Methanococcus vannielii (DSM 1224, ATCC 35089, JCM 13029)

Name: Methanococcus vannielii (DSM 1224, ATCC 35089, JCM 13029)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6993

Type strain

Strain Designation SB

Culture col. no. DSM 1224 ATCC 35089 JCM 13029 SB OCM 148

NCBI tax ID(s) 2187

Special Collections DSMZ JCM

History <- T. C. Stadtman, University of California, Berkeley, USA; SB <- T. C. Stadtman and H. A. Barker DSM 1224 <-- T. C. Stadtman strain SB.

Links

Methanococcus vannielii SB is an anaerobe archaeon that was isolated from marine mud.

anaerobe genome sequence 16S sequence Archaea

Name and taxonomic classification

SI-ID 44994

ATCC 35089,DSM 1224,JCM 13029

@ref 20215

Last LPSN update 2026-02-09 11:19:22

Domain Archaea

Phylum Methanobacteriota

Class Methanococci

Order Methanococcales

Family Methanococcaceae

Genus Methanococcus

Species Methanococcus vannielii

Full scientific name Methanococcus vannielii Stadtman and Barker 1951 (Approved Lists 1980)

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.8

Colony morphology

588

Incubation period2-3 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
588	METHANOGENIUM MEDIUM (H2/CO2) (DSMZ Medium 141)		Medium recipe at MediaDive	Name: METHANOGENIUM MEDIUM (H2/CO2) (DSMZ Medium 141) Composition: NaHCO3 4.89237 g/l MgCl2 x 6 H2O 3.91389 g/l Yeast extract 1.95695 g/l Trypticase peptone 1.95695 g/l Na-acetate 0.978474 g/l Na2S x 9 H2O 0.489237 g/l L-Cysteine HCl x H2O 0.489237 g/l KCl 0.332681 g/l NH4Cl 0.244618 g/l K2HPO4 0.136986 g/l MgSO4 x 7 H2O 0.0293542 g/l Nitrilotriacetic acid 0.0146771 g/l NaCl 0.00978474 g/l MnSO4 x H2O 0.00489237 g/l Fe(NH4)2(SO4)2 x 6 H2O 0.00195695 g/l CoSO4 x 7 H2O 0.00176125 g/l ZnSO4 x 7 H2O 0.00176125 g/l FeSO4 x 7 H2O 0.000978474 g/l CaCl2 x 2 H2O 0.000978474 g/l Sodium resazurin 0.000489237 g/l NiCl2 x 6 H2O 0.000293542 g/l AlK(SO4)2 x 12 H2O 0.000195695 g/l CuSO4 x 5 H2O 9.78474e-05 g/l Pyridoxine hydrochloride 9.78474e-05 g/l Na2MoO4 x 2 H2O 9.78474e-05 g/l H3BO3 9.78474e-05 g/l Nicotinic acid 4.89237e-05 g/l Riboflavin 4.89237e-05 g/l (DL)-alpha-Lipoic acid 4.89237e-05 g/l Thiamine HCl 4.89237e-05 g/l Calcium D-(+)-pantothenate 4.89237e-05 g/l p-Aminobenzoic acid 4.89237e-05 g/l Folic acid 1.95695e-05 g/l Biotin 1.95695e-05 g/l Na2WO4 x 2 H2O 3.91389e-06 g/l Na2SeO3 x 5 H2O 2.93542e-06 g/l Vitamin B12 9.78474e-07 g/l Distilled water
588	METHANOBACTERIUM MEDIUM (DSMZ Medium 119)		Medium recipe at MediaDive	Name: METHANOBACTERIUM MEDIUM (DSMZ Medium 119) Composition: NaHCO3 3.98804 g/l Na-formate 1.99402 g/l Na-acetate 0.997009 g/l Na2S x 9 H2O 0.498504 g/l L-Cysteine HCl x H2O 0.498504 g/l KH2PO4 0.498504 g/l NH4Cl 0.398804 g/l NaCl 0.398804 g/l MgSO4 x 7 H2O 0.398804 g/l Yeast extract 0.199402 g/l CaCl2 x 2 H2O 0.0498504 g/l HCl 0.00249252 g/l FeSO4 x 7 H2O 0.00199402 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l H3BO3 5.98205e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Isobutyric acid DL-2-Methylbutyric acid Valeric acid Isovaleric acid H2SO4 Sludge Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
588	positive	growth	35
67770	positive	growth	35

Physiology and metabolism

Oxygen tolerance

588

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation	Confidence
125439		92.2

Compound production

@ref	Compound
588	formate dehydrogenase
588	restriction endonuclease MvnI

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Aquatic	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
588	marine mud	San Francisco Bay	USA	USA	North America
67770	Black mud from the east shore of San Francisco Bay

Taxonmaps

69479

Global distribution of 16S sequence NR_074175 (>99% sequence identity) for Methanococcus vannielii subclade from Microbeatlas

Aquatic Samples	101
Soil Samples	3
Animal Samples	2
Plant Samples
Total Samples	106

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
588	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1716v1 assembly for Methanococcus vannielii SB	complete	GCA_000017165	406327.12	640753036	406327	99.5

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
588	Methanococcus vannielii strain SB 16S ribosomal RNA, complete sequence	NR_074175	1465		2187
67770	Methanococcus vannielii 16S ribosomal RNA gene, partial sequence	AY196675	1257		2187

GC content

@ref	GC-content (mol%)	Method
588	31.3	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Methanococcus vannielii SB
NCBI: GCA_000017165

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	92.20	no
125439	motility	BacteriaNetⓘ	no	65.50	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	89.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Methanococcus vannielii SB SB
NCBI: GCA_000017165.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	61.87	no
125438	anaerobic	anaerobicⓘ	yes	88.39	no
125438	aerobic	aerobicⓘ	no	91.37	yes
125438	spore-forming	spore-formingⓘ	no	88.07	no
125438	thermophilic	thermophileⓘ	no	65.19	no
125438	flagellated	motile2+ⓘ	no	82.88	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Phenyl Acid Induced Inhibition of Methanogenesis in CO₂ Reducing Organisms.	Wunderer M, Unterkircher M, Schmidhofer A, Prem EM, Wagner AO.	Environ Microbiol Rep	10.1111/1758-2229.70082	2025
	Shaken not stirred - effect of different mixing modes during the cultivation of methanogenic pure cultures.	Mullaymeri A, Payr M, Wunderer M, Eva Maria EM, Wagner AO.	Curr Res Microb Sci	10.1016/j.crmicr.2025.100386	2025
Metabolism	The hydrogen threshold of obligately methyl-reducing methanogens.	Feldewert C, Lang K, Brune A.	FEMS Microbiol Lett	10.1093/femsle/fnaa137	2020
Metabolism	Discovery of multiple modified F(430) coenzymes in methanogens and anaerobic methanotrophic archaea suggests possible new roles for F(430) in nature.	Allen KD, Wegener G, White RH.	Appl Environ Microbiol	10.1128/aem.02202-14	2014
Metabolism	Post-transcriptional modification in archaeal tRNAs: identities and phylogenetic relations of nucleotides from mesophilic and hyperthermophilic Methanococcales.	McCloskey JA, Graham DE, Zhou S, Crain PF, Ibba M, Konisky J, Soll D, Olsen GJ.	Nucleic Acids Res	10.1093/nar/29.22.4699	2001
	Structure, organization and evolution of the L1 equivalent ribosomal protein gene of the archaebacterium Methanococcus vannielii.	Baier G, Piendl W, Redl B, Stoffler G.	Nucleic Acids Res	10.1093/nar/18.4.719	1990
	Fibrillarin-like proteins occur in the domain Archaea.	Amiri KA.	J Bacteriol	10.1128/jb.176.7.2124-2127.1994	1994
	[H]thymidine incorporation to estimate growth rates of anaerobic bacterial strains.	Winding A.	Appl Environ Microbiol	10.1128/aem.58.8.2660-2662.1992	1992
Pathogenicity	Unique antibiotic sensitivity of archaebacterial polypeptide elongation factors.	Londei P, Sanz JL, Altamura S, Hummel H, Cammarano P, Amils R, Bock A, Wolf H.	J Bacteriol	10.1128/jb.167.1.265-271.1986	1986
	Isolation and characterization of a novel thermophilic, freshwater methanogen.	Harris JE, Pinn PA, Davis RP.	Appl Environ Microbiol	10.1128/aem.48.6.1123-1128.1984	1984
	Immunological comparison of ribosomal proteins from archaebacteria.	Schmid G, Bock A.	J Bacteriol	10.1128/jb.147.2.282-288.1981	1981
	An improved enzyme-linked immunosorbent assay for whole-cell determination of methanogens in samples from anaerobic reactors.	Sorensen AH, Ahring BK.	Appl Environ Microbiol	10.1128/aem.63.5.2001-2006.1997	1997
	Yeast omnipotent supressor SUP1 (SUP45): nucleotide sequence of the wildtype and a mutant gene.	Breining P, Piepersberg W.	Nucleic Acids Res	10.1093/nar/14.13.5187	1986
	Specificity and biological distribution of coenzyme M (2-mercaptoethanesulfonic acid).	Balch WE, Wolfe RS.	J Bacteriol	10.1128/jb.137.1.256-263.1979	1979
	Detection and quantitation of methanogens by enzyme-linked immunosorbent assay.	Archer DB.	Appl Environ Microbiol	10.1128/aem.48.4.797-801.1984	1984
Phylogeny	Methanogens: reevaluation of a unique biological group.	Balch WE, Fox GE, Magrum LJ, Woese CR, Wolfe RS.	Microbiol Rev	10.1128/mr.43.2.260-296.1979	1979
Metabolism	Utilization of purines or pyrimidines as the sole nitrogen source by Methanococcus vannielii.	DeMoll E, Tsai L.	J Bacteriol	10.1128/jb.167.2.681-684.1986	1986
Phylogeny	The Pfam protein families database.	Punta M, Coggill PC, Eberhardt RY, Mistry J, Tate J, Boursnell C, Pang N, Forslund K, Ceric G, Clements J, Heger A, Holm L, Sonnhammer EL, Eddy SR, Bateman A, Finn RD.	Nucleic Acids Res	10.1093/nar/gkr1065	2012
	Crystal structures and RNA-binding properties of Lsm proteins from archaea Sulfolobus acidocaldarius and Methanococcus vannielii: Similarity and difference of the U-binding mode.	Lekontseva N, Mikhailina A, Fando M, Kravchenko O, Balobanov V, Tishchenko S, Nikulin A.	Biochimie	10.1016/j.biochi.2020.05.001	2020
	Prickly Ash Seeds Improve the Ruminal Epithelial Development and Growth Performance of Hu Sheep by Modulating the Rumen Microbiota and Metabolome	Li Q, Wu Y, Qi X, Liu Z, Wang C, Ma X, Ma Y.	Microorganisms		2024
	The inclusion of insect meal from Hermetia illucens larvae in the diet of laying hens (Hy-line Brown) affects the caecal diversity of methanogenic archaea.	Mahayri TM, Mrazek J, Bovera F, Piccolo G, Murgia GA, Moniello G, Fliegerova KO.	Poult Sci	10.1016/j.psj.2025.105037	2025
Metabolism	Performance of different methanogenic species for the microbial electrosynthesis of methane from carbon dioxide.	Mayer F, Enzmann F, Lopez AM, Holtmann D.	Bioresour Technol	10.1016/j.biortech.2019.121706	2019
	Effects of CO₂ and H₂ limitations on Methanococcus maripaludis.	Xue J, Deutzmann JS, Matis N, Kracke F, Spormann A, Gu W.	Microbiol Spectr	10.1128/spectrum.00359-25	2025
	Biosynthesis of geranate via isopentenol utilization pathway in Escherichia coli.	Pan Q, Ma X, Liang H, Liu Y, Zhou Y, Stephanopoulos G, Zhou K.	Biotechnol Bioeng	10.1002/bit.28255	2023
	Correlation of distribution characteristics and dynamic changes of gut microbiota with the efficacy of immunotherapy in EGFR-mutated non-small cell lung cancer.	Luo WC, Mei SQ, Huang ZJ, Chen ZH, Zhang YC, Yang MY, Liu JQ, Xu JY, Yang XR, Zhong RW, Tang LB, Yin LX, Deng Y, Peng YL, Lu C, Chen BL, Ke DX, Tu HY, Yang JJ, Xu CR, Wu YL, Zhou Q.	J Transl Med	10.1186/s12967-024-05135-5	2024
Genetics	Enhanced Electron Uptake and Methane Production by Corrosive Methanogens during Electromethanogenesis.	Mayer F, Sabel-Becker B, Holtmann D.	Microorganisms	10.3390/microorganisms10112237	2022
Biotechnology	Markerless mutagenesis enables isoleucine biosynthesis solely from threonine in Methanothermobacter marburgensis.	Klein M, Hilts AS, Fennessy RT, Trattnig N, Stehrer-Polasek T, Rittmann SK-MR, Fink C.	Microbiol Spectr	10.1128/spectrum.03068-24	2025
	Optimizing Archaeal Lipid Biosynthesis in Escherichia coli.	Hoekzema M, Jiang J, Driessen AJM.	ACS Synth Biol	10.1021/acssynbio.4c00235	2024
	The Molecular Determinants of Thermoadaptation: Methanococcales as a Case Study.	Lecocq M, Groussin M, Gouy M, Brochier-Armanet C.	Mol Biol Evol	10.1093/molbev/msaa312	2021
	Respiration-driven methanotrophic growth of diverse marine methanogens.	Yan Z, Du K, Yan Y, Huang R, Zhu F, Yuan X, Wang S, Ferry JG.	Proc Natl Acad Sci U S A	10.1073/pnas.2303179120	2023
Enzymology	Changing the Electron Acceptor Specificity of Rhodobacter capsulatus Formate Dehydrogenase from NAD⁺ to NADP.	Kumar H, Leimkuhler S.	Int J Mol Sci	10.3390/ijms242216067	2023
	Identification of structurally diverse methanofuran coenzymes in methanococcales that are both N-formylated and N-acetylated.	Allen KD, White RH.	Biochemistry	10.1021/bi500973h	2014
Proteome	Community- and genome-based evidence for a shaping influence of redox potential on bacterial protein evolution.	Dick JM, Meng D.	mSystems	10.1128/msystems.00014-23	2023
	The RNA-Binding and RNA-Melting Activities of the Multifunctional Protein Nucleobindin 1.	Mikhaylina A, Svoeglazova A, Stolboushkina E, Tishchenko S, Kostareva O.	Int J Mol Sci	10.3390/ijms24076193	2023
	Engineering a universal and efficient platform for terpenoid synthesis in yeast.	Ma Y, Zu Y, Huang S, Stephanopoulos G.	Proc Natl Acad Sci U S A	10.1073/pnas.2207680120	2023
	Endonucleolytic processing plays a critical role in the maturation of ribosomal RNA in Methanococcus maripaludis.	Qi L, Liu H, Gao J, Deng K, Wang X, Dong X, Li J.	RNA Biol	10.1080/15476286.2023.2258035	2023
	Catalytic Cycle of the Bifunctional Enzyme Phosphoribosyl-ATP Pyrophosphohydrolase/Phosphoribosyl-AMP Cyclohydrolase.	Fisher G, Pecaver E, Read BJ, Leese SK, Laing E, Dickson AL, Czekster CM, da Silva RG.	ACS Catal	10.1021/acscatal.3c01111	2023
Pathogenicity	Tungsten-enhanced growth of Methanosphaera stadtmanae.	Dridi B, Khelaifia S, Fardeau ML, Ollivier B, Drancourt M.	BMC Res Notes	10.1186/1756-0500-5-238	2012
	Biogenic formation of amorphous carbon by anaerobic methanotrophs and select methanogens.	Allen KD, Wegener G, Matthew Sublett D, Bodnar RJ, Feng X, Wendt J, White RH.	Sci Adv	10.1126/sciadv.abg9739	2021
Pathogenicity	Evaluation of methanogenic strains and their ability to endure aeration and water stress.	Liu CT, Miyaki T, Aono T, Oyaizu H.	Curr Microbiol	10.1007/s00284-007-9059-7	2008
Metabolism	Cloning and heterologous expression of a Methanococcus vannielii gene encoding a selenium-binding protein.	Self WT, Pierce R, Stadtman TC.	IUBMB Life	10.1080/15216540400010818	2004
Metabolism	Methanococcus vannielii selenium metabolism: purification and N-terminal amino acid sequences of a novel selenium-binding protein and selenocysteine lyase.	Stadtman T.	IUBMB Life	10.1080/15216540400008911	2004
Metabolism	Structure of the ribosomal protein L1-mRNA complex at 2.1 A resolution: common features of crystal packing of L1-RNA complexes.	Tishchenko S, Nikonova E, Nikulin A, Nevskaya N, Volchkov S, Piendl W, Garber M, Nikonov S.	Acta Crystallogr D Biol Crystallogr	10.1107/s0907444906041655	2006
Enzymology	Visualization of mcr mRNA in a methanogen by fluorescence in situ hybridization with an oligonucleotide probe and two-pass tyramide signal amplification (two-pass TSA-FISH).	Kubota K, Ohashi A, Imachi H, Harada H.	J Microbiol Methods	10.1016/j.mimet.2006.02.002	2006
Metabolism	Heterologous Catalysis of the Final Steps of Tetracycline Biosynthesis by Saccharomyces cerevisiae.	Herbst E, Lee A, Tang Y, Snyder SA, Cornish VW.	ACS Chem Biol	10.1021/acschembio.1c00259	2021
	Bypassing the Need for the Transcriptional Activator EarA through a Spontaneous Deletion in the BRE Portion of the fla Operon Promoter in Methanococcus maripaludis.	Ding Y, Berezuk A, Khursigara CM, Jarrell KF.	Front Microbiol	10.3389/fmicb.2017.01329	2017
	Microbiome Aggregated Traits and Assembly Are More Sensitive to Soil Management than Diversity.	Neal AL, Hughes D, Clark IM, Jansson JK, Hirsch PR.	mSystems	10.1128/msystems.01056-20	2021
	Flagellin genes of Methanococcus vannielii: amplification by the polymerase chain reaction, demonstration of signal peptides and identification of major components of the flagellar filament.	Bayley DP, Florian V, Klein A, Jarrell KF.	Mol Gen Genet	10.1007/s004380050777	1998
Transcriptome	Impact of 16S rRNA Gene Redundancy and Primer Pair Selection on the Quantification and Classification of Oral Microbiota in Next-Generation Sequencing.	Regueira-Iglesias A, Vazquez-Gonzalez L, Balsa-Castro C, Blanco-Pintos T, Vila-Blanco N, Carreira MJ, Tomas I.	Microbiol Spectr	10.1128/spectrum.04398-22	2023
	Overexpression, crystallization and preliminary X-ray crystallographic analysis of Pyrococcus furiosus PF2050, a member of the DUF2666 protein family.	Han BG, Lee BI.	Acta Crystallogr Sect F Struct Biol Cryst Commun	10.1107/s1744309111023888	2011
	Discoveries of vitamin B12 and selenium enzymes.	Stadtman TC.	Annu Rev Biochem	10.1146/annurev.biochem.71.083101.134224	2002
	MvaL1 autoregulates the synthesis of the three ribosomal proteins encoded on the MvaL1 operon of the archaeon Methanococcus vannielii by inhibiting its own translation before or at the formation of the first peptide bond.	Mayer C, Kohrer C, Grobner P, Piendl W.	Mol Microbiol	10.1046/j.1365-2958.1998.00693.x	1998
	Genes and derived amino acid sequences of S-layer proteins from mesophilic, thermophilic, and extremely thermophilic methanococci.	Akca E, Claus H, Schultz N, Karbach G, Schlott B, Debaerdemaeker T, Declercq JP, Konig H.	Extremophiles	10.1007/s00792-001-0264-1	2002
Metabolism	Structural and mechanistic insights into the bifunctional HISN2 enzyme catalyzing the second and third steps of histidine biosynthesis in plants.	Witek W, Sliwiak J, Ruszkowski M.	Sci Rep	10.1038/s41598-021-88920-2	2021
Phylogeny	Microbial diversity and abundance in the Xinjiang Luliang long-term water-flooding petroleum reservoir.	Gao P, Tian H, Li G, Sun H, Ma T.	Microbiologyopen	10.1002/mbo3.241	2015
Phylogeny	[Use of the level of G+C n DNA for studying the molecular phylogeny o f methanogenic archaebacteria].	Ivanov VN, Stabnikova EV.	Mikrobiologiia		1999
Phylogeny	Comparison of Metagenomics and Metatranscriptomics Tools: A Guide to Making the Right Choice.	Terron-Camero LC, Gordillo-Gonzalez F, Salas-Espejo E, Andres-Leon E.	Genes (Basel)	10.3390/genes13122280	2022
	Association of the mcrD gene product with methyl coenzyme M reductase in Methanococcus vannielii.	Stroup D, Reeve JN.	Biochim Biophys Acta	10.1016/0167-4838(93)90080-b	1993
	Solution NMR structure of selenium-binding protein from Methanococcus vannielii.	Suzuki M, Lee DY, Inyamah N, Stadtman TC, Tjandra N.	J Biol Chem	10.1074/jbc.m803773200	2008
Metabolism	Identification of the mcrC gene product in Methanococcus vannielii.	Stroup D, Reeve JN.	FEMS Microbiol Lett	10.1111/j.1574-6968.1993.tb06372.x	1993
Metabolism	Exploring natural biodiversity to expand access to microbial terpene synthesis.	Rico J, Duquesne K, Petit JL, Mariage A, Darii E, Peruch F, de Berardinis V, Iacazio G.	Microb Cell Fact	10.1186/s12934-019-1074-4	2019
Metabolism	mRNAs in the methanogenic archaeon Methanococcus vannielii: numbers, half-lives and processing.	Hennigan AN, Reeve JN.	Mol Microbiol	10.1111/j.1365-2958.1994.tb00344.x	1994
Metabolism	Methanococcus vannielii selenium-binding protein (SeBP): chemical reactivity of recombinant SeBP produced in Escherichia coli.	Patteson KG, Trivedi N, Stadtman TC.	Proc Natl Acad Sci U S A	10.1073/pnas.0505650102	2005
Metabolism	Catalytic zinc site and mechanism of the metalloenzyme PR-AMP cyclohydrolase.	D'Ordine RL, Linger RS, Thai CJ, Davisson VJ.	Biochemistry	10.1021/bi300391m	2012
Metabolism	Interaction of ribosomal L1 proteins from mesophilic and thermophilic Archaea and Bacteria with specific L1-binding sites on 23S rRNA and mRNA.	Kohrer C, Mayer C, Neumair O, Grobner P, Piendl W.	Eur J Biochem	10.1046/j.1432-1327.1998.2560097.x	1998
Enzymology	N1-(5'-phosphoribosyl)adenosine-5'-monophosphate cyclohydrolase: purification and characterization of a unique metalloenzyme.	D'Ordine RL, Klem TJ, Davisson VJ.	Biochemistry	10.1021/bi982475x	1999
Phylogeny	Isolation and Characterization of a New Methanobacterium formicicum KOR-1 from an Anaerobic Digester Using Pig Slurry.	Battumur U, Yoon YM, Kim CH.	Asian-Australas J Anim Sci	10.5713/ajas.15.0507	2016
Metabolism	Presence of a gene in the archaebacterium Methanococcus vannielii homologous to secY of eubacteria.	Auer J, Spicker G, Bock A.	Biochimie	10.1016/0300-9084(91)90048-6	1991
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Metabolism	TBP domain symmetry in basal and activated archaeal transcription.	Ouhammouch M, Hausner W, Geiduschek EP.	Mol Microbiol	10.1111/j.1365-2958.2008.06512.x	2009
	Cloning and sequencing of the fus-gene encoding elongation factor 2 in the archaebacterium Thermoplasma acidophilum.	Pechmann H, Tesch A, Klink F.	FEMS Microbiol Lett	10.1016/0378-1097(91)90526-g	1991
	Chromosomal organization and nucleotide sequence of the fus-gene encoding elongation factor 2 (EF-2) of the hyperthermophilic archaeum Pyrococcus woesei.	Creti R, Sterpetti P, Bocchetta M, Ceccarelli E, Cammarano P.	FEMS Microbiol Lett	10.1111/j.1574-6968.1995.tb07395.x	1995
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Phylogeny	Phylogeny and taxonomy of mesophilic Methanococcus spp. and comparison of rRNA, DNA hybridization, and phenotypic methods.	Keswani J, Orkand S, Premachandran U, Mandelco L, Franklin MJ, Whitman WB.	Int J Syst Bacteriol	10.1099/00207713-46-3-727	1996
	Organization of a Sulfolobus solfataricus gene cluster homologous to the Escherichia coli str operon.	Ianniciello G, Gallo M, Arcari P, Bocchini V.	Biochem Mol Biol Int		1994
	TTG serves as an initiation codon for the ribosomal protein MvaS7 from the archaeon Methanococcus vannielii.	Golderer G, Dlaska M, Grobner P, Piendl W.	J Bacteriol	10.1128/jb.177.20.5994-5996.1995	1995
	An archaebacterial gene from Methanococcus vannielii encoding a protein homologous to the ribosomal protein L10 family.	Kopke AK, Baier G, Wittmann-Liebold B.	FEBS Lett	10.1016/0014-5793(89)81326-2	1989
Phylogeny	Mass spectrometry defines the stoichiometry of ribosomal stalk complexes across the phylogenetic tree.	Gordiyenko Y, Videler H, Zhou M, McKay AR, Fucini P, Biegel E, Muller V, Robinson CV.	Mol Cell Proteomics	10.1074/mcp.m000072-mcp201	2010
	Organization and nucleotide sequence of a transcriptional unit of Methanococcus vannielii comprising genes for protein synthesis elongation factors and ribosomal proteins.	Lechner K, Heller G, Bock A.	J Mol Evol	10.1007/bf02106178	1989
	Sequence of the gene for ribosomal protein L23 from the archaebacterium Methanococcus vannielii.	Kopke AK, Wittmann-Liebold B.	FEBS Lett	10.1016/0014-5793(88)80942-6	1988
	Comparative studies of ribosomal proteins and their genes from Methanococcus vannielii and other organisms.	Kopke AK, Wittmann-Liebold B.	Can J Microbiol	10.1139/m89-003	1989
Phylogeny	Comparative analysis of the methanogen diversity in horse and pony by using mcrA gene and archaeal 16s rRNA gene clone libraries.	Lwin KO, Matsui H.	Archaea	10.1155/2014/483574	2014
Enzymology	Mode of inhibition of the DNA polymerase of Methanococcus vannielii by aphidicolin.	Zabel HP, Holler E, Winter J.	Eur J Biochem	10.1111/j.1432-1033.1987.tb11208.x	1987
Metabolism	Conversion of purines to xanthine by Methanococcus vannielii.	DeMoll E, Tsai L.	Arch Biochem Biophys	10.1016/0003-9861(86)90747-2	1986
	The genes for ribosomal protein L15 and the protein equivalent to secY in the archaebacterium Haloarcula (Halobacterium) marismortui.	Arndt E.	Biochim Biophys Acta	10.1016/0167-4781(92)90474-e	1992
	N-terminal modification and amino-acid sequence of the ribosomal protein HmaS7 from Haloarcula marismortui and homology studies to other ribosomal proteins.	Klussmann S, Franke P, Bergmann U, Kostka S, Wittmann-Liebold B.	Biol Chem Hoppe Seyler	10.1515/bchm3.1993.374.1-6.305	1993
	2-Selenouridine triphosphate synthesis and Se-RNA transcription.	Sun H, Jiang S, Caton-Williams J, Liu H, Huang Z.	RNA	10.1261/rna.038075.112	2013
	Primary structure of the archaebacterial Methanococcus vannielii ribosomal protein L12. Amino acid sequence determination, oligonucleotide hybridization, and sequencing of the gene.	Strobel O, Kopke AK, Kamp RM, Bock A, Wittmann-Liebold B.	J Biol Chem	10.1016/s0021-9258(18)68675-2	1988
Metabolism	Correlation between glycosylation of flagellin proteins and sensitivity of flagellar filaments to Triton X-100 in methanogens.	Faguy DM, Koval SF, Jarrell KF.	FEMS Microbiol Lett	10.1016/0378-1097(92)90616-v	1992
Enzymology	Cloning of DNA sequences from Methanococcus vannielii capable of autonomous replication in yeast.	Meile L, Leisinger T, Reeve JN.	Arch Microbiol	10.1007/bf00411245	1985
	An archaebacterial promoter sequence assigned by RNA polymerase binding experiments.	Thomm M, Wich G, Brown JW, Frey G, Sherf BA, Beckler GS.	Can J Microbiol	10.1139/m89-005	1989
	Cloning and sequencing of the gene coding for the elongation factor 1 alpha from the archaebacterium Thermoplasma acidophilum.	Tesch A, Klink F.	FEMS Microbiol Lett	10.1016/0378-1097(90)90236-j	1990
	Relatedness of the flagellins from methanogens.	Kalmokoff ML, Koval SF, Jarrell KF.	Arch Microbiol	10.1007/bf00276766	1992
	Organization and nucleotide sequence of ten ribosomal protein genes from the region equivalent to the spectinomycin operon in the archaebacterium Halobacterium marismortui.	Scholzen T, Arndt E.	Mol Gen Genet	10.1007/bf00282450	1991
	Conservation of primary structure in the hisI gene of the archaebacterium, Methanococcus vannielii, the eubacterium Escherichia coli, and the eucaryote Saccharomyces cerevisiae.	Beckler GS, Reeve JN.	Mol Gen Genet	10.1007/bf00330200	1986
Phylogeny	Phylogenetic depth of Thermotoga maritima inferred from analysis of the fus gene: amino acid sequence of elongation factor G and organization of the Thermotoga str operon.	Tiboni O, Cantoni R, Creti R, Cammarano P, Sanangelantoni AM.	J Mol Evol	10.1007/bf02193628	1991
	Study of completed archaeal genomes and proteomes: hypothesis of strong mutational AT pressure existed in their common predecessor.	Khrustalev VV, Barkovsky EV.	Genomics Proteomics Bioinformatics	10.1016/s1672-0229(10)60003-4	2010
	Genetic engineering and overexpression of ribosomal L12 protein genes from three different archaebacteria in E coli.	Kopke AK, Hannemann F, Boeckh T.	Biochimie	10.1016/0300-9084(91)90044-2	1991
	Apparent operon for a 5S ribosomal RNA gene and for tRNA genes in the archaebacterium Methanococcus vannielii.	Wich G, Jarsch M, Bock A.	Mol Gen Genet	10.1007/bf00334107	1984
Enzymology	Selenophosphate synthetase: detection in extracts of rat tissues by immunoblot assay and partial purification of the enzyme from the archaean Methanococcus vannielii.	Kim IY, Stadtman TC.	Proc Natl Acad Sci U S A	10.1073/pnas.92.17.7710	1995
	Primary structure of rat ribosomal protein S2. A ribosomal protein with arginine-glycine tandem repeats and RGGF motifs that are associated with nucleolar localization and binding to ribonucleic acids.	Suzuki K, Olvera J, Wool IG.	J Biol Chem	10.1016/s0021-9258(18)54884-5	1991
	A comparison of the methyl reductase genes and gene products.	Weil CF, Sherf BA, Reeve JN.	Can J Microbiol	10.1139/m89-016	1989
	Comparative analysis of ribosomal protein L5 sequences from bacteria of the genus Thermus.	Jahn O, Hartmann RK, Boeckh T, Erdmann VA.	Biochimie	10.1016/0300-9084(91)90046-4	1991
Metabolism	Overexpression of the methanococcal ribosomal protein L12 in Escherichia coli and its incorporation into halobacterial 50 S subunits yielding active ribosomes.	Kopke AK, Paulke C, Gewitz HS.	J Biol Chem	10.1016/s0021-9258(19)39345-7	1990
Metabolism	C5-Substituted 2-Selenouridines Ensure Efficient Base Pairing with Guanosine; Consequences for Reading the NNG-3' Synonymous mRNA Codons.	Leszczynska G, Cypryk M, Gostynski B, Sadowska K, Herman P, Bujacz G, Lodyga-Chruscinska E, Sochacka E, Nawrot B.	Int J Mol Sci	10.3390/ijms21082882	2020
	S-layer and cytoplasmic membrane - exceptions from the typical archaeal cell wall with a focus on double membranes.	Klingl A.	Front Microbiol	10.3389/fmicb.2014.00624	2014
Metabolism	Anaerobic digestion of renewable biomass: thermophilic temperature governs methanogen population dynamics.	Krakat N, Westphal A, Schmidt S, Scherer P.	Appl Environ Microbiol	10.1128/aem.02397-09	2010
	Organization and structure of the Methanococcus transcriptional unit homologous to the Escherichia coli "spectinomycin operon". Implications for the evolutionary relationship of 70 S and 80 S ribosomes.	Auer J, Spicker G, Bock A.	J Mol Biol	10.1016/0022-2836(89)90167-8	1989
	Six antigenic determinants in the surface layer of the archaebacterium Methanococcus vannielii revealed by monoclonal antibodies.	Conway de Macario E, Konig H, Macario AJ, Kandler O.	J Immunol	10.4049/jimmunol.132.2.883	1984
Metabolism	Properties of the elongation factor 1 alpha in the thermoacidophilic archaebacterium Sulfolobus solfataricus.	Masullo M, Raimo G, Parente A, Gambacorta A, De Rosa M, Bocchini V.	Eur J Biochem	10.1111/j.1432-1033.1991.tb16151.x	1991
Enzymology	A selenium-containing hydrogenase from Methanococcus vannielii. Identification of the selenium moiety as a selenocysteine residue.	Yamazaki S.	J Biol Chem	10.1016/s0021-9258(18)34271-6	1982
Metabolism	Response of the Anaerobic Methanotroph "Candidatus Methanoperedens nitroreducens" to Oxygen Stress.	Guerrero-Cruz S, Cremers G, van Alen TA, Op den Camp HJM, Jetten MSM, Rasigraf O, Vaksmaa A.	Appl Environ Microbiol	10.1128/aem.01832-18	2018
Metabolism	Analogues of 8-hydroxy-5-deazaflavin cofactor: relative activity as substrates for 8-hydroxy-5-deazaflavin-dependent NADP+ reductase from Methanococcus vannielii.	Yamazaki S, Tsai L, Stadtman TC.	Biochemistry	10.1021/bi00534a019	1982
	Genes encoding 5S rRNA and tRNAs in the extremely thermophilic archaebacterium Methanothermus fervidus.	Haas ES, Daniels CJ, Reeve JN.	Gene	10.1016/0378-1119(89)90073-5	1989
	Gene organization and structure of two transcriptional units from Methanococcus coding for ribosomal proteins and elongation factors.	Auer J, Lechner K, Bock A.	Can J Microbiol	10.1139/m89-031	1989
Metabolism	Methanococci use the diaminopimelate aminotransferase (DapL) pathway for lysine biosynthesis.	Liu Y, White RH, Whitman WB.	J Bacteriol	10.1128/jb.00172-10	2010
	Characteristic views of prokaryotic 50S ribosomal subunits.	Harauz G, Stoeffler-Meilicke M, van Heel M.	J Mol Evol	10.1007/bf02101154	1987
Enzymology	Stereochemical studies of 8-hydroxy-5-deazaflavin-dependent NADP+ reductase from Methanococcus vannielii.	Yamazaki S, Tsai L, Stadtman TC, Jacobson FS, Walsh C.	J Biol Chem	10.1016/s0021-9258(19)70519-5	1980
Metabolism	Selenium-dependent and selenium-independent formate dehydrogenases of Methanococcus vannielii. Separation of the two forms and characterization of the purified selenium-independent form.	Jones JB, Stadtman TC.	J Biol Chem	10.1016/s0021-9258(19)70024-6	1981
Metabolism	RNA polymerase-binding and transcription initiation sites upstream of the methyl reductase operon of Methanococcus vannielii.	Thomm M, Sherf BA, Reeve JN.	J Bacteriol	10.1128/jb.170.4.1958-1961.1988	1988
Enzymology	Purification and properties of 8-hydroxy-5-deazaflavin-dependent NADP+ reductase from Methanococcus vannielii.	Yamazaki S, Tsai L.	J Biol Chem	10.1016/s0021-9258(18)43762-3	1980
Metabolism	Reconstitution of a formate-NADP+ oxidoreductase from formate dehydrogenase and a 5-deazaflavin-linked NADP+ reductase isolated from Methanococcus vannielii.	Jones JB, Stadtman TC.	J Biol Chem	10.1016/s0021-9258(19)86139-2	1980
	Structure of Ribosomal Subunits of M. vannielii: Ribosomal Morphology as a Phylogenetic Marker.	Stoffler-Meilicke M, Bohme C, Strobel O, Bock A, Stoffler G.	Science	10.1126/science.231.4743.1306	1986
	Transcription in methanogens. Evidence for specific in vitro transcription of the purified DNA-dependent RNA polymerase of Methanococcus thermolithotrophicus.	Thomm M, Stetter KO.	Eur J Biochem	10.1111/j.1432-1033.1985.tb08932.x	1985
	Identification of a eukaryotic-like protein kinase gene in Archaebacteria.	Smith RF, King KY.	Protein Sci	10.1002/pro.5560040115	1995
Enzymology	Application of high-performance liquid chromatographic techniques to the separation of ribosomal proteins of different organisms.	Kamp RM, Bosserhoff A, Kamp D, Wittmann-Liebold B.	J Chromatogr	10.1016/s0021-9673(01)91658-9	1984
Metabolism	Biosynthesis of selenium-modified tRNAs in Methanococcus vannielii.	Politino M, Tsai L, Veres Z, Stadtman TC.	Proc Natl Acad Sci U S A	10.1073/pnas.87.16.6345	1990
Enzymology	Studies of the GTPase domain of archaebacterial ribosomes.	Beauclerk AA, Hummel H, Holmes DJ, Bock A, Cundliffe E.	Eur J Biochem	10.1111/j.1432-1033.1985.tb09095.x	1985
Metabolism	The physiological effect of heavy metals and volatile fatty acids on Methanococcus maripaludis S2.	Abdel Azim A, Rittmann SKR, Fino D, Bochmann G.	Biotechnol Biofuels	10.1186/s13068-018-1302-x	2018
	Oxygen sensitivity of methanogenic bacteria.	Kiener A, Leisinger T.	Syst Appl Microbiol	10.1016/s0723-2020(83)80017-4	1983
Enzymology	Identification and synthesis of a naturally occurring selenonucleoside in bacterial tRNAs: 5-[(methylamino)methyl]-2-selenouridine.	Wittwer AJ, Tsai L, Ching WM, Stadtman TC.	Biochemistry	10.1021/bi00315a021	1984
Metabolism	Ribosome specificity of archaebacterial elongation factor 2. Studies with hybrid polyphenylalanine synthesis systems.	Klink F, Schumann H, Thomsen A.	FEBS Lett	10.1016/0014-5793(83)80233-6	1983
	Conservation of structure in the human gene encoding argininosuccinate synthetase and the argG genes of the archaebacteria Methanosarcina barkeri MS and Methanococcus vannielii.	Morris CJ, Reeve JN.	J Bacteriol	10.1128/jb.170.7.3125-3130.1988	1988
	Identification of the mcrD gene product and its association with component C of methyl coenzyme M reductase in Methanococcus vannielii.	Sherf BA, Reeve JN.	J Bacteriol	10.1128/jb.172.4.1828-1833.1990	1990
Metabolism	Oligonucleotide primers, probes and molecular methods for the environmental monitoring of methanogenic archaea.	Narihiro T, Sekiguchi Y.	Microb Biotechnol	10.1111/j.1751-7915.2010.00239.x	2011
Metabolism	Correlation of methane production and functional gene transcriptional activity in a peat soil.	Freitag TE, Prosser JI.	Appl Environ Microbiol	10.1128/aem.01021-09	2009
Metabolism	Identification of methyl coenzyme M reductase A (mcrA) genes associated with methane-oxidizing archaea.	Hallam SJ, Girguis PR, Preston CM, Richardson PM, DeLong EF.	Appl Environ Microbiol	10.1128/aem.69.9.5483-5491.2003	2003
Enzymology	Purification and properties of carbon monoxide dehydrogenase from Methanococcus vannielii.	DeMoll E, Grahame DA, Harnly JM, Tsai L, Stadtman TC.	J Bacteriol	10.1128/jb.169.9.3916-3920.1987	1987
Enzymology	Stereochemical studies of a selenium-containing hydrogenase from Methanococcus vannielii: determination of the absolute configuration of C-5 chirally labeled dihydro-8-hydroxy-5-deazaflavin cofactor.	Yamazaki S, Tsai L, Stadtman TC, Teshima T, Nakaji A, Shiba T.	Proc Natl Acad Sci U S A	10.1073/pnas.82.5.1364	1985
Metabolism	Purine metabolism in Methanococcus vannielii.	DeMoll E, Auffenberg T.	J Bacteriol	10.1128/jb.175.18.5754-5761.1993	1993
Metabolism	Isolation, characterization, and ecology of sulfur-respiring crenarchaea inhabiting acid-sulfate-chloride-containing geothermal springs in Yellowstone National Park.	Boyd ES, Jackson RA, Encarnacion G, Zahn JA, Beard T, Leavitt WD, Pi Y, Zhang CL, Pearson A, Geesey GG.	Appl Environ Microbiol	10.1128/aem.01321-07	2007
	Autogenous translational regulation of the ribosomal MvaL1 operon in the archaebacterium Methanococcus vannielii.	Hanner M, Mayer C, Kohrer C, Golderer G, Grobner P, Piendl W.	J Bacteriol	10.1128/jb.176.2.409-418.1994	1994
Transcriptome	RNA at 92 °C: the non-coding transcriptome of the hyperthermophilic archaeon Pyrococcus abyssi.	Toffano-Nioche C, Ott A, Crozat E, Nguyen AN, Zytnicki M, Leclerc F, Forterre P, Bouloc P, Gautheret D.	RNA Biol	10.4161/rna.25567	2013
Metabolism	RNA chaperone activity of L1 ribosomal proteins: phylogenetic conservation and splicing inhibition.	Ameres SL, Shcherbakov D, Nikonova E, Piendl W, Schroeder R, Semrad K.	Nucleic Acids Res	10.1093/nar/gkm318	2007
Metabolism	An archaebacterial cell-free transcription system. The expression of tRNA genes from Methanococcus vannielii is mediated by a transcription factor.	Frey G, Thomm M, Brudigam B, Gohl HP, Hausner W.	Nucleic Acids Res	10.1093/nar/18.6.1361	1990
	Methanococcus vannielii: culture and effects of selenium and tungsten on growth.	Jones JB, Stadtman TC.	J Bacteriol	10.1128/jb.130.3.1404-1406.1977	1977
	DNA sequence of the 16S rRNA/23S rRNA intercistronic spacer of two rDNA operons of the archaebacterium Methanococcus vannielii.	Jarsch M, Bock A.	Nucleic Acids Res	10.1093/nar/11.21.7537	1983
Enzymology	Distribution of two selenonucleosides among the selenium-containing tRNAs from Methanococcus vannielii.	Ching WM, Wittwer AJ, Tsai L, Stadtman TC.	Proc Natl Acad Sci U S A	10.1073/pnas.81.1.57	1984
	Control of ribosomal protein L1 synthesis in mesophilic and thermophilic archaea.	Kraft A, Lutz C, Lingenhel A, Grobner P, Piendl W.	Genetics	10.1093/genetics/152.4.1363	1999
	Gene for the diphtheria toxin-susceptible elongation factor 2 from Methanococcus vannielii.	Lechner K, Heller G, Bock A.	Nucleic Acids Res	10.1093/nar/16.16.7817	1988
Enzymology	Component H of the DNA-dependent RNA polymerases of Archaea is homologous to a subunit shared by the three eucaryal nuclear RNA polymerases.	Klenk HP, Palm P, Lottspeich F, Zillig W.	Proc Natl Acad Sci U S A	10.1073/pnas.89.1.407	1992
Metabolism	Archaeal ubiquitin-like proteins: functional versatility and putative ancestral involvement in tRNA modification revealed by comparative genomic analysis.	Makarova KS, Koonin EV.	Archaea	10.1155/2010/710303	2010
	Messenger RNA processing in Methanocaldococcus (Methanococcus) jannaschii.	Zhang J, Olsen GJ.	RNA	10.1261/rna.1715209	2009
Metabolism	Domain I of ribosomal protein L1 is sufficient for specific RNA binding.	Tishchenko S, Nikonova E, Kljashtorny V, Kostareva O, Nevskaya N, Piendl W, Davydova N, Streltsov V, Garber M, Nikonov S.	Nucleic Acids Res	10.1093/nar/gkm898	2007
	Putative promoter elements for the ribosomal RNA genes of the thermoacidophilic archaebacterium Sulfolobus sp. strain B12.	Reiter WD, Palm P, Voos W, Kaniecki J, Grampp B, Schulz W, Zillig W.	Nucleic Acids Res	10.1093/nar/15.14.5581	1987
Enzymology	Polyadenylated RNA isolated from the archaebacterium Halobacterium halobium.	Brown JW, Reeve JN.	J Bacteriol	10.1128/jb.166.2.686-688.1986	1986
Metabolism	Importance of uncharged polar residues and proline in the proximal two-thirds (Pro107-Ser128) of the highly conserved region of mouse ileal Na+-dependent bile acid transporter, Slc10a2, in transport activity and cellular expression.	Saeki T, Sato K, Ito S, Ikeda K, Kanamoto R.	BMC Physiol	10.1186/1472-6793-13-4	2013
	Most RNAs regulating ribosomal protein biosynthesis in Escherichia coli are narrowly distributed to Gammaproteobacteria.	Fu Y, Deiorio-Haggar K, Anthony J, Meyer MM.	Nucleic Acids Res	10.1093/nar/gkt055	2013
	An archaebacterial promoter element for stable RNA genes with homology to the TATA box of higher eukaryotes.	Thomm M, Wich G.	Nucleic Acids Res	10.1093/nar/16.1.151	1988
Metabolism	An intertwined evolutionary history of methanogenic archaea and sulfate reduction.	Susanti D, Mukhopadhyay B.	PLoS One	10.1371/journal.pone.0045313	2012
Metabolism	Biosynthesis of 4-thiouridine in tRNA in the methanogenic archaeon Methanococcus maripaludis.	Liu Y, Zhu X, Nakamura A, Orlando R, Soll D, Whitman WB.	J Biol Chem	10.1074/jbc.m112.405688	2012
Metabolism	An archaebacterial RNA polymerase binding site and transcription initiation of the hisA gene in Methanococcus vannielii.	Brown JW, Thomm M, Beckler GS, Frey G, Stetter KO, Reeve JN.	Nucleic Acids Res	10.1093/nar/16.1.135	1988
Metabolism	A bacterial process for selenium nanosphere assembly.	Debieux CM, Dridge EJ, Mueller CM, Splatt P, Paszkiewicz K, Knight I, Florance H, Love J, Titball RW, Lewis RJ, Richardson DJ, Butler CS.	Proc Natl Acad Sci U S A	10.1073/pnas.1105959108	2011
	Structure analysis of free and bound states of an RNA aptamer against ribosomal protein S8 from Bacillus anthracis.	Davlieva M, Donarski J, Wang J, Shamoo Y, Nikonowicz EP.	Nucleic Acids Res	10.1093/nar/gku743	2014
Pathogenicity	Tungsten and molybdenum regulation of formate dehydrogenase expression in Desulfovibrio vulgaris Hildenborough.	da Silva SM, Pimentel C, Valente FM, Rodrigues-Pousada C, Pereira IA.	J Bacteriol	10.1128/jb.00042-11	2011
	Methanococcus vannielii: ultrastructure and sensitivity to detergents and antibiotics.	Jones JB, Bowers B, Stadtman TC.	J Bacteriol	10.1128/jb.130.3.1357-1363.1977	1977
	Structure and expression of the genes, mcrBDCGA, which encode the subunits of component C of methyl coenzyme M reductase in Methanococcus vannielii.	Cram DS, Sherf BA, Libby RT, Mattaliano RJ, Ramachandran KL, Reeve JN.	Proc Natl Acad Sci U S A	10.1073/pnas.84.12.3992	1987
Metabolism	The structure of Aquifex aeolicus ribosomal protein S8 reveals a unique subdomain that contributes to an extremely tight association with 16S rRNA.	Menichelli E, Edgcomb SP, Recht MI, Williamson JR.	J Mol Biol	10.1016/j.jmb.2011.10.046	2012
	Characterization of a Chinese hamster ovary cell mutant having a mutation in elongation factor-2.	Gupta PK, Liu S, Leppla SH.	PLoS One	10.1371/journal.pone.0009078	2010
Metabolism	Complete genome sequence of the genetically tractable hydrogenotrophic methanogen Methanococcus maripaludis.	Hendrickson EL, Kaul R, Zhou Y, Bovee D, Chapman P, Chung J, Conway de Macario E, Dodsworth JA, Gillett W, Graham DE, Hackett M, Haydock AK, Kang A, Land ML, Levy R, Lie TJ, Major TA, Moore BC, Porat I, Palmeiri A, Rouse G, Saenphimmachak C, Soll D, Van Dien S, Wang T, Whitman WB, Xia Q, Zhang Y, Larimer FW, Olson MV, Leigh JA.	J Bacteriol	10.1128/jb.186.20.6956-6969.2004	2004
	Role of Amino Acids and Vitamins in Nutrition of Mesophilic Methanococcus spp.	Whitman WB, Sohn S, Kuk S, Xing R.	Appl Environ Microbiol	10.1128/aem.53.10.2373-2378.1987	1987
	Structure determination of two new amino acid-containing derivatives of adenosine from tRNA of thermophilic bacteria and archaea.	Reddy DM, Crain PF, Edmonds CG, Gupta R, Hashizume T, Stetter KO, Widdel F, McCloskey JA.	Nucleic Acids Res	10.1093/nar/20.21.5607	1992
	Crystal structure of the outer membrane protein RcsF, a new substrate for the periplasmic protein-disulfide isomerase DsbC.	Leverrier P, Declercq JP, Denoncin K, Vertommen D, Hiniker A, Cho SH, Collet JF.	J Biol Chem	10.1074/jbc.m111.224865	2011
Metabolism	Biosynthesis of wyosine derivatives in tRNA: an ancient and highly diverse pathway in Archaea.	de Crecy-Lagard V, Brochier-Armanet C, Urbonavicius J, Fernandez B, Phillips G, Lyons B, Noma A, Alvarez S, Droogmans L, Armengaud J, Grosjean H.	Mol Biol Evol	10.1093/molbev/msq096	2010
	Polyadenylated, noncapped RNA from the archaebacterium Methanococcus vannielii.	Brown JW, Reeve JN.	J Bacteriol	10.1128/jb.162.3.909-917.1985	1985
	Sequence-based analysis of protein energy landscapes reveals nonuniform thermal adaptation within the proteome.	Gu J, Hilser VJ.	Mol Biol Evol	10.1093/molbev/msp140	2009
	Composition and Characterization of tRNA from Methanococcus vannielii.	Best AN.	J Bacteriol	10.1128/jb.133.1.240-250.1978	1978
Metabolism	A whole-genome approach to identifying protein binding sites: promoters in Methanocaldococcus (Methanococcus) jannaschii.	Li E, Reich CI, Olsen GJ.	Nucleic Acids Res	10.1093/nar/gkm499	2008
	Transcription signals for stable RNA genes in Methanococcus.	Wich G, Hummel H, Jarsch M, Bar U, Bock A.	Nucleic Acids Res	10.1093/nar/14.6.2459	1986
	Crystal structure of a fibrillarin homologue from Methanococcus jannaschii, a hyperthermophile, at 1.6 A resolution.	Wang H, Boisvert D, Kim KK, Kim R, Kim SH.	EMBO J	10.1093/emboj/19.3.317	2000
Enzymology	Atomic structures and functional implications of the archaeal RecQ-like helicase Hjm.	Oyama T, Oka H, Mayanagi K, Shirai T, Matoba K, Fujikane R, Ishino Y, Morikawa K.	BMC Struct Biol	10.1186/1472-6807-9-2	2009
Metabolism	Maturation of the 5S rRNA 5' end is catalyzed in vitro by the endonuclease tRNase Z in the archaeon H. volcanii.	Holzle A, Fischer S, Heyer R, Schutz S, Zacharias M, Walther P, Allers T, Marchfelder A.	RNA	10.1261/rna.933208	2008
	Reactor-scale cultivation of the hyperthermophilic methanarchaeon Methanococcus jannaschii to high cell densities.	Mukhopadhyay B, Johnson EF, Wolfe RS.	Appl Environ Microbiol	10.1128/aem.65.11.5059-5065.1999	1999
	Functional implications related to the gene structure of the elongation factor EF-Tu from Halobacterium marismortui.	Baldacci G, Guinet F, Tillit J, Zaccai G, de Recondo AM.	Nucleic Acids Res	10.1093/nar/18.3.507	1990
	Structure and sequence divergence of two archaebacterial genes.	Cue D, Beckler GS, Reeve JN, Konisky J.	Proc Natl Acad Sci U S A	10.1073/pnas.82.12.4207	1985
Metabolism	Structural and functional characterization of DUF1471 domains of Salmonella proteins SrfN, YdgH/SssB, and YahO.	Eletsky A, Michalska K, Houliston S, Zhang Q, Daily MD, Xu X, Cui H, Yee A, Lemak A, Wu B, Garcia M, Burnet MC, Meyer KM, Aryal UK, Sanchez O, Ansong C, Xiao R, Acton TB, Adkins JN, Montelione GT, Joachimiak A, Arrowsmith CH, Savchenko A, Szyperski T, Cort JR.	PLoS One	10.1371/journal.pone.0101787	2014
Metabolism	Methanol-dependent gene expression demonstrates that methyl-coenzyme M reductase is essential in Methanosarcina acetivorans C2A and allows isolation of mutants with defects in regulation of the methanol utilization pathway.	Rother M, Boccazzi P, Bose A, Pritchett MA, Metcalf WW.	J Bacteriol	10.1128/jb.187.16.5552-5559.2005	2005
Metabolism	Individual gvp transcript segments in Haloferax mediterranei exhibit varying half-lives, which are differentially affected by salt concentration and growth phase.	Jager A, Samorski R, Pfeifer F, Klug G.	Nucleic Acids Res	10.1093/nar/gkf699	2002
	A comprehensive history of motility and Archaellation in Archaea.	Jarrell KF, Albers SV, Machado JNS.	FEMS Microbes	10.1093/femsmc/xtab002	2021
	Structure and comparative analysis of the genes encoding component C of methyl coenzyme M reductase in the extremely thermophilic archaebacterium Methanothermus fervidus.	Weil CF, Cram DS, Sherf BA, Reeve JN.	J Bacteriol	10.1128/jb.170.10.4718-4726.1988	1988
	Searching for RNA genes using base-composition statistics.	Schattner P.	Nucleic Acids Res	10.1093/nar/30.9.2076	2002
	Protein-coding gene promoters in Methanocaldococcus (Methanococcus) jannaschii.	Zhang J, Li E, Olsen GJ.	Nucleic Acids Res	10.1093/nar/gkp213	2009
Enzymology	Molecular diversity of rumen methanogens from sheep in Western Australia.	Wright AD, Williams AJ, Winder B, Christophersen CT, Rodgers SL, Smith KD.	Appl Environ Microbiol	10.1128/aem.70.3.1263-1270.2004	2004
Genetics	Divergence and redundancy of 16S rRNA sequences in genomes with multiple rrn operons.	Acinas SG, Marcelino LA, Klepac-Ceraj V, Polz MF, Polz MF.	J Bacteriol	10.1128/jb.186.9.2629-2635.2004	2004
	Purine biosynthesis in archaea: variations on a theme.	Brown AM, Hoopes SL, White RH, Sarisky CA.	Biol Direct	10.1186/1745-6150-6-63	2011
	Discovering common stem-loop motifs in unaligned RNA sequences.	Gorodkin J, Stricklin SL, Stormo GD.	Nucleic Acids Res	10.1093/nar/29.10.2135	2001
	Cloning and characterization of the str operon and elongation factor Tu expression in Bacillus stearothermophilus.	Krasny L, Vacik T, Fucik V, Jonak J.	J Bacteriol	10.1128/jb.182.21.6114-6122.2000	2000
Phylogeny	Discontinuous occurrence of the hsp70 (dnaK) gene among Archaea and sequence features of HSP70 suggest a novel outlook on phylogenies inferred from this protein.	Gribaldo S, Lumia V, Creti R, Conway de Macario E, Sanangelantoni A, Cammarano P.	J Bacteriol	10.1128/jb.181.2.434-443.1999	1999
Metabolism	The nif gene operon of the methanogenic archaeon Methanococcus maripaludis.	Kessler PS, Blank C, Leigh JA.	J Bacteriol	10.1128/jb.180.6.1504-1511.1998	1998
Metabolism	Purine salvage in two halophilic archaea: characterization of salvage pathways and isolation of mutants resistant to purine analogs.	Stuer-Lauridsen B, Nygaard P.	J Bacteriol	10.1128/jb.180.3.457-463.1998	1998
Metabolism	Stability of the 'L12 stalk' in ribosomes from mesophilic and (hyper)thermophilic Archaea and Bacteria.	Shcherbakov D, Dontsova M, Tribus M, Garber M, Piendl W.	Nucleic Acids Res	10.1093/nar/gkl751	2006
Metabolism	1-methylguanosine-deficient tRNA of Salmonella enterica serovar Typhimurium affects thiamine metabolism.	Bjork GR, Nilsson K.	J Bacteriol	10.1128/jb.185.3.750-759.2003	2003
Metabolism	Phylogenetic analysis of L4-mediated autogenous control of the S10 ribosomal protein operon.	Allen T, Shen P, Samsel L, Liu R, Lindahl L, Zengel JM.	J Bacteriol	10.1128/jb.181.19.6124-6132.1999	1999
	Studies on the methane fermentation. X. A new formate-decomposing bacterium, Methanococcus vannielii.	STADTMAN TC, BARKER HA.	J Bacteriol	10.1128/jb.62.3.269-280.1951	1951

References

#588	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1224
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Methanococcus vannielii (DSM 1224, ATCC 35089, JCM 13029)

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Genome browser: GCA_000017165

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