Name: Methanimicrococcus blatticola PA
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7057

Type strain:

Species: Methanimicrococcus blatticola

Strain Designation: PA

Culture col. no.: DSM 13328, ATCC BAA-276, JCM 31471

Strain history: DSM 13328 <-- J. T. Keltjens; Univ. of Nijmegen, Netherlands; PA.

NCBI tax ID(s): 91560 (species)

SI-ID 49457

DSM 13328, ATCC BAA-276

Section

Methanimicrococcus blatticola PA is an anaerobe, mesophilic, Gram-negative archaeon that was isolated from hindgut of the American cockroach Periplaneta americana.

Gram-negative
anaerobe
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	"Methanomicrobia"
	Order	*Methanosarcinales*
	Family	*Methanosarcinaceae*
	Genus	*Methanimicrococcus*
	Species	**Methanimicrococcus blatticola**
	Full Scientific Name (LPSN)	Methanimicrococcus blatticola corrig. Sprenger et al. 2000

Synonym

Methanomicrococcus blatticola

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.879

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4997]

Culture medium

METHANOMICROCOCCUS MEDIUM (DSMZ Medium 120b)

[Ref.: #4997]

Culture medium growth

[Ref.: #4997]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4997]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4997]			growth	35 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #4997]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4997]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.02

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.956

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4997]	Sample type/isolated from	hindgut of the American cockroach Periplaneta americana
[Ref.: #4997]	Host species	Periplaneta americana
[Ref.: #4997]	Country	Netherlands
[Ref.: #4997]	Country ISO 3 Code	NLD
[Ref.: #4997]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Hindgut of the cockroach Periplaneta americana
[Ref.: #67770]	Host species	Periplaneta americana
* marker position based on {}

Isolation sources categories

#Host	#Arthropoda	#Insecta
#Host Body-Site	#Gastrointestinal tract	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ238002 (>99% sequence identity) for Methanimicrococcus from Microbeatlas

Aquatic Samples	8
Soil Samples	2
Animal Samples	26
Plant Samples	11
Total Samples	47

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4997]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4997]	Methanomicrococcus blatticolus 16S rRNA gene	AJ238002	1453	ENA	91560 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Methanimicrococcus blatticola DSM 13328	GCA_004363215	scaffold	GenBank	91560 tax ID
[Ref.: #66792]	Methanimicrococcus blatticola PA	GCA_020685265	scaffold	GenBank	91560 tax ID	*
[Ref.: #66792]	Methanimicrococcus blatticola DSM 13328	GCA_020011555	contig	GenBank	91560 tax ID	*
[Ref.: #66792]	Methanimicrococcus blatticola PA	2698536704	draft	JGI IMG/M	91560 tax ID	*
[Ref.: #66792]	Methanimicrococcus blatticola DSM 13328	2756170388	draft	JGI IMG/M	91560 tax ID	*
[Ref.: #66792]	Methanimicrococcus blatticola strain DSM 13328	91560.10	wgs	PATRIC	91560 tax ID	*

[Ref.: #4997]

GC-content

55 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Methanimicrococcus blatticola DSM 13328 NCBI: GCA_004363215.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methanimicrococcus blatticola PA NCBI: GCA_020685265.1
[Ref.: #69480]	flagellated	no	96.481	no
[Ref.: #69480]	gram-positive	no	92.829	no
[Ref.: #69480]	anaerobic	yes	98.453	yes
[Ref.: #69480]	aerobic	no	96.049	yes
[Ref.: #69480]	halophile	no	75.981	no
[Ref.: #69480]	spore-forming	no	97.271	no
[Ref.: #69480]	motile	no	92.062	no
[Ref.: #69480]	thermophile	no	97.739	yes
[Ref.: #69480]	glucose-util	yes	73.912	no
[Ref.: #69480]	glucose-ferment	no	50	no

Availability in culture collections External links

[Ref.: #4997]

Culture collection no.

DSM 13328, ATCC BAA-276, JCM 31471

[Ref.: #76514]

SI-ID 49457

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Methanomicrococcus blatticola gen. nov., sp. nov., a methanol- and methylamine-reducing methanogen from the hindgut of the cockroach Periplaneta americana.	Sprenger WW, van Belzen MC, Rosenberg J, Hackstein JH, Keltjens JT	Int J Syst Evol Microbiol	10.1099/00207713-50-6-1989	2000	*

References

#4997

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13328

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76514

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49457.1 )

* These data were automatically processed and therefore are not curated

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Methanimicrococcus blatticola DSM 13328

Methanimicrococcus blatticola PA

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