Name: Methanobrevibacter gottschalkii HO
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6973

Type strain:

Species: Methanobrevibacter gottschalkii

Strain Designation: HO

Culture col. no.: DSM 11977, OCM 813

Strain history: <- T. L. Miller, New York State Department of Health, Albany, New York, USA; HO <- T. L. Miller {1983}

NCBI tax ID(s): 1122229 (strain), 190974 (species)

SI-ID 49212

DSM 11977, ATCC BAA-1169

Other strains from Methanobrevibacter gottschalkii

M. gottschalkii PG, DSM 11978

Section

Methanobrevibacter gottschalkii HO is an anaerobe, mesophilic, Gram-negative archaeon that was isolated from horse faeces.

Gram-negative
anaerobe
mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Methanobacteria*
	Order	*Methanobacteriales*
	Family	*Methanobacteriaceae*
	Genus	*Methanobrevibacter*
	Species	**Methanobrevibacter gottschalkii**
	Full Scientific Name (LPSN)	Methanobrevibacter gottschalkii Miller and Lin 2002

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.794

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4565]

Culture medium

MODIFIED METHANOBACTERIUM MEDIUM (DSMZ Medium 1523)

[Ref.: #4565]

Culture medium growth

[Ref.: #4565]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4565]

Culture medium composition

expand / minimize

[Ref.: #4565]

Culture medium

METHANOBACTERIUM MEDIUM (DSMZ Medium 119)

[Ref.: #4565]

Culture medium growth

[Ref.: #4565]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4565]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4565]			growth	37 °C

[Ref.: #4565]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #4565]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %97.794

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.962

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4565]	Sample type/isolated from	horse faeces
[Ref.: #4565]	Country	USA
[Ref.: #4565]	Country ISO 3 Code	USA
[Ref.: #4565]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Equidae (Horse)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4565]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4565]	Methanobrevibacter gottschalkii strain HO 16S ribosomal RNA gene, complete sequence	U55238	1328	ENA	190974 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Methanobrevibacter gottschalkii DSM 11977	GCA_003814835	scaffold	GenBank	1122229 tax ID	*
[Ref.: #66792]	Methanobrevibacter gottschalkii DSM 11977	2786546169	draft	JGI IMG/M	190974 tax ID	*
[Ref.: #66792]	Methanobrevibacter gottschalkii DSM 11977	2622736425	draft	JGI IMG/M	190974 tax ID	*
[Ref.: #66792]	Methanobrevibacter gottschalkii DSM 11977	1122229.3	wgs	PATRIC	1122229 tax ID	*

[Ref.: #4565]

GC-content

29.2 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Methanobrevibacter gottschalkii DSM 11977 DSM 11977 NCBI: GCA_003814835.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Methanobrevibacter gottschalkii DSM 11977 DSM 11977 NCBI: GCA_003814835.1
[Ref.: #69480]	motile	no	92.438	no
[Ref.: #69480]	flagellated	no	96.748	no
[Ref.: #69480]	gram-positive	no	94.12	no
[Ref.: #69480]	anaerobic	yes	98.173	yes
[Ref.: #69480]	aerobic	no	95.034	yes
[Ref.: #69480]	halophile	no	83.831	no
[Ref.: #69480]	spore-forming	no	94.645	no
[Ref.: #69480]	thermophile	no	97.891	yes
[Ref.: #69480]	glucose-util	yes	62.217	no
[Ref.: #69480]	glucose-ferment	no	53.696	no

Availability in culture collections External links

[Ref.: #4565]

Culture collection no.

DSM 11977, OCM 813

[Ref.: #76435]

SI-ID 49212

References

#4565

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11977

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76435

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49212.1 )

* These data were automatically processed and therefore are not curated

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Methanobrevibacter gottschalkii DSM 11977 DSM 11977

Methanobrevibacter gottschalkii DSM 11977 DSM 11977

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