Name: Methanohalophilus portucalensis FDF-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7074

Type strain:

Species: Methanohalophilus portucalensis

Strain Designation: FDF-1

Culture col. no.: DSM 7471, OCM 59

Strain history: <- OCM <- I. M. Mathrani, University of California, School of Public Health, Los Angeles, USA; FDF-1

NCBI tax ID(s): 523843 (strain), 39664 (species)

SI-ID 48447

DSM 7471, ATCC BAA-912

Other strains from Methanohalophilus portucalensis

M. portucalensis SF1, DSM 3243, OCM 13
M. portucalensis Z-7404, DSM 5699
M. portucalensis Z-7302, DSM 5701
M. portucalensis Z-7401, DSM 5702
M. portucalensis Z-7405, DSM 5703

Section

Methanohalophilus portucalensis FDF-1 is an anaerobe, mesophilic archaeon that was isolated from sediment of a saltern.

anaerobe
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	"Methanomicrobia"
	Order	*Methanosarcinales*
	Family	*Methanosarcinaceae*
	Genus	*Methanohalophilus*
	Species	**Methanohalophilus portucalensis**
	Full Scientific Name (LPSN)	Methanohalophilus portucalensis Boone et al. 1993

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3173]

Culture medium

METHANOHALOPHILUS MEDIUM (DSMZ Medium 479)

[Ref.: #3173]

Culture medium growth

[Ref.: #3173]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3173]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3173]			growth	37 °C

[Ref.: #3173]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3173]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3173]	Sample type/isolated from	sediment of a saltern
[Ref.: #3173]	Geographic location (country and/or sea, region)	Figueira da Foz
[Ref.: #3173]	Country	Portugal
[Ref.: #3173]	Country ISO 3 Code	PRT
[Ref.: #3173]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Built environment	#Indoor
#Condition	#Saline	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3173]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3173]	Methanohalophilus portucalensis FDF-1 16S ribosomal RNA gene, partial sequence	AY290717	1208	ENA	523843 tax ID
[Ref.: #20218]	Enterococcus faecalis clone OCM059 16S ribosomal RNA gene, partial sequence	GU417240	457	ENA	1351 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methanohalophilus portucalensis FDF-1	523843.5	wgs	PATRIC	523843 tax ID	*
[Ref.: #66792]	Methanohalophilus portucalensis FDF-1 DSM 7471	GCA_003722115	contig	GenBank	523843 tax ID	*
[Ref.: #66792]	Methanohalophilus portucalensis FDF-1	GCA_001888095	scaffold	GenBank	523843 tax ID	*
[Ref.: #66792]	Methanohalophilus portucalensis FDF-1	2914860506	draft	JGI IMG/M	523843 tax ID	*
[Ref.: #66792]	Methanohalophilus portucalensis FDF-1	2706794887	draft	JGI IMG/M	523843 tax ID	*
[Ref.: #66792]	Methanohalophilus portucalensis FDF-1	2806310721	complete	JGI IMG/M	39664 tax ID	*

[Ref.: #3173]

GC-content

41.95 mol%

sequence analysis

Availability in culture collections External links

[Ref.: #3173]

Culture collection no.

DSM 7471, OCM 59

[Ref.: #76531]

SI-ID 48447

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequence of the Halophilic Methylotrophic Methanogen Archaeon Methanohalophilus portucalensis Strain FDF-1(T).	L'Haridon S, Corre E, Guan Y, Vinu M, La Cono V, Yakimov M, Stingl U, Toffin L, Jebbar M	Genome Announc	10.1128/genomeA.01482-17	2018	*
Phylogeny	Methanohalophilus levihalophilus sp. nov., a slightly halophilic, methylotrophic methanogen isolated from natural gas-bearing deep aquifers, and emended description of the genus Methanohalophilus.	Katayama T, Yoshioka H, Mochimaru H, Meng XY, Muramoto Y, Usami J, Ikeda H, Kamagata Y, Sakata S	Int J Syst Evol Microbiol	10.1099/ijs.0.063677-0	2014	*

References

#3173

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7471

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#76531

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48447.1 )

* These data were automatically processed and therefore are not curated

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