Methanococcoides burtonii (DSM 6242, NBRC 107633, ACE-M)

Name: Methanococcoides burtonii (DSM 6242, NBRC 107633, ACE-M)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 7060

Type strain

Strain Designation ACE-M

Culture col. no. DSM 6242 NBRC 107633 ACE-M

NCBI tax ID(s) 259564 29291

Special Collections DSMZ

History <- P. D. Franzmann, Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH; ACE-M <- P. D. Franzmann {1990}

Links

Methanococcoides burtonii ACE-M is an anaerobe archaeon that was isolated from lake water at 24 m depth.

anaerobe genome sequence 16S sequence Archaea

Name and taxonomic classification

SI-ID 48128

NBRC 107633,DSM 6242

@ref 20215

Last LPSN update 2026-02-09 11:19:22

Domain Archaea

Phylum Methanobacteriota

Class Methanosarcinia

Order Methanosarcinales

Family Methanosarcinaceae

Genus Methanococcoides

Species Methanococcoides burtonii

Full scientific name Methanococcoides burtonii Franzmann et al. 1993

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
2553	METHANOCOCCOIDES MEDIUM (DSMZ Medium 141c)		Medium recipe at MediaDive	Name: METHANOCOCCOIDES MEDIUM (DSMZ Medium 141c) Composition: NaHCO3 4.89237 g/l Trimethylammonium chloride 4.89237 g/l MgCl2 x 6 H2O 3.91389 g/l Yeast extract 1.95695 g/l Trypticase peptone 1.95695 g/l Na-acetate 0.978474 g/l Na2S x 9 H2O 0.489237 g/l L-Cysteine HCl x H2O 0.489237 g/l KCl 0.332681 g/l NH4Cl 0.244618 g/l K2HPO4 0.136986 g/l MgSO4 x 7 H2O 0.0293542 g/l Nitrilotriacetic acid 0.0146771 g/l NaCl 0.00978474 g/l MnSO4 x H2O 0.00489237 g/l Fe(NH4)2(SO4)2 x 6 H2O 0.00195695 g/l CoSO4 x 7 H2O 0.00176125 g/l ZnSO4 x 7 H2O 0.00176125 g/l CaCl2 x 2 H2O 0.000978474 g/l FeSO4 x 7 H2O 0.000978474 g/l Sodium resazurin 0.000489237 g/l NiCl2 x 6 H2O 0.000293542 g/l AlK(SO4)2 x 12 H2O 0.000195695 g/l CuSO4 x 5 H2O 9.78474e-05 g/l Pyridoxine hydrochloride 9.78474e-05 g/l H3BO3 9.78474e-05 g/l Na2MoO4 x 2 H2O 9.78474e-05 g/l (DL)-alpha-Lipoic acid 4.89237e-05 g/l Thiamine HCl 4.89237e-05 g/l Riboflavin 4.89237e-05 g/l Nicotinic acid 4.89237e-05 g/l Calcium D-(+)-pantothenate 4.89237e-05 g/l p-Aminobenzoic acid 4.89237e-05 g/l Biotin 1.95695e-05 g/l Folic acid 1.95695e-05 g/l Na2WO4 x 2 H2O 3.91389e-06 g/l Na2SeO3 x 5 H2O 2.93542e-06 g/l Vitamin B12 9.78474e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
2553	positive	growth	21

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
2553	anaerobe
125439	obligate anaerobe	93.4

Spore formation

@ref	Spore formation	Confidence
125439		99

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	coenzyme A metabolism	100	4 of 4
66794	ribulose monophosphate pathway	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	acetoin degradation	100	3 of 3
66794	ethanol fermentation	100	2 of 2
66794	d-mannose degradation	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	flavin biosynthesis	86.67	13 of 15
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	NAD metabolism	83.33	15 of 18
66794	factor 420 biosynthesis	80	4 of 5
66794	methanofuran biosynthesis	80	4 of 5
66794	methylglyoxal degradation	80	4 of 5
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	palmitate biosynthesis	77.27	17 of 22
66794	acetate fermentation	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	ppGpp biosynthesis	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	methanogenesis from CO2	75	9 of 12
66794	purine metabolism	74.47	70 of 94
66794	pyrimidine metabolism	73.33	33 of 45
66794	heme metabolism	71.43	10 of 14
66794	photosynthesis	71.43	10 of 14
66794	myo-inositol biosynthesis	70	7 of 10
66794	starch degradation	70	7 of 10
66794	phenylalanine metabolism	69.23	9 of 13
66794	vitamin B1 metabolism	69.23	9 of 13
66794	valine metabolism	66.67	6 of 9
66794	vitamin B12 metabolism	64.71	22 of 34
66794	glycolysis	64.71	11 of 17
66794	glutamate and glutamine metabolism	60.71	17 of 28
66794	cellulose degradation	60	3 of 5
66794	threonine metabolism	60	6 of 10
66794	hydrogen production	60	3 of 5
66794	glycogen metabolism	60	3 of 5
66794	coenzyme M biosynthesis	60	6 of 10
66794	tetrahydrofolate metabolism	57.14	8 of 14
66794	citric acid cycle	57.14	8 of 14
66794	serine metabolism	55.56	5 of 9
66794	nitrate assimilation	55.56	5 of 9
66794	proline metabolism	54.55	6 of 11
66794	arginine metabolism	54.17	13 of 24
66794	methionine metabolism	53.85	14 of 26
66794	histidine metabolism	51.72	15 of 29
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	isoprenoid biosynthesis	50	13 of 26
66794	tyrosine metabolism	50	7 of 14
66794	Entner Doudoroff pathway	50	5 of 10
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	phenylmercury acetate degradation	50	1 of 2
66794	alginate biosynthesis	50	2 of 4
66794	selenocysteine biosynthesis	50	3 of 6
66794	gluconeogenesis	50	4 of 8
66794	suberin monomers biosynthesis	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	denitrification	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	CDP-diacylglycerol biosynthesis	50	1 of 2
66794	cyclohexanol degradation	50	2 of 4
66794	biotin biosynthesis	50	2 of 4
66794	lipid metabolism	48.39	15 of 31
66794	non-pathway related	47.37	18 of 38
66794	oxidative phosphorylation	47.25	43 of 91
66794	peptidoglycan biosynthesis	46.67	7 of 15
66794	leucine metabolism	46.15	6 of 13
66794	urea cycle	46.15	6 of 13
66794	sulfate reduction	46.15	6 of 13
66794	lysine metabolism	45.24	19 of 42
66794	alanine metabolism	44.83	13 of 29
66794	CO2 fixation in Crenarchaeota	44.44	4 of 9
66794	cysteine metabolism	44.44	8 of 18
66794	propanol degradation	42.86	3 of 7
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	propionate fermentation	40	4 of 10
66794	lipoate biosynthesis	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	tryptophan metabolism	39.47	15 of 38
66794	degradation of hexoses	38.89	7 of 18
66794	phosphatidylethanolamine bioynthesis	38.46	5 of 13
66794	ketogluconate metabolism	37.5	3 of 8
66794	pentose phosphate pathway	36.36	4 of 11
66794	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
66794	polyamine pathway	34.78	8 of 23
66794	lipid A biosynthesis	33.33	3 of 9
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	L-lactaldehyde degradation	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	formaldehyde oxidation	33.33	1 of 3
66794	pantothenate biosynthesis	33.33	2 of 6
66794	octane oxidation	33.33	1 of 3
66794	chlorophyll metabolism	33.33	6 of 18
66794	degradation of pentoses	28.57	8 of 28
66794	mevalonate metabolism	28.57	2 of 7
66794	glutathione metabolism	28.57	4 of 14
66794	vitamin B6 metabolism	27.27	3 of 11
66794	vitamin E metabolism	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	carotenoid biosynthesis	22.73	5 of 22
66794	ascorbate metabolism	22.73	5 of 22

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Lake (large)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
2553	lake water at 24 m depth	Ace Lake	Antarctica	ATA	Australia and Oceania

Taxonmaps

69479

Global distribution of 16S sequence X65537 (>99% sequence identity) for Methanococcoides burtonii subclade from Microbeatlas

Aquatic Samples	101
Soil Samples
Animal Samples
Plant Samples	1
Total Samples	102

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
2553	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1372v1 assembly for Methanococcoides burtonii DSM 6242	complete	GCA_000013725	259564.15	637000161	259564	97.44

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	M.burtonii gene for 16S rRNA	X65537	1476		29291

GC content

@ref	GC-content (mol%)	Method
2553	39.6	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Methanococcoides burtonii DSM 6242
IMG: 637000161

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.00	no
125439	motility	BacteriaNetⓘ	no	75.10	no
125439	gram_stain	BacteriaNetⓘ	negative	99.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	93.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Methanococcoides burtonii DSM 6242 DSM 6242
NCBI: GCA_000013725.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	63.61	no
125438	anaerobic	anaerobicⓘ	yes	87.93	yes
125438	aerobic	aerobicⓘ	no	89.96	yes
125438	spore-forming	spore-formingⓘ	no	85.19	no
125438	thermophilic	thermophileⓘ	no	83.15	yes
125438	flagellated	motile2+ⓘ	no	84.05	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Organic matter degradation in the deep, sulfidic waters of the Black Sea: insights into the ecophysiology of novel anaerobic bacteria.	Yadav S, Koenen M, Bale NJ, Reitsma W, Engelmann JC, Stefanova K, Damste JSS, Villanueva L.	Microbiome	10.1186/s40168-024-01816-x	2024
	Casposons - silent heroes of the CRISPR-Cas systems evolutionary history.	Smaruj P, Kieliszek M.	EXCLI J	10.17179/excli2022-5581	2023
	Comparative Genomics of Methanopyrus sp. SNP6 and KOL6 Revealing Genomic Regions of Plasticity Implicated in Extremely Thermophilic Profiles.	Yu Z, Ma Y, Zhong W, Qiu J, Li J.	Front Microbiol	10.3389/fmicb.2017.01278	2017
Enzymology	A Reduced F₄₂₀-Dependent Nitrite Reductase in an Anaerobic Methanotrophic Archaeon.	Heryakusuma C, Susanti D, Yu H, Li Z, Purwantini E, Hettich RL, Orphan VJ, Mukhopadhyay B.	J Bacteriol	10.1128/jb.00078-22	2022
	Genome-resolved metagenomics and metatranscriptomics reveal niche differentiation in functionally redundant microbial communities at deep-sea hydrothermal vents.	Galambos D, Anderson RE, Reveillaud J, Huber JA.	Environ Microbiol	10.1111/1462-2920.14806	2019
Genetics	Horizontal gene transfer and genome evolution in Methanosarcina.	Garushyants SK, Kazanov MD, Gelfand MS.	BMC Evol Biol	10.1186/s12862-015-0393-2	2015
Metabolism	An intertwined evolutionary history of methanogenic archaea and sulfate reduction.	Susanti D, Mukhopadhyay B.	PLoS One	10.1371/journal.pone.0045313	2012
	Insertion sequence distribution bias in Archaea.	Florek MC, Gilbert DP, Plague GR.	Mob Genet Elements	10.4161/mge.27829	2014
	Distribution of dehalogenation activity in subseafloor sediments of the Nankai Trough subduction zone.	Futagami T, Morono Y, Terada T, Kaksonen AH, Inagaki F.	Philos Trans R Soc Lond B Biol Sci	10.1098/rstb.2012.0249	2013
Genetics	Comparative genomic analysis reveals the environmental impacts on two Arcticibacter strains including sixteen Sphingobacteriaceae species.	Shen L, Liu Y, Xu B, Wang N, Zhao H, Liu X, Liu F.	Sci Rep	10.1038/s41598-017-02191-4	2017
Metabolism	Casposons: a new superfamily of self-synthesizing DNA transposons at the origin of prokaryotic CRISPR-Cas immunity.	Krupovic M, Makarova KS, Forterre P, Prangishvili D, Koonin EV.	BMC Biol	10.1186/1741-7007-12-36	2014
	Gene order phylogeny and the evolution of methanogens.	Luo H, Sun Z, Arndt W, Shi J, Friedman R, Tang J.	PLoS One	10.1371/journal.pone.0006069	2009
	Algorithms of ancestral gene length reconstruction.	Bolshoy A, Kirzhner VM.	Biomed Res Int	10.1155/2013/472163	2013
	Recent Mobility of Casposons, Self-Synthesizing Transposons at the Origin of the CRISPR-Cas Immunity.	Krupovic M, Shmakov S, Makarova KS, Forterre P, Koonin EV.	Genome Biol Evol	10.1093/gbe/evw006	2016
Genetics	Metagenome reveals potential microbial degradation of hydrocarbon coupled with sulfate reduction in an oil-immersed chimney from Guaymas Basin.	He Y, Xiao X, Wang F.	Front Microbiol	10.3389/fmicb.2013.00148	2013
	Phylogeny and Taxonomy of Archaea: A Comparison of the Whole-Genome-Based CVTree Approach with 16S rRNA Sequence Analysis.	Zuo G, Xu Z, Hao B.	Life (Basel)	10.3390/life5010949	2015
Metabolism	Characterization of the biosynthetic pathway of glucosylglycerate in the archaeon Methanococcoides burtonii.	Costa J, Empadinhas N, Goncalves L, Lamosa P, Santos H, da Costa MS.	J Bacteriol	10.1128/jb.188.3.1022-1030.2006	2006
Metabolism	Influence of temperature on tRNA modification in archaea: Methanococcoides burtonii (optimum growth temperature [Topt], 23 degrees C) and Stetteria hydrogenophila (Topt, 95 degrees C).	Noon KR, Guymon R, Crain PF, McCloskey JA, Thomm M, Lim J, Cavicchioli R.	J Bacteriol	10.1128/jb.185.18.5483-5490.2003	2003
Genetics	Sequence evidence in the archaeal genomes that tRNAs emerged through the combination of ancestral genes as 5' and 3' tRNA halves.	Fujishima K, Sugahara J, Tomita M, Kanai A.	PLoS One	10.1371/journal.pone.0001622	2008
	Safety in numbers: multiple occurrences of highly similar homologs among Azotobacter vinelandii carbohydrate metabolism proteins probably confer adaptive benefits.	Maerk M, Johansen J, Ertesvag H, Drablos F, Valla S.	BMC Genomics	10.1186/1471-2164-15-192	2014
Metabolism	Structure of the surface layer of the methanogenic archaean Methanosarcina acetivorans.	Arbing MA, Chan S, Shin A, Phan T, Ahn CJ, Rohlin L, Gunsalus RP.	Proc Natl Acad Sci U S A	10.1073/pnas.1120595109	2012
Metabolism	Identification and characterization of an archaeon-specific riboflavin kinase.	Mashhadi Z, Zhang H, Xu H, White RH.	J Bacteriol	10.1128/jb.01900-07	2008
Genetics	Tracing lifestyle adaptation in prokaryotic genomes.	Altermann E.	Front Microbiol	10.3389/fmicb.2012.00048	2012
Metabolism	Archaeal ubiquitin-like proteins: functional versatility and putative ancestral involvement in tRNA modification revealed by comparative genomic analysis.	Makarova KS, Koonin EV.	Archaea	10.1155/2010/710303	2010
Metabolism	Archaeosortases and exosortases are widely distributed systems linking membrane transit with posttranslational modification.	Haft DH, Payne SH, Selengut JD.	J Bacteriol	10.1128/jb.06026-11	2012
Phylogeny	Integration of phenotypic metadata and protein similarity in Archaea using a spectral bipartitioning approach.	Hooper SD, Anderson IJ, Pati A, Dalevi D, Mavromatis K, Kyrpides NC.	Nucleic Acids Res	10.1093/nar/gkp075	2009
Enzymology	Diversity of the DNA replication system in the Archaea domain.	Sarmiento F, Long F, Cann I, Whitman WB.	Archaea	10.1155/2014/675946	2014
Metabolism	Use of a phosphonate methyltransferase in the identification of the fosfazinomycin biosynthetic gene cluster.	Gao J, Ju KS, Yu X, Velasquez JE, Mukherjee S, Lee J, Zhao C, Evans BS, Doroghazi JR, Metcalf WW, van der Donk WA.	Angew Chem Int Ed Engl	10.1002/anie.201308363	2014
Phylogeny	Metagenomic analysis of stress genes in microbial mat communities from Antarctica and the High Arctic.	Varin T, Lovejoy C, Jungblut AD, Vincent WF, Corbeil J.	Appl Environ Microbiol	10.1128/aem.06354-11	2012
Phylogeny	Streamlining and large ancestral genomes in Archaea inferred with a phylogenetic birth-and-death model.	Csuros M, Miklos I.	Mol Biol Evol	10.1093/molbev/msp123	2009
Metabolism	Simple sequence repeats in prokaryotic genomes.	Mrazek J, Guo X, Shah A.	Proc Natl Acad Sci U S A	10.1073/pnas.0702412104	2007
	Genomic and Biochemical Analysis of the Diaminopimelate and Lysine Biosynthesis Pathway in Verrucomicrobium spinosum: Identification and Partial Characterization of L,L-Diaminopimelate Aminotransferase and UDP-N-Acetylmuramoylalanyl-D-glutamyl-2,6-meso-Diaminopimelate Ligase.	Nachar VR, Savka FC, McGroty SE, Donovan KA, North RA, Dobson RC, Buckley LJ, Hudson AO.	Front Microbiol	10.3389/fmicb.2012.00183	2012
Phylogeny	The dispersed archaeal eukaryome and the complex archaeal ancestor of eukaryotes.	Koonin EV, Yutin N.	Cold Spring Harb Perspect Biol	10.1101/cshperspect.a016188	2014
Genetics	Identification and genomic analysis of transcription factors in archaeal genomes exemplifies their functional architecture and evolutionary origin.	Perez-Rueda E, Janga SC.	Mol Biol Evol	10.1093/molbev/msq033	2010
Metabolism	Methanosarcina acetivorans C2A topoisomerase IIIalpha, an archaeal enzyme with promiscuity in divalent cation dependence.	Morales R, Sriratana P, Zhang J, Cann IK.	PLoS One	10.1371/journal.pone.0026903	2011
Metabolism	Phylogenomic analysis of proteins that are distinctive of Archaea and its main subgroups and the origin of methanogenesis.	Gao B, Gupta RS.	BMC Genomics	10.1186/1471-2164-8-86	2007
	Oxygen and hydrogen peroxide in the early evolution of life on earth: in silico comparative analysis of biochemical pathways.	Slesak I, Slesak H, Kruk J.	Astrobiology	10.1089/ast.2011.0704	2012
Phylogeny	Whole-genome based Archaea phylogeny and taxonomy: A composition vector approach.	Sun J, Xu Z, Hao B.	Chin Sci Bull	10.1007/s11434-010-3008-8	2010
	An ancient family of SelB elongation factor-like proteins with a broad but disjunct distribution across archaea.	Atkinson GC, Hauryliuk V, Tenson T.	BMC Evol Biol	10.1186/1471-2148-11-22	2011
Metabolism	Long-term succession in a coal seam microbiome during in situ biostimulation of coalbed-methane generation.	Beckmann S, Luk AWS, Gutierrez-Zamora ML, Chong NHH, Thomas T, Lee M, Manefield M.	ISME J	10.1038/s41396-018-0296-5	2019
	Distribution, structure and diversity of "bacterial" genes encoding two-component proteins in the Euryarchaeota.	Ashby MK.	Archaea	10.1155/2006/562404	2006
Genetics	Alkane hydroxylase genes in psychrophile genomes and the potential for cold active catalysis.	Bowman JS, Deming JW.	BMC Genomics	10.1186/1471-2164-15-1120	2014
Metabolism	Characterization of a novel bifunctional dihydropteroate synthase/dihydropteroate reductase enzyme from Helicobacter pylori.	Levin I, Mevarech M, Palfey BA.	J Bacteriol	10.1128/jb.01878-06	2007
Metabolism	Effects of ribosomes and intracellular solutes on activities and stabilities of elongation factor 2 proteins from psychrotolerant and thermophilic methanogens.	Thomas T, Kumar N, Cavicchioli R.	J Bacteriol	10.1128/jb.183.6.1974-1982.2001	2001
Genetics	The GC skew index: a measure of genomic compositional asymmetry and the degree of replicational selection.	Arakawa K, Tomita M.	Evol Bioinform Online		2007
Metabolism	Phylogenomic reconstruction of archaeal fatty acid metabolism.	Dibrova DV, Galperin MY, Mulkidjanian AY.	Environ Microbiol	10.1111/1462-2920.12359	2014
	Noncellulosomal cohesin- and dockerin-like modules in the three domains of life.	Peer A, Smith SP, Bayer EA, Lamed R, Borovok I.	FEMS Microbiol Lett	10.1111/j.1574-6968.2008.01420.x	2009
Enzymology	Modelling the evolution of the archeal tryptophan synthase.	Merkl R.	BMC Evol Biol	10.1186/1471-2148-7-59	2007
Enzymology	The archaeon Methanosarcina acetivorans contains a protein disulfide reductase with an iron-sulfur cluster.	Lessner DJ, Ferry JG.	J Bacteriol	10.1128/jb.00891-07	2007
Metabolism	A novel pathway for the biosynthesis of heme in Archaea: genome-based bioinformatic predictions and experimental evidence.	Storbeck S, Rolfes S, Raux-Deery E, Warren MJ, Jahn D, Layer G.	Archaea	10.1155/2010/175050	2010
Genetics	Phylogenetic and gene-centric metagenomics of the canine intestinal microbiome reveals similarities with humans and mice.	Swanson KS, Dowd SE, Suchodolski JS, Middelbos IS, Vester BM, Barry KA, Nelson KE, Torralba M, Henrissat B, Coutinho PM, Cann IK, White BA, Fahey GC.	ISME J	10.1038/ismej.2010.162	2011
Genetics	Information theoretic perspective on genome clustering.	Veluchamy A, Mehta P, Srividhya KV, Vikram H, Govind MK, Gupta R, Aziz Bin Dukhyil A, Abdullah Alharbi R, Abdullah Aloyuni S, Hassan MM, Krishnaswamy S.	Saudi J Biol Sci	10.1016/j.sjbs.2020.12.039	2021
	A single-copy IS5-like transposon in the genome of a bdelloid rotifer.	Gladyshev EA, Arkhipova IR.	Mol Biol Evol	10.1093/molbev/msp104	2009
	Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms.	Nasir A, Naeem A, Khan MJ, Nicora HD, Caetano-Anolles G.	Genes (Basel)	10.3390/genes2040869	2011
	A study in entire chromosomes of violations of the intra-strand parity of complementary nucleotides (Chargaff's second parity rule).	Powdel BR, Satapathy SS, Kumar A, Jha PK, Buragohain AK, Borah M, Ray SK.	DNA Res	10.1093/dnares/dsp021	2009
Genetics	Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea.	Makarova KS, Sorokin AV, Novichkov PS, Wolf YI, Koonin EV.	Biol Direct	10.1186/1745-6150-2-33	2007
Metabolism	Recombinant production, crystallization and preliminary X-ray analysis of PCNA from the psychrophilic archaeon Methanococcoides burtonii DSM 6242.	Byrne-Steele ML, Hughes RC, Ng JD	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/S1744309109037075	2009
Stress	Analysis of the AAA+ chaperone clpB gene and stress-response expression in the halophilic methanogenic archaeon Methanohalophilus portucalensis.	Shih CJ, Lai MC	Microbiology (Reading)	10.1099/mic.0.2007/007633-0	2007
Phylogeny	Isolation of a methanogen from deep marine sediments that contain methane hydrates, and description of Methanoculleus submarinus sp. nov.	Mikucki JA, Liu Y, Delwiche M, Colwell FS, Boone DR.	Appl Environ Microbiol	10.1128/aem.69.6.3311-3316.2003	2003
Phylogeny	Methanococcoides orientis sp. nov., a methylotrophic methanogen isolated from sediment of the East China Sea.	Liang L, Sun Y, Dong Y, Ahmad T, Chen Y, Wang J, Wang F	Int J Syst Evol Microbiol	10.1099/ijsem.0.005384	2022
Phylogeny	Methanococcoides vulcani sp. nov., a marine methylotrophic methanogen that uses betaine, choline and N,N-dimethylethanolamine for methanogenesis, isolated from a mud volcano, and emended description of the genus Methanococcoides.	L'Haridon S, Chalopin M, Colombo D, Toffin L	Int J Syst Evol Microbiol	10.1099/ijs.0.058289-0	2014

References

#2553	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6242
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Methanococcoides burtonii (DSM 6242, NBRC 107633, ACE-M)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000013725

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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