Methanolobus bombayensis (DSM 7082, MCM B706, OCM 438)

Name: Methanolobus bombayensis (DSM 7082, MCM B706, OCM 438)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7080

Type strain

Culture col. no. DSM 7082 MCM B706 OCM 438

NCBI tax ID(s) 38023

Special Collections DSMZ

History DSMZ <- D. R. Ranade, Agharkar Research Institute, Pune, India; MCM B706 <- P. C. Kadam {1990}

Links

Methanolobus bombayensis DSM 7082 is an anaerobe archaeon that was isolated from sea sediment.

anaerobe genome sequence 16S sequence Archaea

Name and taxonomic classification

SI-ID 48361

DSM 7082

@ref 20215

Last LPSN update 2026-05-29 08:26:33

Domain Archaea

Phylum Methanobacteriota

Class Methanosarcinia

Order Methanosarcinales

Family Methanosarcinaceae

Genus Methanolobus

Species Methanolobus bombayensis

Full scientific name Methanolobus bombayensis Kadam et al. 1994

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	93.293

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
2892	METHANOCOCCOIDES MEDIUM (DSMZ Medium 141c)		Medium recipe at MediaDive	Name: METHANOCOCCOIDES MEDIUM (DSMZ Medium 141c) Composition: NaHCO3 4.89237 g/l Trimethylammonium chloride 4.89237 g/l MgCl2 x 6 H2O 3.91389 g/l Yeast extract 1.95695 g/l Trypticase peptone 1.95695 g/l Na-acetate 0.978474 g/l Na2S x 9 H2O 0.489237 g/l L-Cysteine HCl x H2O 0.489237 g/l KCl 0.332681 g/l NH4Cl 0.244618 g/l K2HPO4 0.136986 g/l MgSO4 x 7 H2O 0.0293542 g/l Nitrilotriacetic acid 0.0146771 g/l NaCl 0.00978474 g/l MnSO4 x H2O 0.00489237 g/l Fe(NH4)2(SO4)2 x 6 H2O 0.00195695 g/l CoSO4 x 7 H2O 0.00176125 g/l ZnSO4 x 7 H2O 0.00176125 g/l CaCl2 x 2 H2O 0.000978474 g/l FeSO4 x 7 H2O 0.000978474 g/l Sodium resazurin 0.000489237 g/l NiCl2 x 6 H2O 0.000293542 g/l AlK(SO4)2 x 12 H2O 0.000195695 g/l CuSO4 x 5 H2O 9.78474e-05 g/l Pyridoxine hydrochloride 9.78474e-05 g/l H3BO3 9.78474e-05 g/l Na2MoO4 x 2 H2O 9.78474e-05 g/l (DL)-alpha-Lipoic acid 4.89237e-05 g/l Thiamine HCl 4.89237e-05 g/l Riboflavin 4.89237e-05 g/l Nicotinic acid 4.89237e-05 g/l Calcium D-(+)-pantothenate 4.89237e-05 g/l p-Aminobenzoic acid 4.89237e-05 g/l Biotin 1.95695e-05 g/l Folic acid 1.95695e-05 g/l Na2WO4 x 2 H2O 3.91389e-06 g/l Na2SeO3 x 5 H2O 2.93542e-06 g/l Vitamin B12 9.78474e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
2892	positive	growth	35

Physiology and metabolism

Oxygen tolerance

2892

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation	Confidence
125439		98.935

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
2892	sea sediment	Arabian Sea near Bombay	India	IND	Asia

Taxonmaps

69479

Global distribution of 16S sequence FR733684 (>99% sequence identity) for Methanolobus bombayensis from Microbeatlas

Aquatic Samples	36
Soil Samples	2
Animal Samples	0
Plant Samples	0
Total Samples	38

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
2892	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1787341v1 assembly for Methanolobus bombayensis DSM 7082	contig	GCA_017873415	38023.3	2913348608	38023	66.98

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
2892	Methanolobus bombayensis partial 16S rRNA gene, type strain DSM7082T	FR733684	1469		38023

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1787341v1 assembly for Methanolobus bombayensis DSM 7082
NCBI: GCA_017873415

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	79.01	no
125439	gram_stain	BacteriaNetⓘ	negative	93.29	no
125439	motility	BacteriaNetⓘ	no	79.17	no
125439	spore_formation	BacteriaNetⓘ	no	98.94	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Methanogenesis and Salt Tolerance Genes of a Novel Halophilic Methanosarcinaceae Metagenome-Assembled Genome from a Former Solar Saltern.	Bueno de Mesquita CP, Zhou J, Theroux SM, Tringe SG.	Genes (Basel)	10.3390/genes12101609	2021

References

#2892	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7082
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Methanolobus bombayensis (DSM 7082, MCM B706, OCM 438)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_017873415

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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