiol Ecol	10.1016/j.femsec.2004.03.017	2004
Desiccation as a long-term survival mechanism for the archaeon Methanosarcina barkeri.	Anderson KL, Apolinario EE, Sowers KR.	Appl Environ Microbiol	10.1128/aem.06964-11	2012
BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities.	Bauer E, Zimmermann J, Baldini F, Thiele I, Kaleta C.	PLoS Comput Biol	10.1371/journal.pcbi.1005544	2017
Application of metaproteomic analysis for studying extracellular polymeric substances (EPS) in activated sludge flocs and their fate in sludge digestion.	Park C, Helm RF.	Water Sci Technol	10.2166/wst.2008.620	2008
A non-canonical nucleophile unlocks a new mechanistic pathway in a designed enzyme.	Hutton AE, Foster J, Crawshaw R, Hardy FJ, Johannissen LO, Lister TM, Gerard EF, Birch-Price Z, Obexer R, Hay S, Green AP.	Nat Commun	10.1038/s41467-024-46123-z	2024
Does Addition of Phosphate and Ammonium Nutrients Affect Microbial Activity in Froth Treatment Affected Tailings?	Ramsay JA, de Lima E Silva MR, Tawadrous MAR, Ramsay BA.	Microorganisms	10.3390/microorganisms9112224	2021
Evidence for the existence in mRNAs of a hairpin element responsible for ribosome dependent pyrrolysine insertion into proteins.	Theobald-Dietrich A, Giege R, Rudinger-Thirion J.	Biochimie	10.1016/j.biochi.2005.03.006	2005
Chimeric Interaction of Nitrogenase-Like Reductases with the MoFe Protein of Nitrogenase.	Jasper J, Ramos JV, Trncik C, Jahn D, Einsle O, Layer G, Moser J.	Chembiochem	10.1002/cbic.201900759	2020
Post-translational modifications in the active site region of methyl-coenzyme M reductase from methanogenic and methanotrophic archaea.	Kahnt J, Buchenau B, Mahlert F, Kruger M, Shima S, Thauer RK.	FEBS J	10.1111/j.1742-4658.2007.06016.x	2007
Possible involvement of NMDA receptor in the anxiolytic-like effect of caffeic acid in mice model of maternal separation stress.	Lorigooini Z, Nasiri Boroujeni S, Balali-Dehkordi S, Ebrahimi L, Bijad E, Rahimi-Madiseh M, Amini-Khoei H.	Heliyon	10.1016/j.heliyon.2020.e04833	2020
Anaerobic oxidation of methane coupled with extracellular electron transfer to electrodes.	Gao Y, Lee J, Neufeld JD, Park J, Rittmann BE, Lee HS.	Sci Rep	10.1038/s41598-017-05180-9	2017
Effects of nickel and cobalt on methane production and methanogen abundance and diversity in paddy soil.	Wang T, Li Z, Chen X, Long XE.	PeerJ	10.7717/peerj.6274	2019
Safety and efficacy of the Mycoplasma synoviae MS-H vaccine in turkeys.	Noormohammadi AH, Hemmatzadeh F, Whithear KG.	Avian Dis	10.1637/0005-2086(2007)51[550:saeotm]2.0.co;2	2007
Microbiome signature and diversity regulates the level of energy production under anaerobic condition.	Rahman MS, Hoque MN, Puspo JA, Islam MR, Das N, Siddique MA, Hossain MA, Sultana M.	Sci Rep	10.1038/s41598-021-99104-3	2021
Genetically Directed Production of Recombinant, Isosteric and Nonhydrolysable Ubiquitin Conjugates.	Stanley M, Virdee S.	Chembiochem	10.1002/cbic.201600138	2016
Synergistic Effects of 3-Nitrooxypropanol with Fumarate in the Regulation of Propionate Formation and Methanogenesis in Dairy Cows In Vitro.	Liu Z, Wang K, Nan X, Cai M, Yang L, Xiong B, Zhao Y.	Appl Environ Microbiol	10.1128/aem.01908-21	2022
Subtractive hybridization and random arbitrarily primed PCR analyses of a benzoate-assimilating bacterium, Desulfotignum balticum.	Habe H, Kobuna A, Hosoda A, Kouzuma A, Yamane H, Nojiri H, Omori T, Watanabe K.	Appl Microbiol Biotechnol	10.1007/s00253-008-1414-5	2008
Crystallographic and mutational studies of seryl-tRNA synthetase from the archaeon Pyrococcus horikoshii.	Itoh Y, Sekine S, Kuroishi C, Terada T, Shirouzu M, Kuramitsu S, Yokoyama S.	RNA Biol	10.4161/rna.5.3.6876	2008
Pathogen Metagenomics Reveals Distinct Lung Microbiota Signatures Between Bacteriologically Confirmed and Negative Tuberculosis Patients.	Ding L, Liu Y, Wu X, Wu M, Luo X, Ouyang H, Xia J, Liu X, Ding T.	Front Cell Infect Microbiol	10.3389/fcimb.2021.708827	2021
Tetrahydrofolate-specific enzymes in Methanosarcina barkeri and growth dependence of this methanogenic archaeon on folic acid or p-aminobenzoic acid.	Buchenau B, Thauer RK.	Arch Microbiol	10.1007/s00203-004-0714-0	2004
Regulation of IL-24/IL-20R2 complex formation using photocaged tyrosines and UV light.	Pham PN, Zahradnik J, Kolarova L, Schneider B, Fuertes G.	Front Mol Biosci	10.3389/fmolb.2023.1214235	2023
Lysine-acetylation as a fundamental regulator of Ran function: Implications for signaling of proteins of the Ras-superfamily.	Knyphausen P, Kuhlmann N, de Boor S, Lammers M.	Small GTPases	10.1080/21541248.2015.1103399	2015
Effect of heavy ion irradiation on DNA DSB repair in Methanosarcina barkeri.	Raychaudhuri S, Karmakar P, Choudhary D, Sarma A, Thakur AR.	Anaerobe	10.1016/s1075-9964(03)00027-1	2003
[Susceptibility of archaea to the antibiotic effect of the parasporal inclusion proteins from Bacillus thuringiensis subspecies].	Iudina TG, Briukhanov AL, Netrusov AI.	Mikrobiologiia	10.1023/b:mici.0000016362.55398.82	2004
Optimizing Strategies for Bio-Based Ethanol Production Using Genome-Scale Metabolic Modeling of the Hyperthermophilic Archaeon, Pyrococcus furiosus.	Vailionis JL, Zhao W, Zhang K, Rodionov DA, Lipscomb GL, Tanwee TNN, O'Quinn HC, Bing RG, Kelly RM, Adams MWW, Zhang Y.	Appl Environ Microbiol	10.1128/aem.00563-23	2023
Visualizing an Allosteric Intermediate Using CuAAC Stabilization of an NMR Mixed Labeled Dimer.	Sapienza PJ, Currie MM, Lancaster NM, Li K, Aube J, Goldfarb D, Cloer EW, Major MB, Lee AL.	ACS Chem Biol	10.1021/acschembio.1c00617	2021
Light-activation of Cre recombinase in zebrafish embryos through genetic code expansion.	Brown W, Deiters A.	Methods Enzymol	10.1016/bs.mie.2019.04.004	2019
Identification of the major expressed S-layer and cell surface-layer-related proteins in the model methanogenic archaea: Methanosarcina barkeri Fusaro and Methanosarcina acetivorans C2A.	Rohlin L, Leon DR, Kim U, Loo JA, Ogorzalek Loo RR, Gunsalus RP.	Archaea	10.1155/2012/873589	2012
Aptamer-programmable adeno-associated viral vectors as a novel platform for cell-specific gene transfer.	Puzzo F, Zhang C, Powell Gray B, Zhang F, Sullenger BA, Kay MA.	Mol Ther Nucleic Acids	10.1016/j.omtn.2023.01.007	2023
Data of metal and microbial analyses from anaerobic co-digestion of organic and mineral wastes.	Shamurad B, Gray N, Petropoulos E, Tabraiz S, Acharya K, Quintela-Baluja M, Sallis P.	Data Brief	10.1016/j.dib.2019.103934	2019
Cellular Site-Specific Incorporation of Noncanonical Amino Acids in Synthetic Biology.	Niu W, Guo J.	Chem Rev	10.1021/acs.chemrev.3c00938	2024
The competitive success of Methanomicrococcus blatticola, a dominant methylotrophic methanogen in the cockroach hindgut, is supported by high substrate affinities and favorable thermodynamics.	Sprenger WW, Hackstein JH, Keltjens JT.	FEMS Microbiol Ecol	10.1111/j.1574-6941.2007.00287.x	2007
A functional approach to uncover the low-temperature adaptation strategies of the archaeon Methanosarcina barkeri.	Gunnigle E, McCay P, Fuszard M, Botting CH, Abram F, O'Flaherty V.	Appl Environ Microbiol	10.1128/aem.03787-12	2013
Overcoming Near-Cognate Suppression in a Release Factor 1-Deficient Host with an Improved Nitro-Tyrosine tRNA Synthetase.	Beyer JN, Hosseinzadeh P, Gottfried-Lee I, Van Fossen EM, Zhu P, Bednar RM, Karplus PA, Mehl RA, Cooley RB.	J Mol Biol	10.1016/j.jmb.2020.06.014	2020
Hydrogenotrophic Methanogenesis and Autotrophic Growth of Methanosarcina thermophila.	Lackner N, Hintersonnleitner A, Wagner AO, Illmer P.	Archaea	10.1155/2018/4712608	2018
The membrane-bound [NiFe]-hydrogenase (Ech) from Methanosarcina barkeri: unusual properties of the iron-sulphur clusters.	Kurkin S, Meuer J, Koch J, Hedderich R, Albracht SP.	Eur J Biochem	10.1046/j.1432-1033.2002.03328.x	2002
Transposase interaction with the beta sliding clamp: effects on insertion sequence proliferation and transposition rate.	Diaz-Maldonado H, Gomez MJ, Moreno-Paz M, San Martin-Uriz P, Amils R, Parro V, Lopez de Saro FJ.	Sci Rep	10.1038/srep13329	2015
In vivo contextual requirements for UAG translation as pyrrolysine.	Longstaff DG, Blight SK, Zhang L, Green-Church KB, Krzycki JA.	Mol Microbiol	10.1111/j.1365-2958.2006.05500.x	2007
Isolation, Physiological Characterization, and Antibiotic Susceptibility Testing of Fast-Growing Bacteria from the Sea-Affected Temporary Meltwater Ponds in the Thala Hills Oasis (Enderby Land, East Antarctica).	Akulava V, Miamin U, Akhremchuk K, Valentovich L, Dolgikh A, Shapaval V.	Biology (Basel)	10.3390/biology11081143	2022
Biochemical Properties of Black and Green Teas and Their Insoluble Residues as Natural Dietary Additives to Optimize In Vitro Rumen Degradability and Fermentation but Reduce Methane in Sheep.	Ramdani D, Jayanegara A, Chaudhry AS.	Animals (Basel)	10.3390/ani12030305	2022
Incorporation of Nonproteinogenic Amino Acids in Class I and II Lantibiotics.	Kakkar N, Perez JG, Liu WR, Jewett MC, van der Donk WA.	ACS Chem Biol	10.1021/acschembio.7b01024	2018
Site-Specific Protein Labeling with Fluorophores as a Tool To Monitor Protein Turnover.	Mideksa YG, Fottner M, Braus S, Weiss CAM, Nguyen TA, Meier S, Lang K, Feige MJ.	Chembiochem	10.1002/cbic.201900651	2020
Progress Toward a Semi-Synthetic Organism with an Unrestricted Expanded Genetic Alphabet.	Dien VT, Holcomb M, Feldman AW, Fischer EC, Dwyer TJ, Romesberg FE.	J Am Chem Soc	10.1021/jacs.8b08416	2018
Incorporation of Amino Acids with Long-Chain Terminal Olefins into Proteins.	Exner MP, Kohling S, Rivollier J, Gosling S, Srivastava P, Palyancheva ZI, Herdewijn P, Heck MP, Rademann J, Budisa N.	Molecules	10.3390/molecules21030287	2016
Recent Progress in Designing Nanomaterial Biohybrids for Artificial Photosynthesis.	Jeevanandham S, Ramasundaram S, Vijay N, Oh TH, Selvan ST.	Nanomaterials (Basel)	10.3390/nano15100730	2025
Development and assessment of whole-genome oligonucleotide microarrays to analyze an anaerobic microbial community and its responses to oxidative stress.	Scholten JC, Culley DE, Nie L, Munn KJ, Chow L, Brockman FJ, Zhang W.	Biochem Biophys Res Commun	10.1016/j.bbrc.2007.04.160	2007
Diversity and Metabolic Potential of the Terrestrial Mud Volcano Microbial Community with a High Abundance of Archaea Mediating the Anaerobic Oxidation of Methane.	Merkel AY, Chernyh NA, Pimenov NV, Bonch-Osmolovskaya EA, Slobodkin AI.	Life (Basel)	10.3390/life11090953	2021
Model-based driving mechanism analysis for butyric acid production in Clostridium tyrobutyricum.	Feng J, Guo X, Cai F, Fu H, Wang J.	Biotechnol Biofuels Bioprod	10.1186/s13068-022-02169-z	2022
Translational accuracy of a tethered ribosome.	Fabret C, Namy O.	Nucleic Acids Res	10.1093/nar/gkab259	2021
Characterization of biochars derived from different materials and their effects on microbial dechlorination of pentachlorophenol in a consortium.	Zhang C, Zhang N, Xiao Z, Li Z, Zhang D.	RSC Adv	10.1039/c8ra09410a	2019
A short ORF-encoded transcriptional regulator.	Koh M, Ahmad I, Ko Y, Zhang Y, Martinez TF, Diedrich JK, Chu Q, Moresco JJ, Erb MA, Saghatelian A, Schultz PG, Bollong MJ.	Proc Natl Acad Sci U S A	10.1073/pnas.2021943118	2021
Advances and Applications of Clostridium Co-culture Systems in Biotechnology.	Du Y, Zou W, Zhang K, Ye G, Yang J, Yang J.	Front Microbiol	10.3389/fmicb.2020.560223	2020
Rapid Identification of Functional Pyrrolysyl-tRNA Synthetases via Fluorescence-Activated Cell Sorting.	Lin AE, Lin Q.	Int J Mol Sci	10.3390/ijms20010029	2018
Dual stop codon suppression in mammalian cells with genomically integrated genetic code expansion machinery.	Meineke B, Heimgartner J, Caridha R, Block MF, Kimler KJ, Pires MF, Landreh M, Elsasser SJ.	Cell Rep Methods	10.1016/j.crmeth.2023.100626	2023
Class I and class II lysyl-tRNA synthetase mutants and the genetic encoding of pyrrolysine in Methanosarcina spp.	Mahapatra A, Srinivasan G, Richter KB, Meyer A, Lienard T, Zhang JK, Zhao G, Kang PT, Chan M, Gottschalk G, Metcalf WW, Krzycki JA.	Mol Microbiol	10.1111/j.1365-2958.2007.05740.x	2007
Influence of sulfide on diazotrophic growth of the methanogen Methanococcus maripaludis and its implications for the origin of nitrogenase.	Payne D, Spietz RL, Newell DL, Dijkstra P, Boyd ES.	Commun Biol	10.1038/s42003-023-05163-9	2023
Enhanced sensitivity of DNA- and rRNA-based stable isotope probing by fractionation and quantitative analysis of isopycnic centrifugation gradients.	Lueders T, Manefield M, Friedrich MW.	Environ Microbiol	10.1046/j.1462-2920.2003.00536.x	2004
Evolving understanding of rumen methanogen ecophysiology.	Khairunisa BH, Heryakusuma C, Ike K, Mukhopadhyay B, Susanti D.	Front Microbiol	10.3389/fmicb.2023.1296008	2023
Antimicrobial activity of different proteins and their fragments from Bacillus thuringiensis parasporal crystals against clostridia and archaea.	Yudina TG, Brioukhanov AL, Zalunin IA, Revina LP, Shestakov AI, Voyushina NE, Chestukhina GG, Netrusov AI.	Anaerobe	10.1016/j.anaerobe.2006.09.006	2007
Genetic code: introducing pyrrolysine.	Ibba M, Soll D.	Curr Biol	10.1016/s0960-9822(02)00947-8	2002
Rat microbial biogeography and age-dependent lactic acid bacteria in healthy lungs.	Zhao L, Cunningham CM, Andruska AM, Schimmel K, Ali MK, Kim D, Gu S, Chang JL, Spiekerkoetter E, Nicolls MR.	Lab Anim (NY)	10.1038/s41684-023-01322-x	2024
Physiological and molecular characterizations of the interactions in two cellulose-to-methane cocultures.	Lu H, Ng SK, Jia Y, Cai M, Lee PKH.	Biotechnol Biofuels	10.1186/s13068-017-0719-y	2017
Influence of the addition of sulphate and ferric ions in a methanogenic anaerobic packed-bed reactor treating gasoline-contaminated water.	Fernandes BS, Chinalia FA, Sarti A, Silva AJ, Foresti E, Zaiat M.	Water Sci Technol	10.2166/wst.2006.496	2006
Complete genome sequence of Methanospirillum hungatei type strain JF1.	Gunsalus RP, Cook LE, Crable B, Rohlin L, McDonald E, Mouttaki H, Sieber JR, Poweleit N, Zhou H, Lapidus AL, Daligault HE, Land M, Gilna P, Ivanova N, Kyrpides N, Culley DE, McInerney MJ.	Stand Genomic Sci	10.1186/s40793-015-0124-8	2016
Activation of the pyrrolysine suppressor tRNA requires formation of a ternary complex with class I and class II lysyl-tRNA synthetases.	Polycarpo C, Ambrogelly A, Ruan B, Tumbula-Hansen D, Ataide SF, Ishitani R, Yokoyama S, Nureki O, Ibba M, Soll D.	Mol Cell	10.1016/s1097-2765(03)00280-6	2003
A new UAG-encoded residue in the structure of a methanogen methyltransferase.	Hao B, Gong W, Ferguson TK, James CM, Krzycki JA, Chan MK.	Science	10.1126/science.1069556	2002
The role of zinc in the methylation of the coenzyme M thiol group in methanol:coenzyme M methyltransferase from Methanosarcina barkeri.	Kruer M, Haumann M, Meyer-Klaucke W, Thauer RK, Dau H.	Eur J Biochem	10.1046/j.1432-1033.2002.02860.x	2002
Aminoacylation of tRNA 2'- or 3'-hydroxyl by phosphoseryl- and pyrrolysyl-tRNA synthetases.	Englert M, Moses S, Hohn M, Ling J, O'Donoghue P, Soll D.	FEBS Lett	10.1016/j.febslet.2013.08.037	2013
Catabolic Machinery of the Human Gut Microbes Bestow Resilience Against Vanillin Antimicrobial Nature.	Yadav M, Pandey R, Chauhan NS.	Front Microbiol	10.3389/fmicb.2020.588545	2020
An Evolved Methanomethylophilus alvus Pyrrolysyl-tRNA Synthetase/tRNA Pair Is Highly Active and Orthogonal in Mammalian Cells.	Beranek V, Willis JCW, Chin JW.	Biochemistry	10.1021/acs.biochem.8b00808	2019
Microbial growth by a net heat up-take: a calorimetric and thermodynamic study on acetotrophic methanogenesis by Methanosarcina barkeri.	Liu JS, Marison IW, von Stockar U.	Biotechnol Bioeng	10.1002/bit.1176	2001
Phylogenetic and Structural Comparisons of the Three Types of Methyl Coenzyme M Reductase from Methanococcales and Methanobacteriales.	Wagner T, Wegner CE, Kahnt J, Ermler U, Shima S.	J Bacteriol	10.1128/jb.00197-17	2017
Effect of Nickel and Cobalt on Methanogenic Enrichment Cultures and Role of Biogenic Sulfide in Metal Toxicity Attenuation.	Paulo LM, Ramiro-Garcia J, van Mourik S, Stams AJM, Sousa DZ.	Front Microbiol	10.3389/fmicb.2017.01341	2017
Amber-codon suppression for spatial localization and in vivo photoaffinity capture of the interactome of the Pseudomonas aeruginosa rare lipoprotein A lytic transglycosylase.	Avila-Cobian LF, Hoshino H, Horsman ME, Nguyen VT, Qian Y, Feltzer R, Kim C, Hu DD, Champion MM, Fisher JF, Mobashery S.	Protein Sci	10.1002/pro.4781	2023
Genetic Incorporation of Noncanonical Amino Acids Using Two Mutually Orthogonal Quadruplet Codons.	Hankore ED, Zhang L, Chen Y, Liu K, Niu W, Guo J.	ACS Synth Biol	10.1021/acssynbio.9b00051	2019
Isolation and characterization of new Methanosarcina mazei strains KOR-3, -4, -5, and -6 from an anaerobic digester using pig slurry.	Battumur U, Yoon Y, Bae GS, Kim CH.	Asian-Australas J Anim Sci	10.5713/ajas.16.0830	2017
Acetogens and acetoclastic methanosarcinales govern methane formation in abandoned coal mines.	Beckmann S, Lueders T, Kruger M, von Netzer F, Engelen B, Cypionka H.	Appl Environ Microbiol	10.1128/aem.02818-10	2011
Biological treatment of biowaste as an innovative source of CO-The role of composting process.	Sobieraj K, Stegenta-Dabrowska S, Luo G, Koziel JA, Bialowiec A.	Front Bioeng Biotechnol	10.3389/fbioe.2023.1126737	2023
Methanogenesis from furfural by defined mixed cultures.	Boopathy R.	Curr Microbiol	10.1007/s00284-001-0010-z	2002
Structure of the membrane-bound formate hydrogenlyase complex from Escherichia coli.	Steinhilper R, Hoff G, Heider J, Murphy BJ.	Nat Commun	10.1038/s41467-022-32831-x	2022
Organic Semiconducting Polymers for Augmenting Biosynthesis and Bioconversion.	Chen W, Lin H, Yu W, Huang Y, Lv F, Bai H, Wang S.	JACS Au	10.1021/jacsau.3c00576	2024
F420H2 Is Required for Phthiocerol Dimycocerosate Synthesis in Mycobacteria.	Purwantini E, Daniels L, Mukhopadhyay B.	J Bacteriol	10.1128/jb.01035-15	2016
PCR-based DGGE fingerprinting and identification of methanogens detected in three different types of UASB granules.	Keyser M, Witthuhn RC, Lamprecht C, Coetzee MP, Britz TJ.	Syst Appl Microbiol	10.1016/j.syapm.2005.06.003	2006
Hydrogen concentrations in methane-forming cells probed by the ratios of reduced and oxidized coenzyme F420.	de Poorter LMI, Geerts WJ, Keltjens JT.	Microbiology (Reading)	10.1099/mic.0.27679-0	2005
It does not always take two to tango: "Syntrophy" via hydrogen cycling in one bacterial cell.	Wiechmann A, Ciurus S, Oswald F, Seiler VN, Muller V.	ISME J	10.1038/s41396-020-0627-1	2020
Two-Tier Screening Platform for Directed Evolution of Aminoacyl-tRNA Synthetases with Enhanced Stop Codon Suppression Efficiency.	Owens AE, Grasso KT, Ziegler CA, Fasan R.	Chembiochem	10.1002/cbic.201700039	2017
Metabolomics Comparison of Hanwoo (Bos taurus coreanae) Biofluids Using Proton Nuclear Magnetic Resonance Spectroscopy.	Eom JS, Lee SJ, Kim HS, Choi YY, Kim SH, Lee YG, Lee SS.	Metabolites	10.3390/metabo10080333	2020
Pyrrolysine encoded by UAG in Archaea: charging of a UAG-decoding specialized tRNA.	Srinivasan G, James CM, Krzycki JA.	Science	10.1126/science.1069588	2002
Response of Methanogen Communities to the Elevation of Cathode Potentials in Bioelectrochemical Reactors Amended with Magnetite.	Gao K, Wang X, Huang J, Xia X, Lu Y.	Appl Environ Microbiol	10.1128/aem.01488-21	2021
Zinc-thiolate intermediate in catalysis of methyl group transfer in Methanosarcina barkeri.	Gencic S, LeClerc GM, Gorlatova N, Peariso K, Penner-Hahn JE, Grahame DA.	Biochemistry	10.1021/bi0112917	2001
The streptothricin acetyltransferase (sat) gene as a positive selectable marker for methanogenic archaea.	Farley KR, Metcalf WW.	FEMS Microbiol Lett	10.1093/femsle/fnz216	2019
Soil Properties Interacting With Microbial Metagenome in Decreasing CH₄ Emission From Seasonally Flooded Marshland Following Different Stages of Afforestation.	Zhang Q, Tang J, Angel R, Wang D, Hu X, Gao S, Zhang L, Tang Y, Zhang X, Koide RT, Yang H, Sun Q.	Front Microbiol	10.3389/fmicb.2022.830019	2022
Bacteria employ lysine acetylation of transcriptional regulators to adapt gene expression to cellular metabolism.	Kremer M, Schulze S, Eisenbruch N, Nagel F, Vogt R, Berndt L, Dorre B, Palm GJ, Hoppen J, Girbardt B, Albrecht D, Sievers S, Delcea M, Baumann U, Schnetz K, Lammers M.	Nat Commun	10.1038/s41467-024-46039-8	2024
Protection of Methanosarcina barkeri against oxidative stress: identification and characterization of an iron superoxide dismutase.	Brioukhanov A, Netrusov A, Sordel M, Thauer RK, Shima S.	Arch Microbiol	10.1007/s002030000180	2000
Thermophilic Biogas Upgrading via ex Situ Addition of H₂ and CO₂ Using Codigested Feedstocks of Cow Manure and the Organic Fraction of Solid Municipal Waste.	Sekoai PT, Engelbrecht N, du Preez SP, Bessarabov D.	ACS Omega	10.1021/acsomega.0c01725	2020
Enhancement of methanogenesis by electric syntrophy with biogenic iron-sulfide minerals.	Kato S, Igarashi K.	Microbiologyopen	10.1002/mbo3.647	2019
In-Silico Detection of Oral Prokaryotic Species With Highly Similar 16S rRNA Sequence Segments Using Different Primer Pairs.	Regueira-Iglesias A, Vazquez-Gonzalez L, Balsa-Castro C, Blanco-Pintos T, Martin-Biedma B, Arce VM, Carreira MJ, Tomas I.	Front Cell Infect Microbiol	10.3389/fcimb.2021.770668	2021
The amber codon in the gene encoding the monomethylamine methyltransferase isolated from Methanosarcina barkeri is translated as a sense codon.	James CM, Ferguson TK, Leykam JF, Krzycki JA.	J Biol Chem	10.1074/jbc.m102929200	2001
Heme biosynthesis in Methanosarcina barkeri via a pathway involving two methylation reactions.	Buchenau B, Kahnt J, Heinemann IU, Jahn D, Thauer RK.	J Bacteriol	10.1128/jb.01349-06	2006
Reconstitution of dimethylamine:coenzyme M methyl transfer with a discrete corrinoid protein and two methyltransferases purified from Methanosarcina barkeri.	Ferguson DJ, Gorlatova N, Grahame DA, Krzycki JA.	J Biol Chem	10.1074/jbc.m910218199	2000
Co-occurrence of Methanosarcina mazei and Geobacteraceae in an iron (III)-reducing enrichment culture.	Zheng S, Zhang H, Li Y, Zhang H, Wang O, Zhang J, Liu F.	Front Microbiol	10.3389/fmicb.2015.00941	2015
Expression of acetylcholine (ACh) and ACh-synthesizing activity in Archaea.	Yamada T, Fujii T, Kanai T, Amo T, Imanaka T, Nishimasu H, Wakagi T, Shoun H, Kamekura M, Kamagata Y, Kato T, Kawashima K.	Life Sci	10.1016/j.lfs.2005.01.026	2005
Unraveling the phylogenomic diversity of Methanomassiliicoccales and implications for mitigating ruminant methane emissions.	Xie F, Zhao S, Zhan X, Zhou Y, Li Y, Zhu W, Pope PB, Attwood GT, Jin W, Mao S.	Genome Biol	10.1186/s13059-024-03167-0	2024
Complementary Microorganisms in Highly Corrosive Biofilms from an Offshore Oil Production Facility.	Vigneron A, Alsop EB, Chambers B, Lomans BP, Head IM, Tsesmetzis N.	Appl Environ Microbiol	10.1128/aem.03842-15	2016
Anaerobic bioconversion of cellulose by Ruminococcus albus, Methanobrevibacter smithii, and Methanosarcina barkeri.	Miller TL, Currenti E, Wolin MJ.	Appl Microbiol Biotechnol	10.1007/s002530000430	2000
A Combinatorial Algorithm for Microbial Consortia Synthetic Design.	Julien-Laferriere A, Bulteau L, Parrot D, Marchetti-Spaccamela A, Stougie L, Vinga S, Mary A, Sagot MF.	Sci Rep	10.1038/srep29182	2016
The MtsA subunit of the methylthiol:coenzyme M methyltransferase of Methanosarcina barkeri catalyses both half-reactions of corrinoid-dependent dimethylsulfide: coenzyme M methyl transfer.	Tallant TC, Paul L, Krzycki JA.	J Biol Chem	10.1074/jbc.m007514200	2001
Differentiated stimulating effects of activated carbon on methanogenic degradation of acetate, propionate and butyrate.	Xu S, Han R, Zhang Y, He C, Liu H.	Waste Manag	10.1016/j.wasman.2018.03.037	2018
Methanogenic response to long-term permafrost thaw is determined by paleoenvironment.	Holm S, Walz J, Horn F, Yang S, Grigoriev MN, Wagner D, Knoblauch C, Liebner S.	FEMS Microbiol Ecol	10.1093/femsec/fiaa021	2020
Genetically Encoded Quinone Methides Enabling Rapid, Site-Specific, and Photocontrolled Protein Modification with Amine Reagents.	Liu J, Cheng R, Van Eps N, Wang N, Morizumi T, Ou WL, Klauser PC, Rozovsky S, Ernst OP, Wang L.	J Am Chem Soc	10.1021/jacs.0c06820	2020
Efficient Unnatural Protein Production by Pyrrolysyl-tRNA Synthetase With Genetically Fused Solubility Tags.	Koch NG, Baumann T, Budisa N.	Front Bioeng Biotechnol	10.3389/fbioe.2021.807438	2021
The auxiliary [4Fe-4S] cluster of the Radical SAM heme synthase from Methanosarcina barkeri is involved in electron transfer.	Kuhner M, Schweyen P, Hoffmann M, Ramos JV, Reijerse EJ, Lubitz W, Broring M, Layer G.	Chem Sci	10.1039/c6sc01140c	2016
Refined experimental annotation reveals conserved corrinoid autotrophy in chloroform-respiring Dehalobacter isolates.	Wang PH, Tang S, Nemr K, Flick R, Yan J, Mahadevan R, Yakunin AF, Loffler FE, Edwards EA.	ISME J	10.1038/ismej.2016.158	2017
Combined Stochastic and Deterministic Processes Drive Community Assembly of Anaerobic Microbiomes During Granule Flotation.	Trego AC, McAteer PG, Nzeteu C, Mahony T, Abram F, Ijaz UZ, O'Flaherty V.	Front Microbiol	10.3389/fmicb.2021.666584	2021
Genetic analysis of mch mutants in two Methanosarcina species demonstrates multiple roles for the methanopterin-dependent C-1 oxidation/reduction pathway and differences in H(2) metabolism between closely related species.	Guss AM, Mukhopadhyay B, Zhang JK, Metcalf WW.	Mol Microbiol	10.1111/j.1365-2958.2005.04514.x	2005
Activation and reaction kinetics of the dimethylamine/coenzyme M methyltransfer in Methanosarcina barkeri strain Fusaro.	Wassenaar RW, Keltjens JT, van der Drift C.	Eur J Biochem	10.1046/j.1432-1327.1998.2580597.x	1998
Hydrogen production by methanogens under low-hydrogen conditions.	Valentine DL, Blanton DC, Reeburgh WS.	Arch Microbiol	10.1007/s002030000224	2000
Investigation of serine hydroxymethyltransferase in methanogens.	Lin Z, Sparling R.	Can J Microbiol	10.1139/cjm-44-7-652	1998
Molecular identification of methanogenic archaea from surti buffaloes (bubalus bubalis), reveals more hydrogenotrophic methanogens phylotypes.	Singh KM, Pandya PR, Parnerkar S, Tripathi AK, Rank DN, Kothari RK, Joshi CG.	Braz J Microbiol	10.1590/s1517-83822011000100017	2011
A multisubunit membrane-bound [NiFe] hydrogenase and an NADH-dependent Fe-only hydrogenase in the fermenting bacterium Thermoanaerobacter tengcongensis.	Soboh B, Linder D, Hedderich R.	Microbiology (Reading)	10.1099/mic.0.27159-0	2004
Probing unnatural amino acid integration into enhanced green fluorescent protein by genetic code expansion with a high-throughput screening platform.	Wandrey G, Wurzel J, Hoffmann K, Ladner T, Buchs J, Meinel L, Luhmann T.	J Biol Eng	10.1186/s13036-016-0031-6	2016
Purification, characterization, and primary structure of a monofunctional catalase from Methanosarcina barkeri.	Shima S, Netrusov A, Sordel M, Wicke M, Hartmann GC, Thauer RK.	Arch Microbiol	10.1007/s002030050716	1999
Acetoclastic Methanosaeta are dominant methanogens in organic-rich Antarctic marine sediments.	Carr SA, Schubotz F, Dunbar RB, Mills CT, Dias R, Summons RE, Mandernack KW.	ISME J	10.1038/ismej.2017.150	2018
Effect of octamethylcyclotetrasiloxane on methylation of bismuth by Methanosarcina barkeri.	Michalke K, Meyer J, Hensel R.	Appl Environ Microbiol	10.1128/aem.00694-06	2006
IMGMD: A platform for the integration and standardisation of In silico Microbial Genome-scale Metabolic Models.	Ye C, Xu N, Dong C, Ye Y, Zou X, Chen X, Guo F, Liu L.	Sci Rep	10.1038/s41598-017-00820-6	2017
Improved production of the non-native cofactor F₄₂₀ in Escherichia coli.	Shah MV, Nazem-Bokaee H, Antoney J, Kang SW, Jackson CJ, Scott C.	Sci Rep	10.1038/s41598-021-01224-3	2021
Investigating the biological potential of galactic cosmic ray-induced radiation-driven chemical disequilibrium in the Martian subsurface environment.	Atri D.	Sci Rep	10.1038/s41598-020-68715-7	2020
A bio-orthogonal linear ubiquitin probe identifies STAT3 as a direct substrate of OTULIN in glioblastoma.	Du X, Pang J, Gu B, Si T, Chang Y, Li T, Wu M, Wang Z, Wang Y, Feng J, Wu N, Man J, Li H, Li A, Zhang T, Wang B, Duan X.	Nucleic Acids Res	10.1093/nar/gkad002	2023
An alternative resource allocation strategy in the chemolithoautotrophic archaeon Methanococcus maripaludis.	Muller AL, Gu W, Patsalo V, Deutzmann JS, Williamson JR, Spormann AM.	Proc Natl Acad Sci U S A	10.1073/pnas.2025854118	2021
Methane Production by Facultative Anaerobic Wood-Rot Fungi via a New Halomethane-Dependent Pathway.	Huang X, Liu X, Xue Y, Pan B, Xiao L, Wang S, Lever MA, Hinrichs KU, Inagaki F, Liu C.	Microbiol Spectr	10.1128/spectrum.01700-22	2022
Methanol:coenzyme M methyltransferase from Methanosarcina barkeri -- substitution of the corrinoid harbouring subunit MtaC by free cob(I)alamin.	Sauer K, Thauer RK.	Eur J Biochem	10.1046/j.1432-1327.1999.00355.x	1999
An Antarctic Extreme Halophile and Its Polyextremophilic Enzyme: Effects of Perchlorate Salts.	Laye VJ, DasSarma S.	Astrobiology	10.1089/ast.2017.1766	2018
Microbial dynamics during azo dye degradation in a UASB reactor supplied with yeast extract.	Silva SQ, Silva DC, Lanna MC, Baeta BE, Aquino SF.	Braz J Microbiol	10.1590/s1517-83822014000400005	2014
A paramagnetic species with unique EPR characteristics in the active site of heterodisulfide reductase from methanogenic archaea.	Madadi-Kahkesh S, Duin EC, Heim S, Albracht SP, Johnson MK, Hedderich R.	Eur J Biochem	10.1046/j.1432-1327.2001.02141.x	2001
Enrichment of syngas-converting communities from a multi-orifice baffled bioreactor.	Arantes AL, Alves JI, Stams AJM, Alves MM, Sousa DZ.	Microb Biotechnol	10.1111/1751-7915.12864	2018
Purification and catalytic properties of Ech hydrogenase from Methanosarcina barkeri.	Meuer J, Bartoschek S, Koch J, Kunkel A, Hedderich R.	Eur J Biochem	10.1046/j.1432-1327.1999.00738.x	1999
Preliminary structural studies on the MtxX protein from Methanococcus jannaschii.	Shin DH.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309108007033	2008
Two F420-reducing hydrogenases in methanosarcina barkeri	Vaupel M, Thauer RK.	Arch Microbiol	10.1007/s002030050561	1998
A novel membrane-bound Ech [NiFe] hydrogenase in Desulfovibrio gigas.	Rodrigues R, Valente FM, Pereira IA, Oliveira S, Rodrigues-Pousada C.	Biochem Biophys Res Commun	10.1016/s0006-291x(03)00975-6	2003
Purification and characterization of dimethylamine:5-hydroxybenzimidazolyl-cobamide methyltransferase from Methanosarcina barkeri Fusaro.	Wassenaar RW, Keltjens JT, van der Drift C, Vogels GD.	Eur J Biochem	10.1046/j.1432-1327.1998.2530692.x	1998
Methyl fluoride affects methanogenesis rather than community composition of methanogenic archaea in a rice field soil.	Daebeler A, Gansen M, Frenzel P.	PLoS One	10.1371/journal.pone.0053656	2013
Methyl-coenzyme M formation in methanogenic archaea. Involvement of zinc in coenzyme M activation.	Sauer K, Thauer RK.	Eur J Biochem	10.1046/j.1432-1327.2000.01245.x	2000
Kinetic modeling of Stickland reactions-coupled methanogenesis for a methanogenic culture.	Sangavai C, Bharathi M, Ganesh SP, Chellapandi P.	AMB Express	10.1186/s13568-019-0803-8	2019
Enhancing methane production from food waste fermentate using biochar: the added value of electrochemical testing in pre-selecting the most effective type of biochar.	Cruz Viggi C, Simonetti S, Palma E, Pagliaccia P, Braguglia C, Fazi S, Baronti S, Navarra MA, Pettiti I, Koch C, Harnisch F, Aulenta F.	Biotechnol Biofuels	10.1186/s13068-017-0994-7	2017
Coenzyme M binds to a [4Fe-4S] cluster in the active site of heterodisulfide reductase as deduced from EPR studies with the [33S]coenzyme M-treated enzyme.	Duin EC, Bauer C, Jaun B, Hedderich R.	FEBS Lett	10.1016/s0014-5793(03)00134-0	2003
A story of chelatase evolution: identification and characterization of a small 13-15-kDa "ancestral" cobaltochelatase (CbiXS) in the archaea.	Brindley AA, Raux E, Leech HK, Schubert HL, Warren MJ.	J Biol Chem	10.1074/jbc.m302468200	2003
Systematic classification of the His-Me finger superfamily.	Jablonska J, Matelska D, Steczkiewicz K, Ginalski K.	Nucleic Acids Res	10.1093/nar/gkx924	2017
Effect of Sub-Stoichiometric Fe(III) Amounts on LCFA Degradation by Methanogenic Communities.	Cavaleiro AJ, Guedes AP, Silva SA, Arantes AL, Sequeira JC, Salvador AF, Sousa DZ, Stams AJM, Alves MM.	Microorganisms	10.3390/microorganisms8091375	2020
Comparison of three methyl-coenzyme M reductases from phylogenetically distant organisms: unusual amino acid modification, conservation and adaptation.	Grabarse W, Mahlert F, Shima S, Thauer RK, Ermler U.	J Mol Biol	10.1006/jmbi.2000.4136	2000
A purified energy-converting hydrogenase from Thermoanaerobacter kivui demonstrates coupled H⁺-translocation and reduction in vitro.	Katsyv A, Muller V.	J Biol Chem	10.1016/j.jbc.2022.102216	2022
Assessment of the oxidant tolerance of Methanosarcina acetivorans.	Horne AJ, Lessner DJ.	FEMS Microbiol Lett	10.1111/1574-6968.12115	2013
Methanol:coenzyme M methyltransferase from Methanosarcina barkeri--identification of the active-site histidine in the corrinoid-harboring subunit MtaC by site-directed mutagenesis.	Sauer K, Thauer RK.	Eur J Biochem	10.1046/j.1432-1327.1998.2530698.x	1998
Cysteinyl-tRNA formation: the last puzzle of aminoacyl-tRNA synthesis.	Li T, Graham DE, Stathopoulos C, Haney PJ, Kim HS, Vothknecht U, Kitabatake M, Hong KW, Eggertsson G, Curnow AW, Lin W, Celic I, Whitman W, Soll D.	FEBS Lett	10.1016/s0014-5793(99)01550-1	1999
Methanol:coenzyme M methyltransferase from Methanosarcina barkeri. Zinc dependence and thermodynamics of the methanol:cob(I)alamin methyltransferase reaction.	Sauer K, Thauer RK.	Eur J Biochem	10.1111/j.1432-1033.1997.t01-1-00280.x	1997
Exploiting Biological Nitrogen Fixation: A Route Towards a Sustainable Agriculture.	Soumare A, Diedhiou AG, Thuita M, Hafidi M, Ouhdouch Y, Gopalakrishnan S, Kouisni L.	Plants (Basel)	10.3390/plants9081011	2020
Purification and characterization of recombinant malate synthase enzymes from Streptomyces coelicolor A3(2) and S. clavuligerus NRRL3585.	Loke P, Goh LL, Seng Soh B, Yeow P, Sim TS.	J Ind Microbiol Biotechnol	10.1038/sj/jim/7000240	2002
Exploring Hydrogenotrophic Methanogenesis: a Genome Scale Metabolic Reconstruction of Methanococcus maripaludis.	Richards MA, Lie TJ, Zhang J, Ragsdale SW, Leigh JA, Price ND.	J Bacteriol	10.1128/jb.00571-16	2016
Iron and sulfate reduction structure microbial communities in (sub-)Antarctic sediments.	Wunder LC, Aromokeye DA, Yin X, Richter-Heitmann T, Willis-Poratti G, Schnakenberg A, Otersen C, Dohrmann I, Romer M, Bohrmann G, Kasten S, Friedrich MW.	ISME J	10.1038/s41396-021-01014-9	2021
The iron-sulfur centers of the pyruvate:ferredoxin oxidoreductase from Methanosarcina barkeri (Fusaro).	Bock AK, Schonheit P, Teixeira M.	FEBS Lett	10.1016/s0014-5793(97)00998-8	1997
Energy conservation by a hydrogenase-dependent chemiosmotic mechanism in an ancient metabolic pathway.	Schoelmerich MC, Muller V.	Proc Natl Acad Sci U S A	10.1073/pnas.1818580116	2019
N-carboxymethanofuran (carbamate) formation from methanofuran and CO2 in methanogenic archaea. Thermodynamics and kinetics of the spontaneous reaction.	Bartoschek S, Vorholt JA, Thauer RK, Geierstanger BH, Griesinger C.	Eur J Biochem	10.1046/j.1432-1327.2000.01331.x	2000
Biochar Facilitated Direct Interspecies Electron Transfer in Anaerobic Digestion to Alleviate Antibiotics Inhibition and Enhance Methanogenesis: A Review.	Zhang K, Deng Y, Liu Z, Feng Y, Hu C, Wang Z.	Int J Environ Res Public Health	10.3390/ijerph20032296	2023
Differences in hydrogenase gene expression between Methanosarcina acetivorans and Methanosarcina barkeri.	Guss AM, Kulkarni G, Metcalf WW.	J Bacteriol	10.1128/jb.00563-08	2009
LigD: A Structural Guide to the Multi-Tool of Bacterial Non-Homologous End Joining.	Amare B, Mo A, Khan N, Sowa DJ, Warner MM, Tetenych A, Andres SN.	Front Mol Biosci	10.3389/fmolb.2021.787709	2021
Quantitative amino acid analysis of bovine NADH:ubiquinone oxidoreductase (Complex I) and related enzymes. Consequences for the number of prosthetic groups.	Albracht SP, van der Linden E, Faber BW.	Biochim Biophys Acta	10.1016/s0005-2728(02)00393-6	2003
PylSn and the homologous N-terminal domain of pyrrolysyl-tRNA synthetase bind the tRNA that is essential for the genetic encoding of pyrrolysine.	Jiang R, Krzycki JA.	J Biol Chem	10.1074/jbc.m112.396754	2012
Protein modification via alkyne hydrosilylation using a substoichiometric amount of ruthenium(ii) catalyst.	Kwan TT, Boutureira O, Frye EC, Walsh SJ, Gupta MK, Wallace S, Wu Y, Zhang F, Sore HF, Galloway WRJD, Chin JW, Welch M, Bernardes GJL, Spring DR.	Chem Sci	10.1039/c6sc05313k	2017
Effect of dilution rate on structure of a mesophilic acetate-degrading methanogenic community during continuous cultivation.	Shigematsu T, Tang Y, Kawaguchi H, Ninomiya K, Kijima J, Kobayashi T, Morimura S, Kida K.	J Biosci Bioeng	10.1016/s1389-1723(04)70148-6	2003
Methanol:coenzyme M methyltransferase from Methanosarcina barkeri. Purification, properties and encoding genes of the corrinoid protein MT1.	Sauer K, Harms U, Thauer RK.	Eur J Biochem	10.1111/j.1432-1033.1997.t01-1-00670.x	1997
Systematic Analysis of Escherichia coli Isolates from Sheep and Cattle Suggests Adaption to the Rumen Niche.	Pang J, Liu Z, Zhang Q, Lu X, Qi Q.	Appl Environ Microbiol	10.1128/aem.01417-20	2020
The tRNA discriminator base defines the mutual orthogonality of two distinct pyrrolysyl-tRNA synthetase/tRNAPyl pairs in the same organism.	Zhang H, Gong X, Zhao Q, Mukai T, Vargas-Rodriguez O, Zhang H, Zhang Y, Wassel P, Amikura K, Maupin-Furlow J, Ren Y, Xu X, Wolf YI, Makarova KS, Koonin EV, Shen Y, Soll D, Fu X.	Nucleic Acids Res	10.1093/nar/gkac271	2022
Activation mechanism of methanol:5-hydroxybenzimidazolylcobamide methyltransferase from Methanosarcina barkeri.	Daas PJ, Hagen WR, Keltjens JT, van der Drift C, Vogels GD.	J Biol Chem	10.1074/jbc.271.37.22346	1996
Microbial Resource Management for Ex Situ Biomethanation of Hydrogen at Alkaline pH.	Logrono W, Popp D, Kleinsteuber S, Strauber H, Harms H, Nikolausz M.	Microorganisms	10.3390/microorganisms8040614	2020
Characterization of the N-ATPase, a distinct, laterally transferred Na+-translocating form of the bacterial F-type membrane ATPase.	Dibrova DV, Galperin MY, Mulkidjanian AY.	Bioinformatics	10.1093/bioinformatics/btq234	2010
Structure and function of an unusual flavodoxin from the domain Archaea.	Prakash D, Iyer PR, Suharti S, Walters KA, Santiago-Martinez MG, Golbeck JH, Murakami KS, Ferry JG.	Proc Natl Acad Sci U S A	10.1073/pnas.1908578116	2019
Roco Proteins: GTPases with a Baroque Structure and Mechanism.	Wauters L, Versees W, Kortholt A.	Int J Mol Sci	10.3390/ijms20010147	2019
The active species of 'CO2' utilized by formylmethanofuran dehydrogenase from methanogenic Archaea.	Vorholt JA, Thauer RK.	Eur J Biochem	10.1111/j.1432-1033.1997.00919.x	1997
Genetic basis for metabolism of methylated sulfur compounds in Methanosarcina species.	Fu H, Metcalf WW.	J Bacteriol	10.1128/jb.02605-14	2015
Misacylation of pyrrolysine tRNA in vitro and in vivo.	Gundllapalli S, Ambrogelly A, Umehara T, Li D, Polycarpo C, Soll D.	FEBS Lett	10.1016/j.febslet.2008.08.027	2008
Energy-converting hydrogenases: the link between H₂ metabolism and energy conservation.	Schoelmerich MC, Muller V.	Cell Mol Life Sci	10.1007/s00018-019-03329-5	2020
Heterodisulfide reductase from methanol-grown cells of Methanosarcina barkeri is not a flavoenzyme.	Kunkel A, Vaupel M, Heim S, Thauer RK, Hedderich R.	Eur J Biochem	10.1111/j.1432-1033.1997.00226.x	1997
An Escherichia coli hydrogenase-3-type hydrogenase in methanogenic archaea.	Kunkel A, Vorholt JA, Thauer RK, Hedderich R.	Eur J Biochem	10.1046/j.1432-1327.1998.2520467.x	1998
Primary structure and properties of the formyltransferase from the mesophilic Methanosarcina barkeri: comparison with the enzymes from thermophilic and hyperthermophilic methanogens.	Kunow J, Shima S, Vorholt JA, Thauer RK.	Arch Microbiol	10.1007/s002030050303	1996
An integrated systems biology approach reveals differences in formate metabolism in the genus Methanothermobacter.	Casini I, McCubbin T, Esquivel-Elizondo S, Luque GG, Evseeva D, Fink C, Beblawy S, Youngblut ND, Aristilde L, Huson DH, Drager A, Ley RE, Marcellin E, Angenent LT, Molitor B.	iScience	10.1016/j.isci.2023.108016	2023
Purification and properties of an enzyme involved in the ATP-dependent activation of the methanol:2-mercaptoethanesulfonic acid methyltransferase reaction in Methanosarcina barkeri.	Daas PJ, Wassenaar RW, Willemsen P, Theunissen RJ, Keltjens JT, van der Drift C, Vogels GD.	J Biol Chem	10.1074/jbc.271.37.22339	1996
A polyferredoxin with eight [4Fe-4S] clusters as a subunit of molybdenum formylmethanofuran dehydrogenase from Methanosarcina barkeri.	Vorholt JA, Vaupel M, Thauer RK.	Eur J Biochem	10.1111/j.1432-1033.1996.t01-1-00309.x	1996
Redox-dependent acetyl transfer partial reaction of the acetyl-CoA decarbonylase/synthase complex: kinetics and mechanism.	Bhaskar B, DeMoll E, Grahame DA.	Biochemistry	10.1021/bi9812423	1998
TK1211 Encodes an Amino Acid Racemase towards Leucine and Methionine in the Hyperthermophilic Archaeon Thermococcus kodakarensis.	Zheng RC, Lu XF, Tomita H, Hachisuka SI, Zheng YG, Atomi H.	J Bacteriol	10.1128/jb.00617-20	2021
[Amine oxidase from the bacterial strain Methanosarcina barkeri 27].	Dianova MM, Nikol'skaia EB, Iagodina OV, Grinberg BA, Lukmane IR.	Zh Evol Biokhim Fiziol		1996
Mode of action uncovered for the specific reduction of methane emissions from ruminants by the small molecule 3-nitrooxypropanol.	Duin EC, Wagner T, Shima S, Prakash D, Cronin B, Yanez-Ruiz DR, Duval S, Rumbeli R, Stemmler RT, Thauer RK, Kindermann M.	Proc Natl Acad Sci U S A	10.1073/pnas.1600298113	2016
Methylcobamide:coenzyme M methyltransferase isozymes from Methanosarcina barkeri. Physicochemical characterization, cloning, sequence analysis, and heterologous gene expression.	LeClerc GM, Grahame DA.	J Biol Chem	10.1074/jbc.271.31.18725	1996
Biochemical Characterization of the Lysine Acetylation of Tyrosyl-tRNA Synthetase in Escherichia coli.	Venkat S, Gregory C, Gan Q, Fan C.	Chembiochem	10.1002/cbic.201700343	2017
High Tolerance of Hydrogenothermus marinus to Sodium Perchlorate.	Beblo-Vranesevic K, Huber H, Rettberg P.	Front Microbiol	10.3389/fmicb.2017.01369	2017
Thermodynamic favorability and pathway yield as evolutionary tradeoffs in biosynthetic pathway choice.	Du B, Zielinski DC, Monk JM, Palsson BO.	Proc Natl Acad Sci U S A	10.1073/pnas.1805367115	2018
Methylcobalamin: coenzyme M methyltransferase isoenzymes MtaA and MtbA from Methanosarcina barkeri. Cloning, sequencing and differential transcription of the encoding genes, and functional overexpression of the mtaA gene in Escherichia coli.	Harms U, Thauer RK.	Eur J Biochem	10.1111/j.1432-1033.1996.00653.x	1996
Reversible and Tunable Photoswitching of Protein Function through Genetic Encoding of Azobenzene Amino Acids in Mammalian Cells.	Luo J, Samanta S, Convertino M, Dokholyan NV, Deiters A.	Chembiochem	10.1002/cbic.201800226	2018
Identification of specific corrinoids reveals corrinoid modification in dechlorinating microbial communities.	Men Y, Seth EC, Yi S, Crofts TS, Allen RH, Taga ME, Alvarez-Cohen L.	Environ Microbiol	10.1111/1462-2920.12500	2015
Characterization of energy-conserving hydrogenase B in Methanococcus maripaludis.	Major TA, Liu Y, Whitman WB.	J Bacteriol	10.1128/jb.01446-09	2010
Specific roles of methylcobamide:coenzyme M methyltransferase isozymes in metabolism of methanol and methylamines in Methanosarcina barkeri.	Ferguson DJ, Krzycki JA, Grahame DA.	J Biol Chem	10.1074/jbc.271.9.5189	1996
Cascading failure and robustness in metabolic networks.	Smart AG, Amaral LA, Ottino JM.	Proc Natl Acad Sci U S A	10.1073/pnas.0803571105	2008
Amino Acid Specificity of Ancestral Aminoacyl-tRNA Synthetase Prior to the Last Universal Common Ancestor Commonote commonote.	Furukawa R, Yokobori SI, Sato R, Kumagawa T, Nakagawa M, Katoh K, Yamagishi A.	J Mol Evol	10.1007/s00239-021-10043-z	2022
Idiosyncratic helix-turn-helix motif in Methanosarcina barkeri seryl-tRNA synthetase has a critical architectural role.	Bilokapic S, Ivic N, Godinic-Mikulcic V, Piantanida I, Ban N, Weygand-Durasevic I.	J Biol Chem	10.1074/jbc.m808501200	2009
Reconstitution of Monomethylamine:Coenzyme M methyl transfer with a corrinoid protein and two methyltransferases purified from Methanosarcina barkeri.	Burke SA, Krzycki JA.	J Biol Chem	10.1074/jbc.272.26.16570	1997
Influence of Martian regolith analogs on the activity and growth of methanogenic archaea, with special regard to long-term desiccation.	Schirmack J, Alawi M, Wagner D.	Front Microbiol	10.3389/fmicb.2015.00210	2015
How Low Can You Go: Methane Production of Methanobacterium congolense at Low CO₂ Concentrations.	Chen X, Ottosen LDM, Kofoed MVW.	Front Bioeng Biotechnol	10.3389/fbioe.2019.00034	2019
Two new phospholipids, hydroxyarchaetidylglycerol and hydroxyarchaetidylethanolamine, from the Archaea Methanosarcina barkeri.	Nishihara M, Koga Y.	Biochim Biophys Acta	10.1016/0005-2760(94)00178-2	1995
The transcriptional response of microbial communities in thawing Alaskan permafrost soils.	Coolen MJ, Orsi WD.	Front Microbiol	10.3389/fmicb.2015.00197	2015
Diversity analysis of thermophilic hydrogenogenic carboxydotrophs by carbon monoxide dehydrogenase amplicon sequencing using new primers.	Omae K, Oguro T, Inoue M, Fukuyama Y, Yoshida T, Sako Y.	Extremophiles	10.1007/s00792-020-01211-y	2021
Response of the Anaerobic Methanotroph "Candidatus Methanoperedens nitroreducens" to Oxygen Stress.	Guerrero-Cruz S, Cremers G, van Alen TA, Op den Camp HJM, Jetten MSM, Rasigraf O, Vaksmaa A.	Appl Environ Microbiol	10.1128/aem.01832-18	2018
Isolation and identification of ruminal methanogens from grazing cattle.	Jarvis GN, Strompl C, Burgess DM, Skillman LC, Moore ER, Joblin KN.	Curr Microbiol	10.1007/s002849910065	2000
Enhanced bioconversion of hydrogen and carbon dioxide to methane using a micro-nano sparger system: mass balance and energy consumption.	Liu Y, Wang Y, Wen X, Shimizu K, Lei Z, Kobayashi M, Zhang Z, Sumi I, Yao Y, Mogi Y.	RSC Adv	10.1039/c8ra02924e	2018
A Comprehensive Analysis of cis-Acting RNA Elements in the SARS-CoV-2 Genome by a Bioinformatics Approach.	Ahmed F, Sharma M, Al-Ghamdi AA, Al-Yami SM, Al-Salami AM, Refai MY, Warsi MK, Howladar SM, Baeshen MN.	Front Genet	10.3389/fgene.2020.572702	2020
The degree of redundancy in metabolic genes is linked to mode of metabolism.	Mahadevan R, Lovley DR.	Biophys J	10.1529/biophysj.107.118414	2008
Site-Specific Incorporation of Selenocysteine Using an Expanded Genetic Code and Palladium-Mediated Chemical Deprotection.	Liu J, Zheng F, Cheng R, Li S, Rozovsky S, Wang Q, Wang L.	J Am Chem Soc	10.1021/jacs.8b04603	2018
Refolding of denatured restriction endonucleases with ribosomal preparations from Methanosarcina barkeri.	Bera AK, Das B, Chattopadhyay S, Dasgupta C.	Biochem Mol Biol Int		1994
Biochemical characterization of the 8-hydroxy-5-deazaflavin-reactive hydrogenase from Methanosarcina barkeri Fusaro.	Michel R, Massanz C, Kostka S, Richter M, Fiebig K.	Eur J Biochem	10.1111/j.1432-1033.1995.727_3.x	1995
Purification and characterization of a membrane-bound enzyme complex from the sulfate-reducing archaeon Archaeoglobus fulgidus related to heterodisulfide reductase from methanogenic archaea.	Mander GJ, Duin EC, Linder D, Stetter KO, Hedderich R.	Eur J Biochem	10.1046/j.1432-1033.2002.02839.x	2002
[Use of the level of G+C n DNA for studying the molecular phylogeny o f methanogenic archaebacteria].	Ivanov VN, Stabnikova EV.	Mikrobiologiia		1999
Energy Metabolism during Anaerobic Methane Oxidation in ANME Archaea.	McGlynn SE.	Microbes Environ	10.1264/jsme2.me16166	2017
Substrate and accessory protein requirements and thermodynamics of acetyl-CoA synthesis and cleavage in Methanosarcina barkeri.	Grahame DA, DeMoll E.	Biochemistry	10.1021/bi00014a015	1995
Hybrid bioinorganic approach to solar-to-chemical conversion.	Nichols EM, Gallagher JJ, Liu C, Su Y, Resasco J, Yu Y, Sun Y, Yang P, Chang MC, Chang CJ.	Proc Natl Acad Sci U S A	10.1073/pnas.1508075112	2015
Catalytic properties, molecular composition and sequence alignments of pyruvate: ferredoxin oxidoreductase from the methanogenic archaeon Methanosarcina barkeri (strain Fusaro).	Bock AK, Kunow J, Glasemacher J, Schonheit P.	Eur J Biochem	10.1111/j.1432-1033.1996.0035n.x	1996
Dose-Response Effects of 3-Nitrooxypropanol Combined with Low- and High-Concentrate Feed Proportions in the Dairy Cow Ration on Fermentation Parameters in a Rumen Simulation Technique.	Schilde M, von Soosten D, Huther L, Kersten S, Meyer U, Zeyner A, Danicke S.	Animals (Basel)	10.3390/ani11061784	2021
Formate Utilization by the Crenarchaeon Desulfurococcus amylolyticus.	Ergal I, Reischl B, Hasibar B, Manoharan L, Zipperle A, Bochmann G, Fuchs W, Rittmann SKR.	Microorganisms	10.3390/microorganisms8030454	2020
Biochemical Characterization of the Methylmercaptopropionate:Cob(I)alamin Methyltransferase from Methanosarcina acetivorans.	Fu H, Goettge MN, Metcalf WW.	J Bacteriol	10.1128/jb.00130-19	2019
Graphene Facilitates Biomethane Production from Protein-Derived Glycine in Anaerobic Digestion.	Lin R, Deng C, Cheng J, Xia A, Lens PNL, Jackson SA, Dobson ADW, Murphy JD.	iScience	10.1016/j.isci.2018.11.030	2018
Tetrachloromethane-Degrading Bacterial Enrichment Cultures and Isolates from a Contaminated Aquifer.	Penny C, Gruffaz C, Nadalig T, Cauchie HM, Vuilleumier S, Bringel F.	Microorganisms	10.3390/microorganisms3030327	2015
Decrease of the hydraulic conductivity of sand columns by Methanosarcina barkeri.	Sanchez de Lozada D, Vandevivere P, Baveye P, Zinder S.	World J Microbiol Biotechnol	10.1007/bf00414873	1994
Characterizing Lysine Acetylation of Isocitrate Dehydrogenase in Escherichia coli.	Venkat S, Chen H, Stahman A, Hudson D, McGuire P, Gan Q, Fan C.	J Mol Biol	10.1016/j.jmb.2018.04.031	2018
Cas9-mediated genome editing in the methanogenic archaeon Methanosarcina acetivorans.	Nayak DD, Metcalf WW.	Proc Natl Acad Sci U S A	10.1073/pnas.1618596114	2017
Purification of a two-subunit cytochrome-b-containing heterodisulfide reductase from methanol-grown Methanosarcina barkeri.	Heiden S, Hedderich R, Setzke E, Thauer RK.	Eur J Biochem	10.1111/j.1432-1033.1994.tb18800.x	1994
Bioorthogonal protein-DNA conjugation methods for force spectroscopy.	Synakewicz M, Bauer D, Rief M, Itzhaki LS.	Sci Rep	10.1038/s41598-019-49843-1	2019
Tetramethylammonium:coenzyme M methyltransferase system from methanococcoides sp	Asakawa S, Sauer K, Liesack W, Thauer RK.	Arch Microbiol	10.1007/s002030050636	1998
Flow cytometric quantification, sorting and sequencing of methanogenic archaea based on F₄₂₀ autofluorescence.	Lambrecht J, Cichocki N, Hubschmann T, Koch C, Harms H, Muller S.	Microb Cell Fact	10.1186/s12934-017-0793-7	2017
Structure of the alpha2epsilon2 Ni-dependent CO dehydrogenase component of the Methanosarcina barkeri acetyl-CoA decarbonylase/synthase complex.	Gong W, Hao B, Wei Z, Ferguson DJ, Tallant T, Krzycki JA, Chan MK.	Proc Natl Acad Sci U S A	10.1073/pnas.0800415105	2008
Interaction of the gas vesicle proteins GvpA, GvpC, GvpN, and GvpO of Halobacterium salinarum.	Jost A, Pfeifer F.	Front Microbiol	10.3389/fmicb.2022.971917	2022
The pyrrolysine translational machinery as a genetic-code expansion tool.	Fekner T, Chan MK.	Curr Opin Chem Biol	10.1016/j.cbpa.2011.03.007	2011
Partial reactions catalyzed by protein components of the acetyl-CoA decarbonylase synthase enzyme complex from Methanosarcina barkeri.	Grahame DA, DeMoll E.	J Biol Chem	10.1074/jbc.271.14.8352	1996
Structure of the heme biosynthetic Pseudomonas aeruginosa porphobilinogen synthase in complex with the antibiotic alaremycin.	Heinemann IU, Schulz C, Schubert WD, Heinz DW, Wang YG, Kobayashi Y, Awa Y, Wachi M, Jahn D, Jahn M.	Antimicrob Agents Chemother	10.1128/aac.00553-09	2010
Interspecific, intraspecific and interoperonic variability in the 16S rRNA gene of methanogens revealed by length and single-strand conformation polymorphism analysis.	Daffonchio D, De Biase A, Rizzi A, Sorlini C.	FEMS Microbiol Lett	10.1111/j.1574-6968.1998.tb13116.x	1998
Identification of amino acids in the N-terminal domain of atypical methanogenic-type Seryl-tRNA synthetase critical for tRNA recognition.	Jaric J, Bilokapic S, Lesjak S, Crnkovic A, Ban N, Weygand-Durasevic I.	J Biol Chem	10.1074/jbc.m109.044099	2009
Genome-Guided Analysis and Whole Transcriptome Profiling of the Mesophilic Syntrophic Acetate Oxidising Bacterium Syntrophaceticus schinkii.	Manzoor S, Bongcam-Rudloff E, Schnurer A, Muller B.	PLoS One	10.1371/journal.pone.0166520	2016
Expansion of the genetic code via expansion of the genetic alphabet.	Dien VT, Morris SE, Karadeema RJ, Romesberg FE.	Curr Opin Chem Biol	10.1016/j.cbpa.2018.08.009	2018
Translation termination in pyrrolysine-utilizing archaea.	Alkalaeva E, Eliseev B, Ambrogelly A, Vlasov P, Kondrashov FA, Gundllapalli S, Frolova L, Soll D, Kisselev L.	FEBS Lett	10.1016/j.febslet.2009.09.044	2009
Comparative genomic inference suggests mixotrophic lifestyle for Thorarchaeota.	Liu Y, Zhou Z, Pan J, Baker BJ, Gu JD, Li M.	ISME J	10.1038/s41396-018-0060-x	2018
Glucose Metabolism and Acetate Switch in Archaea: the Enzymes in Haloferax volcanii.	Kuprat T, Ortjohann M, Johnsen U, Schonheit P.	J Bacteriol	10.1128/jb.00690-20	2021
Site-specific Acetylation of Histone H3 Decreases Polymerase beta Activity on Nucleosome Core Particles in Vitro.	Rodriguez Y, Hinz JM, Laughery MF, Wyrick JJ, Smerdon MJ.	J Biol Chem	10.1074/jbc.m116.725788	2016
A DNA fragment homologous to F1-ATPase beta subunit was amplified from genomic DNA of Methanosarcina barkeri. Indication of an archaebacterial F-type ATPase.	Sumi M, Sato MH, Denda K, Date T, Yoshida M.	FEBS Lett	10.1016/0014-5793(92)81472-x	1992
Electron transport in acetate-grown Methanosarcina acetivorans.	Wang M, Wang M, Tomb JF, Ferry JG.	BMC Microbiol	10.1186/1471-2180-11-165	2011
Hydrogen is a preferred intermediate in the energy-conserving electron transport chain of Methanosarcina barkeri.	Kulkarni G, Kridelbaugh DM, Guss AM, Metcalf WW.	Proc Natl Acad Sci U S A	10.1073/pnas.0905914106	2009
A pyrosequencing-based metagenomic study of methane-producing microbial community in solid-state biogas reactor.	Li A, Chu Y, Wang X, Ren L, Yu J, Liu X, Yan J, Zhang L, Wu S, Li S.	Biotechnol Biofuels	10.1186/1754-6834-6-3	2013
Branched Ubiquitination: Detection Methods, Biological Functions and Chemical Synthesis.	Wang YS, Wu KP, Jiang HK, Kurkute P, Chen RH.	Molecules	10.3390/molecules25215200	2020
Conductive Fe3O4 Nanoparticles Accelerate Syntrophic Methane Production from Butyrate Oxidation in Two Different Lake Sediments.	Zhang J, Lu Y.	Front Microbiol	10.3389/fmicb.2016.01316	2016
Synthetic riboswitches for the analysis of tRNA processing by eukaryotic RNase P enzymes.	Ender A, Grafl N, Kolberg T, Findeiss S, Stadler PF, Morl M.	RNA	10.1261/rna.078814.121	2022
Nucleotide-activated oligosaccharides are intermediates of the cell wall polysaccharide of Methanosarcina barkeri.	Hartmann E, Konig H.	Biol Chem Hoppe Seyler	10.1515/bchm3.1991.372.2.971	1991
Metabolic Potential for Reductive Acetogenesis and a Novel Energy-Converting [NiFe] Hydrogenase in Bathyarchaeia From Termite Guts - A Genome-Centric Analysis.	Loh HQ, Herve V, Brune A.	Front Microbiol	10.3389/fmicb.2020.635786	2020
Function of methylcobalamin: coenzyme M methyltransferase isoenzyme II in Methanosarcina barkeri.	Yeliseev A, Gartner P, Harms U, Linder D, Thauer RK.	Arch Microbiol	10.1007/bf00249031	1993
Calditol-linked membrane lipids are required for acid tolerance in Sulfolobus acidocaldarius.	Zeng Z, Liu XL, Wei JH, Summons RE, Welander PV.	Proc Natl Acad Sci U S A	10.1073/pnas.1814048115	2018
The physiological effect of heavy metals and volatile fatty acids on Methanococcus maripaludis S2.	Abdel Azim A, Rittmann SKR, Fino D, Bochmann G.	Biotechnol Biofuels	10.1186/s13068-018-1302-x	2018
Dehalogenation of trichlorofluoromethane (CFC-11) by Methanosarcina barkeri.	Krone UE, Thauer RK.	FEMS Microbiol Lett	10.1016/0378-1097(92)90629-3	1992
Methanococcus jannaschii coenzyme F420 analogs contain a terminal alpha-linked glutamate.	Graupner M, White RH.	J Bacteriol	10.1128/jb.185.15.4662-4665.2003	2003
CO₂ conversion to methane and biomass in obligate methylotrophic methanogens in marine sediments.	Yin X, Wu W, Maeke M, Richter-Heitmann T, Kulkarni AC, Oni OE, Wendt J, Elvert M, Friedrich MW.	ISME J	10.1038/s41396-019-0425-9	2019
A novel pathway for the biosynthesis of heme in Archaea: genome-based bioinformatic predictions and experimental evidence.	Storbeck S, Rolfes S, Raux-Deery E, Warren MJ, Jahn D, Layer G.	Archaea	10.1155/2010/175050	2010
Occurrence of D-amino acids in a few archaea and dehydrogenase activities in hyperthermophile Pyrobaculum islandicum.	Nagata Y, Tanaka K, Iida T, Kera Y, Yamada R, Nakajima Y, Fujiwara T, Fukumori Y, Yamanaka T, Koga Y, Tsuji S, Kawaguchi-Nagata K.	Biochim Biophys Acta	10.1016/s0167-4838(99)00208-3	1999
The Methanosarcina barkeri genome: comparative analysis with Methanosarcina acetivorans and Methanosarcina mazei reveals extensive rearrangement within methanosarcinal genomes.	Maeder DL, Anderson I, Brettin TS, Bruce DC, Gilna P, Han CS, Lapidus A, Metcalf WW, Saunders E, Tapia R, Sowers KR.	J Bacteriol	10.1128/jb.00810-06	2006
A SelB/EF-Tu/aIF2gamma-like protein from Methanosarcina mazei in the GTP-bound form binds cysteinyl-tRNA(Cys.).	Yanagisawa T, Ishii R, Hikida Y, Fukunaga R, Sengoku T, Sekine S, Yokoyama S.	J Struct Funct Genomics	10.1007/s10969-015-9193-6	2015
Reactivity of a paramagnetic enzyme--CO adduct in acetyl-CoA synthesis and cleavage.	Grahame DA, Khangulov S, DeMoll E.	Biochemistry	10.1021/bi9511494	1996
Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?	Kitabatake M, So MW, Tumbula DL, Soll D.	J Bacteriol	10.1128/jb.182.1.143-145.2000	2000
Effect of spatial differences in microbial activity, pH, and substrate levels on methanogenesis initiation in refuse.	Staley BF, de Los Reyes FL, Barlaz MA.	Appl Environ Microbiol	10.1128/aem.02349-10	2011
Methanobacterium thermoautotrophicum encodes two multisubunit membrane-bound [NiFe] hydrogenases. Transcription of the operons and sequence analysis of the deduced proteins.	Tersteegen A, Hedderich R.	Eur J Biochem	10.1046/j.1432-1327.1999.00692.x	1999
Early response of methanogenic archaea to H₂ as evaluated by metagenomics and metatranscriptomics.	Kakuk B, Wirth R, Maroti G, Szuhaj M, Rakhely G, Laczi K, Kovacs KL, Bagi Z.	Microb Cell Fact	10.1186/s12934-021-01618-y	2021
Methanogens in paddy rice soil	Min H, Zhao YH, Chen MC, Zhao Y.	Nutr Cycl Agroecosyst	10.1023/a:1009786803433	1997
5-Formyl-5,6,7,8-tetrahydromethanopterin is the intermediate in the process of methanogenesis in Methanosarcina barkeri.	Keltjens JT, Brugman AJ, Kesseleer JM, te Brommelstroet BW, van der Drift C, Vogels GD.	Biofactors		1992
Phenotypic and phylogenetic characterization of dominant culturable methanogens isolated from ricefield soils	Joulian C, Ollivier B, Patel BKC, Roger PA.	FEMS microbiology ecology.	10.1016/s0168-6496(97)00090-1	1998
A multienzyme complex channels substrates and electrons through acetyl-CoA and methane biosynthesis pathways in Methanosarcina.	Lieber DJ, Catlett J, Madayiputhiya N, Nandakumar R, Lopez MM, Metcalf WW, Buan NR.	PLoS One	10.1371/journal.pone.0107563	2014
Electrophysiology of the Facultative Autotrophic Bacterium Desulfosporosinus orientis.	Agostino V, Lenic A, Bardl B, Rizzotto V, Phan ANT, Blank LM, Rosenbaum MA.	Front Bioeng Biotechnol	10.3389/fbioe.2020.00457	2020
Purification of a cytochrome b containing H2:heterodisulfide oxidoreductase complex from membranes of Methanosarcina barkeri.	Heiden S, Hedderich R, Setzke E, Thauer RK.	Eur J Biochem	10.1111/j.1432-1033.1993.tb17791.x	1993
Differentiation of methanosaeta concilii and methanosarcina barkeri in anaerobic mesophilic granular sludge by fluorescent In situ hybridization and confocal scanning laser microscopy	Rocheleau S, Greer CW, Lawrence JR, Cantin C, Laramee L, Guiot SR.	Appl Environ Microbiol	10.1128/aem.65.5.2222-2229.1999	1999
Biochar Addition Increases the Rates of Dissimilatory Iron Reduction and Methanogenesis in Ferrihydrite Enrichments.	Zhou GW, Yang XR, Marshall CW, Li H, Zheng BX, Yan Y, Su JQ, Zhu YG.	Front Microbiol	10.3389/fmicb.2017.00589	2017
Mutagenesis of the C1 oxidation pathway in Methanosarcina barkeri: new insights into the Mtr/Mer bypass pathway.	Welander PV, Metcalf WW.	J Bacteriol	10.1128/jb.01424-07	2008
Reductive activation of the corrinoid-containing enzyme involved in methyl group transfer between methyl-tetrahydromethanopterin and coenzyme M in Methanosarcina barkeri.	van de Wijngaard WM, Lugtigheid RL, van der Drift C.	Antonie Van Leeuwenhoek	10.1007/bf00580434	1991
Molecular Genetic Diversity and Quantitation of Methanogen in Ruminal Fluid of Buffalo (Bubalus bubalis) Fed Ration (Wheat Straw and Concentrate Mixture Diet).	Singh KM, Tripathi AK, Pandya PR, Parnerkar S, Kothari RK, Joshi CG.	Genet Res Int	10.1155/2013/980191	2013
Photosensitive tyrosine analogues unravel site-dependent phosphorylation in TrkA initiated MAPK/ERK signaling.	Zhao S, Shi J, Yu G, Li D, Wang M, Yuan C, Zhou H, Parizadeh A, Li Z, Guan MX, Ye S.	Commun Biol	10.1038/s42003-020-01396-0	2020
Development of a flow-fluorescence in situ hybridization protocol for the analysis of microbial communities in anaerobic fermentation liquor.	Nettmann E, Frohling A, Heeg K, Klocke M, Schluter O, Mumme J.	BMC Microbiol	10.1186/1471-2180-13-278	2013
3'-5' tRNAHis guanylyltransferase in bacteria.	Heinemann IU, Randau L, Tomko RJ, Soll D.	FEBS Lett	10.1016/j.febslet.2010.07.023	2010
Purification and properties of the heme- and iron-sulfur-containing heterodisulfide reductase from Methanosarcina thermophila.	Simianu M, Murakami E, Brewer JM, Ragsdale SW.	Biochemistry	10.1021/bi9726483	1998
Purification and properties of 5,10-methylenetetrahydromethanopterin dehydrogenase and 5,10-methylenetetrahydromethanopterin reductase, two coenzyme F420-dependent enzymes, from Methanosarcina barkeri.	te Brommelstroet BW, Geerts WJ, Keltjens JT, van der Drift C, Vogels GD.	Biochim Biophys Acta	10.1016/0167-4838(91)90072-8	1991
Ammonia assimilation and glutamate incorporation in coenzyme F420 derivatives of Methanosarcina barkeri.	Raemakers-Franken PC, Brand RJ, Kortstee AJ, Van der Drift C, Vogels GD.	Antonie Van Leeuwenhoek	10.1007/bf00583677	1991
Thiol:fumarate reductase (Tfr) from Methanobacterium thermoautotrophicum--identification of the catalytic sites for fumarate reduction and thiol oxidation.	Heim S, Kunkel A, Thauer RK, Hedderich R.	Eur J Biochem	10.1046/j.1432-1327.1998.2530292.x	1998
The complete biosynthesis of the genetically encoded amino acid pyrrolysine from lysine.	Gaston MA, Zhang L, Green-Church KB, Krzycki JA.	Nature	10.1038/nature09918	2011
Archaebiotics: proposed therapeutic use of archaea to prevent trimethylaminuria and cardiovascular disease.	Brugere JF, Borrel G, Gaci N, Tottey W, O'Toole PW, Malpuech-Brugere C.	Gut Microbes	10.4161/gmic.26749	2014
Tracing the Repertoire of Promiscuous Enzymes along the Metabolic Pathways in Archaeal Organisms.	Martinez-Nunez MA, Rodriguez-Escamilla Z, Rodriguez-Vazquez K, Perez-Rueda E.	Life (Basel)	10.3390/life7030030	2017
The MttB superfamily member MtyB from the human gut symbiont Eubacterium limosum is a cobalamin-dependent gamma-butyrobetaine methyltransferase.	Ellenbogen JB, Jiang R, Kountz DJ, Zhang L, Krzycki JA.	J Biol Chem	10.1016/j.jbc.2021.101327	2021
Overproduction and one-step purification of the N5,N10-methenyltetrahydromethanopterin cyclohydrolase (Mch) from the hyperthermophilic Methanopyrus kandleri.	Vaupel M, Vorholt JA, Thauer RK.	Extremophiles	10.1007/s007920050038	1998
Glycine betaine as a direct substrate for methanogens (Methanococcoides spp.).	Watkins AJ, Roussel EG, Parkes RJ, Sass H.	Appl Environ Microbiol	10.1128/aem.03076-13	2014
Structural basis for the site-specific incorporation of lysine derivatives into proteins.	Flugel V, Vrabel M, Schneider S.	PLoS One	10.1371/journal.pone.0096198	2014
Methanosarcina acetivorans contains a functional ISC system for iron-sulfur cluster biogenesis.	Deere TM, Prakash D, Lessner FH, Duin EC, Lessner DJ.	BMC Microbiol	10.1186/s12866-020-02014-z	2020
Mechanisms for Electron Uptake by Methanosarcina acetivorans during Direct Interspecies Electron Transfer.	Holmes DE, Zhou J, Ueki T, Woodard T, Lovley DR.	mBio	10.1128/mbio.02344-21	2021
Genome annotation provides insight into carbon monoxide and hydrogen metabolism in Rubrivivax gelatinosus.	Wawrousek K, Noble S, Korlach J, Chen J, Eckert C, Yu J, Maness PC.	PLoS One	10.1371/journal.pone.0114551	2014
Formylmethanofuran: tetrahydromethanopterin formyltransferase from Methanosarcina barkeri. Identification of N5-formyltetrahydromethanopterin as the product.	Breitung J, Thauer RK.	FEBS Lett	10.1016/0014-5793(90)81477-6	1990
Ferredoxin-dependent methane formation from acetate in cell extracts of Methanosarcina barkeri (strain MS).	Fischer R, Thauer RK.	FEBS Lett	10.1016/0014-5793(90)81195-t	1990
Molecular studies on an ancient gene encoding for carbamoyl-phosphate synthetase.	Schofield JP.	Clin Sci (Lond)	10.1042/cs0840119	1993
Nucleotide sequence of nifH regions from Methanobacterium ivanovii and Methanosarcina barkeri 227 and characterization of glnB-like genes.	Sibold L, Henriquet M, Possot O, Aubert JP.	Res Microbiol	10.1016/0923-2508(91)90091-n	1991
pH and Phosphate Induced Shifts in Carbon Flow and Microbial Community during Thermophilic Anaerobic Digestion.	Lackner N, Wagner AO, Markt R, Illmer P.	Microorganisms	10.3390/microorganisms8020286	2020
Sulfate Alters the Competition Among Microbiome Members of Sediments Chronically Exposed to Asphalt.	Michas A, Harir M, Lucio M, Vestergaard G, Himmelberg A, Schmitt-Kopplin P, Lueders T, Hatzinikolaou DG, Scholer A, Rabus R, Schloter M.	Front Microbiol	10.3389/fmicb.2020.556793	2020
Non-canonical Amino Acid Substrates of E. coli Aminoacyl-tRNA Synthetases.	Hartman MCT.	Chembiochem	10.1002/cbic.202100299	2022
Pyrrolysyl-tRNA synthetase variants reveal ancestral aminoacylation function.	Ko JH, Wang YS, Nakamura A, Guo LT, Soll D, Umehara T.	FEBS Lett	10.1016/j.febslet.2013.08.018	2013
Designing efficient genetic code expansion in Bacillus subtilis to gain biological insights.	Stork DA, Squyres GR, Kuru E, Gromek KA, Rittichier J, Jog A, Burton BM, Church GM, Garner EC, Kunjapur AM.	Nat Commun	10.1038/s41467-021-25691-4	2021
The structure, function and properties of sirohaem decarboxylase--an enzyme with structural homology to a transcription factor family that is part of the alternative haem biosynthesis pathway.	Palmer DJ, Schroeder S, Lawrence AD, Deery E, Lobo SA, Saraiva LM, McLean KJ, Munro AW, Ferguson SJ, Pickersgill RW, Brown DG, Warren MJ.	Mol Microbiol	10.1111/mmi.12656	2014
Formylmethanofuran dehydrogenases from methanogenic Archaea. Substrate specificity, EPR properties and reversible inactivation by cyanide of the molybdenum or tungsten iron-sulfur proteins.	Bertram PA, Karrasch M, Schmitz RA, Bocher R, Albracht SP, Thauer RK.	Eur J Biochem	10.1111/j.1432-1033.1994.tb18646.x	1994
High Rate Biomethanation of Carbon Monoxide-Rich Gases via a Thermophilic Synthetic Coculture.	Diender M, Uhl PS, Bitter JH, Stams AJM, Sousa DZ.	ACS Sustain Chem Eng	10.1021/acssuschemeng.7b03601	2018
Methanogenic archaea and sulfate reducing bacteria co-cultured on acetate: teamwork or coexistence?	Ozuolmez D, Na H, Lever MA, Kjeldsen KU, Jorgensen BB, Plugge CM.	Front Microbiol	10.3389/fmicb.2015.00492	2015
Inhibition of methanogens by n- and iso-volatile fatty acids.	Hajarnis SR, Ranade DR.	World J Microbiol Biotechnol	10.1007/bf00414879	1994
The molybdenum cofactor of formylmethanofuran dehydrogenase from Methanosarcina barkeri is a molybdopterin guanine dinucleotide.	Karrasch M, Borner G, Thauer RK.	FEBS Lett	10.1016/0014-5793(90)81326-j	1990
Limiting habenular hyperactivity ameliorates maternal separation-driven depressive-like symptoms.	Tchenio A, Lecca S, Valentinova K, Mameli M.	Nat Commun	10.1038/s41467-017-01192-1	2017
tRNA Modification Profiles and Codon-Decoding Strategies in Methanocaldococcus jannaschii.	Yu N, Jora M, Solivio B, Thakur P, Acevedo-Rocha CG, Randau L, de Crecy-Lagard V, Addepalli B, Limbach PA.	J Bacteriol	10.1128/jb.00690-18	2019
Qualitative Analysis of Microbial Dynamics during Anaerobic Digestion of Microalgal Biomass in a UASB Reactor.	Doloman A, Soboh Y, Walters AJ, Sims RC, Miller CD.	Int J Microbiol	10.1155/2017/5291283	2017
A semi-synthetic organism that stores and retrieves increased genetic information.	Zhang Y, Ptacin JL, Fischer EC, Aerni HR, Caffaro CE, San Jose K, Feldman AW, Turner CR, Romesberg FE.	Nature	10.1038/nature24659	2017
Substrate and cofactor reactivity of a carbon monoxide dehydrogenase-corrinoid enzyme complex: stepwise reduction of iron-sulfur and corrinoid centers, the corrinoid Co2+/1+ redox midpoint potential, and overall synthesis of acetyl-CoA.	Grahame DA.	Biochemistry	10.1021/bi00091a033	1993
Air-adapted Methanosarcina acetivorans shows high methane production and develops resistance against oxygen stress.	Jasso-Chavez R, Santiago-Martinez MG, Lira-Silva E, Pineda E, Zepeda-Rodriguez A, Belmont-Diaz J, Encalada R, Saavedra E, Moreno-Sanchez R.	PLoS One	10.1371/journal.pone.0117331	2015
Effect of proximal ligand substitutions on the carbene and nitrene transferase activity of myoglobin.	Moore EJ, Fasan R.	Tetrahedron	10.1016/j.tet.2019.03.009	2019
An evolutionary approach to systematic discovery of novel deubiquitinases, applied to Legionella.	Hermanns T, Woiwode I, Guerreiro RF, Vogt R, Lammers M, Hofmann K.	Life Sci Alliance	10.26508/lsa.202000838	2020
The molybdoenzyme formylmethanofuran dehydrogenase from Methanosarcina barkeri contains a pterin cofactor.	Karrasch M, Borner G, Enssle M, Thauer RK.	Eur J Biochem	10.1111/j.1432-1033.1990.tb15627.x	1990
Evolutionary History of the Photolyase/Cryptochrome Superfamily in Eukaryotes.	Mei Q, Dvornyk V.	PLoS One	10.1371/journal.pone.0135940	2015
Expanding the substrate scope of pyrrolysyl-transfer RNA synthetase enzymes to include non-alpha-amino acids in vitro and in vivo.	Fricke R, Swenson CV, Roe LT, Hamlish NX, Shah B, Zhang Z, Ficaretta E, Ad O, Smaga S, Gee CL, Chatterjee A, Schepartz A.	Nat Chem	10.1038/s41557-023-01224-y	2023
Hydroxyarchaetidylserine and hydroxyarchaetidyl-myo-inositol in Methanosarcina barkeri: polar lipids with a new ether core portion.	Nishihara M, Koga Y.	Biochim Biophys Acta	10.1016/0005-2760(91)90196-o	1991
Examination of the Glycine Betaine-Dependent Methylotrophic Methanogenesis Pathway: Insights Into Anaerobic Quaternary Amine Methylotrophy.	Creighbaum AJ, Ticak T, Shinde S, Wang X, Ferguson DJ.	Front Microbiol	10.3389/fmicb.2019.02572	2019
Production of Citrate by Anaerobic Fungi in the Presence of Co-culture Methanogens as Revealed by (1)H NMR Spectrometry.	Cheng YF, Jin W, Mao SY, Zhu WY.	Asian-Australas J Anim Sci	10.5713/ajas.2013.13134	2013
Xenomicrobiology: a roadmap for genetic code engineering.	Acevedo-Rocha CG, Budisa N.	Microb Biotechnol	10.1111/1751-7915.12398	2016
Biofilm Biology and Engineering of Geobacter and Shewanella spp. for Energy Applications.	Hu Y, Wang Y, Han X, Shan Y, Li F, Shi L.	Front Bioeng Biotechnol	10.3389/fbioe.2021.786416	2021
Conformational study of the chromosomal protein MC1 from the archaebacterium Methanosarcina barkeri.	Imbert M, Laine B, Helbecque N, Mornon JP, Henichart JP, Sautiere P.	Biochim Biophys Acta	10.1016/0167-4838(90)90247-d	1990
Crystal structure of methylenetetrahydromethanopterin reductase (Mer) in complex with coenzyme F420: Architecture of the F420/FMN binding site of enzymes within the nonprolyl cis-peptide containing bacterial luciferase family.	Aufhammer SW, Warkentin E, Ermler U, Hagemeier CH, Thauer RK, Shima S.	Protein Sci	10.1110/ps.041289805	2005
Structures and activities of archaeal members of the LigD 3'-phosphoesterase DNA repair enzyme superfamily.	Smith P, Nair PA, Das U, Zhu H, Shuman S.	Nucleic Acids Res	10.1093/nar/gkq1163	2011
Ferritin Conjugates With Multiple Clickable Amino Acids Encoded by C-Terminal Engineered Pyrrolysyl-tRNA Synthetase.	Wang YH, Jian ML, Chen PJ, Tsou JC, Truong LP, Wang YS.	Front Chem	10.3389/fchem.2021.779976	2021
Top-down proteomics reveals novel protein forms expressed in Methanosarcina acetivorans.	Ferguson JT, Wenger CD, Metcalf WW, Kelleher NL.	J Am Soc Mass Spectrom	10.1016/j.jasms.2009.05.014	2009
Metabolic Modeling Elucidates the Transactions in the Rumen Microbiome and the Shifts Upon Virome Interactions.	Islam MM, Fernando SC, Saha R.	Front Microbiol	10.3389/fmicb.2019.02412	2019
Archaea contain a novel diether phosphoglycolipid with a polar head group identical to the conserved core of eucaryal glycosyl phosphatidylinositol.	Nishihara M, Utagawa M, Akutsu H, Koga Y.	J Biol Chem	10.1016/s0021-9258(18)42294-6	1992
Dicyclohexylcarbodiimide-binding protein is a subunit of the Methanosarcina barkeri ATPase complex.	Inatomi K, Maeda M, Futai M.	Biochem Biophys Res Commun	10.1016/0006-291x(89)90856-5	1989
Different isozymes of methylcobalamin:2-mercaptoethanesulfonate methyltransferase predominate in methanol- versus acetate-grown Methanosarcina barkeri.	Grahame DA.	J Biol Chem	10.1016/s0021-9258(18)51571-4	1989
Molecular Hydrogen, a Neglected Key Driver of Soil Biogeochemical Processes.	Piche-Choquette S, Constant P.	Appl Environ Microbiol	10.1128/aem.02418-18	2019
Redox-dependent complex formation by an ATP-dependent activator of the corrinoid/iron-sulfur protein.	Hennig SE, Jeoung JH, Goetzl S, Dobbek H.	Proc Natl Acad Sci U S A	10.1073/pnas.1117126109	2012
Distinct Modified Nucleosides in tRNA^Trp from the Hyperthermophilic Archaeon Thermococcus kodakarensis and Requirement of tRNA m²G10/m²₂G10 Methyltransferase (Archaeal Trm11) for Survival at High Temperatures.	Hirata A, Suzuki T, Nagano T, Fujii D, Okamoto M, Sora M, Lowe TM, Kanai T, Atomi H, Suzuki T, Hori H.	J Bacteriol	10.1128/jb.00448-19	2019
The argG gene of Streptomyces clavuligerus has low homology to unstable argG from other actinomycetes: effect of amplification on clavulanic acid biosynthesis.	Rodriguez-Garcia A, Martin JF, Liras P.	Gene	10.1016/0378-1119(95)00667-2	1995
Purification of the F420-reducing hydrogenase from Methanosarcina barkeri (strain Fusaro).	Fiebig K, Friedrich B.	Eur J Biochem	10.1111/j.1432-1033.1989.tb14992.x	1989
Optical control of MAP kinase kinase 6 (MKK6) reveals that it has divergent roles in pro-apoptotic and anti-proliferative signaling.	Rahman SMT, Zhou W, Deiters A, Haugh JM.	J Biol Chem	10.1074/jbc.ra119.012079	2020
Genome-scale metabolic model analysis indicates low energy production efficiency in marine ammonia-oxidizing archaea.	Li F, Xie W, Yuan Q, Luo H, Li P, Chen T, Zhao X, Wang Z, Ma H.	AMB Express	10.1186/s13568-018-0635-y	2018
Designer tRNAs for efficient incorporation of non-canonical amino acids by the pyrrolysine system in mammalian cells.	Serfling R, Lorenz C, Etzel M, Schicht G, Bottke T, Morl M, Coin I.	Nucleic Acids Res	10.1093/nar/gkx1156	2018
The GC Content as a Main Factor Shaping the Amino Acid Usage During Bacterial Evolution Process.	Du MZ, Zhang C, Wang H, Liu S, Wei W, Guo FB.	Front Microbiol	10.3389/fmicb.2018.02948	2018
Pseudomonas spp. are key players in agricultural biogas substrate degradation.	Buettner C, von Bergen M, Jehmlich N, Noll M.	Sci Rep	10.1038/s41598-019-49313-8	2019
Growth and Product Formation of Clostridium ljungdahlii in Presence of Cyanide.	Oswald F, Zwick M, Omar O, Hotz EN, Neumann A.	Front Microbiol	10.3389/fmicb.2018.01213	2018
Paramagnetic centers of carbon monoxide dehydrogenase from aceticlastic Methanosarcina barkeri.	Krzycki JA, Mortenson LE, Prince RC.	J Biol Chem	10.1016/s0021-9258(18)83223-9	1989
An intertwined evolutionary history of methanogenic archaea and sulfate reduction.	Susanti D, Mukhopadhyay B.	PLoS One	10.1371/journal.pone.0045313	2012
Noncanonical Amino Acids in Biocatalysis.	Birch-Price Z, Hardy FJ, Lister TM, Kohn AR, Green AP.	Chem Rev	10.1021/acs.chemrev.4c00120	2024
Catalysis of acetyl-CoA cleavage and tetrahydrosarcinapterin methylation by a carbon monoxide dehydrogenase-corrinoid enzyme complex.	Grahame DA.	J Biol Chem	10.1016/s0021-9258(18)54558-0	1991
Pyrrolysine is not hardwired for cotranslational insertion at UAG codons.	Ambrogelly A, Gundllapalli S, Herring S, Polycarpo C, Frauer C, Soll D.	Proc Natl Acad Sci U S A	10.1073/pnas.0611634104	2007
Unleashing hydrogenase activity in carbon monoxide dehydrogenase/acetyl-CoA synthase and pyruvate:ferredoxin oxidoreductase.	Menon S, Ragsdale SW.	Biochemistry	10.1021/bi9615598	1996
Plant Litter Type Dictates Microbial Communities Responsible for Greenhouse Gas Production in Amended Lake Sediments.	Yakimovich KM, Emilson EJS, Carson MA, Tanentzap AJ, Basiliko N, Mykytczuk NCS.	Front Microbiol	10.3389/fmicb.2018.02662	2018
Coenzyme F₄₂₀-Dependent Glucose-6-Phosphate Dehydrogenase-Coupled Polyglutamylation of Coenzyme F₄₂₀ in Mycobacteria.	Purwantini E, Loganathan U, Mukhopadhyay B.	J Bacteriol	10.1128/jb.00375-18	2018
An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.	Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D.	Proc Natl Acad Sci U S A	10.1073/pnas.0405362101	2004
Comparative Proteomics of Rubber Latex Revealed Multiple Protein Species of REF/SRPP Family Respond Diversely to Ethylene Stimulation among Different Rubber Tree Clones.	Tong Z, Wang D, Sun Y, Yang Q, Meng X, Wang L, Feng W, Li L, Wurtele ES, Wang X.	Int J Mol Sci	10.3390/ijms18050958	2017
Linker and N-Terminal Domain Engineering of Pyrrolysyl-tRNA Synthetase for Substrate Range Shifting and Activity Enhancement.	Jiang HK, Lee MN, Tsou JC, Chang KW, Tseng HW, Chen KP, Li YK, Wang YS.	Front Bioeng Biotechnol	10.3389/fbioe.2020.00235	2020
New methods for tightly regulated gene expression and highly efficient chromosomal integration of cloned genes for Methanosarcina species.	Guss AM, Rother M, Zhang JK, Kulkarni G, Metcalf WW.	Archaea	10.1155/2008/534081	2008
Reductive dechlorination of 1,2-dichloroethane and chloroethane by cell suspensions of methanogenic bacteria.	Holliger C, Schraa G, Stams AJ, Zehnder AJ.	Biodegradation	10.1007/bf00119762	1990
Phototriggered protein syntheses by using (7-diethylaminocoumarin-4-yl)methoxycarbonyl-caged aminoacyl tRNAs.	Ohtsuki T, Kanzaki S, Nishimura S, Kunihiro Y, Sisido M, Watanabe K.	Nat Commun	10.1038/ncomms12501	2016
Designing logical codon reassignment - Expanding the chemistry in biology.	Dumas A, Lercher L, Spicer CD, Davis BG.	Chem Sci	10.1039/c4sc01534g	2015
Ethane production by Methanosarcina barkeri during growth in ethanol supplemented medium.	Belay N, Daniels L.	Antonie Van Leeuwenhoek	10.1007/bf00419199	1988
Estimation of methanogen biomass by quantitation of coenzyme M.	Elias DA, Krumholz LR, Tanner RS, Suflita JM.	Appl Environ Microbiol	10.1128/aem.65.12.5541-5545.1999	1999
Crystallization and preliminary X-ray crystallographic analysis of the catalytic domain of pyrrolysyl-tRNA synthetase from the methanogenic archaeon Methanosarcina mazei.	Yanagisawa T, Ishii R, Fukunaga R, Nureki O, Yokoyama S.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309106036700	2006
Electron-transport-driven sodium extrusion during methanogenesis from formaldehyde and molecular hydrogen by Methanosarcina barkeri.	Muller V, Winner C, Gottschalk G.	Eur J Biochem	10.1111/j.1432-1033.1988.tb14478.x	1988
Proton translocation coupled to the oxidation of carbon monoxide to CO2 and H2 in Methanosarcina barkeri.	Bott M, Thauer RK.	Eur J Biochem	10.1111/j.1432-1033.1989.tb14576.x	1989
Examining Pathways of Iron and Sulfur Acquisition, Trafficking, Deployment, and Storage in Mineral-Grown Methanogen Cells.	Payne D, Shepard EM, Spietz RL, Steward K, Brumfield S, Young M, Bothner B, Broderick WE, Broderick JB, Boyd ES.	J Bacteriol	10.1128/jb.00146-21	2021
Mass spectrometry defines the stoichiometry of ribosomal stalk complexes across the phylogenetic tree.	Gordiyenko Y, Videler H, Zhou M, McKay AR, Fucini P, Biegel E, Muller V, Robinson CV.	Mol Cell Proteomics	10.1074/mcp.m000072-mcp201	2010
Methanobacterium formicicum as a target rumen methanogen for the development of new methane mitigation interventions: A review.	Chellapandi P, Bharathi M, Sangavai C, Prathiviraj R.	Vet Anim Sci	10.1016/j.vas.2018.09.001	2018
Amino acid sequence of the alpha and beta subunits of Methanosarcina barkeri ATPase deduced from cloned genes. Similarity to subunits of eukaryotic vacuolar and F0F1-ATPases.	Inatomi K, Eya S, Maeda M, Futai M.	J Biol Chem	10.1016/s0021-9258(18)60411-9	1989
Comparative analysis of the methanogen diversity in horse and pony by using mcrA gene and archaeal 16s rRNA gene clone libraries.	Lwin KO, Matsui H.	Archaea	10.1155/2014/483574	2014
Non-Standard Genetic Codes Define New Concepts for Protein Engineering.	Bezerra AR, Guimaraes AR, Santos MA.	Life (Basel)	10.3390/life5041610	2015
Electron transfer ferredoxins with unusual cluster binding motifs support secondary metabolism in many bacteria.	Child SA, Bradley JM, Pukala TL, Svistunenko DA, Le Brun NE, Bell SG.	Chem Sci	10.1039/c8sc01286e	2018
The genome characteristics and predicted function of methyl-group oxidation pathway in the obligate aceticlastic methanogens, Methanosaeta spp.	Zhu J, Zheng H, Ai G, Zhang G, Liu D, Liu X, Dong X.	PLoS One	10.1371/journal.pone.0036756	2012
Comparison of enteric methane yield and diversity of ruminal methanogens in cattle and buffaloes fed on the same diet.	Malik PK, Trivedi S, Mohapatra A, Kolte AP, Sejian V, Bhatta R, Rahman H.	PLoS One	10.1371/journal.pone.0256048	2021
Methane-Fueled Syntrophy through Extracellular Electron Transfer: Uncovering the Genomic Traits Conserved within Diverse Bacterial Partners of Anaerobic Methanotrophic Archaea.	Skennerton CT, Chourey K, Iyer R, Hettich RL, Tyson GW, Orphan VJ.	mBio	10.1128/mbio.00530-17	2017
A Ferredoxin- and F420H2-Dependent, Electron-Bifurcating, Heterodisulfide Reductase with Homologs in the Domains Bacteria and Archaea.	Yan Z, Wang M, Ferry JG.	mBio	10.1128/mbio.02285-16	2017
Functional interactions between posttranslationally modified amino acids of methyl-coenzyme M reductase in Methanosarcina acetivorans.	Nayak DD, Liu A, Agrawal N, Rodriguez-Carerro R, Dong SH, Mitchell DA, Nair SK, Metcalf WW.	PLoS Biol	10.1371/journal.pbio.3000507	2020
An insight into the bioelectrochemical photoreduction of CO₂ to value-added chemicals.	Gupta P, Noori MT, Nunez AE, Verma N.	iScience	10.1016/j.isci.2021.102294	2021
Molecular, genetic, and biochemical characterization of the serC gene of Methanosarcina barkeri Fusaro.	Metcalf WW, Zhang JK, Shi X, Wolfe RS.	J Bacteriol	10.1128/jb.178.19.5797-5802.1996	1996
Site-specific encoding of photoactivity and photoreactivity into antibody fragments.	Bridge T, Wegmann U, Crack JC, Orman K, Shaikh SA, Farndon W, Martins C, Saalbach G, Sachdeva A.	Nat Chem Biol	10.1038/s41589-022-01251-9	2023
The transmembrane electrochemical gradient of Na+ as driving force for methanol oxidation in Methanosarcina barkeri.	Muller V, Blaut M, Gottschalk G.	Eur J Biochem	10.1111/j.1432-1033.1988.tb13931.x	1988
Analysis of genes encoding an alternative nitrogenase in the archaeon Methanosarcina barkeri 227.	Chien YT, Auerbuch V, Brabban AD, Zinder SH.	J Bacteriol	10.1128/jb.182.11.3247-3253.2000	2000
Conformational transition of FGFR kinase activation revealed by site-specific unnatural amino acid reporter and single molecule FRET.	Perdios L, Lowe AR, Saladino G, Bunney TD, Thiyagarajan N, Alexandrov Y, Dunsby C, French PM, Chin JW, Gervasio FL, Tate EW, Katan M.	Sci Rep	10.1038/srep39841	2017
Computational Aminoacyl-tRNA Synthetase Library Design for Photocaged Tyrosine.	Baumann T, Hauf M, Richter F, Albers S, Moglich A, Ignatova Z, Budisa N.	Int J Mol Sci	10.3390/ijms20092343	2019
Genomic characterization of methanomicrobiales reveals three classes of methanogens.	Anderson I, Ulrich LE, Lupa B, Susanti D, Porat I, Hooper SD, Lykidis A, Sieprawska-Lupa M, Dharmarajan L, Goltsman E, Lapidus A, Saunders E, Han C, Land M, Lucas S, Mukhopadhyay B, Whitman WB, Woese C, Bristow J, Kyrpides N.	PLoS One	10.1371/journal.pone.0005797	2009
Chemically-defined lactose-based autoinduction medium for site-specific incorporation of non-canonical amino acids into proteins.	Muzika M, Muskat NH, Sarid S, Ben-David O, Mehl RA, Arbely E.	RSC Adv	10.1039/c8ra04359k	2018
Chromosomal replication dynamics and interaction with the beta sliding clamp determine orientation of bacterial transposable elements.	Gomez MJ, Diaz-Maldonado H, Gonzalez-Tortuero E, Lopez de Saro FJ.	Genome Biol Evol	10.1093/gbe/evu052	2014
Genetically encoded optochemical probes for simultaneous fluorescence reporting and light activation of protein function with two-photon excitation.	Luo J, Uprety R, Naro Y, Chou C, Nguyen DP, Chin JW, Deiters A.	J Am Chem Soc	10.1021/ja5055862	2014
Metagenomic sequencing of marine periphyton: taxonomic and functional insights into biofilm communities.	Sanli K, Bengtsson-Palme J, Nilsson RH, Kristiansson E, Alm Rosenblad M, Blanck H, Eriksson KM.	Front Microbiol	10.3389/fmicb.2015.01192	2015
Isolation of acetogenic bacteria that induce biocorrosion by utilizing metallic iron as the sole electron donor.	Kato S, Yumoto I, Kamagata Y.	Appl Environ Microbiol	10.1128/aem.02767-14	2015
Generation of a transmembrane gradient of Na+ in Methanosarcina barkeri.	Muller V, Blaut M, Gottschalk G.	Eur J Biochem	10.1111/j.1432-1033.1987.tb10624.x	1987
Emerging Methods for Efficient and Extensive Incorporation of Non-canonical Amino Acids Using Cell-Free Systems.	Wu Y, Wang Z, Qiao X, Li J, Shu X, Qi H.	Front Bioeng Biotechnol	10.3389/fbioe.2020.00863	2020
Structures of the sulfite detoxifying F₄₂₀-dependent enzyme from Methanococcales.	Jespersen M, Pierik AJ, Wagner T.	Nat Chem Biol	10.1038/s41589-022-01232-y	2023
Allosteric histidine switch for regulation of intracellular zinc(II) fluctuation.	Zhu R, Song Y, Liu H, Yang Y, Wang S, Yi C, Chen PR.	Proc Natl Acad Sci U S A	10.1073/pnas.1708563115	2017
Insight into the mechanism of biological methanol activation based on the crystal structure of the methanol-cobalamin methyltransferase complex.	Hagemeier CH, Krer M, Thauer RK, Warkentin E, Ermler U.	Proc Natl Acad Sci U S A	10.1073/pnas.0603650103	2006
Synthesis of non-linear protein dimers through a genetically encoded Thiol-ene reaction.	Torres-Kolbus J, Chou C, Liu J, Deiters A.	PLoS One	10.1371/journal.pone.0105467	2014
Stoichiometric capacitance reveals the theoretical capabilities of metabolic networks.	Larhlimi A, Basler G, Grimbs S, Selbig J, Nikoloski Z.	Bioinformatics	10.1093/bioinformatics/bts381	2012
Metabolic reconstruction of the archaeon methanogen Methanosarcina Acetivorans.	Satish Kumar V, Ferry JG, Maranas CD.	BMC Syst Biol	10.1186/1752-0509-5-28	2011
Atypical archaeal tRNA pyrrolysine transcript behaves towards EF-Tu as a typical elongator tRNA.	Theobald-Dietrich A, Frugier M, Giege R, Rudinger-Thirion J.	Nucleic Acids Res	10.1093/nar/gkh266	2004
The impact of Cystic Fibrosis Transmembrane Regulator Disruption on cardiac function and stress response.	Jiang K, Jiao S, Vitko M, Darrah R, Flask CA, Hodges CA, Yu X.	J Cyst Fibros	10.1016/j.jcf.2015.06.003	2016
Differential in vitro methylation and synthesis of the 480-kilodalton corrinoid protein in Methanosarcina barkeri grown on different substrates.	Kremer J, Burchfield S, Frazier C, Krzycki J.	J Bacteriol	10.1128/jb.176.1.253-255.1994	1994
Chimeric design of pyrrolysyl-tRNA synthetase/tRNA pairs and canonical synthetase/tRNA pairs for genetic code expansion.	Ding W, Zhao H, Chen Y, Zhang B, Yang Y, Zang J, Wu J, Lin S.	Nat Commun	10.1038/s41467-020-16898-y	2020
Homologs of aminoacyl-tRNA synthetases acylate carrier proteins and provide a link between ribosomal and nonribosomal peptide synthesis.	Mocibob M, Ivic N, Bilokapic S, Maier T, Luic M, Ban N, Weygand-Durasevic I.	Proc Natl Acad Sci U S A	10.1073/pnas.1007470107	2010
Primary structure of the chromosomal protein HMb from the archaebacteria Methanosarcina barkeri.	Laine B, Chartier F, Imbert M, Lewis R, Sautiere P.	Eur J Biochem	10.1111/j.1432-1033.1986.tb10493.x	1986
Investigations of two bidirectional carbon monoxide dehydrogenases from Carboxydothermus hydrogenoformans by protein film electrochemistry.	Wang VC, Ragsdale SW, Armstrong FA.	Chembiochem	10.1002/cbic.201300270	2013
Structure of a methanofuran derivative found in cell extracts of Methanosarcina barkeri.	Bobik TA, Donnelly MI, Rinehart KL, Wolfe RS.	Arch Biochem Biophys	10.1016/0003-9861(87)90121-4	1987
Simple sequence repeats in prokaryotic genomes.	Mrazek J, Guo X, Shah A.	Proc Natl Acad Sci U S A	10.1073/pnas.0702412104	2007
Analysis of human acetylation stoichiometry defines mechanistic constraints on protein regulation.	Hansen BK, Gupta R, Baldus L, Lyon D, Narita T, Lammers M, Choudhary C, Weinert BT.	Nat Commun	10.1038/s41467-019-09024-0	2019
Co-existence of Methanogenesis and Sulfate Reduction with Common Substrates in Sulfate-Rich Estuarine Sediments.	Sela-Adler M, Ronen Z, Herut B, Antler G, Vigderovich H, Eckert W, Sivan O.	Front Microbiol	10.3389/fmicb.2017.00766	2017
Effects of using coding potential, sequence conservation and mRNA structure conservation for predicting pyrrolysine containing genes.	Theil Have C, Zambach S, Christiansen H.	BMC Bioinformatics	10.1186/1471-2105-14-118	2013
Site-specific acylation of a bacterial virulence regulator attenuates infection.	Zhang ZJ, Pedicord VA, Peng T, Hang HC.	Nat Chem Biol	10.1038/s41589-019-0392-5	2020
Genome analysis and heterologous expression of acetate-activating enzymes in the anammox bacterium Kuenenia stuttgartiensis.	Russ L, Harhangi HR, Schellekens J, Verdellen B, Kartal B, Op den Camp HJ, Jetten MS.	Arch Microbiol	10.1007/s00203-012-0829-7	2012
sn-glycerol-1-phosphate-forming activities in Archaea: separation of archaeal phospholipid biosynthesis and glycerol catabolism by glycerophosphate enantiomers.	Nishihara M, Yamazaki T, Oshima T, Koga Y.	J Bacteriol	10.1128/jb.181.4.1330-1333.1999	1999
A Chemical Proteomics Approach to Reveal Direct Protein-Protein Interactions in Living Cells.	Kleiner RE, Hang LE, Molloy KR, Chait BT, Kapoor TM.	Cell Chem Biol	10.1016/j.chembiol.2017.10.001	2018
A phylogenetic and proteomic reconstruction of eukaryotic chromatin evolution.	Grau-Bove X, Navarrete C, Chiva C, Pribasnig T, Anto M, Torruella G, Galindo LJ, Lang BF, Moreira D, Lopez-Garcia P, Ruiz-Trillo I, Schleper C, Sabido E, Sebe-Pedros A.	Nat Ecol Evol	10.1038/s41559-022-01771-6	2022
Purification and enzymic characterization of the cytoplasmic pyrophosphatase from the thermoacidophilic archaebacterium Thermoplasma acidophilum.	Richter OM, Schafer G.	Eur J Biochem	10.1111/j.1432-1033.1992.tb17295.x	1992
Crystallization and preliminary X-ray crystallographic analysis of bacterial tRNA(Sec) in complex with seryl-tRNA synthetase.	Itoh Y, Sekine SI, Yokoyama S.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309112016004	2012
Methanogenic pathways in Methanosphaera stadtmanae.	van de Wijngaard WM, Creemers J, Vogels GD, van der Drift C.	FEMS Microbiol Lett	10.1016/0378-1097(91)90596-3	1991
Structure of the unusual seryl-tRNA synthetase reveals a distinct zinc-dependent mode of substrate recognition.	Bilokapic S, Maier T, Ahel D, Gruic-Sovulj I, Soll D, Weygand-Durasevic I, Ban N.	EMBO J	10.1038/sj.emboj.7601129	2006
Geobacter Dominates the Inner Layers of a Stratified Biofilm on a Fluidized Anode During Brewery Wastewater Treatment.	Tejedor-Sanz S, Fernandez-Labrador P, Hart S, Torres CI, Esteve-Nunez A.	Front Microbiol	10.3389/fmicb.2018.00378	2018
Trace methane oxidation studied in several Euryarchaeota under diverse conditions.	Moran JJ, House CH, Freeman KH, Ferry JG.	Archaea	10.1155/2005/650670	2005
Stimulation of methane generation from nonproductive coal by addition of nutrients or a microbial consortium.	Jones EJ, Voytek MA, Corum MD, Orem WH.	Appl Environ Microbiol	10.1128/aem.00728-10	2010
Diversity and Function of Microbial Community in Chinese Strong-Flavor Baijiu Ecosystem: A Review.	Zou W, Zhao C, Luo H.	Front Microbiol	10.3389/fmicb.2018.00671	2018
Carbon monoxide dehydrogenase from Methanosarcina barkeri. Disaggregation, purification, and physicochemical properties of the enzyme.	Grahame DA, Stadtman TC.	J Biol Chem	10.1016/s0021-9258(18)61412-7	1987
Performance of trickle-bed bioreactors for converting synthesis gas to methane.	Kimmel DE, Klasson KT, Clausen EC, Gaddy JL.	Appl Biochem Biotechnol	10.1007/bf02922625	1991
In vitro inhibition of cell growth of MOLT-4 malignant human T-lymphoblasts by coenzyme F420.	Raemakers-Franken PC, De Abreu RA, Willems JG, van der Drift C, Vogels GD.	Biochem Pharmacol	10.1016/0006-2952(91)90628-i	1991
Diversity and three-dimensional structures of the alpha Mcr of the methanogenic Archaea from the anoxic region of Tucuruí Lake, in Eastern Brazilian Amazonia.	Santana PB, Junior RG, Alves CN, Silva JL, McCulloch JA, Schneider MP, da Costa da Silva A.	Genet Mol Biol	10.1590/s1415-47572012005000004	2012
The Role of 3' to 5' Reverse RNA Polymerization in tRNA Fidelity and Repair.	Chen AW, Jayasinghe MI, Chung CZ, Rao BS, Kenana R, Heinemann IU, Jackman JE.	Genes (Basel)	10.3390/genes10030250	2019
Cloning and sequencing of the genes coding for the A and B subunits of vacuolar-type Na(+)-ATPase from Enterococcus hirae. Coexistence of vacuolar- and F0F1-type ATPases in one bacterial cell.	Takase K, Yamato I, Kakinuma Y.	J Biol Chem	10.1016/s0021-9258(19)50245-9	1993
Predicting compositions of microbial communities from stoichiometric models with applications for the biogas process.	Koch S, Benndorf D, Fronk K, Reichl U, Klamt S.	Biotechnol Biofuels	10.1186/s13068-016-0429-x	2016
Coupling of carbon monoxide oxidation to CO2 and H2 with the phosphorylation of ADP in acetate-grown Methanosarcina barkeri.	Bott M, Eikmanns B, Thauer RK.	Eur J Biochem	10.1111/j.1432-1033.1986.tb09881.x	1986
Two N5,N10-methylenetetrahydromethanopterin dehydrogenases in the extreme thermophile Methanopyrus kandleri: characterization of the coenzyme F420-dependent enzyme.	Klein AR, Koch J, Stetter KO, Thauer RK.	Arch Microbiol	10.1007/bf00249123	1993
Community Composition and Ultrastructure of a Nitrate-Dependent Anaerobic Methane-Oxidizing Enrichment Culture.	Gambelli L, Guerrero-Cruz S, Mesman RJ, Cremers G, Jetten MSM, Op den Camp HJM, Kartal B, Lueke C, van Niftrik L.	Appl Environ Microbiol	10.1128/aem.02186-17	2018
Sequence conservation in the chagasin family suggests a common trend in cysteine proteinase binding by unrelated protein inhibitors.	Rigden DJ, Mosolov VV, Galperin MY.	Protein Sci	10.1110/ps.0207202	2002
Carbon-dependent control of electron transfer and central carbon pathway genes for methane biosynthesis in the Archaean, Methanosarcina acetivorans strain C2A.	Rohlin L, Gunsalus RP.	BMC Microbiol	10.1186/1471-2180-10-62	2010
Pyrrolysyl-tRNA synthetase-tRNA(Pyl) structure reveals the molecular basis of orthogonality.	Nozawa K, O'Donoghue P, Gundllapalli S, Araiso Y, Ishitani R, Umehara T, Soll D, Nureki O.	Nature	10.1038/nature07611	2009
N-furfurylformamide as a pseudo-substrate for formylmethanofuran converting enzymes from methanogenic bacteria.	Breitung J, Borner G, Karrasch M, Berkessel A, Thauer RK.	FEBS Lett	10.1016/0014-5793(90)81022-g	1990
Study of completed archaeal genomes and proteomes: hypothesis of strong mutational AT pressure existed in their common predecessor.	Khrustalev VV, Barkovsky EV.	Genomics Proteomics Bioinformatics	10.1016/s1672-0229(10)60003-4	2010
N5-methyltetrahydromethanopterin: coenzyme M methyltransferase in methanogenic archaebacteria is a membrane protein.	Fischer R, Gartner P, Yeliseev A, Thauer RK.	Arch Microbiol	10.1007/bf00290817	1992
Using genetically incorporated unnatural amino acids to control protein functions in mammalian cells.	Nodling AR, Spear LA, Williams TL, Luk LYP, Tsai YH.	Essays Biochem	10.1042/ebc20180042	2019
Identification and functional verification of archaeal-type phosphoenolpyruvate carboxylase, a missing link in archaeal central carbohydrate metabolism.	Ettema TJ, Makarova KS, Jellema GL, Gierman HJ, Koonin EV, Huynen MA, de Vos WM, van der Oost J.	J Bacteriol	10.1128/jb.186.22.7754-7762.2004	2004
High-affinity vanadate transport system in the cyanobacterium Anabaena variabilis ATCC 29413.	Pratte BS, Thiel T.	J Bacteriol	10.1128/jb.188.2.464-468.2006	2006
Formylmethanofuran dehydrogenase from methanogenic bacteria, a molybdoenzyme.	Karrasch M, Borner G, Enssle M, Thauer RK.	FEBS Lett	10.1016/0014-5793(89)80964-0	1989
Inhibition of the methylcoenzyme M methylreductase system by NAD+ and NADP+ in cell-extracts of Methanosarcina barkeri.	Mountfort DO, Asher RA.	Biochem Biophys Res Commun	10.1016/0006-291x(84)90404-2	1984
Recombinant thiopeptides containing noncanonical amino acids.	Luo X, Zambaldo C, Liu T, Zhang Y, Xuan W, Wang C, Reed SA, Yang PY, Wang RE, Javahishvili T, Schultz PG, Young TS.	Proc Natl Acad Sci U S A	10.1073/pnas.1602733113	2016
Desiccation- and Saline-Tolerant Bacteria and Archaea in Kalahari Pan Sediments.	Genderjahn S, Alawi M, Mangelsdorf K, Horn F, Wagner D.	Front Microbiol	10.3389/fmicb.2018.02082	2018
Significance of two distinct types of tryptophan synthase beta chain in Bacteria, Archaea and higher plants.	Xie G, Forst C, Bonner C, Jensen RA.	Genome Biol	10.1186/gb-2001-3-1-research0004	2002
Salt dependence, kinetic properties and catalytic mechanism of N-formylmethanofuran:tetrahydromethanopterin formyltransferase from the extreme thermophile Methanopyrus kandleri.	Breitung J, Borner G, Scholz S, Linder D, Stetter KO, Thauer RK.	Eur J Biochem	10.1111/j.1432-1033.1992.tb17502.x	1992
Loss of the mtr operon in Methanosarcina blocks growth on methanol, but not methanogenesis, and reveals an unknown methanogenic pathway.	Welander PV, Metcalf WW.	Proc Natl Acad Sci U S A	10.1073/pnas.0502623102	2005
Modelling extracellular limitations for mediated versus direct interspecies electron transfer.	Storck T, Virdis B, Batstone DJ.	ISME J	10.1038/ismej.2015.139	2016
pNEB193-derived suicide plasmids for gene deletion and protein expression in the methane-producing archaeon, Methanosarcina acetivorans.	Shea MT, Walter ME, Duszenko N, Ducluzeau AL, Aldridge J, King SK, Buan NR.	Plasmid	10.1016/j.plasmid.2016.02.003	2016
Comment on 'YcgC represents a new protein deacetylase family in prokaryotes'.	Kremer M, Kuhlmann N, Lechner M, Baldus L, Lammers M.	Elife	10.7554/elife.37798	2018
Phenylalanyl-tRNA synthetase from the archaebacterium Methanosarcina barkeri.	Rauhut R, Gabius HJ, Kuhn W, Cramer F.	J Biol Chem	10.1016/s0021-9258(20)82146-2	1984
Sequence and transcript analysis of a novel Methanosarcina barkeri methyltransferase II homolog and its associated corrinoid protein homologous to methionine synthase.	Paul L, Krzycki JA.	J Bacteriol	10.1128/jb.178.22.6599-6607.1996	1996
Role of the fused corrinoid/methyl transfer protein CmtA during CO-dependent growth of Methanosarcina acetivorans.	Vepachedu VR, Ferry JG.	J Bacteriol	10.1128/jb.00593-12	2012
Reductive activation of methanol: 5-hydroxybenzimidazolylcobamide methyltransferase of Methanosarcina barkeri.	van der Meijden P, van der Lest C, van der Drift C, Vogels GD.	Biochem Biophys Res Commun	10.1016/0006-291x(84)91460-8	1984
Effect of coculture of anaerobic fungi isolated from ruminants and non-ruminants with methanogenic bacteria on cellulolytic and xylanolytic enzyme activities.	Teunissen MJ, Kets EP, Op den Camp HJ, Huis in't Veld JH, Vogels GD.	Arch Microbiol	10.1007/bf00245287	1992
Functional organization of a single nif cluster in the mesophilic archaeon Methanosarcina mazei strain Gö1.	Ehlers C, Veit K, Gottschalk G, Schmitz RA.	Archaea	10.1155/2002/362813	2002
A comparison of the methyl reductase genes and gene products.	Weil CF, Sherf BA, Reeve JN.	Can J Microbiol	10.1139/m89-016	1989
Structural insight into the formation of lipoprotein-beta-barrel complexes.	Rodriguez-Alonso R, Letoquart J, Nguyen VS, Louis G, Calabrese AN, Iorga BI, Radford SE, Cho SH, Remaut H, Collet JF.	Nat Chem Biol	10.1038/s41589-020-0575-0	2020
Phenomenological model for predicting the catabolic potential of an arbitrary nutrient.	Seaver SM, Sales-Pardo M, Guimera R, Amaral LA.	PLoS Comput Biol	10.1371/journal.pcbi.1002762	2012
Methyltransferases involved in methanol conversion by Methanosarcina barkeri.	van der Meijden P, Heythuysen HJ, Pouwels A, Houwen F, van der Drift C, Vogels GD.	Arch Microbiol	10.1007/bf00407765	1983
Proteomic Analysis of the Hydrogen and Carbon Monoxide Metabolism of Methanothermobacter marburgensis.	Diender M, Pereira R, Wessels HJ, Stams AJ, Sousa DZ.	Front Microbiol	10.3389/fmicb.2016.01049	2016
Hydrogenase-independent uptake and metabolism of electrons by the archaeon Methanococcus maripaludis.	Lohner ST, Deutzmann JS, Logan BE, Leigh J, Spormann AM.	ISME J	10.1038/ismej.2014.82	2014
A simple chromatographic procedure for the detection of cyclized archaebacterial glycerol-bisdiphytanyl-glycerol tetraether core lipids.	Trincone A, De Rosa M, Gambacorta A, Lanzotti V, Nicolaus B, Harris JE, Grant WD.	J Gen Microbiol	10.1099/00221287-134-12-3159	1988
Crystal structures and enzymatic properties of three formyltransferases from archaea: environmental adaptation and evolutionary relationship.	Mamat B, Roth A, Grimm C, Ermler U, Tziatzios C, Schubert D, Thauer RK, Shima S.	Protein Sci	10.1110/ps.0211002	2002
Genomic reconstruction of multiple lineages of uncultured benthic archaea suggests distinct biogeochemical roles and ecological niches.	Lazar CS, Baker BJ, Seitz KW, Teske AP.	ISME J	10.1038/ismej.2016.189	2017
Coupling of ATP synthesis and methane formation from methanol and molecular hydrogen in Methanosarcina barkeri.	Blaut M, Gottschalk G.	Eur J Biochem	10.1111/j.1432-1033.1984.tb08178.x	1984
The ATP synthase of Halobacterium salinarium (halobium) is an archaebacterial type as revealed from the amino acid sequences of its two major subunits.	Ihara K, Mukohata Y.	Arch Biochem Biophys	10.1016/0003-9861(91)90015-b	1991
Coenzyme F430 as a possible catalyst for the reductive dehalogenation of chlorinated C1 hydrocarbons in methanogenic bacteria.	Krone UE, Laufer K, Thauer RK, Hogenkamp HP.	Biochemistry	10.1021/bi00452a027	1989
Archaebacterial phenylalanyl-tRNA synthetase. Accuracy of the phenylalanyl-tRNA synthetase from the archaebacterium Methanosarcina barkeri, Zn(II)-dependent synthesis of diadenosine 5',5'''-P1,P4-tetraphosphate, and immunological relationship of OFFnylalanyl-tRNA synthetases from different urkingdoms.	Rauhut R, Gabius HJ, Engelhardt R, Cramer F.	J Biol Chem	10.1016/s0021-9258(18)89712-5	1985
The sodium cycle in methanogenesis. CO2 reduction to the formaldehyde level in methanogenic bacteria is driven by a primary electrochemical potential of Na+ generated by formaldehyde reduction to CH4.	Kaesler B, Schonheit P.	Eur J Biochem	10.1111/j.1432-1033.1989.tb15210.x	1989
Metagenomic Reconstruction of Key Anaerobic Digestion Pathways in Municipal Sludge and Industrial Wastewater Biogas-Producing Systems.	Cai M, Wilkins D, Chen J, Ng SK, Lu H, Jia Y, Lee PK.	Front Microbiol	10.3389/fmicb.2016.00778	2016
Resistance phenotypes mediated by aminoacyl-phosphatidylglycerol synthases.	Arendt W, Hebecker S, Jager S, Nimtz M, Moser J.	J Bacteriol	10.1128/jb.06576-11	2012
Ferredoxin and rubredoxin from Butyribacterium methylotrophicum: complete primary structures and construction of phylogenetic trees.	Saeki K, Yao Y, Wakabayashi S, Shen GJ, Zeikus JG, Matsubara H.	J Biochem	10.1093/oxfordjournals.jbchem.a122912	1989
Ubiquitination of the Dishevelled DIX domain blocks its head-to-tail polymerization.	Madrzak J, Fiedler M, Johnson CM, Ewan R, Knebel A, Bienz M, Chin JW.	Nat Commun	10.1038/ncomms7718	2015
Characterization of a heme-dependent catalase from Methanobrevibacter arboriphilus.	Shima S, Sordel-Klippert M, Brioukhanov A, Netrusov A, Linder D, Thauer RK.	Appl Environ Microbiol	10.1128/aem.67.7.3041-3045.2001	2001
Conserved amino acid sequence features in the alpha subunits of MoFe, VFe, and FeFe nitrogenases.	Glazer AN, Kechris KJ.	PLoS One	10.1371/journal.pone.0006136	2009
Non-Psychrophilic Methanogens Capable of Growth Following Long-Term Extreme Temperature Changes, with Application to Mars.	Mickol RL, Laird SK, Kral TA.	Microorganisms	10.3390/microorganisms6020034	2018
Carbon Isotope Fractionation during Catabolism and Anabolism in Acetogenic Bacteria Growing on Different Substrates.	Freude C, Blaser M.	Appl Environ Microbiol	10.1128/aem.03502-15	2016
RedCom: A strategy for reduced metabolic modeling of complex microbial communities and its application for analyzing experimental datasets from anaerobic digestion.	Koch S, Kohrs F, Lahmann P, Bissinger T, Wendschuh S, Benndorf D, Reichl U, Klamt S.	PLoS Comput Biol	10.1371/journal.pcbi.1006759	2019
Primordial soup or vinaigrette: did the RNA world evolve at acidic pH?	Bernhardt HS, Tate WP.	Biol Direct	10.1186/1745-6150-7-4	2012
Structural and Phylogenetic Diversity of Anaerobic Carbon-Monoxide Dehydrogenases.	Inoue M, Nakamoto I, Omae K, Oguro T, Ogata H, Yoshida T, Sako Y.	Front Microbiol	10.3389/fmicb.2018.03353	2018
Characterization of the chromosomal protein MC1 from the thermophilic archaebacterium Methanosarcina sp. CHTI 55 and its effect on the thermal stability of DNA.	Chartier F, Laine B, Sautiere P.	Biochim Biophys Acta	10.1016/0167-4781(88)90035-8	1988
Site-Specific Bioorthogonal Labeling for Fluorescence Imaging of Intracellular Proteins in Living Cells.	Peng T, Hang HC.	J Am Chem Soc	10.1021/jacs.6b08733	2016
CO Metabolism in the Thermophilic Acetogen Thermoanaerobacter kivui.	Weghoff MC, Muller V.	Appl Environ Microbiol	10.1128/aem.00122-16	2016
Nanopore sequencing in microgravity.	McIntyre ABR, Rizzardi L, Yu AM, Yu AM, Alexander N, Rosen GL, Botkin DJ, Stahl SE, John KK, Castro-Wallace SL, McGrath K, Burton AS, Feinberg AP, Mason CE.	NPJ Microgravity	10.1038/npjmgrav.2016.35	2016
Hydrogen production by rumen holotrich protozoa: effects of oxygen and implications for metabolic control by in situ conditions.	Lloyd D, Hillman K, Yarlett N, Williams AG.	J Protozool	10.1111/j.1550-7408.1989.tb01075.x	1989
The role of sodium ions in methanogenesis. Formaldehyde oxidation to CO2 and 2H2 in methanogenic bacteria is coupled with primary electrogenic Na+ translocation at a stoichiometry of 2-3 Na+/CO2.	Kaesler B, Schonheit P.	Eur J Biochem	10.1111/j.1432-1033.1989.tb15010.x	1989
Interactions between nitrogen fixation and osmoregulation in the methanogenic archaeon methanosarcina barkeri 227	Brabban AD, Orcutt EN, Zinder SH.	Appl Environ Microbiol	10.1128/aem.65.3.1222-1227.1999	1999
Interactions between the promoter regions of nitrogenase structural genes (nifHDK2) and DNA-binding proteins from N2- and ammonium-grown cells of the archaeon Methanosarcina barkeri 227.	Chien Y, Helmann JD, Zinder SH.	J Bacteriol	10.1128/jb.180.10.2723-2728.1998	1998
Novel, acid-labile, hydroxydiether lipid cores in methanogenic bacteria.	Sprott GD, Ekiel I, Dicaire C.	J Biol Chem	10.1016/s0021-9258(18)77411-5	1990
A methyl-CoM methylreductase system from methanogenic bacterium strain Gö 1 not requiring ATP for activity.	Deppenmeier U, Blaut M, Jussofie A, Gottschalk G.	FEBS Lett	10.1016/0014-5793(88)81031-7	1988
A methylated lysine is a switch point for conformational communication in the chaperone Hsp90.	Rehn A, Lawatscheck J, Jokisch ML, Mader SL, Luo Q, Tippel F, Blank B, Richter K, Lang K, Kaila VRI, Buchner J.	Nat Commun	10.1038/s41467-020-15048-8	2020
Role of vitamin B12 in methyl transfer for methane biosynthesis by Methanosarcina barkeri.	Wood JM, Moura I, Moura JJ, Santos MH, Xavier AV, LeGall J, Scandellari M.	Science	10.1126/science.7063887	1982
The trimethylamine methyltransferase gene and multiple dimethylamine methyltransferase genes of Methanosarcina barkeri contain in-frame and read-through amber codons.	Paul L, Ferguson DJ, Krzycki JA.	J Bacteriol	10.1128/jb.182.9.2520-2529.2000	2000
Interconversion of F430 derivatives of methanogenic bacteria.	Keltjens JT, Hermans JM, Rijsdijk GJ, van der Drift C, Vogels GD.	Antonie Van Leeuwenhoek	10.1007/bf00443579	1988
Structural, mass and elemental analyses of storage granules in methanogenic archaeal cells.	Toso DB, Henstra AM, Gunsalus RP, Zhou ZH.	Environ Microbiol	10.1111/j.1462-2920.2011.02531.x	2011
The bidirectional NiFe-hydrogenase in Synechocystis sp. PCC 6803 is reduced by flavodoxin and ferredoxin and is essential under mixotrophic, nitrate-limiting conditions.	Gutekunst K, Chen X, Schreiber K, Kaspar U, Makam S, Appel J.	J Biol Chem	10.1074/jbc.m113.526376	2014
Modulation of Central Carbon Metabolism by Acetylation of Isocitrate Lyase in Mycobacterium tuberculosis.	Bi J, Wang Y, Yu H, Qian X, Wang H, Liu J, Liu J, Zhang X.	Sci Rep	10.1038/srep44826	2017
In vitro methane and methyl coenzyme M formation from acetate: evidence that acetyl-CoA is the required intermediate activated form of acetate.	Grahame DA, Stadtman TC.	Biochem Biophys Res Commun	10.1016/s0006-291x(87)80114-6	1987
Site-specific ubiquitylation acts as a regulator of linker histone H1.	Hollmuller E, Geigges S, Niedermeier ML, Kammer KM, Kienle SM, Rosner D, Scheffner M, Marx A, Stengel F.	Nat Commun	10.1038/s41467-021-23636-5	2021
Geranylgeranyl reductase and ferredoxin from Methanosarcina acetivorans are required for the synthesis of fully reduced archaeal membrane lipid in Escherichia coli cells.	Isobe K, Ogawa T, Hirose K, Yokoi T, Yoshimura T, Hemmi H.	J Bacteriol	10.1128/jb.00927-13	2014
Comparative analysis of genes encoding methyl coenzyme M reductase in methanogenic bacteria.	Klein A, Allmansberger R, Bokranz M, Knaub S, Muller B, Muth E.	Mol Gen Genet	10.1007/bf00339610	1988
Involvement of methyltransferase-activating protein and methyltransferase 2 isoenzyme II in methylamine:coenzyme M methyltransferase reactions in Methanosarcina barkeri Fusaro.	Wassenaar RW, Daas PJ, Geerts WJ, Keltjens JT, van der Drift C.	J Bacteriol	10.1128/jb.178.23.6937-6944.1996	1996
Ferredoxin from Methanosarcina barkeri: evidence for the presence of a three-iron center.	Moura I, Moura JJ, Huynh BH, Santos H, LeGall J, Xavier AV.	Eur J Biochem	10.1111/j.1432-1033.1982.tb06751.x	1982
Unusual Butane- and Pentanetriol-Based Tetraether Lipids in Methanomassiliicoccus luminyensis, a Representative of the Seventh Order of Methanogens.	Becker KW, Elling FJ, Yoshinaga MY, Sollinger A, Urich T, Hinrichs KU.	Appl Environ Microbiol	10.1128/aem.00772-16	2016
Modeling methanogenesis with a genome-scale metabolic reconstruction of Methanosarcina barkeri.	Feist AM, Scholten JC, Palsson BO, Brockman FJ, Ideker T.	Mol Syst Biol	10.1038/msb4100046	2006
Energy conservation by oxidation of formate to carbon dioxide and hydrogen via a sodium ion current in a hyperthermophilic archaeon.	Lim JK, Mayer F, Kang SG, Muller V.	Proc Natl Acad Sci U S A	10.1073/pnas.1407056111	2014
Growth of Methanosarcina barkeri (Fusaro) under nonmethanogenic conditions by the fermentation of pyruvate to acetate: ATP synthesis via the mechanism of substrate level phosphorylation.	Bock AK, Schonheit P.	J Bacteriol	10.1128/jb.177.8.2002-2007.1995	1995
Inter-phylum HGT has shaped the metabolism of many mesophilic and anaerobic bacteria.	Caro-Quintero A, Konstantinidis KT.	ISME J	10.1038/ismej.2014.193	2015
New perspectives on bacterial ferredoxin evolution.	George DG, Hunt LT, Yeh LS, Barker WC.	J Mol Evol	10.1007/bf02105801	1985
Lysine-2,3-aminomutase and beta-lysine acetyltransferase genes of methanogenic archaea are salt induced and are essential for the biosynthesis of Nepsilon-acetyl-beta-lysine and growth at high salinity.	Pfluger K, Baumann S, Gottschalk G, Lin W, Santos H, Muller V.	Appl Environ Microbiol	10.1128/aem.69.10.6047-6055.2003	2003
Cloning, functional organization, transcript studies, and phylogenetic analysis of the complete nitrogenase structural genes (nifHDK2) and associated genes in the archaeon Methanosarcina barkeri 227.	Chien YT, Zinder SH.	J Bacteriol	10.1128/jb.178.1.143-148.1996	1996
Functional Role of MrpA in the MrpABCDEFG Na+/H+ Antiporter Complex from the Archaeon Methanosarcina acetivorans.	Jasso-Chavez R, Diaz-Perez C, Rodriguez-Zavala JS, Ferry JG.	J Bacteriol	10.1128/jb.00662-16	2017
Inhibition of methanogenesis in pure cultures by ammonia, fatty acids, and heavy metals, and protection against heavy metal toxicity by sewage sludge.	Jarrell KF, Saulnier M, Ley A.	Can J Microbiol	10.1139/m87-093	1987
Purification and properties of N5,N10-methylenetetrahydromethanopterin reductase (coenzyme F420-dependent) from the extreme thermophile Methanopyrus kandleri.	Ma K, Linder D, Stetter KO, Thauer RK.	Arch Microbiol	10.1007/bf00245355	1991
A Robust and Quantitative Reporter System To Evaluate Noncanonical Amino Acid Incorporation in Yeast.	Stieglitz JT, Kehoe HP, Lei M, Van Deventer JA.	ACS Synth Biol	10.1021/acssynbio.8b00260	2018
Kinetic study and mathematical modeling of methanogenesis of acetate using pure cultures of methanogens.	Yang ST, Okos MR.	Biotechnol Bioeng	10.1002/bit.260300510	1987
Complete degradation of carbohydrate to carbon dioxide and methane by syntrophic cultures of Acetobacterium woodii and Methanosarcina barkeri.	Winter J, Wolfe RS.	Arch Microbiol	10.1007/bf00409211	1979
Chloroform degradation in methanogenic methanol enrichment cultures and by Methanosarcina barkeri 227.	Bagley DM, Gossett JM.	Appl Environ Microbiol	10.1128/aem.61.9.3195-3201.1995	1995
Characterizing the metabolism of Dehalococcoides with a constraint-based model.	Ahsanul Islam M, Edwards EA, Mahadevan R.	PLoS Comput Biol	10.1371/journal.pcbi.1000887	2010
Archaea on human skin.	Probst AJ, Auerbach AK, Moissl-Eichinger C.	PLoS One	10.1371/journal.pone.0065388	2013
Genome-scale metabolic reconstructions of Bifidobacterium adolescentis L2-32 and Faecalibacterium prausnitzii A2-165 and their interaction.	El-Semman IE, Karlsson FH, Shoaie S, Nookaew I, Soliman TH, Nielsen J.	BMC Syst Biol	10.1186/1752-0509-8-41	2014
The responses of an anaerobic microorganism, Yersinia intermedia MASE-LG-1 to individual and combined simulated Martian stresses.	Beblo-Vranesevic K, Bohmeier M, Perras AK, Schwendner P, Rabbow E, Moissl-Eichinger C, Cockell CS, Pukall R, Vannier P, Marteinsson VT, Monaghan EP, Ehrenfreund P, Garcia-Descalzo L, Gomez F, Malki M, Amils R, Gaboyer F, Westall F, Cabezas P, Walter N, Rettberg P.	PLoS One	10.1371/journal.pone.0185178	2017
Selective recognition of histone crotonylation by double PHD fingers of MOZ and DPF2.	Xiong X, Panchenko T, Yang S, Zhao S, Yan P, Zhang W, Xie W, Li Y, Zhao Y, Allis CD, Li H.	Nat Chem Biol	10.1038/nchembio.2218	2016
Engineering the respiratory membrane-bound hydrogenase of the hyperthermophilic archaeon Pyrococcus furiosus and characterization of the catalytically active cytoplasmic subcomplex.	McTernan PM, Chandrayan SK, Wu CH, Vaccaro BJ, Lancaster WA, Adams MW, Adams MW.	Protein Eng Des Sel	10.1093/protein/gzu051	2015
Acetate, methanol and carbon dioxide as substrates for growth of Methanosarcina barkeri.	Hutten TJ, Bongaerts HC, van der Drift C, Vogels GD.	Antonie Van Leeuwenhoek	10.1007/bf00394016	1980
Genome sequence of a mesophilic hydrogenotrophic methanogen Methanocella paludicola, the first cultivated representative of the order Methanocellales.	Sakai S, Takaki Y, Shimamura S, Sekine M, Tajima T, Kosugi H, Ichikawa N, Tasumi E, Hiraki AT, Shimizu A, Kato Y, Nishiko R, Mori K, Fujita N, Imachi H, Takai K.	PLoS One	10.1371/journal.pone.0022898	2011
Proton-motive-force-driven formation of CO from CO2 and H2 in methanogenic bacteria.	Bott M, Thauer RK.	Eur J Biochem	10.1111/j.1432-1033.1987.tb13434.x	1987
An overview of physico-chemical mechanisms of biogas production by microbial communities: a step towards sustainable waste management.	Goswami R, Chattopadhyay P, Shome A, Banerjee SN, Chakraborty AK, Mathew AK, Chaudhury S.	3 Biotech	10.1007/s13205-016-0395-9	2016
Computational identification of obligatorily autocatalytic replicators embedded in metabolic networks.	Kun A, Papp B, Szathmary E.	Genome Biol	10.1186/gb-2008-9-3-r51	2008
Methanogenesis and ATP synthesis in methanogenic bacteria at low electrochemical proton potentials. An explanation for the apparent uncoupler insensitivity of ATP synthesis.	Kaesler B, Schonheit P.	Eur J Biochem	10.1111/j.1432-1033.1988.tb14081.x	1988
Mapping hidden potential identity elements by computing the average discriminating power of individual tRNA positions.	Szenes A, Pal G.	DNA Res	10.1093/dnares/dss008	2012
Ammonia switch-off of nitrogen fixation in the methanogenic archaeon Methanococcus maripaludis: mechanistic features and requirement for the novel GlnB homologues, NifI(1) and NifI(2).	Kessler PS, Daniel C, Leigh JA.	J Bacteriol	10.1128/jb.183.3.882-889.2001	2001
Variations in Temperature Sensitivity (Q10) of CH4 Emission from a Subtropical Estuarine Marsh in Southeast China.	Wang C, Lai DY, Tong C, Wang W, Huang J, Zeng C.	PLoS One	10.1371/journal.pone.0125227	2015
Analyses of soil microbial community compositions and functional genes reveal potential consequences of natural forest succession.	Cong J, Yang Y, Liu X, Lu H, Liu X, Zhou J, Li D, Yin H, Ding J, Zhang Y.	Sci Rep	10.1038/srep10007	2015
Oxaloacetate synthesis in the methanarchaeon Methanosarcina barkeri: pyruvate carboxylase genes and a putative Escherichia coli-type bifunctional biotin protein ligase gene (bpl/birA) exhibit a unique organization.	Mukhopadhyay B, Purwantini E, Kreder CL, Wolfe RS.	J Bacteriol	10.1128/jb.183.12.3804-3810.2001	2001
Assessment of the microbial ecology of ruminal methanogens in cattle with different feed efficiencies.	Zhou M, Hernandez-Sanabria E, Guan LL.	Appl Environ Microbiol	10.1128/aem.02815-08	2009
Paths of lateral gene transfer of lysyl-aminoacyl-tRNA synthetases with a unique evolutionary transition stage of prokaryotes coding for class I and II varieties by the same organisms.	Shaul S, Nussinov R, Pupko T.	BMC Evol Biol	10.1186/1471-2148-6-22	2006
Towards a generic prototyping approach for therapeutically-relevant peptides and proteins in a cell-free translation system.	Wu Y, Cui Z, Huang YH, de Veer SJ, Aralov AV, Guo Z, Moradi SV, Hinton AO, Deuis JR, Guo S, Chen KE, Collins BM, Vetter I, Herzig V, Jones A, Cooper MA, King GF, Craik DJ, Alexandrov K, Mureev S.	Nat Commun	10.1038/s41467-021-27854-9	2022
Coenzyme M methylase activity of the 480-kilodalton corrinoid protein from Methanosarcina barkeri.	Tallant TC, Krzycki JA.	J Bacteriol	10.1128/jb.178.5.1295-1301.1996	1996
Bioenergetics of methanogenesis from acetate by Methanosarcina barkeri.	Peinemann S, Muller V, Blaut M, Gottschalk G.	J Bacteriol	10.1128/jb.170.3.1369-1372.1988	1988
Microbial populations involved in cycling of dimethyl sulfide and methanethiol in freshwater sediments.	Lomans BP, Luderer R, Steenbakkers P, Pol A, van Der Drift C, Vogels GD, Op den Camp HJ.	Appl Environ Microbiol	10.1128/aem.67.3.1044-1051.2001	2001
Expanding the genetic code of yeast for incorporation of diverse unnatural amino acids via a pyrrolysyl-tRNA synthetase/tRNA pair.	Hancock SM, Uprety R, Deiters A, Chin JW.	J Am Chem Soc	10.1021/ja104609m	2010
Carboxydotrophic growth of Geobacter sulfurreducens.	Geelhoed JS, Henstra AM, Stams AJ.	Appl Microbiol Biotechnol	10.1007/s00253-015-7033-z	2016
Trans-editing of mischarged tRNAs.	Ahel I, Korencic D, Ibba M, Soll D.	Proc Natl Acad Sci U S A	10.1073/pnas.2136934100	2003
Generation of dominant selectable markers for resistance to pseudomonic acid by cloning and mutagenesis of the ileS gene from the archaeon Methanosarcina barkeri fusaro.	Boccazzi P, Zhang JK, Metcalf WW.	J Bacteriol	10.1128/jb.182.9.2611-2618.2000	2000
Purification and characterization of carbon monoxide dehydrogenase, a nickel, zinc, iron-sulfur protein, from Rhodospirillum rubrum.	Bonam D, Ludden PW.	J Biol Chem	10.1016/s0021-9258(18)61456-5	1987
Stable Carbon Isotope Fractionation by Methanosarcina barkeri during Methanogenesis from Acetate, Methanol, or Carbon Dioxide-Hydrogen.	Krzycki JA, Kenealy WR, Deniro MJ, Zeikus JG.	Appl Environ Microbiol	10.1128/aem.53.10.2597-2599.1987	1987
Identification of two mutations increasing the methanol tolerance of Corynebacterium glutamicum.	Lessmeier L, Wendisch VF.	BMC Microbiol	10.1186/s12866-015-0558-6	2015
Lack of peptidoglycan in the cell walls of Methanosarcina barkeri.	Kandler O, Hippe H.	Arch Microbiol	10.1007/bf00428580	1977
Isolation and characterization of methanogenic bacteria from landfills.	Fielding ER, Archer DB, Conway de Macario E, Macario AJ.	Appl Environ Microbiol	10.1128/aem.54.3.835-836.1988	1988
Conservation of structure in the human gene encoding argininosuccinate synthetase and the argG genes of the archaebacteria Methanosarcina barkeri MS and Methanococcus vannielii.	Morris CJ, Reeve JN.	J Bacteriol	10.1128/jb.170.7.3125-3130.1988	1988
Selenite Reduction by Anaerobic Microbial Aggregates: Microbial Community Structure, and Proteins Associated to the Produced Selenium Spheres.	Gonzalez-Gil G, Lens PN, Saikaly PE.	Front Microbiol	10.3389/fmicb.2016.00571	2016
Structure of the cobalamin-binding protein of a putative O-demethylase from Desulfitobacterium hafniense DCB-2.	Sjuts H, Dunstan MS, Fisher K, Leys D.	Acta Crystallogr D Biol Crystallogr	10.1107/s0907444913011323	2013
Efficient viral delivery system for unnatural amino acid mutagenesis in mammalian cells.	Chatterjee A, Xiao H, Bollong M, Ai HW, Schultz PG.	Proc Natl Acad Sci U S A	10.1073/pnas.1309584110	2013
Pattern of organotin inhibition of methanogenic bacteria.	Boopathy R, Daniels L.	Appl Environ Microbiol	10.1128/aem.57.4.1189-1193.1991	1991
A rapid and sensitive assay for quantifying the activity of both aerobic and anaerobic ribonucleotide reductases acting upon any or all substrates.	Levitz TS, Andree GA, Jonnalagadda R, Dawson CD, Bjork RE, Drennan CL.	PLoS One	10.1371/journal.pone.0269572	2022
Hydrogen-using bacteria in a methanogenic acetate enrichment culture.	Archer DB.	J Appl Bacteriol	10.1111/j.1365-2672.1984.tb04703.x	1984
Comparative genomic analysis of evolutionarily conserved but functionally uncharacterized membrane proteins in archaea: Prediction of novel components of secretion, membrane remodeling and glycosylation systems.	Makarova KS, Galperin MY, Koonin EV.	Biochimie	10.1016/j.biochi.2015.01.004	2015
Oxygen sensitivity of methanogenic bacteria.	Kiener A, Leisinger T.	Syst Appl Microbiol	10.1016/s0723-2020(83)80017-4	1983
Novel domain arrangement in the crystal structure of a truncated acetyl-CoA synthase from Moorella thermoacetica.	Volbeda A, Darnault C, Tan X, Lindahl PA, Fontecilla-Camps JC.	Biochemistry	10.1021/bi9003952	2009
Quantification of coenzymes and related compounds from methanogenic bacteria by high-performance liquid chromatography.	Van Beelen P, Geerts WJ, Pol A, Vogels GD.	Anal Biochem	10.1016/0003-2697(83)90171-9	1983
Genome-scale reconstruction and analysis of the metabolic network in the hyperthermophilic archaeon Sulfolobus solfataricus.	Ulas T, Riemer SA, Zaparty M, Siebers B, Schomburg D.	PLoS One	10.1371/journal.pone.0043401	2012
Site-Specific Labelling of Multidomain Proteins by Amber Codon Suppression.	Heil CS, Rittner A, Goebel B, Beyer D, Grininger M.	Sci Rep	10.1038/s41598-018-33115-5	2018
CRISPR-Cas3 induces broad and unidirectional genome editing in human cells.	Morisaka H, Yoshimi K, Okuzaki Y, Gee P, Kunihiro Y, Sonpho E, Xu H, Sasakawa N, Naito Y, Nakada S, Yamamoto T, Sano S, Hotta A, Takeda J, Mashimo T.	Nat Commun	10.1038/s41467-019-13226-x	2019
Dynamic epistasis for different alleles of the same gene.	Xu L, Barker B, Gu Z.	Proc Natl Acad Sci U S A	10.1073/pnas.1121507109	2012
Biomethane potential of industrial paper wastes and investigation of the methanogenic communities involved.	Walter A, Silberberger S, Juarez MF, Insam H, Franke-Whittle IH.	Biotechnol Biofuels	10.1186/s13068-016-0435-z	2016
Comparison of various microbial inocula for the efficient anaerobic digestion of Laminaria hyperborea.	Sutherland AD, Varela JC.	BMC Biotechnol	10.1186/1472-6750-14-7	2014
Seasonal transition of active bacterial and archaeal communities in relation to water management in paddy soils.	Itoh H, Ishii S, Shiratori Y, Oshima K, Otsuka S, Hattori M, Senoo K.	Microbes Environ	10.1264/jsme2.me13030	2013
Different substrate regimes determine transcriptional profiles and gene co-expression in Methanosarcina barkeri (DSM 800).	Lin Q, Fang X, Ho A, Li J, Yan X, Tu B, Li C, Li J, Yao M, Li X	Appl Microbiol Biotechnol	10.1007/s00253-017-8457-4	2017
F0F1-ATPase genes from an archaebacterium, Methanosarcina barkeri.	Sumi M, Yohda M, Koga Y, Yoshida M	Biochem Biophys Res Commun	10.1006/bbrc.1997.7809	1997
In vivo 31P- and 13C-NMR studies of ATP synthesis and methane formation by Methanosarcina barkeri.	Santos H, Fareleira P, Toci R, LeGall J, Peck HD Jr, Xavier AV	Eur J Biochem	10.1111/j.1432-1033.1989.tb14663.x	1989
Low-spin sulfite reductases: a new homologous group of non-heme iron-siroheme proteins in anaerobic bacteria.	Moura I, Lino AR, Moura JJ, Xavier AV, Fauque G, Peck HD Jr, LeGall J	Biochem Biophys Res Commun	10.1016/s0006-291x(86)80148-6	1986
Purification, characterization and redox properties of hydrogenase from Methanosarcina barkeri (DSM 800).	Fauque G, Teixeira M, Moura I, Lespinat PA, Xavier AV, Der Vartanian DV, Peck HD Jr, Le Gall J, Moura JG	Eur J Biochem	10.1111/j.1432-1033.1984.tb08245.x	1984
Amino acid sequence of a 3Fe:3S ferredoxin from the "archaebacterium" Methanosarcina barkeri (DSM 800).	Hausinger RP, Moura I, Moura JJ, Xavier AV, Santos MH, LeGall J, Howard JB	J Biol Chem	S0021-9258(19)45364-7	1982
Loktanella maritima sp. nov. isolated from shallow marine sediments.	Tanaka N, Romanenko LA, Kurilenko VV, Svetashev VI, Kalinovskaya NI, Mikhailov VV.	Int J Syst Evol Microbiol	10.1099/ijs.0.061747-0	2014
Methanomethylophilus alvi gen. nov., sp. nov., a Novel Hydrogenotrophic Methyl-Reducing Methanogenic Archaea of the Order Methanomassiliicoccales Isolated from the Human Gut and Proposal of the Novel Family Methanomethylophilaceae fam. nov.	Borrel G, Fadhlaoui K, Ben Hania W, Gaci N, Pehau-Arnaudet G, Chaudhary PP, Vandekerckove P, Ballet N, Alric M, O'Toole PW, Fardeau ML, Ollivier B, Brugere JF.	Microorganisms	10.3390/microorganisms11112794	2023
Isolation and characterization of a novel methanogen Methanosarcina hadiensis sp. nov. from subsurface Boom Clay pore water.	Gimenez FJ, Peeters E, Honty M, Leys N, Mijnendonckx K.	Environ Microbiol	10.1111/1462-2920.70004	2024
Methanosarcina lacustris sp. nov., a new psychrotolerant methanogenic archaeon from anoxic lake sediments.	Simankova MV, Parshina SN, Tourova TP, Kolganova TV, Zehnder AJ, Nozhevnikova AN.	Syst Appl Microbiol	10.1078/0723-2020-00058	2001
Methanogenesis from methanol at low temperatures by a novel psychrophilic methanogen, "Methanolobus psychrophilus" sp. nov., prevalent in Zoige wetland of the Tibetan plateau.	Zhang G, Jiang N, Liu X, Dong X.	Appl Environ Microbiol	10.1128/aem.01146-08	2008
Methanosarcina spelaei sp. nov., a methanogenic archaeon isolated from a floating biofilm of a subsurface sulphurous lake.	Ganzert L, Schirmack J, Alawi M, Mangelsdorf K, Sand W, Hillebrand-Voiculescu A, Wagner D	Int J Syst Evol Microbiol	10.1099/ijs.0.064956-0	2014

References

#456	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 800
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Methanosarcina barkeri (DSM 800, ATCC 43569, JCM 10043)

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