Name: Methanococcus vannielii SB
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6993

Type strain:

Species: Methanococcus vannielii

Strain Designation: SB

Culture col. no.: DSM 1224, ATCC 35089, JCM 13029, OCM 148

Strain history: DSM 1224 <-- T. C. Stadtman strain SB.

NCBI tax ID(s): 2187 (species)

SI-ID 44994

ATCC 35089, DSM 1224, JCM 13029

Section

Methanococcus vannielii SB is an anaerobe, mesophilic archaeon that was isolated from marine mud.

anaerobe
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Methanococci*
	Order	*Methanococcales*
	Family	*Methanococcaceae*
	Genus	*Methanococcus*
	Species	**Methanococcus vannielii**
	Full Scientific Name (LPSN)	Methanococcus vannielii Stadtman and Barker 1951 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #588]

Incubation period

2-3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #588]

Culture medium

METHANOGENIUM MEDIUM (H2/CO2) (DSMZ Medium 141)

[Ref.: #588]

Culture medium growth

[Ref.: #588]

Culture medium link

Medium recipe at MediaDive

[Ref.: #588]

Culture medium composition

expand / minimize

[Ref.: #588]

Culture medium

METHANOBACTERIUM MEDIUM (DSMZ Medium 119)

[Ref.: #588]

Culture medium growth

[Ref.: #588]

Culture medium link

Medium recipe at MediaDive

[Ref.: #588]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #588]			growth	35 °C
[Ref.: #67770]			growth	35 °C

[Ref.: #588]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #588]

Oxygen tolerance

anaerobe

[Ref.: #588]	Name of produced compound	formate dehydrogenase
[Ref.: #588]	Name of produced compound	restriction endonuclease MvnI

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #588]	Sample type/isolated from	marine mud
[Ref.: #588]	Geographic location (country and/or sea, region)	San Francisco Bay
[Ref.: #588]	Country	USA
[Ref.: #588]	Country ISO 3 Code	USA
[Ref.: #588]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Black mud from the east shore of San Francisco Bay
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence NR_074175 (>99% sequence identity) for Methanococcus vannielii subclade from Microbeatlas

Aquatic Samples	101
Soil Samples	3
Animal Samples	2
Plant Samples
Total Samples	106

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #588]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #588]	Methanococcus vannielii strain SB 16S ribosomal RNA, complete sequence	NR_074175	1465	GenBank	2187 tax ID
[Ref.: #67770]	Methanococcus vannielii 16S ribosomal RNA gene, partial sequence	AY196675	1257	ENA	2187 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methanococcus vannielii SB	GCA_000017165	complete	GenBank	406327 tax ID	*
[Ref.: #66792]	Methanococcus vannielii SB	640753036	complete	JGI IMG/M	406327 tax ID	*
[Ref.: #66792]	Methanococcus vannielii SB	406327.12	complete	PATRIC	406327 tax ID	*

[Ref.: #588]

GC-content

31.3 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methanococcus vannielii SB SB NCBI: GCA_000017165.1
[Ref.: #69480]	motile	no	88.893	no
[Ref.: #69480]	flagellated	no	96.075	no
[Ref.: #69480]	gram-positive	no	96.284	no
[Ref.: #69480]	anaerobic	yes	98.98	yes
[Ref.: #69480]	halophile	no	77.489	no
[Ref.: #69480]	spore-forming	no	95.456	no
[Ref.: #69480]	glucose-util	yes	67.423	no
[Ref.: #69480]	aerobic	no	95.892	yes
[Ref.: #69480]	thermophile	yes	60.418	no
[Ref.: #69480]	glucose-ferment	no	62.931	no

Availability in culture collections External links

[Ref.: #588]

Culture collection no.

DSM 1224, ATCC 35089, JCM 13029, OCM 148

[Ref.: #76454]

SI-ID 44994

References

#588	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1224

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#76454

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID44994.1 )

* These data were automatically processed and therefore are not curated

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Methanococcus vannielii SB SB

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