Name: Methanogenium cariaci JR1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 7032

Type strain:

Species: Methanogenium cariaci

Strain Designation: JR1

Culture col. no.: DSM 1497, ATCC 35093, JCM 10550, OCM 155

Strain history: DSM 1497 <-- W. E. Balch <-- R. S. Wolfe and J. A. Romesser JR1.

NCBI tax ID(s): 1293041 (strain), 2197 (species)

SI-ID 40869

ATCC 35093, DSM 1497, JCM 10550

Section

Methanogenium cariaci JR1 is an anaerobe, psychrophilic archaeon that was isolated from marine sediment.

anaerobe
psychrophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	"Methanomicrobia"
	Order	*Methanomicrobiales*
	Family	*Methanomicrobiaceae*
	Genus	*Methanogenium*
	Species	**Methanogenium cariaci**
	Full Scientific Name (LPSN)	Methanogenium cariaci Romesser et al. 1981

Information on culture and growth conditions Culture and growth conditions

[Ref.: #794]

Culture medium

METHANOGENIUM MEDIUM (H2/CO2) (DSMZ Medium 141)

[Ref.: #794]

Culture medium growth

[Ref.: #794]

Culture medium link

Medium recipe at MediaDive

[Ref.: #794]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #794]			growth	21 °C
[Ref.: #67770]			growth	25 °C

[Ref.: #794]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #794]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #794]	Sample type/isolated from	marine sediment
[Ref.: #794]	Geographic location (country and/or sea, region)	Cariaco Trench
[Ref.: #794]	Country	Venezuela
[Ref.: #794]	Country ISO 3 Code	VEN
[Ref.: #794]	Continent	Middle and South America

[Ref.: #67770]	Sample type/isolated from	Sediment
[Ref.: #67770]	Geographic location (country and/or sea, region)	Cariaco Trench
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR733663 (>99% sequence identity) for Methanogenium cariaci subclade from Microbeatlas

Aquatic Samples	53
Soil Samples	4
Animal Samples
Plant Samples
Total Samples	57

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #794]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #794]	Methanogenium cariaci partial 16S rRNA gene, type strain DSM1497T	FR733663	1460	ENA	2197 tax ID
[Ref.: #20218]	Methanogenium cariaci 16S ribosomal RNA	M59130	1468	ENA	2197 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Methanogenium cariaci JCM 10550	GCA_001315945	contig	GenBank	1293041 tax ID
[Ref.: #66792]	Methanogenium cariaci JCM 10550	2681813007	draft	JGI IMG/M	1293041 tax ID	*
[Ref.: #66792]	Methanogenium cariaci JCM 10550	1293041.6	wgs	PATRIC	1293041 tax ID	*

[Ref.: #794]	GC-content	51.6 mol%
[Ref.: #67770]	GC-content	51.6 mol%	Buoyant density centrifugation (BD)

Availability in culture collections External links

[Ref.: #794]

Culture collection no.

DSM 1497, ATCC 35093, JCM 10550, OCM 155

[Ref.: #76492]

SI-ID 40869

References

#794	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1497

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#76492

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID40869.1 )

* These data were automatically processed and therefore are not curated

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