Methanosarcina barkeri (DSM 800, ATCC 43569, JCM 10043)

Name: Methanosarcina barkeri (DSM 800, ATCC 43569, JCM 10043)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7087

Type strain

Strain Designation MS

Culture col. no. DSM 800 ATCC 43569 JCM 10043 OCM 38 MS 2 more

NCBI tax ID(s) 1298606 2208

Special Collections DSMZ JCM

History DSMZ <- M. P. Bryant, University of Illinois, Urbana, USA; MS <- M. P. Bryant {1968} JCM <-- DSM 800 <-- M. P. Bryant MS.

Links

Methanosarcina barkeri MS is an anaerobe archaeon that was isolated from anaerobic sewage digester.

anaerobe genome sequence 16S sequence Archaea

Name and taxonomic classification

SI-ID 354032

DSM 800,JCM 10043,ATCC 43569,VKM B-1635,NBRC 100474,BCRC 16175,CCRC 16175

@ref 20215

Last LPSN update 2026-05-29 08:26:34

Domain Archaea

Phylum Methanobacteriota

Class Methanosarcinia

Order Methanosarcinales

Family Methanosarcinaceae

Genus Methanosarcina

Species Methanosarcina barkeri

Full scientific name Methanosarcina barkeri Schnellen 1947 (Approved Lists 1980)

BacDive ID	Other strains from **Methanosarcina barkeri** (4)	Type strain
7090	M. barkeri DSM 1311, OCM 27
7091	M. barkeri 227, DSM 1538, ATCC 43241, OCM 35
7093	M. barkeri DSM 2948, OCM 86
7094	M. barkeri Wiesmoor, DSM 8687, OCM 89

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	91.896

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
456	METHANOSARCINA MEDIUM (DSMZ Medium 120)		Medium recipe at MediaDive	Name: METHANOSARCINA MEDIUM (DSMZ Medium 120) Composition: Methanol 15.4688 g/l Na-acetate 2.44141 g/l NaCl 2.19727 g/l NaHCO3 1.95312 g/l Casitone 1.95312 g/l Yeast extract 1.95312 g/l NH4Cl 0.488281 g/l MgSO4 x 7 H2O 0.488281 g/l K2HPO4 0.341797 g/l Na2S x 9 H2O 0.292969 g/l L-Cysteine HCl x H2O 0.292969 g/l CaCl2 x 2 H2O 0.244141 g/l KH2PO4 0.224609 g/l HCl 0.00244141 g/l FeSO4 x 7 H2O 0.00195312 g/l FeCl2 x 4 H2O 0.00146484 g/l Sodium resazurin 0.000488281 g/l CoCl2 x 6 H2O 0.000185547 g/l Pyridoxine hydrochloride 9.76563e-05 g/l MnCl2 x 4 H2O 9.76563e-05 g/l ZnCl2 6.83594e-05 g/l Riboflavin 4.88281e-05 g/l Calcium D-(+)-pantothenate 4.88281e-05 g/l Nicotinic acid 4.88281e-05 g/l (DL)-alpha-Lipoic acid 4.88281e-05 g/l Thiamine HCl 4.88281e-05 g/l p-Aminobenzoic acid 4.88281e-05 g/l Na2MoO4 x 2 H2O 3.51562e-05 g/l NiCl2 x 6 H2O 2.34375e-05 g/l Folic acid 1.95312e-05 g/l Biotin 1.95312e-05 g/l H3BO3 5.85938e-06 g/l CuCl2 x 2 H2O 1.95313e-06 g/l Vitamin B12 9.76563e-07 g/l H2SO4 Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
456	positive	growth	35
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

456

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation	Confidence
125439		98.325

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Biodegradation	#Anaerobic digestor
#Engineered	#Waste	#Wastewater
#Condition	#Anoxic (anaerobic)	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
456	anaerobic sewage digester	Illinois, Urbana	USA	USA	North America
67770	Anaerobic sewage-sludge digester	Urbana, IL	USA	USA	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
456	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM97002v1 assembly for Methanosarcina barkeri MS	complete	GCA_000970025	1434108.4	2630968729	1434108	97
66792	ASM131630v1 assembly for Methanosarcina barkeri JCM 10043	contig	GCA_001316305	1298606.3	2684622504	1298606	0

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Methanosarcina barkeri culture DSM:800 16S ribosomal RNA gene, partial sequence	JQ346756	1268	2208
456	Methanosarcina barkeri 16S rRNA gene, strain DSM 800 (T)	AJ012094	1411	2208
124043	Methanosarcina barkeri gene for 16S ribosomal RNA, partial sequence, strain: DSM 800.	AB973360	1409	2208

GC content

@ref	GC-content (mol%)	Method
456	38.8
67770	38.8	Buoyant density centrifugation (BD)
67770	39	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM97002v1 assembly for Methanosarcina barkeri MS
BV-BRC: 1434108.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	77.59	no
125439	gram_stain	BacteriaNetⓘ	negative	91.90	no
125439	motility	BacteriaNetⓘ	no	85.01	no
125439	spore_formation	BacteriaNetⓘ	no	98.33	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Methanosarcina barkeri MS MS
NCBI: GCA_000970025.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	67.12	no
125438	anaerobic	anaerobicⓘ	yes	81.83	no
125438	aerobic	aerobicⓘ	no	90.34	yes
125438	spore-forming	spore-formingⓘ	no	81.25	no
125438	thermophilic	thermophileⓘ	no	87.02	no
125438	flagellated	motile2+ⓘ	no	83.88	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Thermodynamic restrictions determine ammonia tolerance of methanogenic pathways in Methanosarcina barkeri.	Yi Y, Dolfing J, Jin G, Fang X, Han W, Liu L, Tang Y, Cheng L.	Water Res	10.1016/j.watres.2023.119664	2023
Metabolism	The novel regulator HdrR controls the transcription of the heterodisulfide reductase operon hdrBCA in Methanosarcina barkeri.	Zhang S, Chen Y, Wang S, Yang Q, Leng H, Zhao P, Guo L, Dai L, Bai L, Cha G.	Appl Environ Microbiol	10.1128/aem.00691-24	2024
	Electrical current disrupts the electron transfer in defined consortia.	Yee MO, Ottosen LDM, Rotaru AE.	Microb Biotechnol	10.1111/1751-7915.14373	2024
	The reduction of environmentally abundant iron oxides by the methanogen Methanosarcina barkeri.	Eliani-Russak E, Tik Z, Uzi-Gavrilov S, Meijler MM, Sivan O.	Front Microbiol	10.3389/fmicb.2023.1197299	2023
	A unified and simple medium for growing model methanogens.	Dzofou Ngoumelah D, Harnisch F, Sulheim S, Heggeset TMB, Aune IH, Wentzel A, Kretzschmar J.	Front Microbiol	10.3389/fmicb.2022.1046260	2022
	Methanogenesis in the presence of oxygenic photosynthetic bacteria may contribute to global methane cycle.	Ye J, Zhuang M, Hong M, Zhang D, Ren G, Hu A, Yang C, He Z, Zhou S.	Nat Commun	10.1038/s41467-024-50108-3	2024
Metabolism	Rumen microbial degradation of bromoform from red seaweed (Asparagopsis taxiformis) and the impact on rumen fermentation and methanogenic archaea.	Romero P, Belanche A, Jimenez E, Hueso R, Ramos-Morales E, Salwen JK, Kebreab E, Yanez-Ruiz DR.	J Anim Sci Biotechnol	10.1186/s40104-023-00935-z	2023
	Different outer membrane c-type cytochromes are involved in direct interspecies electron transfer to Geobacter or Methanosarcina species.	Holmes DE, Zhou J, Smith JA, Wang C, Liu X, Lovley DR.	mLife	10.1002/mlf2.12037	2022
	Effect of model methanogens on the electrochemical activity, stability, and microbial community structure of Geobacter spp. dominated biofilm anodes.	Dzofou Ngoumelah D, Heggeset TMB, Haugen T, Sulheim S, Wentzel A, Harnisch F, Kretzschmar J.	NPJ Biofilms Microbiomes	10.1038/s41522-024-00490-z	2024
	Respiration-driven methanotrophic growth of diverse marine methanogens.	Yan Z, Du K, Yan Y, Huang R, Zhu F, Yuan X, Wang S, Ferry JG.	Proc Natl Acad Sci U S A	10.1073/pnas.2303179120	2023
	Solar-driven methanogenesis with ultrahigh selectivity by turning down H₂ production at biotic-abiotic interface.	Ye J, Wang C, Gao C, Fu T, Yang C, Ren G, Lu J, Zhou S, Xiong Y.	Nat Commun	10.1038/s41467-022-34423-1	2022
	Sustained Biotic-Abiotic Hybrids Methanogenesis Enabled Using Metal-Free Black Phosphorus/Carbon Nitride.	Hu A, Fu T, Ren G, Zhuang M, Yuan W, Zhong S, Zhou S.	Front Microbiol	10.3389/fmicb.2022.957066	2022
	Detrimental impact of the Geobacter metallireducens type VI secretion system on direct interspecies electron transfer.	Smith JA, Holmes DE, Woodard TL, Li Y, Liu X, Wang LY, Meier D, Schwarz IA, Lovley DR.	Microbiol Spectr	10.1128/spectrum.00941-23	2023
	Ethane-oxidising archaea couple CO₂ generation to F₄₂₀ reduction.	Lemaire ON, Wegener G, Wagner T.	Nat Commun	10.1038/s41467-024-53338-7	2024
Metabolism	Effect of nickel, cobalt, and iron on methanogenesis from methanol and cometabolic conversion of 1,2-dichloroethene by Methanosarcina barkeri.	Paulo LM, Hidayat MR, Moretti G, Stams AJM, Sousa DZ.	Biotechnol Appl Biochem	10.1002/bab.1925	2020
	Light-driven carbon dioxide reduction to methane by Methanosarcina barkeri in an electric syntrophic coculture.	Huang L, Liu X, Zhang Z, Ye J, Rensing C, Zhou S, Nealson KH.	ISME J	10.1038/s41396-021-01078-7	2022
Metabolism	The hydrogen threshold of obligately methyl-reducing methanogens.	Feldewert C, Lang K, Brune A.	FEMS Microbiol Lett	10.1093/femsle/fnaa137	2020
Metabolism	Data on the optimization of an archaea-specific probe-based qPCR assay.	Bomberg M, Miettinen H.	Data Brief	10.1016/j.dib.2020.106610	2020
Metabolism	Extracellular electron uptake in Methanosarcinales is independent of multiheme c-type cytochromes.	Yee MO, Rotaru AE.	Sci Rep	10.1038/s41598-019-57206-z	2020
	Responses of Methanosarcina barkeri to acetate stress.	He P, Duan H, Han W, Liu Y, Shao L, Lu F.	Biotechnol Biofuels	10.1186/s13068-019-1630-5	2019
	Efficient Photoelectron Capture by Ni Decoration in Methanosarcina barkeri-CdS Biohybrids for Enhanced Photocatalytic CO₂-to-CH₄ Conversion.	Ye J, Ren G, Kang L, Zhang Y, Liu X, Zhou S, He Z.	iScience	10.1016/j.isci.2020.101287	2020
	The complete genome sequence of the rumen methanogen Methanosarcina barkeri CM1.	Lambie SC, Kelly WJ, Leahy SC, Li D, Reilly K, McAllister TA, Valle ER, Attwood GT, Altermann E.	Stand Genomic Sci	10.1186/s40793-015-0038-5	2015
Enzymology	Electron and Proton Flux for Carbon Dioxide Reduction in Methanosarcina barkeri During Direct Interspecies Electron Transfer.	Holmes DE, Rotaru AE, Ueki T, Shrestha PM, Ferry JG, Lovley DR.	Front Microbiol	10.3389/fmicb.2018.03109	2018
	Electron bifurcation and fluoride efflux systems implicated in defluorination of perfluorinated unsaturated carboxylic acids by Acetobacterium spp.	Yu Y, Xu F, Zhao W, Thoma C, Che S, Richman JE, Jin B, Zhu Y, Xing Y, Wackett L, Men Y.	Sci Adv	10.1126/sciadv.ado2957	2024
	Co-cultivation of the strictly anaerobic methanogen Methanosarcina barkeri with aerobic methanotrophs in an oxygen-limited membrane bioreactor.	In 't Zandt MH, van den Bosch TJM, Rijkers R, van Kessel MAHJ, Jetten MSM, Welte CU.	Appl Microbiol Biotechnol	10.1007/s00253-018-9038-x	2018
Metabolism	Potential for Methanosarcina to Contribute to Uranium Reduction during Acetate-Promoted Groundwater Bioremediation.	Holmes DE, Orelana R, Giloteaux L, Wang LY, Shrestha P, Williams K, Lovley DR, Rotaru AE.	Microb Ecol	10.1007/s00248-018-1165-5	2018
Enzymology	Physiological Effects of 2-Bromoethanesulfonate on Hydrogenotrophic Pure and Mixed Cultures.	Logrono W, Nikolausz M, Harms H, Kleinsteuber S.	Microorganisms	10.3390/microorganisms10020355	2022
Metabolism	Stable carbon isotope fractionation by methylotrophic methanogenic archaea.	Penger J, Conrad R, Blaser M.	Appl Environ Microbiol	10.1128/aem.01773-12	2012
Metabolism	Effect of Nickel Levels on Hydrogen Partial Pressure and Methane Production in Methanogens.	Neubeck A, Sjoberg S, Price A, Callac N, Schnurer A.	PLoS One	10.1371/journal.pone.0168357	2016
Metabolism	Secondary Mineralization of Ferrihydrite Affects Microbial Methanogenesis in Geobacter-Methanosarcina Cocultures.	Tang J, Zhuang L, Ma J, Tang Z, Yu Z, Zhou S.	Appl Environ Microbiol	10.1128/aem.01517-16	2016
	Link between capacity for current production and syntrophic growth in Geobacter species.	Rotaru AE, Woodard TL, Nevin KP, Lovley DR.	Front Microbiol	10.3389/fmicb.2015.00744	2015
Metabolism	Direct interspecies electron transfer between Geobacter metallireducens and Methanosarcina barkeri.	Rotaru AE, Shrestha PM, Liu F, Markovaite B, Chen S, Nevin KP, Lovley DR.	Appl Environ Microbiol	10.1128/aem.00895-14	2014
	The origin and evolution of methanogenesis and Archaea are intertwined.	Mei R, Kaneko M, Imachi H, Nobu MK.	PNAS Nexus	10.1093/pnasnexus/pgad023	2023
Metabolism	Necessity of electrically conductive pili for methanogenesis with magnetite stimulation.	Wang O, Zheng S, Wang B, Wang W, Liu F.	PeerJ	10.7717/peerj.4541	2018
Metabolism	Single-cell analysis reveals gene-expression heterogeneity in syntrophic dual-culture of Desulfovibrio vulgaris with Methanosarcina barkeri.	Qi Z, Pei G, Chen L, Zhang W.	Sci Rep	10.1038/srep07478	2014
Metabolism	Promoting interspecies electron transfer with biochar.	Chen S, Rotaru AE, Shrestha PM, Malvankar NS, Liu F, Fan W, Nevin KP, Lovley DR.	Sci Rep	10.1038/srep05019	2014
	Methanosarcina Spherical Virus, a Novel Archaeal Lytic Virus Targeting Methanosarcina Strains.	Weidenbach K, Nickel L, Neve H, Alkhnbashi OS, Kunzel S, Kupczok A, Bauersachs T, Cassidy L, Tholey A, Backofen R, Schmitz RA.	J Virol	10.1128/jvi.00955-17	2017
Metabolism	Effect of substrate concentration on carbon isotope fractionation during acetoclastic methanogenesis by Methanosarcina barkeri and M. acetivorans and in rice field soil.	Goevert D, Conrad R.	Appl Environ Microbiol	10.1128/aem.02680-08	2009
	Unique characteristics of the pyrrolysine system in the 7th order of methanogens: implications for the evolution of a genetic code expansion cassette.	Borrel G, Gaci N, Peyret P, O'Toole PW, Gribaldo S, Brugere JF.	Archaea	10.1155/2014/374146	2014
Phylogeny	Biodiversity of thermophilic prokaryotes with hydrolytic activities in hot springs of Uzon Caldera, Kamchatka (Russia).	Kublanov IV, Perevalova AA, Slobodkina GB, Lebedinsky AV, Bidzhieva SK, Kolganova TV, Kaliberda EN, Rumsh LD, Haertle T, Bonch-Osmolovskaya EA.	Appl Environ Microbiol	10.1128/aem.00607-08	2009
Metabolism	Formation of factor 390 by cell extracts of Methanosarcina barkeri.	van de Wijngaard WM, vermey P, van der Drift C.	J Bacteriol	10.1128/jb.173.8.2710-2711.1991	1991
Metabolism	Protein phosphorylation and its role in archaeal signal transduction.	Esser D, Hoffmann L, Pham TK, Brasen C, Qiu W, Wright PC, Albers SV, Siebers B.	FEMS Microbiol Rev	10.1093/femsre/fuw020	2016
Phylogeny	An antimethanogenic nutritional intervention in early life of ruminants modifies ruminal colonization by Archaea.	Abecia L, Waddams KE, Martinez-Fernandez G, Martin-Garcia AI, Ramos-Morales E, Newbold CJ, Yanez-Ruiz DR.	Archaea	10.1155/2014/841463	2014
	Hydroxydiether Lipid Structures in Methanosarcina spp. and Methanococcus voltae.	Sprott GD, Dicaire CJ, Choquet CG, Patel GB, Ekiel I.	Appl Environ Microbiol	10.1128/aem.59.3.912-914.1993	1993
Genetics	A genetic system for Archaea of the genus Methanosarcina: liposome-mediated transformation and construction of shuttle vectors.	Metcalf WW, Zhang JK, Apolinario E, Sowers KR, Wolfe RS.	Proc Natl Acad Sci U S A	10.1073/pnas.94.6.2626	1997
Metabolism	RamA, a protein required for reductive activation of corrinoid-dependent methylamine methyltransferase reactions in methanogenic archaea.	Ferguson T, Soares JA, Lienard T, Gottschalk G, Krzycki JA.	J Biol Chem	10.1074/jbc.m807392200	2009
Metabolism	Mass-spectrometric studies of the interrelations among hydrogenase, carbon monoxide dehydrogenase, and methane-forming activities in pure and mixed cultures of Desulfovibrio vulgaris, Desulfovibrio desulfuricans, and Methanosarcina barkeri.	Rajagopal BS, Lespinat PA, Fauque G, LeGall J, Berlier YM.	Appl Environ Microbiol	10.1128/aem.55.9.2123-2129.1989	1989
Metabolism	Involvement of an activation protein in the methanol:2-mercaptoethanesulfonic acid methyltransferase reaction in Methanosarcina barkeri.	Daas PJ, Gerrits KA, Keltjens JT, van der Drift C, Vogels GD.	J Bacteriol	10.1128/jb.175.5.1278-1283.1993	1993
Metabolism	Isolation of subunits from Methanosarcina barkeri ATPase: nucleotide-binding site in the alpha subunit.	Inatomi K, Maeda M.	J Bacteriol	10.1128/jb.170.12.5960-5962.1988	1988
Transcriptome	The purine-utilizing bacterium Clostridium acidurici 9a: a genome-guided metabolic reconsideration.	Hartwich K, Poehlein A, Daniel R.	PLoS One	10.1371/journal.pone.0051662	2012
Enzymology	Isolation of two novel corrinoid proteins from acetate-grown Methanosarcina barkeri.	Kremer JD, Cao X, Krzycki J.	J Bacteriol	10.1128/jb.175.15.4824-4833.1993	1993
	Energetics of Growth of a Defined Mixed Culture of Desulfovibrio vulgaris and Methanosarcina barkeri: Interspecies Hydrogen Transfer in Batch and Continuous Cultures.	Traore AS, Fardeau ML, Hatchikian CE, Le Gall J, Belaich JP.	Appl Environ Microbiol	10.1128/aem.46.5.1152-1156.1983	1983
Metabolism	Carbon isotope fractionation of 11 acetogenic strains grown on H2 and CO2.	Blaser MB, Dreisbach LK, Conrad R.	Appl Environ Microbiol	10.1128/aem.03203-12	2013
Metabolism	Reconstitution of trimethylamine-dependent coenzyme M methylation with the trimethylamine corrinoid protein and the isozymes of methyltransferase II from Methanosarcina barkeri.	Ferguson DJ, Krzycki JA.	J Bacteriol	10.1128/jb.179.3.846-852.1997	1997
	Immunological comparison of ribosomal proteins from archaebacteria.	Schmid G, Bock A.	J Bacteriol	10.1128/jb.147.2.282-288.1981	1981
Metabolism	Acetate-dependent methylation of two corrinoid proteins in extracts of Methanosarcina barkeri.	Cao XJ, Krzycki JA.	J Bacteriol	10.1128/jb.173.17.5439-5448.1991	1991
	Bioconversion of Gelatin to Methane by a Coculture of Clostridium collagenovorans and Methanosarcina barkeri.	Jain MK, Zeikus JG.	Appl Environ Microbiol	10.1128/aem.55.2.366-371.1989	1989
	Characterization of the iron-sulfur clusters in ferredoxin from acetate-grown Methanosarcina thermophila.	Clements AP, Kilpatrick L, Lu WP, Ragsdale SW, Ferry JG.	J Bacteriol	10.1128/jb.176.9.2689-2693.1994	1994
Metabolism	MreA functions in the global regulation of methanogenic pathways in Methanosarcina acetivorans.	Reichlen MJ, Vepachedu VR, Murakami KS, Ferry JG.	mBio	10.1128/mbio.00189-12	2012
Enzymology	Clustered genes encoding the methyltransferases of methanogenesis from monomethylamine.	Burke SA, Lo SL, Krzycki JA.	J Bacteriol	10.1128/jb.180.13.3432-3440.1998	1998
Metabolism	Energetics of growth of a defined mixed culture of Desulfovibrio vulgaris and Methanosarcina barkeri: maintenance energy coefficient of the sulfate-reducing organism in the absence and presence of its partner.	Traore AS, Gaudin C, Hatchikian CE, Le Gall J, Belaich JP.	J Bacteriol	10.1128/jb.155.3.1260-1264.1983	1983
	Inhibition of methanogenesis by methyl fluoride: studies of pure and defined mixed cultures of anaerobic bacteria and archaea.	Janssen PH, Frenzel P.	Appl Environ Microbiol	10.1128/aem.63.11.4552-4557.1997	1997
	Effect of sulfate on low-temperature anaerobic digestion.	Madden P, Al-Raei AM, Enright AM, Chinalia FA, de Beer D, O'Flaherty V, Collins G.	Front Microbiol	10.3389/fmicb.2014.00376	2014
Enzymology	Changes in concentrations of coenzyme F420 analogs during batch growth of Methanosarcina barkeri and Methanosarcina mazei.	Peck MW.	Appl Environ Microbiol	10.1128/aem.55.4.940-945.1989	1989
	Genome complexity of methanogenic bacteria.	Klein A, Schnorr M.	J Bacteriol	10.1128/jb.158.2.628-631.1984	1984
	Distinct microbial populations are tightly linked to the profile of dissolved iron in the methanic sediments of the Helgoland mud area, North Sea.	Oni O, Miyatake T, Kasten S, Richter-Heitmann T, Fischer D, Wagenknecht L, Kulkarni A, Blumers M, Shylin SI, Ksenofontov V, Costa BF, Klingelhofer G, Friedrich MW.	Front Microbiol	10.3389/fmicb.2015.00365	2015
Biotechnology	Searching for links in the biotic characteristics and abiotic parameters of nine different biogas plants.	Walter A, Knapp BA, Farbmacher T, Ebner C, Insam H, Franke-Whittle IH.	Microb Biotechnol	10.1111/j.1751-7915.2012.00361.x	2012
	Detection and quantitation of methanogens by enzyme-linked immunosorbent assay.	Archer DB.	Appl Environ Microbiol	10.1128/aem.48.4.797-801.1984	1984
	Spontaneous Disaggregation of Methanosarcina mazei S-6 and Its Use in the Development of Genetic Techniques for Methanosarcina spp.	Harris JE.	Appl Environ Microbiol	10.1128/aem.53.10.2500-2504.1987	1987
Enzymology	Purification and properties of 5,10-methenyltetrahydromethanopterin cyclohydrolase from Methanosarcina barkeri.	te Brommelstroet BW, Hensgens CM, Geerts WJ, Keltjens JT, van der Drift C, Vogels GD.	J Bacteriol	10.1128/jb.172.2.564-571.1990	1990
	Plasmid DNA from the acetotrophic methanogen Methanosarcina acetivorans.	Sowers KR, Gunsalus RP.	J Bacteriol	10.1128/jb.170.10.4979-4982.1988	1988
	Folic acid and pteroylpolyglutamate contents of archaebacteria.	Worrell VE, Nagle DP.	J Bacteriol	10.1128/jb.170.9.4420-4423.1988	1988
Enzymology	Structural aspects and immunolocalization of the F420-reducing and non-F420-reducing hydrogenases from Methanobacterium thermoautotrophicum Marburg.	Braks IJ, Hoppert M, Roge S, Mayer F.	J Bacteriol	10.1128/jb.176.24.7677-7687.1994	1994
	Conversion of Cellulose to Methane and Carbon Dioxide by Triculture of Acetivibrio cellulolyticus, Desulfovibrio sp., and Methanosarcina barkeri.	Laube VM, Martin SM.	Appl Environ Microbiol	10.1128/aem.42.3.413-420.1981	1981
Metabolism	Methanotrophic and Methanogenic Communities in Swiss Alpine Fens Dominated by Carex rostrata and Eriophorum angustifolium.	Cheema S, Zeyer J, Henneberger R.	Appl Environ Microbiol	10.1128/aem.01519-15	2015
Metabolism	Utilization of trimethylamine and other N-methyl compounds for growth and methane formation by Methanosarcina barkeri.	Hippe H, Caspari D, Fiebig K, Gottschalk G.	Proc Natl Acad Sci U S A	10.1073/pnas.76.1.494	1979
Metabolism	Functional analysis of the three TATA binding protein homologs in Methanosarcina acetivorans.	Reichlen MJ, Murakami KS, Ferry JG.	J Bacteriol	10.1128/jb.01165-09	2010
	Anaerobic Degradation of Lactate by Syntrophic Associations of Methanosarcina barkeri and Desulfovibrio Species and Effect of H(2) on Acetate Degradation.	McInerney MJ, Bryant MP.	Appl Environ Microbiol	10.1128/aem.41.2.346-354.1981	1981
Phylogeny	Effect of biowaste sludge maturation on the diversity of thermophilic bacteria and archaea in an anaerobic reactor.	Goberna M, Insam H, Franke-Whittle IH.	Appl Environ Microbiol	10.1128/aem.02260-08	2009
Metabolism	Involvement of the "A" isozyme of methyltransferase II and the 29-kilodalton corrinoid protein in methanogenesis from monomethylamine.	Burke SA, Krzycki JA.	J Bacteriol	10.1128/jb.177.15.4410-4416.1995	1995
Metabolism	Methanogens and the diversity of archaebacteria.	Jones WJ, Nagle DP, Whitman WB.	Microbiol Rev	10.1128/mr.51.1.135-177.1987	1987
	Disaggregation of Methanosarcina spp. and Growth as Single Cells at Elevated Osmolarity.	Sowers KR, Boone JE, Gunsalus RP.	Appl Environ Microbiol	10.1128/aem.59.11.3832-3839.1993	1993
	Hydrophobicities and electrophoretic mobilities of anaerobic bacterial isolates from methanogenic granular sludge.	Grotenhuis JT, Plugge CM, Stams AJ, Zehnder AJ.	Appl Environ Microbiol	10.1128/aem.58.3.1054-1056.1992	1992
Metabolism	Cloning, nucleotide sequence, and transcriptional analyses of the gene encoding a ferredoxin from Methanosarcina thermophila.	Clements AP, Ferry JG.	J Bacteriol	10.1128/jb.174.16.5244-5250.1992	1992
Enzymology	Nickel utilization by microorganisms.	Hausinger RP.	Microbiol Rev	10.1128/mr.51.1.22-42.1987	1987
	Enzyme-Linked Immunosorbent Assays for the Specific and Sensitive Quantification of Methanosarcina mazei and Methanobacterium bryantii.	Kemp HA, Archer DB, Morgan MR.	Appl Environ Microbiol	10.1128/aem.54.4.1003-1008.1988	1988
Phylogeny	Methanogens: reevaluation of a unique biological group.	Balch WE, Fox GE, Magrum LJ, Woese CR, Wolfe RS.	Microbiol Rev	10.1128/mr.43.2.260-296.1979	1979
Enzymology	Bacteriological composition and structure of granular sludge adapted to different substrates.	Grotenhuis JT, Smit M, Plugge CM, Xu YS, van Lammeren AA, Stams AJ, Zehnder AJ.	Appl Environ Microbiol	10.1128/aem.57.7.1942-1949.1991	1991
	Compilation of 5S rRNA and 5S rRNA gene sequences.	Specht T, Wolters J, Erdmann VA.	Nucleic Acids Res	10.1093/nar/18.suppl.2215	1990
Enzymology	Purification and properties of the membrane-associated coenzyme F420-reducing hydrogenase from Methanobacterium formicicum.	Baron SF, Ferry JG.	J Bacteriol	10.1128/jb.171.7.3846-3853.1989	1989
Enzymology	Solubilization and properties of a particulate hydrogenase from Methanobacterium strain G2R.	McKellar RC, Sprott GD.	J Bacteriol	10.1128/jb.139.1.231-238.1979	1979
Metabolism	Genetic organization of the mau gene cluster in Methylobacterium extorquens AM1: complete nucleotide sequence and generation and characteristics of mau mutants.	Chistoserdov AY, Chistoserdova LV, McIntire WS, Lidstrom ME.	J Bacteriol	10.1128/jb.176.13.4052-4065.1994	1994
Proteome	A shift between mineral and nonmineral sources of iron and sulfur causes proteome-wide changes in Methanosarcina barkeri.	Fausset H, Spietz RL, Cox S, Cooper G, Spurzem S, Tokmina-Lukaszewska M, DuBois J, Broderick JB, Shepard EM, Boyd ES, Bothner B.	Microbiol Spectr	10.1128/spectrum.00418-23	2024
	Investigating Abiotic and Biotic Mechanisms of Pyrite Reduction.	Spietz RL, Payne D, Kulkarni G, Metcalf WW, Roden EE, Boyd ES.	Front Microbiol	10.3389/fmicb.2022.878387	2022
	Resonance Raman analysis of intracellular vitamin B₁₂ analogs in methanogenic archaea.	Kanno N, Kato S, Itoh T, Ohkuma M, Shigeto S.	Anal Sci Adv	10.1002/ansa.202100042	2022
	Correlation of Key Physiological Properties of Methanosarcina Isolates with Environment of Origin.	Zhou J, Holmes DE, Tang HY, Lovley DR.	Appl Environ Microbiol	10.1128/aem.00731-21	2021
	Promotion of Nitrogen Fixation of Diverse Heterotrophs by Solid-Phase Humin.	Dey S, Kasai T, Katayama A.	Front Microbiol	10.3389/fmicb.2022.853411	2022
Phylogeny	A Genus Definition for Bacteria and Archaea Based on a Standard Genome Relatedness Index.	Barco RA, Garrity GM, Scott JJ, Amend JP, Nealson KH, Emerson D.	mBio	10.1128/mbio.02475-19	2020
	Humin accelerates interspecies electron transfer between Shewanella oneidensis MR-1 and Methanosarcina barkeri.	Zhou N, Chen D, Xiao Z.	Sci Total Environ	10.1016/j.scitotenv.2024.177643	2024
Transcriptome	Enrichment of Methanothrix species via riboflavin-loaded granular activated carbon in anaerobic digestion of high-concentration brewery wastewater amidst continuous inoculation of Methanosarcina barkeri.	He H, Zeng Y, Dong H, Cui P, Lu W, Xu H, Qiu B, Sun D, Ma J, Dang Y.	Water Res	10.1016/j.watres.2024.122739	2025
Enzymology	Nature AND nurture: enabling formate-dependent growth in Methanosarcina acetivorans.	Bao J, Somvanshi T, Tian Y, Laird MG, Garcia PS, Schone C, Rother M, Borrel G, Scheller S.	FEBS J	10.1111/febs.17409	2025
	Microbial adhesion behavior and participation of adhered and planktonic microorganisms in anaerobic digestion of leaf, epidermis, pith from corn stalk.	Wang L, Xu J, Li C, Hu X, Song C, Liu G, Chen C.	Bioresour Technol	10.1016/j.biortech.2025.132346	2025
	Chemical mechanisms of biogas production from wastewater algal biomass via cobalt-catalysed pyrolysis and methanogenic co-digestion.	Zuo N, He J, Tan X.	PLoS One	10.1371/journal.pone.0321364	2025
	Solar-Driven Methanogenesis through Microbial Ecosystem Engineering on Carbon Nitride.	Kalathil S, Rahaman M, Lam E, Augustin TL, Greer HF, Reisner E.	Angew Chem Int Ed Engl	10.1002/anie.202409192	2024
	Liquid Metal Nanobiohybrids for High-Performance Solar-Driven Methanogenesis via Multi-Interface Engineering.	Gu W, Hu J, Li L, Hong M, Zhang D, Chen J, Ye J, Zhou S.	Angew Chem Int Ed Engl	10.1002/anie.202423336	2025
	Enhanced Extracellular Electron Transfer in Magnetite-Mediated Anaerobic Oxidation of Methane Coupled to Humic Substances Reduction: The Pivotal Role of Membrane-Bound Electron Transfer Proteins.	Liang L, Jin Z, Tao Y, Li Y, Zhao Z, Zhang Y.	Environ Sci Technol	10.1021/acs.est.4c05543	2024
Genetics	Evolutionary Transitions of DNA Replication Origins Between Archaea and Bacteria.	Saranya S, Prathiviraj R, Chellapandi P.	J Basic Microbiol	10.1002/jobm.202400527	2025
	Activated Carbon and Syntrophy Accelerate the Corrosion of Stainless Steel Under Strict Anaerobic Conditions by Methanosarcina barkeri.	Zhou C, Huang S, Li H, Dong H, Zhang H, Chen W, Dang Y.	Microorganisms	10.3390/microorganisms13061278	2025
	Natural AIEgens as Ultraviolet Sunscreens and Photosynergists for Solar Fuel Production.	Gu W, Hu J, Li L, Hong M, Yang C, Ren G, Ye J, Zhou S.	Environ Sci Technol	10.1021/acs.est.4c05605	2024
	Revealing Co-N₄ @Co-NP Bridge-Enabled Fast Charge Transfer and Active Intracellular Methanogenesis in Bio-Electrochemical CO₂ -Conversion with Methanosarcina Barkeri.	Xia R, Cheng J, Chen Z, Zhang Z, Zhou X, Zhou J, Zhang M.	Adv Mater	10.1002/adma.202304920	2023
	Hydrogenotrophic methanogenesis at 7-12 mbar by Methanosarcina barkeri under simulated martian atmospheric conditions.	Harris RL, Schuerger AC.	Sci Rep	10.1038/s41598-025-86145-1	2025
	Non-conductive silicon-containing materials improve methane production by pure cultures of methanogens.	Braga CSN, Martins G, Soares OSGP, Pereira MFR, Pereira IAC, Pereira L, Alves MM, Salvador AF.	Bioresour Technol	10.1016/j.biortech.2024.131144	2024
	Physiological Responses of Methanosarcina barkeri under Ammonia Stress at the Molecular Level: The Unignorable Lipid Reprogramming.	Liu C, Zhang X, Chen C, Yin Y, Zhao G, Chen Y.	Environ Sci Technol	10.1021/acs.est.2c09631	2023
	Impact of mineral and non-mineral sources of iron and sulfur on the metalloproteome of Methanosarcina barkeri.	Larson J, Tokmina-Lukaszewska M, Payne D, Spietz RL, Fausset H, Alam MG, Brekke BK, Pauley J, Hasenoehrl EJ, Shepard EM, Boyd ES, Bothner B.	Appl Environ Microbiol	10.1128/aem.00516-24	2024
Genetics	Metagenomic and physicochemical profiling reveal microbial functions in pit mud for Jiang-Nong Jianxiang Baijiu fermentation.	Cao L, Sun H, Xu Z, Xu X, Shi G, Zhang J, Liang C, Li T, Liu C, Wang M, Tian S, Li E.	BMC Microbiol	10.1186/s12866-025-03884-x	2025
	Methylations with methanol via bioinspired catalytic C-O bond cleavage.	Huang Q, Xiang Y, Wu Y, Zheng Y, Liao RZ, Xie Y.	Nat Commun	10.1038/s41467-025-61200-7	2025
	Ultrastructure of Serratia liquefaciens Grown at 7 mbar Under Simulated Martian Conditions.	Schuerger AC, Kelley KL.	Microorganisms	10.3390/microorganisms13112466	2025
	Anaerobic methane oxidation coupled to ferrihydrite reduction by Methanosarcina barkeri.	Yu L, He D, Yang L, Rensing C, Zeng RJ, Zhou S.	Sci Total Environ	10.1016/j.scitotenv.2022.157235	2022
	Sustainable Conversion of Microplastics to Methane with Ultrahigh Selectivity by a Biotic-Abiotic Hybrid Photocatalytic System.	Ye J, Chen Y, Gao C, Wang C, Hu A, Dong G, Chen Z, Zhou S, Xiong Y.	Angew Chem Int Ed Engl	10.1002/anie.202213244	2022
	A constraint-based framework for exploring the impact of multireaction dependencies on metabolic functions.	Kuken A, Langary D, Angeleska A, Nikoloski Z.	NPJ Syst Biol Appl	10.1038/s41540-025-00608-9	2025
Enzymology	Metabolic Regulation of Mesophilic Methanosarcina barkeri to Ammonium Inhibition.	Duan H, He P, Zhang H, Shao L, Lu F.	Environ Sci Technol	10.1021/acs.est.2c01212	2022
	Metal-Free Semiconductor-Based Bio-Nano Hybrids for Sustainable CO₂ -to-CH₄ Conversion with High Quantum Yield.	Hu A, Ye J, Ren G, Qi Y, Chen Y, Zhou S.	Angew Chem Int Ed Engl	10.1002/anie.202206508	2022
	Influence of oxygen on the vinyl acetate elimination pathway and microbial community structure of methanogenic sludge.	Duran U, Monroy O, Gomez J, Ramirez F.	Water Environ Res	10.1002/wer.1666	2022
	The robustness of porin-cytochrome gene clusters from Geobacter metallireducens in extracellular electron transfer.	Zhuo S, Jiang Y, Qi L, Hu Y, Jiang Z, Dong Y, Shi L.	mBio	10.1128/mbio.00580-24	2024
	Accelerated enumeration of extreme rays through a positive-definite elementarity test.	Mores W, Bhonsale SS, Logist F, Van Impe JFM.	Bioinformatics	10.1093/bioinformatics/btae723	2024
Enzymology	Methanogens acquire and bioaccumulate nickel during reductive dissolution of nickelian pyrite.	Spietz RL, Payne D, Boyd ES.	Appl Environ Microbiol	10.1128/aem.00991-23	2023
Genetics	PyCoMo: a python package for community metabolic model creation and analysis.	Predl M, Miesskes M, Rattei T, Zanghellini J.	Bioinformatics	10.1093/bioinformatics/btae153	2024
	Methanosarcina acetivorans requires methanol:coenzyme M methyltransferases for ethane formation from ethanol.	Somvanshi T, Tran MA, Bao J, Scheller S.	Antonie Van Leeuwenhoek	10.1007/s10482-025-02165-x	2025
	Enhancement of direct interspecies electron transfer and methane production by co-culture of dual Methanosarcina species and Geobacter metallireducens.	Liu L, Li P, Dong H, Liu C, Li H, Ma Z, Li R, Dang Y.	Front Microbiol	10.3389/fmicb.2025.1604265	2025
Enzymology	The Radical SAM Heme Synthase AhbD from Methanosarcina barkeri Contains Two Auxiliary [4Fe-4S] Clusters.	Fix I, Heidinger L, Friedrich T, Layer G.	Biomolecules	10.3390/biom13081268	2023
Genetics	Impacts of combined water-saving irrigation and controlled-release urea on CH₄ emission and its associated microbial communities and function.	Ma C, Wu J, Li F.	Sci Total Environ	10.1016/j.scitotenv.2022.154724	2022
	Self-replicating Biophotoelectrochemistry System for Sustainable CO Methanation.	Wang C, Yu J, Ren G, Hu A, Liu X, Chen Y, Ye J, Zhou S, He Z.	Environ Sci Technol	10.1021/acs.est.1c08340	2022
Genetics	Deciphering the microbial communities of alkaline hot spring in Panamik, Ladakh, India using a high-throughput sequencing approach.	Choudhary G, Kumari S, Anu K, Devi S.	Braz J Microbiol	10.1007/s42770-024-01346-6	2024
Metabolism	Substrate-dependent incorporation of carbon and hydrogen for lipid biosynthesis by Methanosarcina barkeri.	Wu W, Meador TB, Konneke M, Elvert M, Wegener G, Hinrichs KU.	Environ Microbiol Rep	10.1111/1758-2229.12876	2020
Enzymology	Structural and Spectroscopic Insights into Catalytic Intermediates of a [NiFe]-hydrogenase from Group 3.	Jespersen M, Lorent C, Lemaire ON, Zebger I, Wagner T.	Chembiochem	10.1002/cbic.202500692	2025
Metabolism	Kinetic and substrate complex characterization of RamA, a corrinoid protein reductive activase from Methanosarcina barkeri.	Huening KA, Jiang R, Krzycki JA.	FEMS Microbiol Lett	10.1093/femsle/fnaa128	2020
Genetics	Microbial adaptation and response to high ammonia concentrations and precipitates during anaerobic digestion under psychrophilic and mesophilic conditions.	Quispe-Cardenas E, Rogers S.	Water Res	10.1016/j.watres.2021.117596	2021
	Formation of Zerovalent Iron in Iron-Reducing Cultures of Methanosarcina barkeri.	Shang H, Daye M, Sivan O, Borlina CS, Tamura N, Weiss BP, Bosak T.	Environ Sci Technol	10.1021/acs.est.0c01595	2020
Metabolism	Adaptation of Methanosarcina barkeri 227 as acetate scavenger for succinate fermentation by Actinobacillus succinogenes.	Kim SN, Cho YB, Park JW, Kim OB.	Appl Microbiol Biotechnol	10.1007/s00253-020-10494-2	2020
	Effects of soil texture on microbial community composition and abundance under alternate wetting and drying in paddy soils of central Thailand.	Arunrat N, Sereenonchai S, Uttarotai T.	Sci Rep	10.1038/s41598-025-09843-w	2025
	Structural organization of pyruvate: ferredoxin oxidoreductase from the methanogenic archaeon Methanosarcina acetivorans.	Cossu M, Catlin D, Elliott SJ, Metcalf WW, Nair SK.	Structure	10.1016/j.str.2024.08.011	2024
	Potential Role of Methanogens in Microbial Reductive Dechlorination of Organic Chlorinated Pollutants In Situ.	Yuan J, Li S, Cheng J, Guo C, Shen C, He J, Yang Y, Hu P, Xu J, He Y.	Environ Sci Technol	10.1021/acs.est.0c08631	2021
	Methanogenic archaea encoding Pyrrolysine maintain ambiguous amber codon usage.	Shalvarjian KE, Chadwick GL, Perez PI, Woods PH, Orphan VJ, Nayak DD.	Proc Natl Acad Sci U S A	10.1073/pnas.2517473122	2025
	Theoretical characterisation of electron tunnelling from granular activated carbon to electron accepting organisms in direct interspecies electron transfer.	Rao R, Hu J, Lee PH.	Sci Rep	10.1038/s41598-022-15606-8	2022
	Carbon nanotubes accelerate acetoclastic methanogenesis: From pure cultures to anaerobic soils	Xiao L, Zheng S, Lichtfouse E, Luo M, Tan Y, Liu F.	Soil Biol Biochem	10.1016/j.soilbio.2020.107938	2020
Genetics	Metagenomic Analysis of Surface Waters and Wastewater in the Colombian Andean Highlands: Implications for Health and Disease.	Urrea V, Paez-Triana L, Velasquez-Ortiz N, Camargo M, Patino LH, Vega L, Ballesteros N, Hidalgo-Troya A, Galeano LA, Ramirez JD, Munoz M.	Curr Microbiol	10.1007/s00284-024-04019-7	2025
	An evolved pyrrolysyl-tRNA synthetase with polysubstrate specificity expands the toolbox for engineering enzymes with incorporation of noncanonical amino acids.	Liu K, Jiang L, Ma S, Song Z, Wang L, Zhang Q, Xu R, Yang L, Wu J, Yu H.	Bioresour Bioprocess	10.1186/s40643-023-00712-w	2023
	Development of orthogonal aminoacyl-tRNA synthetase mutant for incorporating a non-canonical amino acid.	Lee D, Kim JG, Kim TW, Choi JI.	AMB Express	10.1186/s13568-024-01706-3	2024
	The inclusion of insect meal from Hermetia illucens larvae in the diet of laying hens (Hy-line Brown) affects the caecal diversity of methanogenic archaea.	Mahayri TM, Mrazek J, Bovera F, Piccolo G, Murgia GA, Moniello G, Fliegerova KO.	Poult Sci	10.1016/j.psj.2025.105037	2025
	Fully Productive Cell-Free Genetic Code Expansion by Structure-Based Engineering of Methanomethylophilus alvus Pyrrolysyl-tRNA Synthetase.	Seki E, Yanagisawa T, Kuratani M, Sakamoto K, Yokoyama S.	ACS Synth Biol	10.1021/acssynbio.9b00288	2020
	Predicting the polyspecificity of aminoacyl-tRNA synthetase for non-canonical amino acids using molecular dynamics simulation and MM/PBSA.	Lee D, Choi JI.	PLoS One	10.1371/journal.pone.0316907	2025
	Pyrrolysine Aminoacyl-tRNA Synthetase as a Tool for Expanding the Genetic Code.	Dakhnevich A, Kazakova A, Iliushin D, Ivanov RA.	Int J Mol Sci	10.3390/ijms26020539	2025
	A Genetically Encoded Homocysteine Precursor to Probe Protein Active Sites and to Addict Escherichia coli to a Noncanonical Amino Acid Directly Involved in Catalysis.	Dunker C, Mootz HD.	Angew Chem Int Ed Engl	10.1002/anie.202509112	2025
	Rapid shift in greenhouse forcing of emerging arctic peatlands.	Christensen TR, Scheller J, Scheel M, Rudd DA, Jackowicz-Korczynski M, Mastepanov M, Lopez-Blanco E.	Sci Rep	10.1038/s41598-023-29859-4	2023
Phylogeny	Genome reduction in novel, obligately methyl-reducing Methanosarcinales isolated from arthropod guts (Methanolapillus gen. nov. and Methanimicrococcus).	Protasov E, Reeh H, Liu P, Poehlein A, Platt K, Heimerl T, Herve V, Daniel R, Brune A.	FEMS Microbiol Ecol	10.1093/femsec/fiae111	2024
	Isotopologue Ratios Identify ¹³C-Depleted Biomarkers in Environmental Samples Impacted by Methane Turnover.	Groninga J, Lipp J, Song M, Hinrichs KU.	Rapid Commun Mass Spectrom	10.1002/rcm.10118	2025
	ModE Regulates Alternative Nitrogenase Expression in the Methanogen Methanosarcina acetivorans.	Chanderban M, Lessner DJ.	Mol Microbiol	10.1111/mmi.15377	2025
Genetics	Methanolobus use unspecific methyltransferases to produce methane from dimethylsulphide in Baltic Sea sediments.	Tsola SL, Zhu Y, Chen Y, Sanders IA, Economou CK, Bruchert V, Eyice O.	Microbiome	10.1186/s40168-023-01720-w	2024
	Sulfur-tetrazine as highly efficient visible-light activatable photo-trigger for designing photoactivatable fluorescence biomolecules.	Yang S, Zhang M, Loredo A, Soares D, Wu Y, Xiao H.	J Mater Chem B	10.1039/d4tb01817f	2024
	An unnatural amino acid dependent, conditional Pseudomonas vaccine prevents bacterial infection.	Pigula M, Lai YC, Koh M, Diercks CS, Rogers TF, Dik DA, Schultz PG.	Nat Commun	10.1038/s41467-024-50843-7	2024
	Structures of Methanomethylophilus alvus Pyrrolysine tRNA-Synthetases Support the Need for De Novo Selections When Altering the Substrate Specificity.	Gottfried-Lee I, Perona JJ, Karplus PA, Mehl RA, Cooley RB.	ACS Chem Biol	10.1021/acschembio.2c00640	2022
	Effects of temperature, chloride and perchlorate salt concentration on the metabolic activity of Deinococcus radiodurans.	Symeonidou E, Jorgensen UG, Madsen MB, Prieme A.	Extremophiles	10.1007/s00792-024-01351-5	2024
Enzymology	Capturing a methanogenic carbon monoxide dehydrogenase/acetyl-CoA synthase complex via cryogenic electron microscopy.	Biester A, Grahame DA, Drennan CL.	Proc Natl Acad Sci U S A	10.1073/pnas.2410995121	2024
	Pyruvate-dependent growth of Methanosarcina acetivorans.	Richter M, Sattler C, Schone C, Rother M.	J Bacteriol	10.1128/jb.00363-23	2024
	An efficient pyrrolysyl-tRNA synthetase for economical production of MeHis-containing enzymes.	Hutton AE, Foster J, Sanders JEJ, Taylor CJ, Hoffmann SA, Cai Y, Lovelock SL, Green AP.	Faraday Discuss	10.1039/d4fd00019f	2024
Genetics	Structure and metabolic function of spatiotemporal pit mud microbiome.	Li Z, Zhao C, Mao Z, Zhang F, Dong L, Song C, Chen Y, Fu X, Ao Z, Xiong Y, Hui Q, Song W, Penttinen P, Zhang S.	Environ Microbiome	10.1186/s40793-025-00668-8	2025
Transcriptome	Physiological and transcriptomic response to methyl-coenzyme M reductase limitation in Methanosarcina acetivorans.	Chadwick GL, Dury GA, Nayak DD.	Appl Environ Microbiol	10.1128/aem.02220-23	2024
Enzymology	In vitro methanol production from methyl coenzyme M using the Methanosarcina barkeri MtaABC protein complex.	Dong M, Gonzalez TD, Klems MM, Steinberg LM, Chen W, Papoutsakis ET, Bahnson BJ.	Biotechnol Prog	10.1002/btpr.2503	2017
	Mitigation of ammonia inhibition through bioaugmentation with different microorganisms during anaerobic digestion: Selection of strains and reactor performance evaluation.	Yang Z, Wang W, Liu C, Zhang R, Liu G.	Water Res	10.1016/j.watres.2019.02.048	2019
	Genetic and Physiological Probing of Cytoplasmic Bypasses for the Energy-Converting Methyltransferase Mtr in Methanosarcina acetivorans.	Schone C, Poehlein A, Rother M.	Appl Environ Microbiol	10.1128/aem.02161-22	2023
Enzymology	Mutational and structural studies of (betaalpha)₈-barrel fold methylene-tetrahydropterin reductases utilizing a common catalytic mechanism.	Gehl M, Demmer U, Ermler U, Shima S.	Protein Sci	10.1002/pro.5018	2024
Metabolism	Streptomyces albus: A New Cell Factory for Non-Canonical Amino Acids Incorporation into Ribosomally Synthesized Natural Products.	Lopatniuk M, Myronovskyi M, Luzhetskyy A.	ACS Chem Biol	10.1021/acschembio.7b00359	2017
	Insights into pyrrolysine function from structures of a trimethylamine methyltransferase and its corrinoid protein complex.	Li J, Kang PT, Jiang R, Lee JY, Soares JA, Krzycki JA, Chan MK.	Commun Biol	10.1038/s42003-022-04397-3	2023
Genetics	Methanomethylovorans are the dominant dimethylsulfide-degrading methanogens in gravel and sandy river sediment microcosms.	Tsola SL, Prevodnik AA, Sinclair LF, Sanders IA, Economou CK, Eyice O.	Environ Microbiome	10.1186/s40793-024-00591-4	2024
Enzymology	Trapping the substrate radical of heme synthase AhbD.	Heidinger L, Fix I, Friedrich T, Layer G.	Front Chem	10.3389/fchem.2024.1430796	2024
Metabolism	Response of Methanogenic Archaea from Siberian Permafrost and Non-permafrost Environments to Simulated Mars-like Desiccation and the Presence of Perchlorate.	Serrano P, Alawi M, de Vera JP, Wagner D.	Astrobiology	10.1089/ast.2018.1877	2019
	Understanding the sources, function, and irreplaceable role of cobamides in organohalide-respiring bacteria.	Lu Y, Lu F, Zhang J, Tang Q, Yang D, Liu Y.	Front Microbiol	10.3389/fmicb.2024.1435674	2024
	A robust platform streamlining aromatic noncanonical amino acid biosynthesis and genetic code expansion in Escherichia coli.	Zhang J, Yu K, Xu Y, Zhao W, Li Y, Wang Y, Seebeck FP, Chen XH, Liao C.	Nat Commun	10.1038/s41467-025-63679-6	2025
	Carbon-13 stable isotope analysis reveals the existence but insignificance of ruminal methanogenic pathway from acetate in a batch culture system	He ZX, Qiao JY, Tan ZL, Wang M.	Anim Feed Sci Technol	10.1016/j.anifeedsci.2018.10.002	2018
Genetics	- Invited Review - Ruminal ciliates as modulators of the rumen microbiome.	Park T.	Anim Biosci	10.5713/ab.23.0309	2024
	Modeling reveals a metabolic basis of competition among Dehalobacter strains during tandem chloroform and dichloromethane metabolism.	Bulka O, Edwards EA, Mahadevan R.	mSystems	10.1128/msystems.00847-25	2025
	One-pot dual protein labeling for simultaneous mechanical and fluorescent readouts in optical tweezers.	Silbermann LM, Fottner M, van der Meulen R, Migdad N, Lang K, Tych K.	Protein Sci	10.1002/pro.70098	2025
	Orthogonal Protein Translation Using Pyrrolysyl-tRNA Synthetases for Single- and Multiple-Noncanonical Amino Acid Mutagenesis.	Baumann T, Exner M, Budisa N.	Adv Biochem Eng Biotechnol	10.1007/10_2016_37	2018
	Methane Production and Conductive Materials: A Critical Review.	Martins G, Salvador AF, Pereira L, Alves MM.	Environ Sci Technol	10.1021/acs.est.8b01913	2018
	Engineering a non-oxidative glycolysis pathway in escherichia coli for high-level citramalate production.	Wang T, Ding L, Luo H, Huang H, Su X, Bai Y, Tu T, Wang Y, Qin X, Zhang H, Wang Y, Yao B, Zhang J, Wang X.	Microb Cell Fact	10.1186/s12934-024-02505-y	2024
	Genetic code expansion and enzymatic modifications as accessible methods for studying site-specific post-translational modifications of alpha-synuclein and tau.	Saleh IG, Shimogawa M, Ramirez J, Abakah B, Venkatesh Y, James HP, Li MH, Louie SA, Lougee MG, Chia WK, Brue C, Cooley RB, Mehl RA, Baumgart T, Mach RH, Eliezer D, Rhoades E, Petersson EJ.	Protein Sci	10.1002/pro.70302	2025
Enzymology	The Hydrogen Economy of Methanosarcina barkeri: Life in the Fast Lane.	Lovley DR.	J Bacteriol	10.1128/jb.00445-18	2018
	Crystal Structure of Pyrrolysyl-tRNA Synthetase from a Methanogenic Archaeon ISO4-G1 and Its Structure-Based Engineering for Highly-Productive Cell-Free Genetic Code Expansion with Non-Canonical Amino Acids.	Yanagisawa T, Seki E, Tanabe H, Fujii Y, Sakamoto K, Yokoyama S.	Int J Mol Sci	10.3390/ijms24076256	2023
	Transcriptional response to prolonged perchlorate exposure in the methanogen Methanosarcina barkeri and implications for Martian habitability.	Harris RL, Schuerger AC, Wang W, Tamama Y, Garvin ZK, Onstott TC.	Sci Rep	10.1038/s41598-021-91882-0	2021
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Genetics	Magnetite drives microbial community restructuring and stimulates aceticlastic methanogenesis of type II Methanosarcina in mangrove sediments.	Zhou J, Zhang CJ, Zou D, Gu C, Li M.	Microbiome	10.1186/s40168-025-02157-z	2025
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Metabolism	Quantitative evaluation of ruminal methane and carbon dioxide formation from formate through C-13 stable isotope analysis in a batch culture system.	He ZX, Qiao JY, Yan QX, Tan ZL, Wang M.	Animal	10.1017/s1751731118000691	2019
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Metabolism	Anaerobic Production of Isoprene by Engineered Methanosarcina Species Archaea.	Aldridge J, Carr S, Weber KA, Buan NR.	Appl Environ Microbiol	10.1128/aem.02417-20	2021
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Metabolism	Magnetite production and transformation in the methanogenic consortia from coastal riverine sediments.	Zheng S, Wang B, Liu F, Wang O.	J Microbiol	10.1007/s12275-017-7104-1	2017
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Metabolism	X-ray Crystallography and Vibrational Spectroscopy Reveal the Key Determinants of Biocatalytic Dihydrogen Cycling by [NiFe] Hydrogenases.	Ilina Y, Lorent C, Katz S, Jeoung JH, Shima S, Horch M, Zebger I, Dobbek H.	Angew Chem Int Ed Engl	10.1002/anie.201908258	2019
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Genetics	Deciphering Microbial Communities and Distinct Metabolic Pathways in the Tangyin Hydrothermal Fields of Okinawa Trough through Metagenomic and Genomic Analyses.	Li J, Cheng H, Yin F, Liu J, Zhang XH, Yu M.	Microorganisms	10.3390/microorganisms12030517	2024
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Enzymology	Structural Insights into the Methane-Generating Enzyme from a Methoxydotrophic Methanogen Reveal a Restrained Gallery of Post-Translational Modifications.	Kurth JM, Muller MC, Welte CU, Wagner T.	Microorganisms	10.3390/microorganisms9040837	2021
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Enzymology	Identification of a novel archaea virus, detected in hydrocarbon polluted Hungarian and Canadian samples.	Molnar J, Magyar B, Schneider G, Laczi K, Valappil SK, Kovacs AL, Nagy IK, Rakhely G, Kovacs T.	PLoS One	10.1371/journal.pone.0231864	2020
Lipids	Bilayer-Forming Lipids Enhance Archaeal Monolayer Membrane Stability.	Saracco M, Schaeffer P, Tourte M, Albers SV, Louis Y, Peters J, Deme B, Fontanay S, Oger PM.	Int J Mol Sci	10.3390/ijms26073045	2025
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Metabolism	Effective methane production from the Japanese weed Gyougi-shiba (Cynodon dactylon) is accomplished by colocalization of microbial communities that assimilate water-soluble and -insoluble fractions.	Matsuda S, Ohtsuki T.	FEMS Microbiol Lett	10.1093/femsle/fnab015	2021
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Genetics	Unveiling the Biodiversity of Hyperthermophilic Archaea in Jharia Coal Mines: Potential Threat to Methanogenesis?	Jha P, Singh J, Vidyarthi AS, Prasad R.	Curr Genomics	10.2174/1389202921999200605151722	2020
Metabolism	Transferability of N-terminal mutations of pyrrolysyl-tRNA synthetase in one species to that in another species on unnatural amino acid incorporation efficiency.	Williams TL, Iskandar DJ, Nodling AR, Tan Y, Luk LYP, Tsai YH.	Amino Acids	10.1007/s00726-020-02927-z	2021
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Genetics	Metagenomic Exploration Uncovers Several Novel 'Candidatus' Species Involved in Acetate Metabolism in High-Ammonia Thermophilic Biogas Processes.	Cheng GB, Bongcam-Rudloff E, Schnurer A.	Microb Biotechnol	10.1111/1751-7915.70133	2025
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Genetics	Metapangenomic investigation provides insight into niche differentiation of methanogenic populations from the subsurface serpentinizing environment, Samail Ophiolite, Oman.	Thieringer PH, Boyd ES, Templeton AS, Spear JR.	Front Microbiol	10.3389/fmicb.2023.1205558	2023
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Genetics	Enhanced Electron Uptake and Methane Production by Corrosive Methanogens during Electromethanogenesis.	Mayer F, Sabel-Becker B, Holtmann D.	Microorganisms	10.3390/microorganisms10112237	2022
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Enzymology	Genetic, Biochemical, and Molecular Characterization of Methanosarcina barkeri Mutants Lacking Three Distinct Classes of Hydrogenase.	Mand TD, Kulkarni G, Metcalf WW.	J Bacteriol	10.1128/jb.00342-18	2018
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Metabolism	Comparative Transcriptomics Sheds Light on Remodeling of Gene Expression during Diazotrophy in the Thermophilic Methanogen Methanothermococcus thermolithotrophicus.	Maslac N, Sidhu C, Teeling H, Wagner T.	mBio	10.1128/mbio.02443-22	2022
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Enzymology	Origin, Diversity, and Multiple Roles of Enzymes with Metallo-beta-Lactamase Fold from Different Organisms.	Diene SM, Pontarotti P, Azza S, Armstrong N, Pinault L, Chabriere E, Colson P, Rolain JM, Raoult D.	Cells	10.3390/cells12131752	2023
	Expression of divergent methyl/alkyl coenzyme M reductases from uncultured archaea.	Shao N, Fan Y, Chou CW, Yavari S, Williams RV, Amster IJ, Brown SM, Drake IJ, Duin EC, Whitman WB, Liu Y.	Commun Biol	10.1038/s42003-022-04057-6	2022
Metabolism	Efficient Site-Specific Prokaryotic and Eukaryotic Incorporation of Halotyrosine Amino Acids into Proteins.	Jang HS, Gu X, Cooley RB, Porter JJ, Henson RL, Willi T, DiDonato JA, Hazen SL, Mehl RA.	ACS Chem Biol	10.1021/acschembio.9b01026	2020
Metabolism	Methanogenic Archaea Can Produce Methane in Deliquescence-Driven Mars Analog Environments.	Maus D, Heinz J, Schirmack J, Airo A, Kounaves SP, Wagner D, Schulze-Makuch D.	Sci Rep	10.1038/s41598-019-56267-4	2020
	An Expanded Genetic Code Enables Trimethylamine Metabolism in Human Gut Bacteria.	Kivenson V, Giovannoni SJ.	mSystems	10.1128/msystems.00413-20	2020
	Methyl-Based Methanogenesis: an Ecological and Genomic Review.	Bueno de Mesquita CP, Wu D, Tringe SG.	Microbiol Mol Biol Rev	10.1128/mmbr.00024-22	2023
Metabolism	A new family of uncultivated bacteria involved in methanogenesis from the ubiquitous osmolyte glycine betaine in coastal saltmarsh sediments.	Jones HJ, Krober E, Stephenson J, Mausz MA, Jameson E, Millard A, Purdy KJ, Chen Y.	Microbiome	10.1186/s40168-019-0732-4	2019
Metabolism	Inhibitory Effect of Coumarin on Syntrophic Fatty Acid-Oxidizing and Methanogenic Cultures and Biogas Reactor Microbiomes.	Popp D, Plugge CM, Kleinsteuber S, Harms H, Strauber H.	Appl Environ Microbiol	10.1128/aem.00438-17	2017
Metabolism	Sodium ion translocation and ATP synthesis in methanogens.	Schlegel K, Muller V.	Methods Enzymol	10.1016/b978-0-12-385112-3.00012-3	2011
Phylogeny	Identification of two archaeal GDGT lipid-modifying proteins reveals diverse microbes capable of GMGT biosynthesis and modification.	Garcia AA, Chadwick GL, Liu XL, Welander PV.	Proc Natl Acad Sci U S A	10.1073/pnas.2318761121	2024
	Adenylyl Cyclase (AC) Mediates the Antidepressant-Like Effects of Tropisetron on a Mouse Model of Maternal Separation Stress.	Hosseinzadeh A, Boroujeni SN, Saghaei E, Loriooini Z, Dehkordi SH, Balali-Dehkordi S, Rahimi-Madiseh M, Amini-Khoei H.	Depress Res Treat	10.1155/2021/5586119	2021
	Thg1 family 3'-5' RNA polymerases as tools for targeted RNA synthesis.	Jayasinghe MI, Patel KJ, Jackman JE.	RNA	10.1261/rna.080156.124	2024
Metabolism	Physiological Evidence for Isopotential Tunneling in the Electron Transport Chain of Methane-Producing Archaea.	Duszenko N, Buan NR.	Appl Environ Microbiol	10.1128/aem.00950-17	2017
	Engineering mutually orthogonal PylRS/tRNA pairs for dual encoding of functional histidine analogues.	Taylor CJ, Hardy FJ, Burke AJ, Bednar RM, Mehl RA, Green AP, Lovelock SL.	Protein Sci	10.1002/pro.4640	2023
	Genetic methods for methanosarcina species.	Buan N, Kulkarni G, Metcalf W.	Methods Enzymol	10.1016/b978-0-12-385112-3.00002-0	2011
	Biological methane production and accumulation under sulfate-rich conditions at Cape Lookout Bight, NC.	Coon GR, Duesing PD, Paul R, Baily JA, Lloyd KG.	Front Microbiol	10.3389/fmicb.2023.1268361	2023
Metabolism	Impact of temperature, microwave radiation and organic loading rate on methanogenic community and biogas production during fermentation of dairy wastewater.	Zielinska M, Cydzik-Kwiatkowska A, Zielinski M, Debowski M.	Bioresour Technol	10.1016/j.biortech.2012.11.093	2013
Metabolism	Global transcriptomics analysis of the Desulfovibrio vulgaris change from syntrophic growth with Methanosarcina barkeri to sulfidogenic metabolism.	Plugge CM, Scholten JCM, Culley DE, Nie L, Brockman FJ, Zhang W.	Microbiology (Reading)	10.1099/mic.0.038539-0	2010
	Pretreatments of Broussonetia papyrifera: in vitro assessment on gas and methane production, fermentation characteristic, and methanogenic archaea profile.	Dong L, Gao Y, Jing X, Guo H, Zhang H, Lai Q, Diao Q.	Anim Biosci	10.5713/ajas.20.0503	2022
Phylogeny	Selective trace elements significantly enhanced methane production in coal bed methane systems by stimulating microbial activity.	Chin K-J, Unal B, Sanderson M, Aboderin F, Nusslein K.	Microbiol Spectr	10.1128/spectrum.03508-23	2024
	Electron Transfer in the Biogeochemical Sulfur Cycle.	Zhuang X, Wang S, Wu S.	Life (Basel)	10.3390/life14050591	2024
Enzymology	Phylogenetic diversity of putative nickel-containing carbon monoxide dehydrogenase-encoding prokaryotes in the human gut microbiome.	Katayama YA, Kamikawa R, Yoshida T.	Microb Genom	10.1099/mgen.0.001285	2024
Genetics	Simple Porifera holobiont reveals complex interactions between the host, an archaeon, a bacterium, and a phage.	Garritano AN, Zhang Z, Jia Y, Allen MA, Hill LJ, Kuzhiumparambil U, Hinkley C, Raina JB, Peixoto RS, Thomas T.	ISME J	10.1093/ismejo/wrae197	2024
Pathogenicity	[Effect of a corrinoid on Methanosarcina barkeri DNA synthesis].	Ryzhkova EP, Briukhanov AL.	Mikrobiologiia	10.1134/s0026261709010019	2009
	Expanding the Zebrafish Genetic Code through Site-Specific Introduction of Azido-lysine, Bicyclononyne-lysine, and Diazirine-lysine.	Syed J, Palani S, Clarke ST, Asad Z, Bottrill AR, Jones AME, Sampath K, Balasubramanian MK.	Int J Mol Sci	10.3390/ijms20102577	2019
	Identification of key steps in the evolution of anaerobic methanotrophy in Candidatus Methanovorans (ANME-3) archaea.	Woods PH, Speth DR, Laso-Perez R, Utter DR, Ruff SE, Orphan VJ.	Sci Adv	10.1126/sciadv.adq5232	2025
Metabolism	Laboratory-scale bioaugmentation relieves acetate accumulation and stimulates methane production in stalled anaerobic digesters.	Town JR, Dumonceaux TJ.	Appl Microbiol Biotechnol	10.1007/s00253-015-7058-3	2016
	Generation of Premature Termination Codon (PTC)-Harboring Pseudorabies Virus (PRV) via Genetic Code Expansion Technology.	Wang TY, Sang GJ, Wang Q, Leng CL, Tian ZJ, Peng JM, Wang SJ, Sun MX, Meng FD, Zheng H, Cai XH, Tang YD.	Viruses	10.3390/v14030572	2022
	Light-independent anaerobic microbial oxidation of manganese driven by an electrosyntrophic coculture.	Huang L, Liu X, Rensing C, Yuan Y, Zhou S, Nealson KH.	ISME J	10.1038/s41396-022-01335-3	2023
	Expanding the Diet for DIET: Electron Donors Supporting Direct Interspecies Electron Transfer (DIET) in Defined Co-Cultures.	Wang LY, Nevin KP, Woodard TL, Mu BZ, Lovley DR.	Front Microbiol	10.3389/fmicb.2016.00236	2016
	CalDAG-GEFI acts as a guanine nucleotide exchange factor for LRRK2 to regulate LRRK2 function and neurodegeneration.	Liu Q, Huang B, Guiberson NGL, Chen S, Zhu D, Ma G, Ma XM, Crittenden JR, Yu J, Graybiel AM, Dawson TM, Dawson VL, Xiong Y.	Sci Adv	10.1126/sciadv.adn5417	2024
	Minimizing the Anticodon-Recognized Loop of Methanococcus jannaschii Tyrosyl-tRNA Synthetase to Improve the Efficiency of Incorporating Noncanonical Amino Acids.	Hu Z, Liang J, Su T, Zhang D, Li H, Gao X, Yao W, Song X.	Biomolecules	10.3390/biom13040610	2023
Genetics	Functional comparison of metabolic networks across species.	Ramon C, Stelling J.	Nat Commun	10.1038/s41467-023-37429-5	2023
	Microbial drivers of DMSO reduction and DMS-dependent methanogenesis in saltmarsh sediments.	Tebbe DA, Gruender C, Dlugosch L, Lohmus K, Rolfes S, Konneke M, Chen Y, Engelen B, Schafer H.	ISME J	10.1038/s41396-023-01539-1	2023
	Photocatalytic Material-Microorganism Hybrid System and Its Application-A Review.	Song J, Lin H, Zhao G, Huang X.	Micromachines (Basel)	10.3390/mi13060861	2022
	Proteomic Analysis of Methanococcus voltae Grown in the Presence of Mineral and Nonmineral Sources of Iron and Sulfur.	Steward KF, Payne D, Kincannon W, Johnson C, Lensing M, Fausset H, Nemeth B, Shepard EM, Broderick WE, Broderick JB, Dubois J, Bothner B.	Microbiol Spectr	10.1128/spectrum.01893-22	2022
Genetics	Magnetite Alters the Metabolic Interaction between Methanogens and Sulfate-Reducing Bacteria.	Giangeri G, Tsapekos P, Gaspari M, Ghofrani-Isfahani P, Hong Lin MKT, Treu L, Kougias P, Campanaro S, Angelidaki I.	Environ Sci Technol	10.1021/acs.est.3c05948	2023
	Dual-mode harvest solar energy for photothermal Cu_2-xSe biomineralization and seawater desalination by biotic-abiotic hybrid.	Gong SL, Tian Y, Sheng GP, Tian LJ.	Nat Commun	10.1038/s41467-024-48660-z	2024
	Methanogenesis in the sediments of Rio Tinto, an extreme acidic river.	Sanz JL, Rodriguez N, Diaz EE, Amils R.	Environ Microbiol	10.1111/j.1462-2920.2011.02504.x	2011
	COD removal from expanded granular sludge bed effluent using a moving bed biofilm reactor and their microbial community analysis	Fu B, Liao X, Liang R, Ding L, Xu K, Ren H.	World J Microbiol Biotechnol	10.1007/s11274-010-0534-0	2011
	Dual expression of CCA-adding enzyme and RNase T in Escherichia coli generates a distinct cca growth phenotype with diverse applications.	Wellner K, Pohler MT, Betat H, Morl M.	Nucleic Acids Res	10.1093/nar/gkz133	2019
Metabolism	Microbial carbon use efficiency predicted from genome-scale metabolic models.	Saifuddin M, Bhatnagar JM, Segre D, Finzi AC.	Nat Commun	10.1038/s41467-019-11488-z	2019
	Molecular characterization of microorganisms with industrial potential for methane production in sludge from Kangemi sewage treatment plant, Nyeri county-Kenya.	Kimisto AK, Muia AW, Ong'ondo GO, Ndung'u KC.	Heliyon	10.1016/j.heliyon.2023.e15715	2023
Enzymology	DsrMKJOP is the terminal reductase complex in anaerobic sulfate respiration.	Barbosa ACC, Venceslau SS, Pereira IAC.	Proc Natl Acad Sci U S A	10.1073/pnas.2313650121	2024
	Expression of V-nitrogenase and Fe-nitrogenase in Methanosarcina acetivorans is controlled by molybdenum, fixed nitrogen, and the expression of Mo-nitrogenase.	Chanderban M, Hill CA, Dhamad AE, Lessner DJ.	Appl Environ Microbiol	10.1128/aem.01033-23	2023
Enzymology	Genetic encoding and labeling of aliphatic azides and alkynes in recombinant proteins via a pyrrolysyl-tRNA Synthetase/tRNA(CUA) pair and click chemistry.	Nguyen DP, Lusic H, Neumann H, Kapadnis PB, Deiters A, Chin JW.	J Am Chem Soc	10.1021/ja900553w	2009
	Diverse protein manipulations with genetically encoded glutamic acid benzyl ester.	Yang X, Miao H, Xiao R, Wang L, Zhao Y, Wu Q, Ji Y, Du J, Qin H, Xuan W.	Chem Sci	10.1039/d1sc01882e	2021
Metabolism	Methanogen diversity in the rumen of Indian Surti buffalo (Bubalus bubalis), assessed by 16S rDNA analysis.	Singh KM, Tripathi AK, Pandya PR, Parnerkar S, Rank DN, Kothari RK, Joshi CG.	Res Vet Sci	10.1016/j.rvsc.2011.03.022	2012
	Discovery and Genetic Code Expansion of a Polyethylene Terephthalate (PET) Hydrolase from the Human Saliva Metagenome for the Degradation and Bio-Functionalization of PET.	Eiamthong B, Meesawat P, Wongsatit T, Jitdee J, Sangsri R, Patchsung M, Aphicho K, Suraritdechachai S, Huguenin-Dezot N, Tang S, Suginta W, Paosawatyanyong B, Babu MM, Chin JW, Pakotiprapha D, Bhanthumnavin W, Uttamapinant C.	Angew Chem Int Ed Engl	10.1002/anie.202203061	2022
	Growth rate-dependent coordination of catabolism and anabolism in the archaeon Methanococcus maripaludis under phosphate limitation.	Gu W, Muller AL, Deutzmann JS, Williamson JR, Spormann AM.	ISME J	10.1038/s41396-022-01278-9	2022
Metabolism	Destabilase-lysozyme of medicinal leech. Multifunctionality of recombinant protein.	Zavalova LL, Lazarev VN, Levitsky SA, Yudina TG, Baskova IP.	Biochemistry (Mosc)	10.1134/s0006297910090129	2010
	Grazing exclusion alters soil methane flux and methanotrophic and methanogenic communities in alpine meadows on the Qinghai-Tibet Plateau.	Wang S, Chen X, Li W, Gong W, Wang Z, Cao W.	Front Microbiol	10.3389/fmicb.2023.1293720	2023
Metabolism	Genetic, Genomic, and Transcriptomic Studies of Pyruvate Metabolism in Methanosarcina barkeri Fusaro.	Lopez Munoz MM, Schonheit P, Metcalf WW.	J Bacteriol	10.1128/jb.00551-15	2015
	Novel Methanobacterium Strain Induces Severe Corrosion by Retrieving Electrons from Fe⁰ under a Freshwater Environment.	Hirano SI, Ihara S, Wakai S, Dotsuta Y, Otani K, Kitagaki T, Ueno F, Okamoto A.	Microorganisms	10.3390/microorganisms10020270	2022
	Structural and mechanistic basis of the central energy-converting methyltransferase complex of methanogenesis.	Aziz I, Kayastha K, Kaltwasser S, Vonck J, Welsch S, Murphy BJ, Kahnt J, Wu D, Wagner T, Shima S, Ermler U.	Proc Natl Acad Sci U S A	10.1073/pnas.2315568121	2024
Genetics	Response of soil microbial compositional and functional heterogeneity to grazing exclusion in alpine shrub and meadows in the Qinghai-Tibet Plateau.	Wang S, Abalori TA, Wang W, Deng X, Liu W, Wang J, Cao W.	Front Microbiol	10.3389/fmicb.2022.1038805	2022
	An Unnatural Amino Acid-Regulated Growth Controller Based on Informational Disturbance.	Kato Y.	Life (Basel)	10.3390/life11090920	2021
Phylogeny	Biome-specific distribution of Ni-containing carbon monoxide dehydrogenases.	Inoue M, Omae K, Nakamoto I, Kamikawa R, Yoshida T, Sako Y.	Extremophiles	10.1007/s00792-022-01259-y	2022
Metabolism	Substrate Profiling of Mitochondrial Caseinolytic Protease P via a Site-Specific Photocrosslinking Approach.	Nguyen TA, Gronauer TF, Nast-Kolb T, Sieber SA, Lang K.	Angew Chem Int Ed Engl	10.1002/anie.202111085	2022
Genetics	Comparing flux balance analysis to network expansion: producibility, sustainability and the scope of compounds.	Kruse K, Ebenhoh O.	Genome Inform	10.1142/9781848163003_0008	2008
	Ultrafast Bioorthogonal Spin-Labeling and Distance Measurements in Mammalian Cells Using Small, Genetically Encoded Tetrazine Amino Acids.	Jana S, Evans EGB, Jang HS, Zhang S, Zhang H, Rajca A, Gordon SE, Zagotta WN, Stoll S, Mehl RA.	J Am Chem Soc	10.1021/jacs.3c00967	2023
Enzymology	Expanding the phylogenetic distribution of cytochrome b-containing methanogenic archaea sheds light on the evolution of methanogenesis.	Ou YF, Dong HP, Dong HP, McIlroy SJ, Crowe SA, Hallam SJ, Han P, Kallmeyer J, Simister RL, Vuillemin A, Leu AO, Liu Z, Zheng YL, Sun QL, Liu M, Tyson GW, Hou LJ.	ISME J	10.1038/s41396-022-01281-0	2022
Metabolism	Flux networks in metabolic graphs.	Warren PB, Queiros SM, Jones JL.	Phys Biol	10.1088/1478-3975/6/4/046006	2009
Enzymology	Carbon Monoxide Production during Bio-Waste Composting under Different Temperature and Aeration Regimes.	Sobieraj K, Stegenta-Dabrowska S, Zafiu C, Binner E, Bialowiec A.	Materials (Basel)	10.3390/ma16134551	2023
Genetics	A Genome-Scale Metabolic Model of Methanoperedens nitroreducens: Assessing Bioenergetics and Thermodynamic Feasibility.	He B, Cai C, McCubbin T, Muriel JC, Sonnenschein N, Hu S, Yuan Z, Marcellin E.	Metabolites	10.3390/metabo12040314	2022
Metabolism	Characterization of variations within the rumen metaproteome of Holstein dairy cattle relative to morning feed offering.	Honan MC, Greenwood SL.	Sci Rep	10.1038/s41598-020-59974-5	2020
	Genetic Code Expansion in Animals.	Brown W, Liu J, Deiters A.	ACS Chem Biol	10.1021/acschembio.8b00520	2018
Metabolism	Expression of a bacterial catalase in a strictly anaerobic methanogen significantly increases tolerance to hydrogen peroxide but not oxygen.	Jennings ME, Schaff CW, Horne AJ, Lessner FH, Lessner DJ.	Microbiology (Reading)	10.1099/mic.0.070763-0	2014
	Functional Group Distribution of the Carrier Surface Influences Adhesion of Methanothermobacter thermautotrophicus.	Umetsu M, Sunouchi T, Fukuda Y, Takahashi H, Tada C.	Archaea	10.1155/2020/9432803	2020
Metabolism	Recognition between tRNASer and archaeal seryl-tRNA synthetases monitored by suppression of bacterial amber mutations.	Lesjak S, Weygand-Durasevic I.	FEMS Microbiol Lett	10.1111/j.1574-6968.2009.01560.x	2009
	Structural flexibility of the methanogenic-type seryl-tRNA synthetase active site and its implication for specific substrate recognition.	Bilokapic S, Rokov Plavec J, Ban N, Weygand-Durasevic I.	FEBS J	10.1111/j.1742-4658.2008.06423.x	2008
	Potential metabolic and genetic interaction among viruses, methanogen and methanotrophic archaea, and their syntrophic partners.	Wang L, Wang Y, Huang X, Ma R, Li J, Wang F, Jiao N, Zhang R.	ISME Commun	10.1038/s43705-022-00135-2	2022
	Absence of oxygen effect on microbial structure and methane production during drying and rewetting events.	Liu T, Li X, Yekta SS, Bjorn A, Mu BZ, Masuda LSM, Schnurer A, Enrich-Prast A.	Sci Rep	10.1038/s41598-022-20448-5	2022
	Enrichment of rare methanogenic Archaea shows their important ecological role in natural high-CO₂ terrestrial subsurface environments.	Jia Z, Lipus D, Burckhardt O, Bussert R, Sondermann M, Bartholomaus A, Wagner D, Kallmeyer J.	Front Microbiol	10.3389/fmicb.2023.1105259	2023
Metabolism	A Ferredoxin Disulfide Reductase Delivers Electrons to the Methanosarcina barkeri Class III Ribonucleotide Reductase.	Wei Y, Li B, Prakash D, Ferry JG, Elliott SJ, Stubbe J.	Biochemistry	10.1021/acs.biochem.5b01092	2015
Metabolism	Identification of syntrophic acetate-oxidizing bacteria in anaerobic digesters by combined protein-based stable isotope probing and metagenomics.	Mosbaek F, Kjeldal H, Mulat DG, Albertsen M, Ward AJ, Feilberg A, Nielsen JL.	ISME J	10.1038/ismej.2016.39	2016
Metabolism	The alternative route to heme in the methanogenic archaeon Methanosarcina barkeri.	Kuhner M, Haufschildt K, Neumann A, Storbeck S, Streif J, Layer G.	Archaea	10.1155/2014/327637	2014
Metabolism	Methanogenic archaea use a bacteria-like methyltransferase system to demethoxylate aromatic compounds.	Kurth JM, Nobu MK, Tamaki H, de Jonge N, Berger S, Jetten MSM, Yamamoto K, Mayumi D, Sakata S, Bai L, Cheng L, Nielsen JL, Kamagata Y, Wagner T, Welte CU.	ISME J	10.1038/s41396-021-01025-6	2021
	Ancestral archaea expanded the genetic code with pyrrolysine.	Guo LT, Amikura K, Jiang HK, Mukai T, Fu X, Wang YS, O'Donoghue P, Soll D, Tharp JM.	J Biol Chem	10.1016/j.jbc.2022.102521	2022
	MecE, MecB, and MecC proteins orchestrate methyl group transfer during dichloromethane fermentation.	Soder-Walz JM, Deobald D, Vicent T, Marco-Urrea E, Adrian L.	Appl Environ Microbiol	10.1128/aem.00978-24	2024
Metabolism	The catalase and superoxide dismutase genes are transcriptionally up-regulated upon oxidative stress in the strictly anaerobic archaeon Methanosarcina barkeri.	Brioukhanov AL, Netrusov AI, Eggen RIL.	Microbiology (Reading)	10.1099/mic.0.28542-0	2006
	Evolution of the syntrophic interaction between Desulfovibrio vulgaris and Methanosarcina barkeri: Involvement of an ancient horizontal gene transfer.	Scholten JC, Culley DE, Brockman FJ, Wu G, Zhang W.	Biochem Biophys Res Commun	10.1016/j.bbrc.2006.10.164	2007
	A widespread group of large plasmids in methanotrophic Methanoperedens archaea.	Schoelmerich MC, Ouboter HT, Sachdeva R, Penev PI, Amano Y, West-Roberts J, Welte CU, Banfield JF.	Nat Commun	10.1038/s41467-022-34588-9	2022
Genetics	Species-resolved, single-cell respiration rates reveal dominance of sulfate reduction in a deep continental subsurface ecosystem.	Lindsay MR, D'Angelo T, Munson-McGee JH, Saidi-Mehrabad A, Devlin M, McGonigle J, Goodell E, Herring M, Lubelczyk LC, Mascena C, Brown JM, Gavelis G, Liu J, Yousavich DJ, Hamilton-Brehm SD, Hedlund BP, Lang S, Treude T, Poulton NJ, Stepanauskas R, Moser DP, Emerson D, Orcutt BN.	Proc Natl Acad Sci U S A	10.1073/pnas.2309636121	2024
Metabolism	Electron Transfer to Nitrogenase in Different Genomic and Metabolic Backgrounds.	Poudel S, Colman DR, Fixen KR, Ledbetter RN, Zheng Y, Pence N, Seefeldt LC, Peters JW, Harwood CS, Boyd ES.	J Bacteriol	10.1128/jb.00757-17	2018
	- Invited Review - Understanding the functionality of the rumen microbiota: searching for better opportunities for rumen microbial manipulation.	Qi W, Xue MY, Jia MH, Zhang S, Yan Q, Sun HZ.	Anim Biosci	10.5713/ab.23.0308	2024
	Augmenting Biogas Process Modeling by Resolving Intracellular Metabolic Activity.	Weinrich S, Koch S, Bonk F, Popp D, Benndorf D, Klamt S, Centler F.	Front Microbiol	10.3389/fmicb.2019.01095	2019
Transcriptome	DNA microarray analysis of anaerobic Methanosarcina barkeri reveals responses to heat shock and air exposure.	Zhang W, Culley DE, Nie L, Brockman FJ.	J Ind Microbiol Biotechnol	10.1007/s10295-006-0114-3	2006
Metabolism	Evaluation of methanogenic treatment of TMAH (tetra-methyl ammonium hydroxide) in a full-scale TFT-LCD wastewater treatment process.	Hu TH, Whang LM, Lei CN, Chen CF, Chiang TY, Lin LB, Chen HW, Liu PW, Cheng SS.	Water Sci Technol	10.2166/wst.2010.284	2010
Metabolism	Effect of microwave irradiated Methanosarcina barkeri DSM-804 on biomethanation.	Banik S, Bandyopadhyay S, Ganguly S, Dan D.	Bioresour Technol	10.1016/j.biortech.2005.04.032	2006
Genetics	Activity-based, genome-resolved metagenomics uncovers key populations and pathways involved in subsurface conversions of coal to methane.	McKay LJ, Smith HJ, Barnhart EP, Schweitzer HD, Malmstrom RR, Goudeau D, Fields MW.	ISME J	10.1038/s41396-021-01139-x	2022
Enzymology	Optimization of RNA isolation from the archaebacterium Methanosarcina barkeri and validation for oligonucleotide microarray analysis.	Culley DE, Kovacik WP, Brockman FJ, Zhang W.	J Microbiol Methods	10.1016/j.mimet.2006.02.014	2006
	A novel viral vaccine platform based on engineered transfer RNA.	Wang TY, Meng FD, Sang GJ, Zhang HL, Tian ZJ, Zheng H, Cai XH, Tang YD.	Emerg Microbes Infect	10.1080/22221751.2022.2157339	2023
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Metabolism	Cross-Feedings, Competition, and Positive and Negative Synergies in a Four-Species Synthetic Community for Anaerobic Degradation of Cellulose to Methane.	Wang D, Hunt KA, Candry P, Tao X, Wofford NQ, Zhou J, McInerney MJ, Stahl DA, Tanner RS, Zhou A, Winkler M, Pan C.	mBio	10.1128/mbio.03189-22	2023
	Genetically encoded chemical crosslinking of carbohydrate.	Li S, Wang N, Yu B, Sun W, Wang L.	Nat Chem	10.1038/s41557-022-01059-z	2023
Metabolism	Genetic code expansion in mammalian cells: A plasmid system comparison.	Zhou W, Wesalo JS, Liu J, Deiters A.	Bioorg Med Chem	10.1016/j.bmc.2020.115772	2020
Metabolism	gapseq: informed prediction of bacterial metabolic pathways and reconstruction of accurate metabolic models.	Zimmermann J, Kaleta C, Waschina S.	Genome Biol	10.1186/s13059-021-02295-1	2021
Genetics	Time-shifted expression of acetoclastic and methylotrophic methanogenesis by a single Methanosarcina genomospecies predominates the methanogen dynamics in Philippine rice field soil.	Li X, Bei Q, Rabiei Nematabad M, Peng J, Liesack W.	Microbiome	10.1186/s40168-023-01739-z	2024
Metabolism	Encoding multiple unnatural amino acids via evolution of a quadruplet-decoding ribosome.	Neumann H, Wang K, Davis L, Garcia-Alai M, Chin JW.	Nature	10.1038/nature08817	2010
	The effects of temperature shock on the treatment of high-concentration organic wastewater by an Fe⁰/GO-anaerobic system.	Wang X, Lin Y, Wang L, Yang D, Lan H.	RSC Adv	10.1039/d1ra04773f	2021
Metabolism	Formaldehyde activating enzyme (Fae) and hexulose-6-phosphate synthase (Hps) in Methanosarcina barkeri: a possible function in ribose-5-phosphate biosynthesis.	Goenrich M, Thauer RK, Yurimoto H, Kato N.	Arch Microbiol	10.1007/s00203-005-0008-1	2005
Genetics	The Complete Genome of a Novel Typical Species Thiocapsa bogorovii and Analysis of Its Central Metabolic Pathways.	Petushkova E, Khasimov M, Mayorova E, Delegan Y, Frantsuzova E, Bogun A, Galkina E, Tsygankov A.	Microorganisms	10.3390/microorganisms12020391	2024
	Genetic Encoding and Enzymatic Deprotection of a Latent Thiol Side Chain to Enable New Protein Bioconjugation Applications.	Reille-Seroussi M, Meyer-Ahrens P, Aust A, Feldberg AL, Mootz HD.	Angew Chem Int Ed Engl	10.1002/anie.202102343	2021
Metabolism	Survival of methanogens during desiccation: implications for life on Mars.	Kendrick MG, Kral TA.	Astrobiology	10.1089/ast.2006.6.546	2006
Enzymology	Assignment of the [4Fe-4S] clusters of Ech hydrogenase from Methanosarcina barkeri to individual subunits via the characterization of site-directed mutants.	Forzi L, Koch J, Guss AM, Radosevich CG, Metcalf WW, Hedderich R.	FEBS J	10.1111/j.1742-4658.2005.04889.x	2005
	Influence of dietary carbohydrate profile on the dairy cow rumen meta-proteome.	Mulakala BK, Smith KM, Snider MA, Ayers A, Honan MC, Greenwood SL.	J Dairy Sci	10.3168/jds.2022-21812	2022
	Genetic Incorporation of Two Mutually Orthogonal Bioorthogonal Amino Acids That Enable Efficient Protein Dual-Labeling in Cells.	Bednar RM, Jana S, Kuppa S, Franklin R, Beckman J, Antony E, Cooley RB, Mehl RA.	ACS Chem Biol	10.1021/acschembio.1c00649	2021
Phylogeny	A Novel Archaeal Lineage in Boiling Hot Springs around Oyasukyo Gorge (Akita, Japan).	Asamatsu K, Yoshitake K, Saito M, Prasitwuttisak W, Ishibashi JI, Tsutsumi A, Mustapha NA, Maeda T, Yanagawa K.	Microbes Environ	10.1264/jsme2.me21048	2021
	Efficient Amber Suppression via Ribosomal Skipping for In Situ Synthesis of Photoconditional Nanobodies.	Joest EF, Winter C, Wesalo JS, Deiters A, Tampe R.	ACS Synth Biol	10.1021/acssynbio.1c00471	2022
	Comparative Metagenomic Analysis of Electrogenic Microbial Communities in Differentially Inoculated Swine Wastewater-Fed Microbial Fuel Cells.	Khilyas IV, Sorokin AA, Kiseleva L, Simpson DJW, Fedorovich V, Sharipova MR, Kainuma M, Cohen MF, Goryanin I.	Scientifica (Cairo)	10.1155/2017/7616359	2017
	Stimulatory Effect of Magnetite Nanoparticles on a Highly Enriched Butyrate-Oxidizing Consortium.	Fu L, Song T, Zhang W, Zhang J, Lu Y.	Front Microbiol	10.3389/fmicb.2018.01480	2018
Phylogeny	Isolation and characterization of fast-growing green snow bacteria from coastal East Antarctica.	Smirnova M, Miamin U, Kohler A, Valentovich L, Akhremchuk A, Sidarenka A, Dolgikh A, Shapaval V.	Microbiologyopen	10.1002/mbo3.1152	2021
Enzymology	Exploring Structure and Function of Redox Intermediates in [NiFe]-Hydrogenases by an Advanced Experimental Approach for Solvated, Lyophilized and Crystallized Metalloenzymes.	Lorent C, Pelmenschikov V, Frielingsdorf S, Schoknecht J, Caserta G, Yoda Y, Wang H, Tamasaku K, Lenz O, Cramer SP, Horch M, Lauterbach L, Zebger I.	Angew Chem Int Ed Engl	10.1002/anie.202100451	2021
	Hydrogenotrophs-Based Biological Biogas Upgrading Technologies.	Antukh T, Lee I, Joo S, Kim H.	Front Bioeng Biotechnol	10.3389/fbioe.2022.833482	2022
Metabolism	CO2 reduction to the level of formylmethanofuran in Methanosarcina barkeri is non-energy driven when CO is the electron donor.	Stojanowic A, Hedderich R.	FEMS Microbiol Lett	10.1016/j.femsle.2004.04.028	2004
Metabolism	Differential modes of transfer RNASer recognition in Methanosarcina barkeri.	Korencic D, Polycarpo C, Weygand-Durasevic I, Soll D.	J Biol Chem	10.1074/jbc.m408753200	2004
	Light-guided intrabodies for on-demand in situ target recognition in human cells.	Joest EF, Winter C, Wesalo JS, Deiters A, Tampe R.	Chem Sci	10.1039/d1sc01331a	2021
Metabolism	Metatranscriptomic Evidence for Magnetite Nanoparticle-Stimulated Acetoclastic Methanogenesis under Continuous Agitation.	Inaba R, Nagoya M, Kouzuma A, Watanabe K.	Appl Environ Microbiol	10.1128/aem.01733-19	2019
	Thermodynamic modelling of synthetic communities predicts minimum free energy requirements for sulfate reduction and methanogenesis.	Delattre H, Chen J, Wade MJ, Soyer OS.	J R Soc Interface	10.1098/rsif.2020.0053	2020
	The hidden simplicity of metabolic networks is revealed by multireaction dependencies.	Kuken A, Langary D, Nikoloski Z.	Sci Adv	10.1126/sciadv.abl6962	2022
	Two Distinct Thermodynamic Gradients for Cellular Metalation of Vitamin B₁₂.	Young TR, Deery E, Foster AW, Martini MA, Osman D, Warren MJ, Robinson NJ.	JACS Au	10.1021/jacsau.3c00119	2023
Metabolism	Inhibition of methanogenesis by interaction of aluminium ion with co-factor, F-420, in Methanosarcina barkeri.	Chattopadhyay BD, Thakur AR.	Indian J Exp Biol		2003
Metabolism	Improvement of Direct Interspecies Electron Transfer via Adding Conductive Materials in Anaerobic Digestion: Mechanisms, Performances, and Challenges.	Chen L, Fang W, Chang J, Liang J, Zhang P, Zhang G.	Front Microbiol	10.3389/fmicb.2022.860749	2022
Metabolism	Energy conservation involving 2 respiratory circuits.	Schoelmerich MC, Katsyv A, Donig J, Hackmann TJ, Muller V.	Proc Natl Acad Sci U S A	10.1073/pnas.1914939117	2020
Metabolism	Molecular characterization of polychlorinated biphenyl-dechlorinating populations in contaminated sediments.	Oh KH, Ostrofsky EB, Cho YC.	J Microbiol	10.1007/s12275-007-0214-4	2008
Metabolism	Ribosomal intergenic spacer analysis as a tool for monitoring methanogenic Archaea changes in an anaerobic digester.	Ciesielski S, Bulkowska K, Dabrowska D, Kaczmarczyk D, Kowal P, Mozejko J.	Curr Microbiol	10.1007/s00284-013-0353-2	2013
	Culture adaptation for enhanced biogas production from birch wood applying stable carbon isotope analysis to monitor changes in the microbial community.	Hashemi S, Solli L, Lien KM, Lamb JJ, Horn SJ.	Biotechnol Biofuels Bioprod	10.1186/s13068-023-02328-w	2023
Phylogeny	The structure of the bacterial and archaeal community in a biogas digester as revealed by denaturing gradient gel electrophoresis and 16S rDNA sequencing analysis.	Liu FH, Wang SB, Zhang JS, Zhang J, Yan X, Zhou HK, Zhao GP, Zhou ZH.	J Appl Microbiol	10.1111/j.1365-2672.2008.04064.x	2009
	Cuticular competing endogenous RNAs regulate insecticide penetration and resistance in a major agricultural pest.	Meng LW, Yuan GR, Chen ML, Zheng LS, Dou W, Peng Y, Bai WJ, Li ZY, Vontas J, Wang JJ.	BMC Biol	10.1186/s12915-023-01694-z	2023
	Stimulating Effect of Trichococcus flocculiformis on a Coculture of Syntrophomonas wolfei and Methanospirillum hungatei.	Doloman A, Boeren S, Miller CD, Sousa DZ.	Appl Environ Microbiol	10.1128/aem.00391-22	2022
	Presence of a human Hyaluronan binding protein 1 (HABP1) pseudogene-like sequence in Methanosarcina barkeri suggests its linkage in evolution.	Sengupta A, Ghosh I, Mallick J, Thakur AR, Datta K.	DNA Cell Biol	10.1089/104454904323090930	2004
	Biogenic formation of amorphous carbon by anaerobic methanotrophs and select methanogens.	Allen KD, Wegener G, Matthew Sublett D, Bodnar RJ, Feng X, Wendt J, White RH.	Sci Adv	10.1126/sciadv.abg9739	2021
	Expanding the genetic code of the human hematopoietic system.	Shao S, Koh M, Schultz PG.	Proc Natl Acad Sci U S A	10.1073/pnas.1914408117	2020
	Direct inhibition of methanogenesis by ferric iron.	Bodegom PM, Scholten JC, Stams AJ.	FEMS Microbiol Ecol	10.1016/j.femsec.2004.03.017	2004
	Desiccation as a long-term survival mechanism for the archaeon Methanosarcina barkeri.	Anderson KL, Apolinario EE, Sowers KR.	Appl Environ Microbiol	10.1128/aem.06964-11	2012
	BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities.	Bauer E, Zimmermann J, Baldini F, Thiele I, Kaleta C.	PLoS Comput Biol	10.1371/journal.pcbi.1005544	2017
	Application of metaproteomic analysis for studying extracellular polymeric substances (EPS) in activated sludge flocs and their fate in sludge digestion.	Park C, Helm RF.	Water Sci Technol	10.2166/wst.2008.620	2008
	A non-canonical nucleophile unlocks a new mechanistic pathway in a designed enzyme.	Hutton AE, Foster J, Crawshaw R, Hardy FJ, Johannissen LO, Lister TM, Gerard EF, Birch-Price Z, Obexer R, Hay S, Green AP.	Nat Commun	10.1038/s41467-024-46123-z	2024
	Does Addition of Phosphate and Ammonium Nutrients Affect Microbial Activity in Froth Treatment Affected Tailings?	Ramsay JA, de Lima E Silva MR, Tawadrous MAR, Ramsay BA.	Microorganisms	10.3390/microorganisms9112224	2021
	Evidence for the existence in mRNAs of a hairpin element responsible for ribosome dependent pyrrolysine insertion into proteins.	Theobald-Dietrich A, Giege R, Rudinger-Thirion J.	Biochimie	10.1016/j.biochi.2005.03.006	2005
Enzymology	Chimeric Interaction of Nitrogenase-Like Reductases with the MoFe Protein of Nitrogenase.	Jasper J, Ramos JV, Trncik C, Jahn D, Einsle O, Layer G, Moser J.	Chembiochem	10.1002/cbic.201900759	2020
Metabolism	Post-translational modifications in the active site region of methyl-coenzyme M reductase from methanogenic and methanotrophic archaea.	Kahnt J, Buchenau B, Mahlert F, Kruger M, Shima S, Thauer RK.	FEBS J	10.1111/j.1742-4658.2007.06016.x	2007
	Possible involvement of NMDA receptor in the anxiolytic-like effect of caffeic acid in mice model of maternal separation stress.	Lorigooini Z, Nasiri Boroujeni S, Balali-Dehkordi S, Ebrahimi L, Bijad E, Rahimi-Madiseh M, Amini-Khoei H.	Heliyon	10.1016/j.heliyon.2020.e04833	2020
	Anaerobic oxidation of methane coupled with extracellular electron transfer to electrodes.	Gao Y, Lee J, Neufeld JD, Park J, Rittmann BE, Lee HS.	Sci Rep	10.1038/s41598-017-05180-9	2017
	Effects of nickel and cobalt on methane production and methanogen abundance and diversity in paddy soil.	Wang T, Li Z, Chen X, Long XE.	PeerJ	10.7717/peerj.6274	2019
	Safety and efficacy of the Mycoplasma synoviae MS-H vaccine in turkeys.	Noormohammadi AH, Hemmatzadeh F, Whithear KG.	Avian Dis	10.1637/0005-2086(2007)51[550:saeotm]2.0.co;2	2007
	Microbiome signature and diversity regulates the level of energy production under anaerobic condition.	Rahman MS, Hoque MN, Puspo JA, Islam MR, Das N, Siddique MA, Hossain MA, Sultana M.	Sci Rep	10.1038/s41598-021-99104-3	2021
Enzymology	Genetically Directed Production of Recombinant, Isosteric and Nonhydrolysable Ubiquitin Conjugates.	Stanley M, Virdee S.	Chembiochem	10.1002/cbic.201600138	2016
	Synergistic Effects of 3-Nitrooxypropanol with Fumarate in the Regulation of Propionate Formation and Methanogenesis in Dairy Cows In Vitro.	Liu Z, Wang K, Nan X, Cai M, Yang L, Xiong B, Zhao Y.	Appl Environ Microbiol	10.1128/aem.01908-21	2022
Metabolism	Subtractive hybridization and random arbitrarily primed PCR analyses of a benzoate-assimilating bacterium, Desulfotignum balticum.	Habe H, Kobuna A, Hosoda A, Kouzuma A, Yamane H, Nojiri H, Omori T, Watanabe K.	Appl Microbiol Biotechnol	10.1007/s00253-008-1414-5	2008
Enzymology	Crystallographic and mutational studies of seryl-tRNA synthetase from the archaeon Pyrococcus horikoshii.	Itoh Y, Sekine S, Kuroishi C, Terada T, Shirouzu M, Kuramitsu S, Yokoyama S.	RNA Biol	10.4161/rna.5.3.6876	2008
Genetics	Pathogen Metagenomics Reveals Distinct Lung Microbiota Signatures Between Bacteriologically Confirmed and Negative Tuberculosis Patients.	Ding L, Liu Y, Wu X, Wu M, Luo X, Ouyang H, Xia J, Liu X, Ding T.	Front Cell Infect Microbiol	10.3389/fcimb.2021.708827	2021
Metabolism	Tetrahydrofolate-specific enzymes in Methanosarcina barkeri and growth dependence of this methanogenic archaeon on folic acid or p-aminobenzoic acid.	Buchenau B, Thauer RK.	Arch Microbiol	10.1007/s00203-004-0714-0	2004
	Regulation of IL-24/IL-20R2 complex formation using photocaged tyrosines and UV light.	Pham PN, Zahradnik J, Kolarova L, Schneider B, Fuertes G.	Front Mol Biosci	10.3389/fmolb.2023.1214235	2023
Metabolism	Lysine-acetylation as a fundamental regulator of Ran function: Implications for signaling of proteins of the Ras-superfamily.	Knyphausen P, Kuhlmann N, de Boor S, Lammers M.	Small GTPases	10.1080/21541248.2015.1103399	2015
	Effect of heavy ion irradiation on DNA DSB repair in Methanosarcina barkeri.	Raychaudhuri S, Karmakar P, Choudhary D, Sarma A, Thakur AR.	Anaerobe	10.1016/s1075-9964(03)00027-1	2003
Metabolism	[Susceptibility of archaea to the antibiotic effect of the parasporal inclusion proteins from Bacillus thuringiensis subspecies].	Iudina TG, Briukhanov AL, Netrusov AI.	Mikrobiologiia	10.1023/b:mici.0000016362.55398.82	2004
Genetics	Optimizing Strategies for Bio-Based Ethanol Production Using Genome-Scale Metabolic Modeling of the Hyperthermophilic Archaeon, Pyrococcus furiosus.	Vailionis JL, Zhao W, Zhang K, Rodionov DA, Lipscomb GL, Tanwee TNN, O'Quinn HC, Bing RG, Kelly RM, Adams MWW, Zhang Y.	Appl Environ Microbiol	10.1128/aem.00563-23	2023
	Visualizing an Allosteric Intermediate Using CuAAC Stabilization of an NMR Mixed Labeled Dimer.	Sapienza PJ, Currie MM, Lancaster NM, Li K, Aube J, Goldfarb D, Cloer EW, Major MB, Lee AL.	ACS Chem Biol	10.1021/acschembio.1c00617	2021
	Light-activation of Cre recombinase in zebrafish embryos through genetic code expansion.	Brown W, Deiters A.	Methods Enzymol	10.1016/bs.mie.2019.04.004	2019
	Identification of the major expressed S-layer and cell surface-layer-related proteins in the model methanogenic archaea: Methanosarcina barkeri Fusaro and Methanosarcina acetivorans C2A.	Rohlin L, Leon DR, Kim U, Loo JA, Ogorzalek Loo RR, Gunsalus RP.	Archaea	10.1155/2012/873589	2012
	Aptamer-programmable adeno-associated viral vectors as a novel platform for cell-specific gene transfer.	Puzzo F, Zhang C, Powell Gray B, Zhang F, Sullenger BA, Kay MA.	Mol Ther Nucleic Acids	10.1016/j.omtn.2023.01.007	2023
	Data of metal and microbial analyses from anaerobic co-digestion of organic and mineral wastes.	Shamurad B, Gray N, Petropoulos E, Tabraiz S, Acharya K, Quintela-Baluja M, Sallis P.	Data Brief	10.1016/j.dib.2019.103934	2019
	Cellular Site-Specific Incorporation of Noncanonical Amino Acids in Synthetic Biology.	Niu W, Guo J.	Chem Rev	10.1021/acs.chemrev.3c00938	2024
Metabolism	The competitive success of Methanomicrococcus blatticola, a dominant methylotrophic methanogen in the cockroach hindgut, is supported by high substrate affinities and favorable thermodynamics.	Sprenger WW, Hackstein JH, Keltjens JT.	FEMS Microbiol Ecol	10.1111/j.1574-6941.2007.00287.x	2007
Metabolism	A functional approach to uncover the low-temperature adaptation strategies of the archaeon Methanosarcina barkeri.	Gunnigle E, McCay P, Fuszard M, Botting CH, Abram F, O'Flaherty V.	Appl Environ Microbiol	10.1128/aem.03787-12	2013
Metabolism	Overcoming Near-Cognate Suppression in a Release Factor 1-Deficient Host with an Improved Nitro-Tyrosine tRNA Synthetase.	Beyer JN, Hosseinzadeh P, Gottfried-Lee I, Van Fossen EM, Zhu P, Bednar RM, Karplus PA, Mehl RA, Cooley RB.	J Mol Biol	10.1016/j.jmb.2020.06.014	2020
Metabolism	Hydrogenotrophic Methanogenesis and Autotrophic Growth of Methanosarcina thermophila.	Lackner N, Hintersonnleitner A, Wagner AO, Illmer P.	Archaea	10.1155/2018/4712608	2018
Enzymology	The membrane-bound [NiFe]-hydrogenase (Ech) from Methanosarcina barkeri: unusual properties of the iron-sulphur clusters.	Kurkin S, Meuer J, Koch J, Hedderich R, Albracht SP.	Eur J Biochem	10.1046/j.1432-1033.2002.03328.x	2002
	Transposase interaction with the beta sliding clamp: effects on insertion sequence proliferation and transposition rate.	Diaz-Maldonado H, Gomez MJ, Moreno-Paz M, San Martin-Uriz P, Amils R, Parro V, Lopez de Saro FJ.	Sci Rep	10.1038/srep13329	2015
	In vivo contextual requirements for UAG translation as pyrrolysine.	Longstaff DG, Blight SK, Zhang L, Green-Church KB, Krzycki JA.	Mol Microbiol	10.1111/j.1365-2958.2006.05500.x	2007
Phylogeny	Isolation, Physiological Characterization, and Antibiotic Susceptibility Testing of Fast-Growing Bacteria from the Sea-Affected Temporary Meltwater Ponds in the Thala Hills Oasis (Enderby Land, East Antarctica).	Akulava V, Miamin U, Akhremchuk K, Valentovich L, Dolgikh A, Shapaval V.	Biology (Basel)	10.3390/biology11081143	2022
	Biochemical Properties of Black and Green Teas and Their Insoluble Residues as Natural Dietary Additives to Optimize In Vitro Rumen Degradability and Fermentation but Reduce Methane in Sheep.	Ramdani D, Jayanegara A, Chaudhry AS.	Animals (Basel)	10.3390/ani12030305	2022
	Incorporation of Nonproteinogenic Amino Acids in Class I and II Lantibiotics.	Kakkar N, Perez JG, Liu WR, Jewett MC, van der Donk WA.	ACS Chem Biol	10.1021/acschembio.7b01024	2018
Proteome	Site-Specific Protein Labeling with Fluorophores as a Tool To Monitor Protein Turnover.	Mideksa YG, Fottner M, Braus S, Weiss CAM, Nguyen TA, Meier S, Lang K, Feige MJ.	Chembiochem	10.1002/cbic.201900651	2020
	Progress Toward a Semi-Synthetic Organism with an Unrestricted Expanded Genetic Alphabet.	Dien VT, Holcomb M, Feldman AW, Fischer EC, Dwyer TJ, Romesberg FE.	J Am Chem Soc	10.1021/jacs.8b08416	2018
	Incorporation of Amino Acids with Long-Chain Terminal Olefins into Proteins.	Exner MP, Kohling S, Rivollier J, Gosling S, Srivastava P, Palyancheva ZI, Herdewijn P, Heck MP, Rademann J, Budisa N.	Molecules	10.3390/molecules21030287	2016
	Recent Progress in Designing Nanomaterial Biohybrids for Artificial Photosynthesis.	Jeevanandham S, Ramasundaram S, Vijay N, Oh TH, Selvan ST.	Nanomaterials (Basel)	10.3390/nano15100730	2025
Metabolism	Development and assessment of whole-genome oligonucleotide microarrays to analyze an anaerobic microbial community and its responses to oxidative stress.	Scholten JC, Culley DE, Nie L, Munn KJ, Chow L, Brockman FJ, Zhang W.	Biochem Biophys Res Commun	10.1016/j.bbrc.2007.04.160	2007
Genetics	Diversity and Metabolic Potential of the Terrestrial Mud Volcano Microbial Community with a High Abundance of Archaea Mediating the Anaerobic Oxidation of Methane.	Merkel AY, Chernyh NA, Pimenov NV, Bonch-Osmolovskaya EA, Slobodkin AI.	Life (Basel)	10.3390/life11090953	2021
Enzymology	Model-based driving mechanism analysis for butyric acid production in Clostridium tyrobutyricum.	Feng J, Guo X, Cai F, Fu H, Wang J.	Biotechnol Biofuels Bioprod	10.1186/s13068-022-02169-z	2022
Metabolism	Translational accuracy of a tethered ribosome.	Fabret C, Namy O.	Nucleic Acids Res	10.1093/nar/gkab259	2021
	Characterization of biochars derived from different materials and their effects on microbial dechlorination of pentachlorophenol in a consortium.	Zhang C, Zhang N, Xiao Z, Li Z, Zhang D.	RSC Adv	10.1039/c8ra09410a	2019
Metabolism	A short ORF-encoded transcriptional regulator.	Koh M, Ahmad I, Ko Y, Zhang Y, Martinez TF, Diedrich JK, Chu Q, Moresco JJ, Erb MA, Saghatelian A, Schultz PG, Bollong MJ.	Proc Natl Acad Sci U S A	10.1073/pnas.2021943118	2021
	Advances and Applications of Clostridium Co-culture Systems in Biotechnology.	Du Y, Zou W, Zhang K, Ye G, Yang J, Yang J.	Front Microbiol	10.3389/fmicb.2020.560223	2020
Metabolism	Rapid Identification of Functional Pyrrolysyl-tRNA Synthetases via Fluorescence-Activated Cell Sorting.	Lin AE, Lin Q.	Int J Mol Sci	10.3390/ijms20010029	2018
Biotechnology	Dual stop codon suppression in mammalian cells with genomically integrated genetic code expansion machinery.	Meineke B, Heimgartner J, Caridha R, Block MF, Kimler KJ, Pires MF, Landreh M, Elsasser SJ.	Cell Rep Methods	10.1016/j.crmeth.2023.100626	2023
Enzymology	Class I and class II lysyl-tRNA synthetase mutants and the genetic encoding of pyrrolysine in Methanosarcina spp.	Mahapatra A, Srinivasan G, Richter KB, Meyer A, Lienard T, Zhang JK, Zhao G, Kang PT, Chan M, Gottschalk G, Metcalf WW, Krzycki JA.	Mol Microbiol	10.1111/j.1365-2958.2007.05740.x	2007
	Influence of sulfide on diazotrophic growth of the methanogen Methanococcus maripaludis and its implications for the origin of nitrogenase.	Payne D, Spietz RL, Newell DL, Dijkstra P, Boyd ES.	Commun Biol	10.1038/s42003-023-05163-9	2023
	Enhanced sensitivity of DNA- and rRNA-based stable isotope probing by fractionation and quantitative analysis of isopycnic centrifugation gradients.	Lueders T, Manefield M, Friedrich MW.	Environ Microbiol	10.1046/j.1462-2920.2003.00536.x	2004
	Evolving understanding of rumen methanogen ecophysiology.	Khairunisa BH, Heryakusuma C, Ike K, Mukhopadhyay B, Susanti D.	Front Microbiol	10.3389/fmicb.2023.1296008	2023
Pathogenicity	Antimicrobial activity of different proteins and their fragments from Bacillus thuringiensis parasporal crystals against clostridia and archaea.	Yudina TG, Brioukhanov AL, Zalunin IA, Revina LP, Shestakov AI, Voyushina NE, Chestukhina GG, Netrusov AI.	Anaerobe	10.1016/j.anaerobe.2006.09.006	2007
Enzymology	Genetic code: introducing pyrrolysine.	Ibba M, Soll D.	Curr Biol	10.1016/s0960-9822(02)00947-8	2002
	Rat microbial biogeography and age-dependent lactic acid bacteria in healthy lungs.	Zhao L, Cunningham CM, Andruska AM, Schimmel K, Ali MK, Kim D, Gu S, Chang JL, Spiekerkoetter E, Nicolls MR.	Lab Anim (NY)	10.1038/s41684-023-01322-x	2024
Metabolism	Physiological and molecular characterizations of the interactions in two cellulose-to-methane cocultures.	Lu H, Ng SK, Jia Y, Cai M, Lee PKH.	Biotechnol Biofuels	10.1186/s13068-017-0719-y	2017
	Influence of the addition of sulphate and ferric ions in a methanogenic anaerobic packed-bed reactor treating gasoline-contaminated water.	Fernandes BS, Chinalia FA, Sarti A, Silva AJ, Foresti E, Zaiat M.	Water Sci Technol	10.2166/wst.2006.496	2006
	Complete genome sequence of Methanospirillum hungatei type strain JF1.	Gunsalus RP, Cook LE, Crable B, Rohlin L, McDonald E, Mouttaki H, Sieber JR, Poweleit N, Zhou H, Lapidus AL, Daligault HE, Land M, Gilna P, Ivanova N, Kyrpides N, Culley DE, McInerney MJ.	Stand Genomic Sci	10.1186/s40793-015-0124-8	2016
	Activation of the pyrrolysine suppressor tRNA requires formation of a ternary complex with class I and class II lysyl-tRNA synthetases.	Polycarpo C, Ambrogelly A, Ruan B, Tumbula-Hansen D, Ataide SF, Ishitani R, Yokoyama S, Nureki O, Ibba M, Soll D.	Mol Cell	10.1016/s1097-2765(03)00280-6	2003
Enzymology	A new UAG-encoded residue in the structure of a methanogen methyltransferase.	Hao B, Gong W, Ferguson TK, James CM, Krzycki JA, Chan MK.	Science	10.1126/science.1069556	2002
Enzymology	The role of zinc in the methylation of the coenzyme M thiol group in methanol:coenzyme M methyltransferase from Methanosarcina barkeri.	Kruer M, Haumann M, Meyer-Klaucke W, Thauer RK, Dau H.	Eur J Biochem	10.1046/j.1432-1033.2002.02860.x	2002
Metabolism	Aminoacylation of tRNA 2'- or 3'-hydroxyl by phosphoseryl- and pyrrolysyl-tRNA synthetases.	Englert M, Moses S, Hohn M, Ling J, O'Donoghue P, Soll D.	FEBS Lett	10.1016/j.febslet.2013.08.037	2013
Genetics	Catabolic Machinery of the Human Gut Microbes Bestow Resilience Against Vanillin Antimicrobial Nature.	Yadav M, Pandey R, Chauhan NS.	Front Microbiol	10.3389/fmicb.2020.588545	2020
Metabolism	An Evolved Methanomethylophilus alvus Pyrrolysyl-tRNA Synthetase/tRNA Pair Is Highly Active and Orthogonal in Mammalian Cells.	Beranek V, Willis JCW, Chin JW.	Biochemistry	10.1021/acs.biochem.8b00808	2019
Metabolism	Microbial growth by a net heat up-take: a calorimetric and thermodynamic study on acetotrophic methanogenesis by Methanosarcina barkeri.	Liu JS, Marison IW, von Stockar U.	Biotechnol Bioeng	10.1002/bit.1176	2001
	Phylogenetic and Structural Comparisons of the Three Types of Methyl Coenzyme M Reductase from Methanococcales and Methanobacteriales.	Wagner T, Wegner CE, Kahnt J, Ermler U, Shima S.	J Bacteriol	10.1128/jb.00197-17	2017
	Effect of Nickel and Cobalt on Methanogenic Enrichment Cultures and Role of Biogenic Sulfide in Metal Toxicity Attenuation.	Paulo LM, Ramiro-Garcia J, van Mourik S, Stams AJM, Sousa DZ.	Front Microbiol	10.3389/fmicb.2017.01341	2017
	Amber-codon suppression for spatial localization and in vivo photoaffinity capture of the interactome of the Pseudomonas aeruginosa rare lipoprotein A lytic transglycosylase.	Avila-Cobian LF, Hoshino H, Horsman ME, Nguyen VT, Qian Y, Feltzer R, Kim C, Hu DD, Champion MM, Fisher JF, Mobashery S.	Protein Sci	10.1002/pro.4781	2023
Metabolism	Genetic Incorporation of Noncanonical Amino Acids Using Two Mutually Orthogonal Quadruplet Codons.	Hankore ED, Zhang L, Chen Y, Liu K, Niu W, Guo J.	ACS Synth Biol	10.1021/acssynbio.9b00051	2019
Phylogeny	Isolation and characterization of new Methanosarcina mazei strains KOR-3, -4, -5, and -6 from an anaerobic digester using pig slurry.	Battumur U, Yoon Y, Bae GS, Kim CH.	Asian-Australas J Anim Sci	10.5713/ajas.16.0830	2017
Metabolism	Acetogens and acetoclastic methanosarcinales govern methane formation in abandoned coal mines.	Beckmann S, Lueders T, Kruger M, von Netzer F, Engelen B, Cypionka H.	Appl Environ Microbiol	10.1128/aem.02818-10	2011
	Biological treatment of biowaste as an innovative source of CO-The role of composting process.	Sobieraj K, Stegenta-Dabrowska S, Luo G, Koziel JA, Bialowiec A.	Front Bioeng Biotechnol	10.3389/fbioe.2023.1126737	2023
Metabolism	Methanogenesis from furfural by defined mixed cultures.	Boopathy R.	Curr Microbiol	10.1007/s00284-001-0010-z	2002
Enzymology	Structure of the membrane-bound formate hydrogenlyase complex from Escherichia coli.	Steinhilper R, Hoff G, Heider J, Murphy BJ.	Nat Commun	10.1038/s41467-022-32831-x	2022
	Organic Semiconducting Polymers for Augmenting Biosynthesis and Bioconversion.	Chen W, Lin H, Yu W, Huang Y, Lv F, Bai H, Wang S.	JACS Au	10.1021/jacsau.3c00576	2024
Metabolism	F420H2 Is Required for Phthiocerol Dimycocerosate Synthesis in Mycobacteria.	Purwantini E, Daniels L, Mukhopadhyay B.	J Bacteriol	10.1128/jb.01035-15	2016
Phylogeny	PCR-based DGGE fingerprinting and identification of methanogens detected in three different types of UASB granules.	Keyser M, Witthuhn RC, Lamprecht C, Coetzee MP, Britz TJ.	Syst Appl Microbiol	10.1016/j.syapm.2005.06.003	2006
Metabolism	Hydrogen concentrations in methane-forming cells probed by the ratios of reduced and oxidized coenzyme F420.	de Poorter LMI, Geerts WJ, Keltjens JT.	Microbiology (Reading)	10.1099/mic.0.27679-0	2005
Metabolism	It does not always take two to tango: "Syntrophy" via hydrogen cycling in one bacterial cell.	Wiechmann A, Ciurus S, Oswald F, Seiler VN, Muller V.	ISME J	10.1038/s41396-020-0627-1	2020
	Two-Tier Screening Platform for Directed Evolution of Aminoacyl-tRNA Synthetases with Enhanced Stop Codon Suppression Efficiency.	Owens AE, Grasso KT, Ziegler CA, Fasan R.	Chembiochem	10.1002/cbic.201700039	2017
	Metabolomics Comparison of Hanwoo (Bos taurus coreanae) Biofluids Using Proton Nuclear Magnetic Resonance Spectroscopy.	Eom JS, Lee SJ, Kim HS, Choi YY, Kim SH, Lee YG, Lee SS.	Metabolites	10.3390/metabo10080333	2020
	Pyrrolysine encoded by UAG in Archaea: charging of a UAG-decoding specialized tRNA.	Srinivasan G, James CM, Krzycki JA.	Science	10.1126/science.1069588	2002
Metabolism	Response of Methanogen Communities to the Elevation of Cathode Potentials in Bioelectrochemical Reactors Amended with Magnetite.	Gao K, Wang X, Huang J, Xia X, Lu Y.	Appl Environ Microbiol	10.1128/aem.01488-21	2021
	Zinc-thiolate intermediate in catalysis of methyl group transfer in Methanosarcina barkeri.	Gencic S, LeClerc GM, Gorlatova N, Peariso K, Penner-Hahn JE, Grahame DA.	Biochemistry	10.1021/bi0112917	2001
	The streptothricin acetyltransferase (sat) gene as a positive selectable marker for methanogenic archaea.	Farley KR, Metcalf WW.	FEMS Microbiol Lett	10.1093/femsle/fnz216	2019
Genetics	Soil Properties Interacting With Microbial Metagenome in Decreasing CH₄ Emission From Seasonally Flooded Marshland Following Different Stages of Afforestation.	Zhang Q, Tang J, Angel R, Wang D, Hu X, Gao S, Zhang L, Tang Y, Zhang X, Koide RT, Yang H, Sun Q.	Front Microbiol	10.3389/fmicb.2022.830019	2022
	Bacteria employ lysine acetylation of transcriptional regulators to adapt gene expression to cellular metabolism.	Kremer M, Schulze S, Eisenbruch N, Nagel F, Vogt R, Berndt L, Dorre B, Palm GJ, Hoppen J, Girbardt B, Albrecht D, Sievers S, Delcea M, Baumann U, Schnetz K, Lammers M.	Nat Commun	10.1038/s41467-024-46039-8	2024
Enzymology	Protection of Methanosarcina barkeri against oxidative stress: identification and characterization of an iron superoxide dismutase.	Brioukhanov A, Netrusov A, Sordel M, Thauer RK, Shima S.	Arch Microbiol	10.1007/s002030000180	2000
	Thermophilic Biogas Upgrading via ex Situ Addition of H₂ and CO₂ Using Codigested Feedstocks of Cow Manure and the Organic Fraction of Solid Municipal Waste.	Sekoai PT, Engelbrecht N, du Preez SP, Bessarabov D.	ACS Omega	10.1021/acsomega.0c01725	2020
Metabolism	Enhancement of methanogenesis by electric syntrophy with biogenic iron-sulfide minerals.	Kato S, Igarashi K.	Microbiologyopen	10.1002/mbo3.647	2019
Phylogeny	In-Silico Detection of Oral Prokaryotic Species With Highly Similar 16S rRNA Sequence Segments Using Different Primer Pairs.	Regueira-Iglesias A, Vazquez-Gonzalez L, Balsa-Castro C, Blanco-Pintos T, Martin-Biedma B, Arce VM, Carreira MJ, Tomas I.	Front Cell Infect Microbiol	10.3389/fcimb.2021.770668	2021
Enzymology	The amber codon in the gene encoding the monomethylamine methyltransferase isolated from Methanosarcina barkeri is translated as a sense codon.	James CM, Ferguson TK, Leykam JF, Krzycki JA.	J Biol Chem	10.1074/jbc.m102929200	2001
Metabolism	Heme biosynthesis in Methanosarcina barkeri via a pathway involving two methylation reactions.	Buchenau B, Kahnt J, Heinemann IU, Jahn D, Thauer RK.	J Bacteriol	10.1128/jb.01349-06	2006
Metabolism	Reconstitution of dimethylamine:coenzyme M methyl transfer with a discrete corrinoid protein and two methyltransferases purified from Methanosarcina barkeri.	Ferguson DJ, Gorlatova N, Grahame DA, Krzycki JA.	J Biol Chem	10.1074/jbc.m910218199	2000
	Co-occurrence of Methanosarcina mazei and Geobacteraceae in an iron (III)-reducing enrichment culture.	Zheng S, Zhang H, Li Y, Zhang H, Wang O, Zhang J, Liu F.	Front Microbiol	10.3389/fmicb.2015.00941	2015
Metabolism	Expression of acetylcholine (ACh) and ACh-synthesizing activity in Archaea.	Yamada T, Fujii T, Kanai T, Amo T, Imanaka T, Nishimasu H, Wakagi T, Shoun H, Kamekura M, Kamagata Y, Kato T, Kawashima K.	Life Sci	10.1016/j.lfs.2005.01.026	2005
Genetics	Unraveling the phylogenomic diversity of Methanomassiliicoccales and implications for mitigating ruminant methane emissions.	Xie F, Zhao S, Zhan X, Zhou Y, Li Y, Zhu W, Pope PB, Attwood GT, Jin W, Mao S.	Genome Biol	10.1186/s13059-024-03167-0	2024
Enzymology	Complementary Microorganisms in Highly Corrosive Biofilms from an Offshore Oil Production Facility.	Vigneron A, Alsop EB, Chambers B, Lomans BP, Head IM, Tsesmetzis N.	Appl Environ Microbiol	10.1128/aem.03842-15	2016
Metabolism	Anaerobic bioconversion of cellulose by Ruminococcus albus, Methanobrevibacter smithii, and Methanosarcina barkeri.	Miller TL, Currenti E, Wolin MJ.	Appl Microbiol Biotechnol	10.1007/s002530000430	2000
	A Combinatorial Algorithm for Microbial Consortia Synthetic Design.	Julien-Laferriere A, Bulteau L, Parrot D, Marchetti-Spaccamela A, Stougie L, Vinga S, Mary A, Sagot MF.	Sci Rep	10.1038/srep29182	2016
Metabolism	The MtsA subunit of the methylthiol:coenzyme M methyltransferase of Methanosarcina barkeri catalyses both half-reactions of corrinoid-dependent dimethylsulfide: coenzyme M methyl transfer.	Tallant TC, Paul L, Krzycki JA.	J Biol Chem	10.1074/jbc.m007514200	2001
Metabolism	Differentiated stimulating effects of activated carbon on methanogenic degradation of acetate, propionate and butyrate.	Xu S, Han R, Zhang Y, He C, Liu H.	Waste Manag	10.1016/j.wasman.2018.03.037	2018
	Methanogenic response to long-term permafrost thaw is determined by paleoenvironment.	Holm S, Walz J, Horn F, Yang S, Grigoriev MN, Wagner D, Knoblauch C, Liebner S.	FEMS Microbiol Ecol	10.1093/femsec/fiaa021	2020
	Genetically Encoded Quinone Methides Enabling Rapid, Site-Specific, and Photocontrolled Protein Modification with Amine Reagents.	Liu J, Cheng R, Van Eps N, Wang N, Morizumi T, Ou WL, Klauser PC, Rozovsky S, Ernst OP, Wang L.	J Am Chem Soc	10.1021/jacs.0c06820	2020
	Efficient Unnatural Protein Production by Pyrrolysyl-tRNA Synthetase With Genetically Fused Solubility Tags.	Koch NG, Baumann T, Budisa N.	Front Bioeng Biotechnol	10.3389/fbioe.2021.807438	2021
	The auxiliary [4Fe-4S] cluster of the Radical SAM heme synthase from Methanosarcina barkeri is involved in electron transfer.	Kuhner M, Schweyen P, Hoffmann M, Ramos JV, Reijerse EJ, Lubitz W, Broring M, Layer G.	Chem Sci	10.1039/c6sc01140c	2016
Metabolism	Refined experimental annotation reveals conserved corrinoid autotrophy in chloroform-respiring Dehalobacter isolates.	Wang PH, Tang S, Nemr K, Flick R, Yan J, Mahadevan R, Yakunin AF, Loffler FE, Edwards EA.	ISME J	10.1038/ismej.2016.158	2017
	Combined Stochastic and Deterministic Processes Drive Community Assembly of Anaerobic Microbiomes During Granule Flotation.	Trego AC, McAteer PG, Nzeteu C, Mahony T, Abram F, Ijaz UZ, O'Flaherty V.	Front Microbiol	10.3389/fmicb.2021.666584	2021
Metabolism	Genetic analysis of mch mutants in two Methanosarcina species demonstrates multiple roles for the methanopterin-dependent C-1 oxidation/reduction pathway and differences in H(2) metabolism between closely related species.	Guss AM, Mukhopadhyay B, Zhang JK, Metcalf WW.	Mol Microbiol	10.1111/j.1365-2958.2005.04514.x	2005
Enzymology	Activation and reaction kinetics of the dimethylamine/coenzyme M methyltransfer in Methanosarcina barkeri strain Fusaro.	Wassenaar RW, Keltjens JT, van der Drift C.	Eur J Biochem	10.1046/j.1432-1327.1998.2580597.x	1998
Metabolism	Hydrogen production by methanogens under low-hydrogen conditions.	Valentine DL, Blanton DC, Reeburgh WS.	Arch Microbiol	10.1007/s002030000224	2000
Enzymology	Investigation of serine hydroxymethyltransferase in methanogens.	Lin Z, Sparling R.	Can J Microbiol	10.1139/cjm-44-7-652	1998
Phylogeny	Molecular identification of methanogenic archaea from surti buffaloes (bubalus bubalis), reveals more hydrogenotrophic methanogens phylotypes.	Singh KM, Pandya PR, Parnerkar S, Tripathi AK, Rank DN, Kothari RK, Joshi CG.	Braz J Microbiol	10.1590/s1517-83822011000100017	2011
Metabolism	A multisubunit membrane-bound [NiFe] hydrogenase and an NADH-dependent Fe-only hydrogenase in the fermenting bacterium Thermoanaerobacter tengcongensis.	Soboh B, Linder D, Hedderich R.	Microbiology (Reading)	10.1099/mic.0.27159-0	2004
	Probing unnatural amino acid integration into enhanced green fluorescent protein by genetic code expansion with a high-throughput screening platform.	Wandrey G, Wurzel J, Hoffmann K, Ladner T, Buchs J, Meinel L, Luhmann T.	J Biol Eng	10.1186/s13036-016-0031-6	2016
Enzymology	Purification, characterization, and primary structure of a monofunctional catalase from Methanosarcina barkeri.	Shima S, Netrusov A, Sordel M, Wicke M, Hartmann GC, Thauer RK.	Arch Microbiol	10.1007/s002030050716	1999
Phylogeny	Acetoclastic Methanosaeta are dominant methanogens in organic-rich Antarctic marine sediments.	Carr SA, Schubotz F, Dunbar RB, Mills CT, Dias R, Summons RE, Mandernack KW.	ISME J	10.1038/ismej.2017.150	2018
Pathogenicity	Effect of octamethylcyclotetrasiloxane on methylation of bismuth by Methanosarcina barkeri.	Michalke K, Meyer J, Hensel R.	Appl Environ Microbiol	10.1128/aem.00694-06	2006
Genetics	IMGMD: A platform for the integration and standardisation of In silico Microbial Genome-scale Metabolic Models.	Ye C, Xu N, Dong C, Ye Y, Zou X, Chen X, Guo F, Liu L.	Sci Rep	10.1038/s41598-017-00820-6	2017
	Improved production of the non-native cofactor F₄₂₀ in Escherichia coli.	Shah MV, Nazem-Bokaee H, Antoney J, Kang SW, Jackson CJ, Scott C.	Sci Rep	10.1038/s41598-021-01224-3	2021
	Investigating the biological potential of galactic cosmic ray-induced radiation-driven chemical disequilibrium in the Martian subsurface environment.	Atri D.	Sci Rep	10.1038/s41598-020-68715-7	2020
	A bio-orthogonal linear ubiquitin probe identifies STAT3 as a direct substrate of OTULIN in glioblastoma.	Du X, Pang J, Gu B, Si T, Chang Y, Li T, Wu M, Wang Z, Wang Y, Feng J, Wu N, Man J, Li H, Li A, Zhang T, Wang B, Duan X.	Nucleic Acids Res	10.1093/nar/gkad002	2023
Metabolism	An alternative resource allocation strategy in the chemolithoautotrophic archaeon Methanococcus maripaludis.	Muller AL, Gu W, Patsalo V, Deutzmann JS, Williamson JR, Spormann AM.	Proc Natl Acad Sci U S A	10.1073/pnas.2025854118	2021
	Methane Production by Facultative Anaerobic Wood-Rot Fungi via a New Halomethane-Dependent Pathway.	Huang X, Liu X, Xue Y, Pan B, Xiao L, Wang S, Lever MA, Hinrichs KU, Inagaki F, Liu C.	Microbiol Spectr	10.1128/spectrum.01700-22	2022
Enzymology	Methanol:coenzyme M methyltransferase from Methanosarcina barkeri -- substitution of the corrinoid harbouring subunit MtaC by free cob(I)alamin.	Sauer K, Thauer RK.	Eur J Biochem	10.1046/j.1432-1327.1999.00355.x	1999
Metabolism	An Antarctic Extreme Halophile and Its Polyextremophilic Enzyme: Effects of Perchlorate Salts.	Laye VJ, DasSarma S.	Astrobiology	10.1089/ast.2017.1766	2018
Metabolism	Microbial dynamics during azo dye degradation in a UASB reactor supplied with yeast extract.	Silva SQ, Silva DC, Lanna MC, Baeta BE, Aquino SF.	Braz J Microbiol	10.1590/s1517-83822014000400005	2014
Enzymology	A paramagnetic species with unique EPR characteristics in the active site of heterodisulfide reductase from methanogenic archaea.	Madadi-Kahkesh S, Duin EC, Heim S, Albracht SP, Johnson MK, Hedderich R.	Eur J Biochem	10.1046/j.1432-1327.2001.02141.x	2001
Metabolism	Enrichment of syngas-converting communities from a multi-orifice baffled bioreactor.	Arantes AL, Alves JI, Stams AJM, Alves MM, Sousa DZ.	Microb Biotechnol	10.1111/1751-7915.12864	2018
Metabolism	Purification and catalytic properties of Ech hydrogenase from Methanosarcina barkeri.	Meuer J, Bartoschek S, Koch J, Kunkel A, Hedderich R.	Eur J Biochem	10.1046/j.1432-1327.1999.00738.x	1999
	Preliminary structural studies on the MtxX protein from Methanococcus jannaschii.	Shin DH.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309108007033	2008
	Two F420-reducing hydrogenases in methanosarcina barkeri	Vaupel M, Thauer RK.	Arch Microbiol	10.1007/s002030050561	1998
Enzymology	A novel membrane-bound Ech [NiFe] hydrogenase in Desulfovibrio gigas.	Rodrigues R, Valente FM, Pereira IA, Oliveira S, Rodrigues-Pousada C.	Biochem Biophys Res Commun	10.1016/s0006-291x(03)00975-6	2003
Enzymology	Purification and characterization of dimethylamine:5-hydroxybenzimidazolyl-cobamide methyltransferase from Methanosarcina barkeri Fusaro.	Wassenaar RW, Keltjens JT, van der Drift C, Vogels GD.	Eur J Biochem	10.1046/j.1432-1327.1998.2530692.x	1998
Metabolism	Methyl fluoride affects methanogenesis rather than community composition of methanogenic archaea in a rice field soil.	Daebeler A, Gansen M, Frenzel P.	PLoS One	10.1371/journal.pone.0053656	2013
Enzymology	Methyl-coenzyme M formation in methanogenic archaea. Involvement of zinc in coenzyme M activation.	Sauer K, Thauer RK.	Eur J Biochem	10.1046/j.1432-1327.2000.01245.x	2000
Enzymology	Kinetic modeling of Stickland reactions-coupled methanogenesis for a methanogenic culture.	Sangavai C, Bharathi M, Ganesh SP, Chellapandi P.	AMB Express	10.1186/s13568-019-0803-8	2019
	Enhancing methane production from food waste fermentate using biochar: the added value of electrochemical testing in pre-selecting the most effective type of biochar.	Cruz Viggi C, Simonetti S, Palma E, Pagliaccia P, Braguglia C, Fazi S, Baronti S, Navarra MA, Pettiti I, Koch C, Harnisch F, Aulenta F.	Biotechnol Biofuels	10.1186/s13068-017-0994-7	2017
Metabolism	Coenzyme M binds to a [4Fe-4S] cluster in the active site of heterodisulfide reductase as deduced from EPR studies with the [33S]coenzyme M-treated enzyme.	Duin EC, Bauer C, Jaun B, Hedderich R.	FEBS Lett	10.1016/s0014-5793(03)00134-0	2003
Enzymology	A story of chelatase evolution: identification and characterization of a small 13-15-kDa "ancestral" cobaltochelatase (CbiXS) in the archaea.	Brindley AA, Raux E, Leech HK, Schubert HL, Warren MJ.	J Biol Chem	10.1074/jbc.m302468200	2003
Phylogeny	Systematic classification of the His-Me finger superfamily.	Jablonska J, Matelska D, Steczkiewicz K, Ginalski K.	Nucleic Acids Res	10.1093/nar/gkx924	2017
	Effect of Sub-Stoichiometric Fe(III) Amounts on LCFA Degradation by Methanogenic Communities.	Cavaleiro AJ, Guedes AP, Silva SA, Arantes AL, Sequeira JC, Salvador AF, Sousa DZ, Stams AJM, Alves MM.	Microorganisms	10.3390/microorganisms8091375	2020
Enzymology	Comparison of three methyl-coenzyme M reductases from phylogenetically distant organisms: unusual amino acid modification, conservation and adaptation.	Grabarse W, Mahlert F, Shima S, Thauer RK, Ermler U.	J Mol Biol	10.1006/jmbi.2000.4136	2000
Enzymology	A purified energy-converting hydrogenase from Thermoanaerobacter kivui demonstrates coupled H⁺-translocation and reduction in vitro.	Katsyv A, Muller V.	J Biol Chem	10.1016/j.jbc.2022.102216	2022
Pathogenicity	Assessment of the oxidant tolerance of Methanosarcina acetivorans.	Horne AJ, Lessner DJ.	FEMS Microbiol Lett	10.1111/1574-6968.12115	2013
Metabolism	Methanol:coenzyme M methyltransferase from Methanosarcina barkeri--identification of the active-site histidine in the corrinoid-harboring subunit MtaC by site-directed mutagenesis.	Sauer K, Thauer RK.	Eur J Biochem	10.1046/j.1432-1327.1998.2530698.x	1998
	Cysteinyl-tRNA formation: the last puzzle of aminoacyl-tRNA synthesis.	Li T, Graham DE, Stathopoulos C, Haney PJ, Kim HS, Vothknecht U, Kitabatake M, Hong KW, Eggertsson G, Curnow AW, Lin W, Celic I, Whitman W, Soll D.	FEBS Lett	10.1016/s0014-5793(99)01550-1	1999
Metabolism	Methanol:coenzyme M methyltransferase from Methanosarcina barkeri. Zinc dependence and thermodynamics of the methanol:cob(I)alamin methyltransferase reaction.	Sauer K, Thauer RK.	Eur J Biochem	10.1111/j.1432-1033.1997.t01-1-00280.x	1997
	Exploiting Biological Nitrogen Fixation: A Route Towards a Sustainable Agriculture.	Soumare A, Diedhiou AG, Thuita M, Hafidi M, Ouhdouch Y, Gopalakrishnan S, Kouisni L.	Plants (Basel)	10.3390/plants9081011	2020
Enzymology	Purification and characterization of recombinant malate synthase enzymes from Streptomyces coelicolor A3(2) and S. clavuligerus NRRL3585.	Loke P, Goh LL, Seng Soh B, Yeow P, Sim TS.	J Ind Microbiol Biotechnol	10.1038/sj/jim/7000240	2002
Metabolism	Exploring Hydrogenotrophic Methanogenesis: a Genome Scale Metabolic Reconstruction of Methanococcus maripaludis.	Richards MA, Lie TJ, Zhang J, Ragsdale SW, Leigh JA, Price ND.	J Bacteriol	10.1128/jb.00571-16	2016
	Iron and sulfate reduction structure microbial communities in (sub-)Antarctic sediments.	Wunder LC, Aromokeye DA, Yin X, Richter-Heitmann T, Willis-Poratti G, Schnakenberg A, Otersen C, Dohrmann I, Romer M, Bohrmann G, Kasten S, Friedrich MW.	ISME J	10.1038/s41396-021-01014-9	2021
Enzymology	The iron-sulfur centers of the pyruvate:ferredoxin oxidoreductase from Methanosarcina barkeri (Fusaro).	Bock AK, Schonheit P, Teixeira M.	FEBS Lett	10.1016/s0014-5793(97)00998-8	1997
Metabolism	Energy conservation by a hydrogenase-dependent chemiosmotic mechanism in an ancient metabolic pathway.	Schoelmerich MC, Muller V.	Proc Natl Acad Sci U S A	10.1073/pnas.1818580116	2019
Metabolism	N-carboxymethanofuran (carbamate) formation from methanofuran and CO2 in methanogenic archaea. Thermodynamics and kinetics of the spontaneous reaction.	Bartoschek S, Vorholt JA, Thauer RK, Geierstanger BH, Griesinger C.	Eur J Biochem	10.1046/j.1432-1327.2000.01331.x	2000
	Biochar Facilitated Direct Interspecies Electron Transfer in Anaerobic Digestion to Alleviate Antibiotics Inhibition and Enhance Methanogenesis: A Review.	Zhang K, Deng Y, Liu Z, Feng Y, Hu C, Wang Z.	Int J Environ Res Public Health	10.3390/ijerph20032296	2023
Enzymology	Differences in hydrogenase gene expression between Methanosarcina acetivorans and Methanosarcina barkeri.	Guss AM, Kulkarni G, Metcalf WW.	J Bacteriol	10.1128/jb.00563-08	2009
	LigD: A Structural Guide to the Multi-Tool of Bacterial Non-Homologous End Joining.	Amare B, Mo A, Khan N, Sowa DJ, Warner MM, Tetenych A, Andres SN.	Front Mol Biosci	10.3389/fmolb.2021.787709	2021
Enzymology	Quantitative amino acid analysis of bovine NADH:ubiquinone oxidoreductase (Complex I) and related enzymes. Consequences for the number of prosthetic groups.	Albracht SP, van der Linden E, Faber BW.	Biochim Biophys Acta	10.1016/s0005-2728(02)00393-6	2003
Metabolism	PylSn and the homologous N-terminal domain of pyrrolysyl-tRNA synthetase bind the tRNA that is essential for the genetic encoding of pyrrolysine.	Jiang R, Krzycki JA.	J Biol Chem	10.1074/jbc.m112.396754	2012
	Protein modification via alkyne hydrosilylation using a substoichiometric amount of ruthenium(ii) catalyst.	Kwan TT, Boutureira O, Frye EC, Walsh SJ, Gupta MK, Wallace S, Wu Y, Zhang F, Sore HF, Galloway WRJD, Chin JW, Welch M, Bernardes GJL, Spring DR.	Chem Sci	10.1039/c6sc05313k	2017
	Effect of dilution rate on structure of a mesophilic acetate-degrading methanogenic community during continuous cultivation.	Shigematsu T, Tang Y, Kawaguchi H, Ninomiya K, Kijima J, Kobayashi T, Morimura S, Kida K.	J Biosci Bioeng	10.1016/s1389-1723(04)70148-6	2003
Enzymology	Methanol:coenzyme M methyltransferase from Methanosarcina barkeri. Purification, properties and encoding genes of the corrinoid protein MT1.	Sauer K, Harms U, Thauer RK.	Eur J Biochem	10.1111/j.1432-1033.1997.t01-1-00670.x	1997
	Systematic Analysis of Escherichia coli Isolates from Sheep and Cattle Suggests Adaption to the Rumen Niche.	Pang J, Liu Z, Zhang Q, Lu X, Qi Q.	Appl Environ Microbiol	10.1128/aem.01417-20	2020
	The tRNA discriminator base defines the mutual orthogonality of two distinct pyrrolysyl-tRNA synthetase/tRNAPyl pairs in the same organism.	Zhang H, Gong X, Zhao Q, Mukai T, Vargas-Rodriguez O, Zhang H, Zhang Y, Wassel P, Amikura K, Maupin-Furlow J, Ren Y, Xu X, Wolf YI, Makarova KS, Koonin EV, Shen Y, Soll D, Fu X.	Nucleic Acids Res	10.1093/nar/gkac271	2022
Enzymology	Activation mechanism of methanol:5-hydroxybenzimidazolylcobamide methyltransferase from Methanosarcina barkeri.	Daas PJ, Hagen WR, Keltjens JT, van der Drift C, Vogels GD.	J Biol Chem	10.1074/jbc.271.37.22346	1996
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Metabolism	Structure and function of an unusual flavodoxin from the domain Archaea.	Prakash D, Iyer PR, Suharti S, Walters KA, Santiago-Martinez MG, Golbeck JH, Murakami KS, Ferry JG.	Proc Natl Acad Sci U S A	10.1073/pnas.1908578116	2019
Metabolism	Roco Proteins: GTPases with a Baroque Structure and Mechanism.	Wauters L, Versees W, Kortholt A.	Int J Mol Sci	10.3390/ijms20010147	2019
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Metabolism	Misacylation of pyrrolysine tRNA in vitro and in vivo.	Gundllapalli S, Ambrogelly A, Umehara T, Li D, Polycarpo C, Soll D.	FEBS Lett	10.1016/j.febslet.2008.08.027	2008
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Enzymology	Primary structure and properties of the formyltransferase from the mesophilic Methanosarcina barkeri: comparison with the enzymes from thermophilic and hyperthermophilic methanogens.	Kunow J, Shima S, Vorholt JA, Thauer RK.	Arch Microbiol	10.1007/s002030050303	1996
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Metabolism	Purification and properties of an enzyme involved in the ATP-dependent activation of the methanol:2-mercaptoethanesulfonic acid methyltransferase reaction in Methanosarcina barkeri.	Daas PJ, Wassenaar RW, Willemsen P, Theunissen RJ, Keltjens JT, van der Drift C, Vogels GD.	J Biol Chem	10.1074/jbc.271.37.22339	1996
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Metabolism	TK1211 Encodes an Amino Acid Racemase towards Leucine and Methionine in the Hyperthermophilic Archaeon Thermococcus kodakarensis.	Zheng RC, Lu XF, Tomita H, Hachisuka SI, Zheng YG, Atomi H.	J Bacteriol	10.1128/jb.00617-20	2021
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Enzymology	Mode of action uncovered for the specific reduction of methane emissions from ruminants by the small molecule 3-nitrooxypropanol.	Duin EC, Wagner T, Shima S, Prakash D, Cronin B, Yanez-Ruiz DR, Duval S, Rumbeli R, Stemmler RT, Thauer RK, Kindermann M.	Proc Natl Acad Sci U S A	10.1073/pnas.1600298113	2016
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Metabolism	Reversible and Tunable Photoswitching of Protein Function through Genetic Encoding of Azobenzene Amino Acids in Mammalian Cells.	Luo J, Samanta S, Convertino M, Dokholyan NV, Deiters A.	Chembiochem	10.1002/cbic.201800226	2018
Metabolism	Identification of specific corrinoids reveals corrinoid modification in dechlorinating microbial communities.	Men Y, Seth EC, Yi S, Crofts TS, Allen RH, Taga ME, Alvarez-Cohen L.	Environ Microbiol	10.1111/1462-2920.12500	2015
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Metabolism	Specific roles of methylcobamide:coenzyme M methyltransferase isozymes in metabolism of methanol and methylamines in Methanosarcina barkeri.	Ferguson DJ, Krzycki JA, Grahame DA.	J Biol Chem	10.1074/jbc.271.9.5189	1996
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Enzymology	Idiosyncratic helix-turn-helix motif in Methanosarcina barkeri seryl-tRNA synthetase has a critical architectural role.	Bilokapic S, Ivic N, Godinic-Mikulcic V, Piantanida I, Ban N, Weygand-Durasevic I.	J Biol Chem	10.1074/jbc.m808501200	2009
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Metabolism	Response of the Anaerobic Methanotroph "Candidatus Methanoperedens nitroreducens" to Oxygen Stress.	Guerrero-Cruz S, Cremers G, van Alen TA, Op den Camp HJM, Jetten MSM, Rasigraf O, Vaksmaa A.	Appl Environ Microbiol	10.1128/aem.01832-18	2018
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Genetics	A Comprehensive Analysis of cis-Acting RNA Elements in the SARS-CoV-2 Genome by a Bioinformatics Approach.	Ahmed F, Sharma M, Al-Ghamdi AA, Al-Yami SM, Al-Salami AM, Refai MY, Warsi MK, Howladar SM, Baeshen MN.	Front Genet	10.3389/fgene.2020.572702	2020
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Metabolism	Site-Specific Incorporation of Selenocysteine Using an Expanded Genetic Code and Palladium-Mediated Chemical Deprotection.	Liu J, Zheng F, Cheng R, Li S, Rozovsky S, Wang Q, Wang L.	J Am Chem Soc	10.1021/jacs.8b04603	2018
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Enzymology	Biochemical characterization of the 8-hydroxy-5-deazaflavin-reactive hydrogenase from Methanosarcina barkeri Fusaro.	Michel R, Massanz C, Kostka S, Richter M, Fiebig K.	Eur J Biochem	10.1111/j.1432-1033.1995.727_3.x	1995
Enzymology	Purification and characterization of a membrane-bound enzyme complex from the sulfate-reducing archaeon Archaeoglobus fulgidus related to heterodisulfide reductase from methanogenic archaea.	Mander GJ, Duin EC, Linder D, Stetter KO, Hedderich R.	Eur J Biochem	10.1046/j.1432-1033.2002.02839.x	2002
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Metabolism	Substrate and accessory protein requirements and thermodynamics of acetyl-CoA synthesis and cleavage in Methanosarcina barkeri.	Grahame DA, DeMoll E.	Biochemistry	10.1021/bi00014a015	1995
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Enzymology	Catalytic properties, molecular composition and sequence alignments of pyruvate: ferredoxin oxidoreductase from the methanogenic archaeon Methanosarcina barkeri (strain Fusaro).	Bock AK, Kunow J, Glasemacher J, Schonheit P.	Eur J Biochem	10.1111/j.1432-1033.1996.0035n.x	1996
	Dose-Response Effects of 3-Nitrooxypropanol Combined with Low- and High-Concentrate Feed Proportions in the Dairy Cow Ration on Fermentation Parameters in a Rumen Simulation Technique.	Schilde M, von Soosten D, Huther L, Kersten S, Meyer U, Zeyner A, Danicke S.	Animals (Basel)	10.3390/ani11061784	2021
Metabolism	Formate Utilization by the Crenarchaeon Desulfurococcus amylolyticus.	Ergal I, Reischl B, Hasibar B, Manoharan L, Zipperle A, Bochmann G, Fuchs W, Rittmann SKR.	Microorganisms	10.3390/microorganisms8030454	2020
Enzymology	Biochemical Characterization of the Methylmercaptopropionate:Cob(I)alamin Methyltransferase from Methanosarcina acetivorans.	Fu H, Goettge MN, Metcalf WW.	J Bacteriol	10.1128/jb.00130-19	2019
Biotechnology	Graphene Facilitates Biomethane Production from Protein-Derived Glycine in Anaerobic Digestion.	Lin R, Deng C, Cheng J, Xia A, Lens PNL, Jackson SA, Dobson ADW, Murphy JD.	iScience	10.1016/j.isci.2018.11.030	2018
Metabolism	Tetrachloromethane-Degrading Bacterial Enrichment Cultures and Isolates from a Contaminated Aquifer.	Penny C, Gruffaz C, Nadalig T, Cauchie HM, Vuilleumier S, Bringel F.	Microorganisms	10.3390/microorganisms3030327	2015
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Genetics	Cas9-mediated genome editing in the methanogenic archaeon Methanosarcina acetivorans.	Nayak DD, Metcalf WW.	Proc Natl Acad Sci U S A	10.1073/pnas.1618596114	2017
Enzymology	Purification of a two-subunit cytochrome-b-containing heterodisulfide reductase from methanol-grown Methanosarcina barkeri.	Heiden S, Hedderich R, Setzke E, Thauer RK.	Eur J Biochem	10.1111/j.1432-1033.1994.tb18800.x	1994
Metabolism	Bioorthogonal protein-DNA conjugation methods for force spectroscopy.	Synakewicz M, Bauer D, Rief M, Itzhaki LS.	Sci Rep	10.1038/s41598-019-49843-1	2019
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Enzymology	Structure of the alpha2epsilon2 Ni-dependent CO dehydrogenase component of the Methanosarcina barkeri acetyl-CoA decarbonylase/synthase complex.	Gong W, Hao B, Wei Z, Ferguson DJ, Tallant T, Krzycki JA, Chan MK.	Proc Natl Acad Sci U S A	10.1073/pnas.0800415105	2008
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Metabolism	Structure of the heme biosynthetic Pseudomonas aeruginosa porphobilinogen synthase in complex with the antibiotic alaremycin.	Heinemann IU, Schulz C, Schubert WD, Heinz DW, Wang YG, Kobayashi Y, Awa Y, Wachi M, Jahn D, Jahn M.	Antimicrob Agents Chemother	10.1128/aac.00553-09	2010
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Enzymology	Identification of amino acids in the N-terminal domain of atypical methanogenic-type Seryl-tRNA synthetase critical for tRNA recognition.	Jaric J, Bilokapic S, Lesjak S, Crnkovic A, Ban N, Weygand-Durasevic I.	J Biol Chem	10.1074/jbc.m109.044099	2009
Metabolism	Genome-Guided Analysis and Whole Transcriptome Profiling of the Mesophilic Syntrophic Acetate Oxidising Bacterium Syntrophaceticus schinkii.	Manzoor S, Bongcam-Rudloff E, Schnurer A, Muller B.	PLoS One	10.1371/journal.pone.0166520	2016
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Metabolism	Translation termination in pyrrolysine-utilizing archaea.	Alkalaeva E, Eliseev B, Ambrogelly A, Vlasov P, Kondrashov FA, Gundllapalli S, Frolova L, Soll D, Kisselev L.	FEBS Lett	10.1016/j.febslet.2009.09.044	2009
Genetics	Comparative genomic inference suggests mixotrophic lifestyle for Thorarchaeota.	Liu Y, Zhou Z, Pan J, Baker BJ, Gu JD, Li M.	ISME J	10.1038/s41396-018-0060-x	2018
Metabolism	Glucose Metabolism and Acetate Switch in Archaea: the Enzymes in Haloferax volcanii.	Kuprat T, Ortjohann M, Johnsen U, Schonheit P.	J Bacteriol	10.1128/jb.00690-20	2021
Metabolism	Site-specific Acetylation of Histone H3 Decreases Polymerase beta Activity on Nucleosome Core Particles in Vitro.	Rodriguez Y, Hinz JM, Laughery MF, Wyrick JJ, Smerdon MJ.	J Biol Chem	10.1074/jbc.m116.725788	2016
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Metabolism	Hydrogen is a preferred intermediate in the energy-conserving electron transport chain of Methanosarcina barkeri.	Kulkarni G, Kridelbaugh DM, Guss AM, Metcalf WW.	Proc Natl Acad Sci U S A	10.1073/pnas.0905914106	2009
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Metabolism	Nucleotide-activated oligosaccharides are intermediates of the cell wall polysaccharide of Methanosarcina barkeri.	Hartmann E, Konig H.	Biol Chem Hoppe Seyler	10.1515/bchm3.1991.372.2.971	1991
Genetics	Metabolic Potential for Reductive Acetogenesis and a Novel Energy-Converting [NiFe] Hydrogenase in Bathyarchaeia From Termite Guts - A Genome-Centric Analysis.	Loh HQ, Herve V, Brune A.	Front Microbiol	10.3389/fmicb.2020.635786	2020
Metabolism	Function of methylcobalamin: coenzyme M methyltransferase isoenzyme II in Methanosarcina barkeri.	Yeliseev A, Gartner P, Harms U, Linder D, Thauer RK.	Arch Microbiol	10.1007/bf00249031	1993
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Metabolism	The physiological effect of heavy metals and volatile fatty acids on Methanococcus maripaludis S2.	Abdel Azim A, Rittmann SKR, Fino D, Bochmann G.	Biotechnol Biofuels	10.1186/s13068-018-1302-x	2018
Metabolism	Dehalogenation of trichlorofluoromethane (CFC-11) by Methanosarcina barkeri.	Krone UE, Thauer RK.	FEMS Microbiol Lett	10.1016/0378-1097(92)90629-3	1992
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Metabolism	CO₂ conversion to methane and biomass in obligate methylotrophic methanogens in marine sediments.	Yin X, Wu W, Maeke M, Richter-Heitmann T, Kulkarni AC, Oni OE, Wendt J, Elvert M, Friedrich MW.	ISME J	10.1038/s41396-019-0425-9	2019
Metabolism	A novel pathway for the biosynthesis of heme in Archaea: genome-based bioinformatic predictions and experimental evidence.	Storbeck S, Rolfes S, Raux-Deery E, Warren MJ, Jahn D, Layer G.	Archaea	10.1155/2010/175050	2010
Enzymology	Occurrence of D-amino acids in a few archaea and dehydrogenase activities in hyperthermophile Pyrobaculum islandicum.	Nagata Y, Tanaka K, Iida T, Kera Y, Yamada R, Nakajima Y, Fujiwara T, Fukumori Y, Yamanaka T, Koga Y, Tsuji S, Kawaguchi-Nagata K.	Biochim Biophys Acta	10.1016/s0167-4838(99)00208-3	1999
Genetics	The Methanosarcina barkeri genome: comparative analysis with Methanosarcina acetivorans and Methanosarcina mazei reveals extensive rearrangement within methanosarcinal genomes.	Maeder DL, Anderson I, Brettin TS, Bruce DC, Gilna P, Han CS, Lapidus A, Metcalf WW, Saunders E, Tapia R, Sowers KR.	J Bacteriol	10.1128/jb.00810-06	2006
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Metabolism	Reactivity of a paramagnetic enzyme--CO adduct in acetyl-CoA synthesis and cleavage.	Grahame DA, Khangulov S, DeMoll E.	Biochemistry	10.1021/bi9511494	1996
Metabolism	Cysteine biosynthesis pathway in the archaeon Methanosarcina barkeri encoded by acquired bacterial genes?	Kitabatake M, So MW, Tumbula DL, Soll D.	J Bacteriol	10.1128/jb.182.1.143-145.2000	2000
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Enzymology	Methanobacterium thermoautotrophicum encodes two multisubunit membrane-bound [NiFe] hydrogenases. Transcription of the operons and sequence analysis of the deduced proteins.	Tersteegen A, Hedderich R.	Eur J Biochem	10.1046/j.1432-1327.1999.00692.x	1999
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Metabolism	A multienzyme complex channels substrates and electrons through acetyl-CoA and methane biosynthesis pathways in Methanosarcina.	Lieber DJ, Catlett J, Madayiputhiya N, Nandakumar R, Lopez MM, Metcalf WW, Buan NR.	PLoS One	10.1371/journal.pone.0107563	2014
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Metabolism	Mutagenesis of the C1 oxidation pathway in Methanosarcina barkeri: new insights into the Mtr/Mer bypass pathway.	Welander PV, Metcalf WW.	J Bacteriol	10.1128/jb.01424-07	2008
Enzymology	Reductive activation of the corrinoid-containing enzyme involved in methyl group transfer between methyl-tetrahydromethanopterin and coenzyme M in Methanosarcina barkeri.	van de Wijngaard WM, Lugtigheid RL, van der Drift C.	Antonie Van Leeuwenhoek	10.1007/bf00580434	1991
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Metabolism	Development of a flow-fluorescence in situ hybridization protocol for the analysis of microbial communities in anaerobic fermentation liquor.	Nettmann E, Frohling A, Heeg K, Klocke M, Schluter O, Mumme J.	BMC Microbiol	10.1186/1471-2180-13-278	2013
Metabolism	3'-5' tRNAHis guanylyltransferase in bacteria.	Heinemann IU, Randau L, Tomko RJ, Soll D.	FEBS Lett	10.1016/j.febslet.2010.07.023	2010
Enzymology	Purification and properties of the heme- and iron-sulfur-containing heterodisulfide reductase from Methanosarcina thermophila.	Simianu M, Murakami E, Brewer JM, Ragsdale SW.	Biochemistry	10.1021/bi9726483	1998
Enzymology	Purification and properties of 5,10-methylenetetrahydromethanopterin dehydrogenase and 5,10-methylenetetrahydromethanopterin reductase, two coenzyme F420-dependent enzymes, from Methanosarcina barkeri.	te Brommelstroet BW, Geerts WJ, Keltjens JT, van der Drift C, Vogels GD.	Biochim Biophys Acta	10.1016/0167-4838(91)90072-8	1991
Metabolism	Ammonia assimilation and glutamate incorporation in coenzyme F420 derivatives of Methanosarcina barkeri.	Raemakers-Franken PC, Brand RJ, Kortstee AJ, Van der Drift C, Vogels GD.	Antonie Van Leeuwenhoek	10.1007/bf00583677	1991
Enzymology	Thiol:fumarate reductase (Tfr) from Methanobacterium thermoautotrophicum--identification of the catalytic sites for fumarate reduction and thiol oxidation.	Heim S, Kunkel A, Thauer RK, Hedderich R.	Eur J Biochem	10.1046/j.1432-1327.1998.2530292.x	1998
Metabolism	The complete biosynthesis of the genetically encoded amino acid pyrrolysine from lysine.	Gaston MA, Zhang L, Green-Church KB, Krzycki JA.	Nature	10.1038/nature09918	2011
Metabolism	Archaebiotics: proposed therapeutic use of archaea to prevent trimethylaminuria and cardiovascular disease.	Brugere JF, Borrel G, Gaci N, Tottey W, O'Toole PW, Malpuech-Brugere C.	Gut Microbes	10.4161/gmic.26749	2014
Metabolism	Tracing the Repertoire of Promiscuous Enzymes along the Metabolic Pathways in Archaeal Organisms.	Martinez-Nunez MA, Rodriguez-Escamilla Z, Rodriguez-Vazquez K, Perez-Rueda E.	Life (Basel)	10.3390/life7030030	2017
Metabolism	The MttB superfamily member MtyB from the human gut symbiont Eubacterium limosum is a cobalamin-dependent gamma-butyrobetaine methyltransferase.	Ellenbogen JB, Jiang R, Kountz DJ, Zhang L, Krzycki JA.	J Biol Chem	10.1016/j.jbc.2021.101327	2021
Enzymology	Overproduction and one-step purification of the N5,N10-methenyltetrahydromethanopterin cyclohydrolase (Mch) from the hyperthermophilic Methanopyrus kandleri.	Vaupel M, Vorholt JA, Thauer RK.	Extremophiles	10.1007/s007920050038	1998
Metabolism	Glycine betaine as a direct substrate for methanogens (Methanococcoides spp.).	Watkins AJ, Roussel EG, Parkes RJ, Sass H.	Appl Environ Microbiol	10.1128/aem.03076-13	2014
Enzymology	Structural basis for the site-specific incorporation of lysine derivatives into proteins.	Flugel V, Vrabel M, Schneider S.	PLoS One	10.1371/journal.pone.0096198	2014
Metabolism	Methanosarcina acetivorans contains a functional ISC system for iron-sulfur cluster biogenesis.	Deere TM, Prakash D, Lessner FH, Duin EC, Lessner DJ.	BMC Microbiol	10.1186/s12866-020-02014-z	2020
Metabolism	Mechanisms for Electron Uptake by Methanosarcina acetivorans during Direct Interspecies Electron Transfer.	Holmes DE, Zhou J, Ueki T, Woodard T, Lovley DR.	mBio	10.1128/mbio.02344-21	2021
Metabolism	Genome annotation provides insight into carbon monoxide and hydrogen metabolism in Rubrivivax gelatinosus.	Wawrousek K, Noble S, Korlach J, Chen J, Eckert C, Yu J, Maness PC.	PLoS One	10.1371/journal.pone.0114551	2014
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Metabolism	Pyrrolysyl-tRNA synthetase variants reveal ancestral aminoacylation function.	Ko JH, Wang YS, Nakamura A, Guo LT, Soll D, Umehara T.	FEBS Lett	10.1016/j.febslet.2013.08.018	2013
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Enzymology	The structure, function and properties of sirohaem decarboxylase--an enzyme with structural homology to a transcription factor family that is part of the alternative haem biosynthesis pathway.	Palmer DJ, Schroeder S, Lawrence AD, Deery E, Lobo SA, Saraiva LM, McLean KJ, Munro AW, Ferguson SJ, Pickersgill RW, Brown DG, Warren MJ.	Mol Microbiol	10.1111/mmi.12656	2014
Enzymology	Formylmethanofuran dehydrogenases from methanogenic Archaea. Substrate specificity, EPR properties and reversible inactivation by cyanide of the molybdenum or tungsten iron-sulfur proteins.	Bertram PA, Karrasch M, Schmitz RA, Bocher R, Albracht SP, Thauer RK.	Eur J Biochem	10.1111/j.1432-1033.1994.tb18646.x	1994
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Enzymology	The molybdenum cofactor of formylmethanofuran dehydrogenase from Methanosarcina barkeri is a molybdopterin guanine dinucleotide.	Karrasch M, Borner G, Thauer RK.	FEBS Lett	10.1016/0014-5793(90)81326-j	1990
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Metabolism	tRNA Modification Profiles and Codon-Decoding Strategies in Methanocaldococcus jannaschii.	Yu N, Jora M, Solivio B, Thakur P, Acevedo-Rocha CG, Randau L, de Crecy-Lagard V, Addepalli B, Limbach PA.	J Bacteriol	10.1128/jb.00690-18	2019
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Metabolism	A semi-synthetic organism that stores and retrieves increased genetic information.	Zhang Y, Ptacin JL, Fischer EC, Aerni HR, Caffaro CE, San Jose K, Feldman AW, Turner CR, Romesberg FE.	Nature	10.1038/nature24659	2017
Metabolism	Substrate and cofactor reactivity of a carbon monoxide dehydrogenase-corrinoid enzyme complex: stepwise reduction of iron-sulfur and corrinoid centers, the corrinoid Co2+/1+ redox midpoint potential, and overall synthesis of acetyl-CoA.	Grahame DA.	Biochemistry	10.1021/bi00091a033	1993
Metabolism	Air-adapted Methanosarcina acetivorans shows high methane production and develops resistance against oxygen stress.	Jasso-Chavez R, Santiago-Martinez MG, Lira-Silva E, Pineda E, Zepeda-Rodriguez A, Belmont-Diaz J, Encalada R, Saavedra E, Moreno-Sanchez R.	PLoS One	10.1371/journal.pone.0117331	2015
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Metabolism	An evolutionary approach to systematic discovery of novel deubiquitinases, applied to Legionella.	Hermanns T, Woiwode I, Guerreiro RF, Vogt R, Lammers M, Hofmann K.	Life Sci Alliance	10.26508/lsa.202000838	2020
Enzymology	The molybdoenzyme formylmethanofuran dehydrogenase from Methanosarcina barkeri contains a pterin cofactor.	Karrasch M, Borner G, Enssle M, Thauer RK.	Eur J Biochem	10.1111/j.1432-1033.1990.tb15627.x	1990
Phylogeny	Evolutionary History of the Photolyase/Cryptochrome Superfamily in Eukaryotes.	Mei Q, Dvornyk V.	PLoS One	10.1371/journal.pone.0135940	2015
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Metabolism	Hydroxyarchaetidylserine and hydroxyarchaetidyl-myo-inositol in Methanosarcina barkeri: polar lipids with a new ether core portion.	Nishihara M, Koga Y.	Biochim Biophys Acta	10.1016/0005-2760(91)90196-o	1991
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	Conformational study of the chromosomal protein MC1 from the archaebacterium Methanosarcina barkeri.	Imbert M, Laine B, Helbecque N, Mornon JP, Henichart JP, Sautiere P.	Biochim Biophys Acta	10.1016/0167-4838(90)90247-d	1990
Metabolism	Crystal structure of methylenetetrahydromethanopterin reductase (Mer) in complex with coenzyme F420: Architecture of the F420/FMN binding site of enzymes within the nonprolyl cis-peptide containing bacterial luciferase family.	Aufhammer SW, Warkentin E, Ermler U, Hagemeier CH, Thauer RK, Shima S.	Protein Sci	10.1110/ps.041289805	2005
Enzymology	Structures and activities of archaeal members of the LigD 3'-phosphoesterase DNA repair enzyme superfamily.	Smith P, Nair PA, Das U, Zhu H, Shuman S.	Nucleic Acids Res	10.1093/nar/gkq1163	2011
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Metabolism	Top-down proteomics reveals novel protein forms expressed in Methanosarcina acetivorans.	Ferguson JT, Wenger CD, Metcalf WW, Kelleher NL.	J Am Soc Mass Spectrom	10.1016/j.jasms.2009.05.014	2009
Genetics	Metabolic Modeling Elucidates the Transactions in the Rumen Microbiome and the Shifts Upon Virome Interactions.	Islam MM, Fernando SC, Saha R.	Front Microbiol	10.3389/fmicb.2019.02412	2019
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Metabolism	Dicyclohexylcarbodiimide-binding protein is a subunit of the Methanosarcina barkeri ATPase complex.	Inatomi K, Maeda M, Futai M.	Biochem Biophys Res Commun	10.1016/0006-291x(89)90856-5	1989
Metabolism	Different isozymes of methylcobalamin:2-mercaptoethanesulfonate methyltransferase predominate in methanol- versus acetate-grown Methanosarcina barkeri.	Grahame DA.	J Biol Chem	10.1016/s0021-9258(18)51571-4	1989
Metabolism	Molecular Hydrogen, a Neglected Key Driver of Soil Biogeochemical Processes.	Piche-Choquette S, Constant P.	Appl Environ Microbiol	10.1128/aem.02418-18	2019
Metabolism	Redox-dependent complex formation by an ATP-dependent activator of the corrinoid/iron-sulfur protein.	Hennig SE, Jeoung JH, Goetzl S, Dobbek H.	Proc Natl Acad Sci U S A	10.1073/pnas.1117126109	2012
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	The argG gene of Streptomyces clavuligerus has low homology to unstable argG from other actinomycetes: effect of amplification on clavulanic acid biosynthesis.	Rodriguez-Garcia A, Martin JF, Liras P.	Gene	10.1016/0378-1119(95)00667-2	1995
Enzymology	Purification of the F420-reducing hydrogenase from Methanosarcina barkeri (strain Fusaro).	Fiebig K, Friedrich B.	Eur J Biochem	10.1111/j.1432-1033.1989.tb14992.x	1989
Metabolism	Optical control of MAP kinase kinase 6 (MKK6) reveals that it has divergent roles in pro-apoptotic and anti-proliferative signaling.	Rahman SMT, Zhou W, Deiters A, Haugh JM.	J Biol Chem	10.1074/jbc.ra119.012079	2020
Genetics	Genome-scale metabolic model analysis indicates low energy production efficiency in marine ammonia-oxidizing archaea.	Li F, Xie W, Yuan Q, Luo H, Li P, Chen T, Zhao X, Wang Z, Ma H.	AMB Express	10.1186/s13568-018-0635-y	2018
	Designer tRNAs for efficient incorporation of non-canonical amino acids by the pyrrolysine system in mammalian cells.	Serfling R, Lorenz C, Etzel M, Schicht G, Bottke T, Morl M, Coin I.	Nucleic Acids Res	10.1093/nar/gkx1156	2018
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Metabolism	Pseudomonas spp. are key players in agricultural biogas substrate degradation.	Buettner C, von Bergen M, Jehmlich N, Noll M.	Sci Rep	10.1038/s41598-019-49313-8	2019
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Enzymology	Paramagnetic centers of carbon monoxide dehydrogenase from aceticlastic Methanosarcina barkeri.	Krzycki JA, Mortenson LE, Prince RC.	J Biol Chem	10.1016/s0021-9258(18)83223-9	1989
Metabolism	An intertwined evolutionary history of methanogenic archaea and sulfate reduction.	Susanti D, Mukhopadhyay B.	PLoS One	10.1371/journal.pone.0045313	2012
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Metabolism	Unleashing hydrogenase activity in carbon monoxide dehydrogenase/acetyl-CoA synthase and pyruvate:ferredoxin oxidoreductase.	Menon S, Ragsdale SW.	Biochemistry	10.1021/bi9615598	1996
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Metabolism	Coenzyme F₄₂₀-Dependent Glucose-6-Phosphate Dehydrogenase-Coupled Polyglutamylation of Coenzyme F₄₂₀ in Mycobacteria.	Purwantini E, Loganathan U, Mukhopadhyay B.	J Bacteriol	10.1128/jb.00375-18	2018
Metabolism	An aminoacyl-tRNA synthetase that specifically activates pyrrolysine.	Polycarpo C, Ambrogelly A, Berube A, Winbush SM, McCloskey JA, Crain PF, Wood JL, Soll D.	Proc Natl Acad Sci U S A	10.1073/pnas.0405362101	2004
Metabolism	Comparative Proteomics of Rubber Latex Revealed Multiple Protein Species of REF/SRPP Family Respond Diversely to Ethylene Stimulation among Different Rubber Tree Clones.	Tong Z, Wang D, Sun Y, Yang Q, Meng X, Wang L, Feng W, Li L, Wurtele ES, Wang X.	Int J Mol Sci	10.3390/ijms18050958	2017
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Metabolism	Reductive dechlorination of 1,2-dichloroethane and chloroethane by cell suspensions of methanogenic bacteria.	Holliger C, Schraa G, Stams AJ, Zehnder AJ.	Biodegradation	10.1007/bf00119762	1990
Metabolism	Phototriggered protein syntheses by using (7-diethylaminocoumarin-4-yl)methoxycarbonyl-caged aminoacyl tRNAs.	Ohtsuki T, Kanzaki S, Nishimura S, Kunihiro Y, Sisido M, Watanabe K.	Nat Commun	10.1038/ncomms12501	2016
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Metabolism	Ethane production by Methanosarcina barkeri during growth in ethanol supplemented medium.	Belay N, Daniels L.	Antonie Van Leeuwenhoek	10.1007/bf00419199	1988
Phylogeny	Estimation of methanogen biomass by quantitation of coenzyme M.	Elias DA, Krumholz LR, Tanner RS, Suflita JM.	Appl Environ Microbiol	10.1128/aem.65.12.5541-5545.1999	1999
Enzymology	Crystallization and preliminary X-ray crystallographic analysis of the catalytic domain of pyrrolysyl-tRNA synthetase from the methanogenic archaeon Methanosarcina mazei.	Yanagisawa T, Ishii R, Fukunaga R, Nureki O, Yokoyama S.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309106036700	2006
Metabolism	Electron-transport-driven sodium extrusion during methanogenesis from formaldehyde and molecular hydrogen by Methanosarcina barkeri.	Muller V, Winner C, Gottschalk G.	Eur J Biochem	10.1111/j.1432-1033.1988.tb14478.x	1988
Metabolism	Proton translocation coupled to the oxidation of carbon monoxide to CO2 and H2 in Methanosarcina barkeri.	Bott M, Thauer RK.	Eur J Biochem	10.1111/j.1432-1033.1989.tb14576.x	1989
Metabolism	Examining Pathways of Iron and Sulfur Acquisition, Trafficking, Deployment, and Storage in Mineral-Grown Methanogen Cells.	Payne D, Shepard EM, Spietz RL, Steward K, Brumfield S, Young M, Bothner B, Broderick WE, Broderick JB, Boyd ES.	J Bacteriol	10.1128/jb.00146-21	2021
Phylogeny	Mass spectrometry defines the stoichiometry of ribosomal stalk complexes across the phylogenetic tree.	Gordiyenko Y, Videler H, Zhou M, McKay AR, Fucini P, Biegel E, Muller V, Robinson CV.	Mol Cell Proteomics	10.1074/mcp.m000072-mcp201	2010
Genetics	Methanobacterium formicicum as a target rumen methanogen for the development of new methane mitigation interventions: A review.	Chellapandi P, Bharathi M, Sangavai C, Prathiviraj R.	Vet Anim Sci	10.1016/j.vas.2018.09.001	2018
Enzymology	Amino acid sequence of the alpha and beta subunits of Methanosarcina barkeri ATPase deduced from cloned genes. Similarity to subunits of eukaryotic vacuolar and F0F1-ATPases.	Inatomi K, Eya S, Maeda M, Futai M.	J Biol Chem	10.1016/s0021-9258(18)60411-9	1989
Phylogeny	Comparative analysis of the methanogen diversity in horse and pony by using mcrA gene and archaeal 16s rRNA gene clone libraries.	Lwin KO, Matsui H.	Archaea	10.1155/2014/483574	2014
Biotechnology	Non-Standard Genetic Codes Define New Concepts for Protein Engineering.	Bezerra AR, Guimaraes AR, Santos MA.	Life (Basel)	10.3390/life5041610	2015
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Enzymology	The genome characteristics and predicted function of methyl-group oxidation pathway in the obligate aceticlastic methanogens, Methanosaeta spp.	Zhu J, Zheng H, Ai G, Zhang G, Liu D, Liu X, Dong X.	PLoS One	10.1371/journal.pone.0036756	2012
Metabolism	Comparison of enteric methane yield and diversity of ruminal methanogens in cattle and buffaloes fed on the same diet.	Malik PK, Trivedi S, Mohapatra A, Kolte AP, Sejian V, Bhatta R, Rahman H.	PLoS One	10.1371/journal.pone.0256048	2021
Metabolism	Methane-Fueled Syntrophy through Extracellular Electron Transfer: Uncovering the Genomic Traits Conserved within Diverse Bacterial Partners of Anaerobic Methanotrophic Archaea.	Skennerton CT, Chourey K, Iyer R, Hettich RL, Tyson GW, Orphan VJ.	mBio	10.1128/mbio.00530-17	2017
Metabolism	A Ferredoxin- and F420H2-Dependent, Electron-Bifurcating, Heterodisulfide Reductase with Homologs in the Domains Bacteria and Archaea.	Yan Z, Wang M, Ferry JG.	mBio	10.1128/mbio.02285-16	2017
Metabolism	Functional interactions between posttranslationally modified amino acids of methyl-coenzyme M reductase in Methanosarcina acetivorans.	Nayak DD, Liu A, Agrawal N, Rodriguez-Carerro R, Dong SH, Mitchell DA, Nair SK, Metcalf WW.	PLoS Biol	10.1371/journal.pbio.3000507	2020
Biotechnology	An insight into the bioelectrochemical photoreduction of CO₂ to value-added chemicals.	Gupta P, Noori MT, Nunez AE, Verma N.	iScience	10.1016/j.isci.2021.102294	2021
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Metabolism	Hydrogen production by rumen holotrich protozoa: effects of oxygen and implications for metabolic control by in situ conditions.	Lloyd D, Hillman K, Yarlett N, Williams AG.	J Protozool	10.1111/j.1550-7408.1989.tb01075.x	1989
Metabolism	The role of sodium ions in methanogenesis. Formaldehyde oxidation to CO2 and 2H2 in methanogenic bacteria is coupled with primary electrogenic Na+ translocation at a stoichiometry of 2-3 Na+/CO2.	Kaesler B, Schonheit P.	Eur J Biochem	10.1111/j.1432-1033.1989.tb15010.x	1989
	Interactions between nitrogen fixation and osmoregulation in the methanogenic archaeon methanosarcina barkeri 227	Brabban AD, Orcutt EN, Zinder SH.	Appl Environ Microbiol	10.1128/aem.65.3.1222-1227.1999	1999
Metabolism	Interactions between the promoter regions of nitrogenase structural genes (nifHDK2) and DNA-binding proteins from N2- and ammonium-grown cells of the archaeon Methanosarcina barkeri 227.	Chien Y, Helmann JD, Zinder SH.	J Bacteriol	10.1128/jb.180.10.2723-2728.1998	1998
Enzymology	Novel, acid-labile, hydroxydiether lipid cores in methanogenic bacteria.	Sprott GD, Ekiel I, Dicaire C.	J Biol Chem	10.1016/s0021-9258(18)77411-5	1990
Metabolism	A methyl-CoM methylreductase system from methanogenic bacterium strain Gö 1 not requiring ATP for activity.	Deppenmeier U, Blaut M, Jussofie A, Gottschalk G.	FEBS Lett	10.1016/0014-5793(88)81031-7	1988
Metabolism	A methylated lysine is a switch point for conformational communication in the chaperone Hsp90.	Rehn A, Lawatscheck J, Jokisch ML, Mader SL, Luo Q, Tippel F, Blank B, Richter K, Lang K, Kaila VRI, Buchner J.	Nat Commun	10.1038/s41467-020-15048-8	2020
Metabolism	Role of vitamin B12 in methyl transfer for methane biosynthesis by Methanosarcina barkeri.	Wood JM, Moura I, Moura JJ, Santos MH, Xavier AV, LeGall J, Scandellari M.	Science	10.1126/science.7063887	1982
Enzymology	The trimethylamine methyltransferase gene and multiple dimethylamine methyltransferase genes of Methanosarcina barkeri contain in-frame and read-through amber codons.	Paul L, Ferguson DJ, Krzycki JA.	J Bacteriol	10.1128/jb.182.9.2520-2529.2000	2000
Metabolism	Interconversion of F430 derivatives of methanogenic bacteria.	Keltjens JT, Hermans JM, Rijsdijk GJ, van der Drift C, Vogels GD.	Antonie Van Leeuwenhoek	10.1007/bf00443579	1988
	Structural, mass and elemental analyses of storage granules in methanogenic archaeal cells.	Toso DB, Henstra AM, Gunsalus RP, Zhou ZH.	Environ Microbiol	10.1111/j.1462-2920.2011.02531.x	2011
Metabolism	The bidirectional NiFe-hydrogenase in Synechocystis sp. PCC 6803 is reduced by flavodoxin and ferredoxin and is essential under mixotrophic, nitrate-limiting conditions.	Gutekunst K, Chen X, Schreiber K, Kaspar U, Makam S, Appel J.	J Biol Chem	10.1074/jbc.m113.526376	2014
Metabolism	Modulation of Central Carbon Metabolism by Acetylation of Isocitrate Lyase in Mycobacterium tuberculosis.	Bi J, Wang Y, Yu H, Qian X, Wang H, Liu J, Liu J, Zhang X.	Sci Rep	10.1038/srep44826	2017
Metabolism	In vitro methane and methyl coenzyme M formation from acetate: evidence that acetyl-CoA is the required intermediate activated form of acetate.	Grahame DA, Stadtman TC.	Biochem Biophys Res Commun	10.1016/s0006-291x(87)80114-6	1987
Metabolism	Site-specific ubiquitylation acts as a regulator of linker histone H1.	Hollmuller E, Geigges S, Niedermeier ML, Kammer KM, Kienle SM, Rosner D, Scheffner M, Marx A, Stengel F.	Nat Commun	10.1038/s41467-021-23636-5	2021
Metabolism	Geranylgeranyl reductase and ferredoxin from Methanosarcina acetivorans are required for the synthesis of fully reduced archaeal membrane lipid in Escherichia coli cells.	Isobe K, Ogawa T, Hirose K, Yokoi T, Yoshimura T, Hemmi H.	J Bacteriol	10.1128/jb.00927-13	2014
	Comparative analysis of genes encoding methyl coenzyme M reductase in methanogenic bacteria.	Klein A, Allmansberger R, Bokranz M, Knaub S, Muller B, Muth E.	Mol Gen Genet	10.1007/bf00339610	1988
Metabolism	Involvement of methyltransferase-activating protein and methyltransferase 2 isoenzyme II in methylamine:coenzyme M methyltransferase reactions in Methanosarcina barkeri Fusaro.	Wassenaar RW, Daas PJ, Geerts WJ, Keltjens JT, van der Drift C.	J Bacteriol	10.1128/jb.178.23.6937-6944.1996	1996
Enzymology	Ferredoxin from Methanosarcina barkeri: evidence for the presence of a three-iron center.	Moura I, Moura JJ, Huynh BH, Santos H, LeGall J, Xavier AV.	Eur J Biochem	10.1111/j.1432-1033.1982.tb06751.x	1982
Metabolism	Unusual Butane- and Pentanetriol-Based Tetraether Lipids in Methanomassiliicoccus luminyensis, a Representative of the Seventh Order of Methanogens.	Becker KW, Elling FJ, Yoshinaga MY, Sollinger A, Urich T, Hinrichs KU.	Appl Environ Microbiol	10.1128/aem.00772-16	2016
Metabolism	Modeling methanogenesis with a genome-scale metabolic reconstruction of Methanosarcina barkeri.	Feist AM, Scholten JC, Palsson BO, Brockman FJ, Ideker T.	Mol Syst Biol	10.1038/msb4100046	2006
Metabolism	Energy conservation by oxidation of formate to carbon dioxide and hydrogen via a sodium ion current in a hyperthermophilic archaeon.	Lim JK, Mayer F, Kang SG, Muller V.	Proc Natl Acad Sci U S A	10.1073/pnas.1407056111	2014
Metabolism	Growth of Methanosarcina barkeri (Fusaro) under nonmethanogenic conditions by the fermentation of pyruvate to acetate: ATP synthesis via the mechanism of substrate level phosphorylation.	Bock AK, Schonheit P.	J Bacteriol	10.1128/jb.177.8.2002-2007.1995	1995
	Inter-phylum HGT has shaped the metabolism of many mesophilic and anaerobic bacteria.	Caro-Quintero A, Konstantinidis KT.	ISME J	10.1038/ismej.2014.193	2015
	New perspectives on bacterial ferredoxin evolution.	George DG, Hunt LT, Yeh LS, Barker WC.	J Mol Evol	10.1007/bf02105801	1985
Metabolism	Lysine-2,3-aminomutase and beta-lysine acetyltransferase genes of methanogenic archaea are salt induced and are essential for the biosynthesis of Nepsilon-acetyl-beta-lysine and growth at high salinity.	Pfluger K, Baumann S, Gottschalk G, Lin W, Santos H, Muller V.	Appl Environ Microbiol	10.1128/aem.69.10.6047-6055.2003	2003
Phylogeny	Cloning, functional organization, transcript studies, and phylogenetic analysis of the complete nitrogenase structural genes (nifHDK2) and associated genes in the archaeon Methanosarcina barkeri 227.	Chien YT, Zinder SH.	J Bacteriol	10.1128/jb.178.1.143-148.1996	1996
Metabolism	Functional Role of MrpA in the MrpABCDEFG Na+/H+ Antiporter Complex from the Archaeon Methanosarcina acetivorans.	Jasso-Chavez R, Diaz-Perez C, Rodriguez-Zavala JS, Ferry JG.	J Bacteriol	10.1128/jb.00662-16	2017
Pathogenicity	Inhibition of methanogenesis in pure cultures by ammonia, fatty acids, and heavy metals, and protection against heavy metal toxicity by sewage sludge.	Jarrell KF, Saulnier M, Ley A.	Can J Microbiol	10.1139/m87-093	1987
Enzymology	Purification and properties of N5,N10-methylenetetrahydromethanopterin reductase (coenzyme F420-dependent) from the extreme thermophile Methanopyrus kandleri.	Ma K, Linder D, Stetter KO, Thauer RK.	Arch Microbiol	10.1007/bf00245355	1991
Metabolism	A Robust and Quantitative Reporter System To Evaluate Noncanonical Amino Acid Incorporation in Yeast.	Stieglitz JT, Kehoe HP, Lei M, Van Deventer JA.	ACS Synth Biol	10.1021/acssynbio.8b00260	2018
	Kinetic study and mathematical modeling of methanogenesis of acetate using pure cultures of methanogens.	Yang ST, Okos MR.	Biotechnol Bioeng	10.1002/bit.260300510	1987
Metabolism	Complete degradation of carbohydrate to carbon dioxide and methane by syntrophic cultures of Acetobacterium woodii and Methanosarcina barkeri.	Winter J, Wolfe RS.	Arch Microbiol	10.1007/bf00409211	1979
Metabolism	Chloroform degradation in methanogenic methanol enrichment cultures and by Methanosarcina barkeri 227.	Bagley DM, Gossett JM.	Appl Environ Microbiol	10.1128/aem.61.9.3195-3201.1995	1995
Metabolism	Characterizing the metabolism of Dehalococcoides with a constraint-based model.	Ahsanul Islam M, Edwards EA, Mahadevan R.	PLoS Comput Biol	10.1371/journal.pcbi.1000887	2010
Phylogeny	Archaea on human skin.	Probst AJ, Auerbach AK, Moissl-Eichinger C.	PLoS One	10.1371/journal.pone.0065388	2013
Metabolism	Genome-scale metabolic reconstructions of Bifidobacterium adolescentis L2-32 and Faecalibacterium prausnitzii A2-165 and their interaction.	El-Semman IE, Karlsson FH, Shoaie S, Nookaew I, Soliman TH, Nielsen J.	BMC Syst Biol	10.1186/1752-0509-8-41	2014
	The responses of an anaerobic microorganism, Yersinia intermedia MASE-LG-1 to individual and combined simulated Martian stresses.	Beblo-Vranesevic K, Bohmeier M, Perras AK, Schwendner P, Rabbow E, Moissl-Eichinger C, Cockell CS, Pukall R, Vannier P, Marteinsson VT, Monaghan EP, Ehrenfreund P, Garcia-Descalzo L, Gomez F, Malki M, Amils R, Gaboyer F, Westall F, Cabezas P, Walter N, Rettberg P.	PLoS One	10.1371/journal.pone.0185178	2017
Metabolism	Selective recognition of histone crotonylation by double PHD fingers of MOZ and DPF2.	Xiong X, Panchenko T, Yang S, Zhao S, Yan P, Zhang W, Xie W, Li Y, Zhao Y, Allis CD, Li H.	Nat Chem Biol	10.1038/nchembio.2218	2016
Metabolism	Engineering the respiratory membrane-bound hydrogenase of the hyperthermophilic archaeon Pyrococcus furiosus and characterization of the catalytically active cytoplasmic subcomplex.	McTernan PM, Chandrayan SK, Wu CH, Vaccaro BJ, Lancaster WA, Adams MW, Adams MW.	Protein Eng Des Sel	10.1093/protein/gzu051	2015
	Acetate, methanol and carbon dioxide as substrates for growth of Methanosarcina barkeri.	Hutten TJ, Bongaerts HC, van der Drift C, Vogels GD.	Antonie Van Leeuwenhoek	10.1007/bf00394016	1980
Metabolism	Genome sequence of a mesophilic hydrogenotrophic methanogen Methanocella paludicola, the first cultivated representative of the order Methanocellales.	Sakai S, Takaki Y, Shimamura S, Sekine M, Tajima T, Kosugi H, Ichikawa N, Tasumi E, Hiraki AT, Shimizu A, Kato Y, Nishiko R, Mori K, Fujita N, Imachi H, Takai K.	PLoS One	10.1371/journal.pone.0022898	2011
Metabolism	Proton-motive-force-driven formation of CO from CO2 and H2 in methanogenic bacteria.	Bott M, Thauer RK.	Eur J Biochem	10.1111/j.1432-1033.1987.tb13434.x	1987
	An overview of physico-chemical mechanisms of biogas production by microbial communities: a step towards sustainable waste management.	Goswami R, Chattopadhyay P, Shome A, Banerjee SN, Chakraborty AK, Mathew AK, Chaudhury S.	3 Biotech	10.1007/s13205-016-0395-9	2016
	Computational identification of obligatorily autocatalytic replicators embedded in metabolic networks.	Kun A, Papp B, Szathmary E.	Genome Biol	10.1186/gb-2008-9-3-r51	2008
Metabolism	Methanogenesis and ATP synthesis in methanogenic bacteria at low electrochemical proton potentials. An explanation for the apparent uncoupler insensitivity of ATP synthesis.	Kaesler B, Schonheit P.	Eur J Biochem	10.1111/j.1432-1033.1988.tb14081.x	1988
Phylogeny	Mapping hidden potential identity elements by computing the average discriminating power of individual tRNA positions.	Szenes A, Pal G.	DNA Res	10.1093/dnares/dss008	2012
Metabolism	Ammonia switch-off of nitrogen fixation in the methanogenic archaeon Methanococcus maripaludis: mechanistic features and requirement for the novel GlnB homologues, NifI(1) and NifI(2).	Kessler PS, Daniel C, Leigh JA.	J Bacteriol	10.1128/jb.183.3.882-889.2001	2001
	Variations in Temperature Sensitivity (Q10) of CH4 Emission from a Subtropical Estuarine Marsh in Southeast China.	Wang C, Lai DY, Tong C, Wang W, Huang J, Zeng C.	PLoS One	10.1371/journal.pone.0125227	2015
Metabolism	Analyses of soil microbial community compositions and functional genes reveal potential consequences of natural forest succession.	Cong J, Yang Y, Liu X, Lu H, Liu X, Zhou J, Li D, Yin H, Ding J, Zhang Y.	Sci Rep	10.1038/srep10007	2015
Metabolism	Oxaloacetate synthesis in the methanarchaeon Methanosarcina barkeri: pyruvate carboxylase genes and a putative Escherichia coli-type bifunctional biotin protein ligase gene (bpl/birA) exhibit a unique organization.	Mukhopadhyay B, Purwantini E, Kreder CL, Wolfe RS.	J Bacteriol	10.1128/jb.183.12.3804-3810.2001	2001
Enzymology	Assessment of the microbial ecology of ruminal methanogens in cattle with different feed efficiencies.	Zhou M, Hernandez-Sanabria E, Guan LL.	Appl Environ Microbiol	10.1128/aem.02815-08	2009
Enzymology	Paths of lateral gene transfer of lysyl-aminoacyl-tRNA synthetases with a unique evolutionary transition stage of prokaryotes coding for class I and II varieties by the same organisms.	Shaul S, Nussinov R, Pupko T.	BMC Evol Biol	10.1186/1471-2148-6-22	2006
Pathogenicity	Towards a generic prototyping approach for therapeutically-relevant peptides and proteins in a cell-free translation system.	Wu Y, Cui Z, Huang YH, de Veer SJ, Aralov AV, Guo Z, Moradi SV, Hinton AO, Deuis JR, Guo S, Chen KE, Collins BM, Vetter I, Herzig V, Jones A, Cooper MA, King GF, Craik DJ, Alexandrov K, Mureev S.	Nat Commun	10.1038/s41467-021-27854-9	2022
Metabolism	Coenzyme M methylase activity of the 480-kilodalton corrinoid protein from Methanosarcina barkeri.	Tallant TC, Krzycki JA.	J Bacteriol	10.1128/jb.178.5.1295-1301.1996	1996
	Bioenergetics of methanogenesis from acetate by Methanosarcina barkeri.	Peinemann S, Muller V, Blaut M, Gottschalk G.	J Bacteriol	10.1128/jb.170.3.1369-1372.1988	1988
Metabolism	Microbial populations involved in cycling of dimethyl sulfide and methanethiol in freshwater sediments.	Lomans BP, Luderer R, Steenbakkers P, Pol A, van Der Drift C, Vogels GD, Op den Camp HJ.	Appl Environ Microbiol	10.1128/aem.67.3.1044-1051.2001	2001
Metabolism	Expanding the genetic code of yeast for incorporation of diverse unnatural amino acids via a pyrrolysyl-tRNA synthetase/tRNA pair.	Hancock SM, Uprety R, Deiters A, Chin JW.	J Am Chem Soc	10.1021/ja104609m	2010
Metabolism	Carboxydotrophic growth of Geobacter sulfurreducens.	Geelhoed JS, Henstra AM, Stams AJ.	Appl Microbiol Biotechnol	10.1007/s00253-015-7033-z	2016
Metabolism	Trans-editing of mischarged tRNAs.	Ahel I, Korencic D, Ibba M, Soll D.	Proc Natl Acad Sci U S A	10.1073/pnas.2136934100	2003
Pathogenicity	Generation of dominant selectable markers for resistance to pseudomonic acid by cloning and mutagenesis of the ileS gene from the archaeon Methanosarcina barkeri fusaro.	Boccazzi P, Zhang JK, Metcalf WW.	J Bacteriol	10.1128/jb.182.9.2611-2618.2000	2000
Enzymology	Purification and characterization of carbon monoxide dehydrogenase, a nickel, zinc, iron-sulfur protein, from Rhodospirillum rubrum.	Bonam D, Ludden PW.	J Biol Chem	10.1016/s0021-9258(18)61456-5	1987
	Stable Carbon Isotope Fractionation by Methanosarcina barkeri during Methanogenesis from Acetate, Methanol, or Carbon Dioxide-Hydrogen.	Krzycki JA, Kenealy WR, Deniro MJ, Zeikus JG.	Appl Environ Microbiol	10.1128/aem.53.10.2597-2599.1987	1987
Pathogenicity	Identification of two mutations increasing the methanol tolerance of Corynebacterium glutamicum.	Lessmeier L, Wendisch VF.	BMC Microbiol	10.1186/s12866-015-0558-6	2015
	Lack of peptidoglycan in the cell walls of Methanosarcina barkeri.	Kandler O, Hippe H.	Arch Microbiol	10.1007/bf00428580	1977
Enzymology	Isolation and characterization of methanogenic bacteria from landfills.	Fielding ER, Archer DB, Conway de Macario E, Macario AJ.	Appl Environ Microbiol	10.1128/aem.54.3.835-836.1988	1988
	Conservation of structure in the human gene encoding argininosuccinate synthetase and the argG genes of the archaebacteria Methanosarcina barkeri MS and Methanococcus vannielii.	Morris CJ, Reeve JN.	J Bacteriol	10.1128/jb.170.7.3125-3130.1988	1988
	Selenite Reduction by Anaerobic Microbial Aggregates: Microbial Community Structure, and Proteins Associated to the Produced Selenium Spheres.	Gonzalez-Gil G, Lens PN, Saikaly PE.	Front Microbiol	10.3389/fmicb.2016.00571	2016
Metabolism	Structure of the cobalamin-binding protein of a putative O-demethylase from Desulfitobacterium hafniense DCB-2.	Sjuts H, Dunstan MS, Fisher K, Leys D.	Acta Crystallogr D Biol Crystallogr	10.1107/s0907444913011323	2013
Metabolism	Efficient viral delivery system for unnatural amino acid mutagenesis in mammalian cells.	Chatterjee A, Xiao H, Bollong M, Ai HW, Schultz PG.	Proc Natl Acad Sci U S A	10.1073/pnas.1309584110	2013
Pathogenicity	Pattern of organotin inhibition of methanogenic bacteria.	Boopathy R, Daniels L.	Appl Environ Microbiol	10.1128/aem.57.4.1189-1193.1991	1991
Enzymology	A rapid and sensitive assay for quantifying the activity of both aerobic and anaerobic ribonucleotide reductases acting upon any or all substrates.	Levitz TS, Andree GA, Jonnalagadda R, Dawson CD, Bjork RE, Drennan CL.	PLoS One	10.1371/journal.pone.0269572	2022
Metabolism	Hydrogen-using bacteria in a methanogenic acetate enrichment culture.	Archer DB.	J Appl Bacteriol	10.1111/j.1365-2672.1984.tb04703.x	1984
Metabolism	Comparative genomic analysis of evolutionarily conserved but functionally uncharacterized membrane proteins in archaea: Prediction of novel components of secretion, membrane remodeling and glycosylation systems.	Makarova KS, Galperin MY, Koonin EV.	Biochimie	10.1016/j.biochi.2015.01.004	2015
	Oxygen sensitivity of methanogenic bacteria.	Kiener A, Leisinger T.	Syst Appl Microbiol	10.1016/s0723-2020(83)80017-4	1983
Enzymology	Novel domain arrangement in the crystal structure of a truncated acetyl-CoA synthase from Moorella thermoacetica.	Volbeda A, Darnault C, Tan X, Lindahl PA, Fontecilla-Camps JC.	Biochemistry	10.1021/bi9003952	2009
Enzymology	Quantification of coenzymes and related compounds from methanogenic bacteria by high-performance liquid chromatography.	Van Beelen P, Geerts WJ, Pol A, Vogels GD.	Anal Biochem	10.1016/0003-2697(83)90171-9	1983
Genetics	Genome-scale reconstruction and analysis of the metabolic network in the hyperthermophilic archaeon Sulfolobus solfataricus.	Ulas T, Riemer SA, Zaparty M, Siebers B, Schomburg D.	PLoS One	10.1371/journal.pone.0043401	2012
	Site-Specific Labelling of Multidomain Proteins by Amber Codon Suppression.	Heil CS, Rittner A, Goebel B, Beyer D, Grininger M.	Sci Rep	10.1038/s41598-018-33115-5	2018
	CRISPR-Cas3 induces broad and unidirectional genome editing in human cells.	Morisaka H, Yoshimi K, Okuzaki Y, Gee P, Kunihiro Y, Sonpho E, Xu H, Sasakawa N, Naito Y, Nakada S, Yamamoto T, Sano S, Hotta A, Takeda J, Mashimo T.	Nat Commun	10.1038/s41467-019-13226-x	2019
	Dynamic epistasis for different alleles of the same gene.	Xu L, Barker B, Gu Z.	Proc Natl Acad Sci U S A	10.1073/pnas.1121507109	2012
	Biomethane potential of industrial paper wastes and investigation of the methanogenic communities involved.	Walter A, Silberberger S, Juarez MF, Insam H, Franke-Whittle IH.	Biotechnol Biofuels	10.1186/s13068-016-0435-z	2016
Metabolism	Comparison of various microbial inocula for the efficient anaerobic digestion of Laminaria hyperborea.	Sutherland AD, Varela JC.	BMC Biotechnol	10.1186/1472-6750-14-7	2014
Enzymology	Seasonal transition of active bacterial and archaeal communities in relation to water management in paddy soils.	Itoh H, Ishii S, Shiratori Y, Oshima K, Otsuka S, Hattori M, Senoo K.	Microbes Environ	10.1264/jsme2.me13030	2013
Transcriptome	Different substrate regimes determine transcriptional profiles and gene co-expression in Methanosarcina barkeri (DSM 800).	Lin Q, Fang X, Ho A, Li J, Yan X, Tu B, Li C, Li J, Yao M, Li X	Appl Microbiol Biotechnol	10.1007/s00253-017-8457-4	2017
Genetics	F0F1-ATPase genes from an archaebacterium, Methanosarcina barkeri.	Sumi M, Yohda M, Koga Y, Yoshida M	Biochem Biophys Res Commun	10.1006/bbrc.1997.7809	1997
Metabolism	In vivo 31P- and 13C-NMR studies of ATP synthesis and methane formation by Methanosarcina barkeri.	Santos H, Fareleira P, Toci R, LeGall J, Peck HD Jr, Xavier AV	Eur J Biochem	10.1111/j.1432-1033.1989.tb14663.x	1989
Enzymology	Low-spin sulfite reductases: a new homologous group of non-heme iron-siroheme proteins in anaerobic bacteria.	Moura I, Lino AR, Moura JJ, Xavier AV, Fauque G, Peck HD Jr, LeGall J	Biochem Biophys Res Commun	10.1016/s0006-291x(86)80148-6	1986
Enzymology	Purification, characterization and redox properties of hydrogenase from Methanosarcina barkeri (DSM 800).	Fauque G, Teixeira M, Moura I, Lespinat PA, Xavier AV, Der Vartanian DV, Peck HD Jr, Le Gall J, Moura JG	Eur J Biochem	10.1111/j.1432-1033.1984.tb08245.x	1984
Phylogeny	Amino acid sequence of a 3Fe:3S ferredoxin from the "archaebacterium" Methanosarcina barkeri (DSM 800).	Hausinger RP, Moura I, Moura JJ, Xavier AV, Santos MH, LeGall J, Howard JB	J Biol Chem	S0021-9258(19)45364-7	1982
Phylogeny	Loktanella maritima sp. nov. isolated from shallow marine sediments.	Tanaka N, Romanenko LA, Kurilenko VV, Svetashev VI, Kalinovskaya NI, Mikhailov VV.	Int J Syst Evol Microbiol	10.1099/ijs.0.061747-0	2014
	Methanomethylophilus alvi gen. nov., sp. nov., a Novel Hydrogenotrophic Methyl-Reducing Methanogenic Archaea of the Order Methanomassiliicoccales Isolated from the Human Gut and Proposal of the Novel Family Methanomethylophilaceae fam. nov.	Borrel G, Fadhlaoui K, Ben Hania W, Gaci N, Pehau-Arnaudet G, Chaudhary PP, Vandekerckove P, Ballet N, Alric M, O'Toole PW, Fardeau ML, Ollivier B, Brugere JF.	Microorganisms	10.3390/microorganisms11112794	2023
Phylogeny	Isolation and characterization of a novel methanogen Methanosarcina hadiensis sp. nov. from subsurface Boom Clay pore water.	Gimenez FJ, Peeters E, Honty M, Leys N, Mijnendonckx K.	Environ Microbiol	10.1111/1462-2920.70004	2024
Enzymology	Methanosarcina lacustris sp. nov., a new psychrotolerant methanogenic archaeon from anoxic lake sediments.	Simankova MV, Parshina SN, Tourova TP, Kolganova TV, Zehnder AJ, Nozhevnikova AN.	Syst Appl Microbiol	10.1078/0723-2020-00058	2001
Metabolism	Methanogenesis from methanol at low temperatures by a novel psychrophilic methanogen, "Methanolobus psychrophilus" sp. nov., prevalent in Zoige wetland of the Tibetan plateau.	Zhang G, Jiang N, Liu X, Dong X.	Appl Environ Microbiol	10.1128/aem.01146-08	2008
Phylogeny	Methanosarcina spelaei sp. nov., a methanogenic archaeon isolated from a floating biofilm of a subsurface sulphurous lake.	Ganzert L, Schirmack J, Alawi M, Mangelsdorf K, Sand W, Hillebrand-Voiculescu A, Wagner D	Int J Syst Evol Microbiol	10.1099/ijs.0.064956-0	2014

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#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Methanosarcina barkeri (DSM 800, ATCC 43569, JCM 10043)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000970025

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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