Name: Methanococcus maripaludis LL
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6991

Type strain:

Species: Methanococcus maripaludis

Strain Designation: LL, S2

Culture col. no.: DSM 14266, JCM 13030, NBRC 101832

Strain history: DSM 14266 <-- J. A. Leigh <-- W. B. Witman S2.

NCBI tax ID(s): 39152 (species)

SI-ID 49551

DSM 14266, JCM 13030, NBRC 101832

Special Collections

DSMZ
JCM

Other strains from Methanococcus maripaludis

Section

Methanococcus maripaludis LL is an anaerobe, Gram-negative archaeon that was isolated from salt marsh and intertidal sediments.

Gram-negative
anaerobe
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Methanococci*
	Order	*Methanococcales*
	Family	*Methanococcaceae*
	Genus	*Methanococcus*
	Species	**Methanococcus maripaludis**
	Full Scientific Name (LPSN)	Methanococcus maripaludis Jones et al. 1984

Synonym

Methanococcus deltae

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5291]

Culture medium

METHANOGENIUM MEDIUM (H2/CO2) (DSMZ Medium 141)

[Ref.: #5291]

Culture medium growth

[Ref.: #5291]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5291]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5291]			growth	37 °C
[Ref.: #67770]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #5291]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5291]	Sample type/isolated from	salt marsh and intertidal sediments
[Ref.: #5291]	Geographic location (country and/or sea, region)	Southeastern United States
[Ref.: #5291]	Country	USA
[Ref.: #5291]	Country ISO 3 Code	USA
[Ref.: #5291]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Sediment on the bank of the Latham River
[Ref.: #67770]	Geographic location (country and/or sea, region)	near Jekyll Island, GA
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Salt marsh
#Environmental	#Terrestrial	#Tidal flat
#Condition	#Saline	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF005049 (>99% sequence identity) for Methanococcus from Microbeatlas

Aquatic Samples	93
Soil Samples	9
Animal Samples	118
Plant Samples
Total Samples	220

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5291]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5291]	Methanococcus maripaludis 16S ribosomal RNA gene, complete sequence	AF005049	1392	GenBank ENA	39152 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methanococcus maripaludis S2	GCA_000011585	complete	GenBank ENA	267377 tax ID	*
[Ref.: #66792]	Methanococcus maripaludis S2	2563366543	complete	JGI IMG/M	267377 tax ID	*
[Ref.: #66792]	Methanococcus maripaludis S2	267377.15	complete	PATRIC	267377 tax ID	*

[Ref.: #67770]

GC-content

34.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methanococcus maripaludis S2 S2 NCBI: GCA_000011585.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	65.371	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	88.818	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	88.474	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.571	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	71.963	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	83.5	no

Availability in culture collections External links

[Ref.: #5291]

Culture collection no.

DSM 14266, JCM 13030, NBRC 101832

[Ref.: #76452]

SI-ID 49551

References

#5291

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14266

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#76452

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49551.1 )

* These data were automatically processed and therefore are not curated

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Methanococcus maripaludis S2 S2

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