Name: Methanoplanus endosymbiosus MC1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7041

Type strain:

Species: Methanoplanus endosymbiosus

Strain Designation: MC1

Culture col. no.: DSM 3599, OCM 102

Strain history: <- G.D. Vogels, MC1

NCBI tax ID(s): 33865 (species)

SI-ID 47732

DSM 3599

Section

Methanoplanus endosymbiosus MC1 is an anaerobe, mesophilic archaeon that was isolated from from marine ciliate Metopus contortus.

anaerobe
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	"Methanomicrobia"
	Order	*Methanomicrobiales*
	Family	*Methanomicrobiaceae*
	Genus	*Methanoplanus*
	Species	**Methanoplanus endosymbiosus**
	Full Scientific Name (LPSN)	Methanoplanus endosymbiosus van Bruggen et al. 1986

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1421]

Culture medium

METHANOGENIUM MEDIUM (H2/CO2) (DSMZ Medium 141)

[Ref.: #1421]

Culture medium growth

[Ref.: #1421]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1421]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1421]			growth	30 °C

[Ref.: #1421]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1421]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1421]	Sample type/isolated from	from marine ciliate Metopus contortus
[Ref.: #1421]	Host species	Metopus contortus
[Ref.: #1421]	Geographic location (country and/or sea, region)	Country of origin unknown, Wadden Sea
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Protozoa	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR733674 (>99% sequence identity) for Methanoplanus from Microbeatlas

Aquatic Samples	153
Soil Samples	31
Animal Samples	1
Plant Samples	4
Total Samples	189

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1421]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1421]	Methanoplanus endosymbiosus partial 16S rRNA gene, type strain DSM3599T	FR733674	1464	ENA	33865 tax ID
[Ref.: #20218]	Methanoplanus endosymbiosus gene for 16S ribosomal RNA, partial sequence, strain: DSM 3599	AB370248	1399	ENA	33865 tax ID	*
[Ref.: #20218]	M.endosymbiosus (DSM 3599) mRNA for 16S ribosomal RNA	Z29435	949	ENA	33865 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methanoplanus endosymbiosus DSM 3599	GCA_024662215	complete	GenBank	33865 tax ID	*

[Ref.: #1421]

GC-content

38.7 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methanoplanus endosymbiosus DSM 3599 NCBI: GCA_024662215.1
[Ref.: #69480]	flagellated	no	96.976	no
[Ref.: #69480]	gram-positive	no	96.767	no
[Ref.: #69480]	anaerobic	yes	99.282	yes
[Ref.: #69480]	aerobic	no	97.233	yes
[Ref.: #69480]	halophile	no	84.743	no
[Ref.: #69480]	spore-forming	no	93.805	no
[Ref.: #69480]	glucose-ferment	no	57.146	no
[Ref.: #69480]	thermophile	no	93.97	yes
[Ref.: #69480]	glucose-util	yes	74.506	no
[Ref.: #69480]	motile	no	91.335	no

Availability in culture collections External links

[Ref.: #1421]

Culture collection no.

DSM 3599, OCM 102

[Ref.: #76500]

SI-ID 47732

References

#1421

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3599

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#76500

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID47732.1 )

* These data were automatically processed and therefore are not curated

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Methanoplanus endosymbiosus DSM 3599

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