Methanobrevibacter smithii (DSM 861, ATCC 35061, JCM 30028)

Name: Methanobrevibacter smithii (DSM 861, ATCC 35061, JCM 30028)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6963

Type strain

Strain Designation PS

Culture col. no. DSM 861 ATCC 35061 JCM 30028 PS OCM 144

NCBI tax ID(s) 420247 2173

Special Collections DSMZ JCM

History <- M. P. Bryant, University of Illinois, Departments of Dairy Science and Microbiology, Urbana, USA; PS <- P. H. Smith, University of California, Davis (Methanobacterium ruminantium) {1964} DSM 861 <-- M. P. Bryant <-- P. H. Smith strain PS.

Links

Methanobrevibacter smithii PS is an anaerobe, mesophilic prokaryote that was isolated from primary sewage digester.

anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 40847

JCM 30028,ATCC 35061,DSM 861

@ref 20215

Last LPSN update 2026-02-09 11:19:21

Domain Archaea

Phylum Methanobacteriota

Class Methanobacteria

Order Methanobacteriales

Family Methanobacteriaceae

Genus Methanobrevibacter

Species Methanobrevibacter smithii

Full scientific name Methanobrevibacter smithii Balch and Wolfe 1981

Synonyms (1)

"Methanocatella smithii"

BacDive ID	Other strains from **Methanobrevibacter smithii** (3)	Type strain
6964	M. smithii F1, DSM 2374
6965	M. smithii ALI, DSM 2375
6966	M. smithii B181, DSM 11975

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.7

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
464	MODIFIED METHANOBACTERIUM MEDIUM (DSMZ Medium 1523)		Medium recipe at MediaDive	Name: MODIFIED METHANOBACTERIUM MEDIUM (DSMZ Medium 1523) Composition: Brain heart infusion 5.98802 g/l Proteose peptone 5.98802 g/l NaHCO3 3.99202 g/l Yeast extract 1.99601 g/l Na-formate 1.99601 g/l Na-acetate 0.998004 g/l Na2S x 9 H2O 0.499002 g/l KH2PO4 0.499002 g/l L-Cysteine HCl x H2O 0.499002 g/l MgSO4 x 7 H2O 0.399202 g/l NH4Cl 0.399202 g/l NaCl 0.399202 g/l CaCl2 x 2 H2O 0.0499002 g/l HCl 0.00249501 g/l FeCl2 x 4 H2O 0.00149701 g/l Sodium resazurin 0.000499002 g/l Pyridoxine hydrochloride 0.000299401 g/l Thiamine-HCl x 2 H2O 0.000199601 g/l Nicotinic acid 0.000199601 g/l CoCl2 x 6 H2O 0.000189621 g/l Calcium pantothenate 9.98004e-05 g/l Vitamin B12 9.98004e-05 g/l MnCl2 x 4 H2O 9.98004e-05 g/l p-Aminobenzoic acid 7.98403e-05 g/l ZnCl2 6.98603e-05 g/l Na2MoO4 x 2 H2O 3.59281e-05 g/l NiCl2 x 6 H2O 2.39521e-05 g/l D-(+)-biotin 1.99601e-05 g/l H3BO3 5.98802e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Distilled water
464	METHANOBACTERIUM MEDIUM (DSMZ Medium 119)		Medium recipe at MediaDive	Name: METHANOBACTERIUM MEDIUM (DSMZ Medium 119) Composition: NaHCO3 3.98804 g/l Na-formate 1.99402 g/l Na-acetate 0.997009 g/l Na2S x 9 H2O 0.498504 g/l L-Cysteine HCl x H2O 0.498504 g/l KH2PO4 0.498504 g/l NH4Cl 0.398804 g/l NaCl 0.398804 g/l MgSO4 x 7 H2O 0.398804 g/l Yeast extract 0.199402 g/l CaCl2 x 2 H2O 0.0498504 g/l HCl 0.00249252 g/l FeSO4 x 7 H2O 0.00199402 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l H3BO3 5.98205e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Isobutyric acid DL-2-Methylbutyric acid Valeric acid Isovaleric acid H2SO4 Sludge Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
464	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

464

Oxygen toleranceanaerobe

Spore formation

@ref	Spore formation	Confidence
125439		99.2
125438		92.647

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Waste	#Wastewater

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
464	primary sewage digester	Florida, Gainesville	USA	USA	North America
67770	Primary sewage digester	Gainesville, FL	USA	USA	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
464	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1652v1 assembly for Methanobrevibacter smithii ATCC 35061 ATCC 35061; PS; DSMZ 861	complete	GCA_000016525	420247.28	640427121	420247	98.14
66792	ASM2874343v1 assembly for Methanobrevibacter smithii ATCC 35061 DSM 861	complete	GCA_028743435		8118567547	420247	97.31

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Methanobrevibacter smithii ATCC 35061 culture DSM:861 16S ribosomal RNA gene, partial sequence	JQ346750	1268		420247
124043	Methanobrevibacter smithii ATCC 35061 16S ribosomal RNA gene, complete sequence.	U55233	1343		420247

GC content

464

GC-content (mol%)31.0

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Methanobrevibacter smithii ATCC 35061 ATCC 35061; PS; DSMZ 861
NCBI: GCA_000016525

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.20	no
125439	motility	BacteriaNetⓘ	no	57.70	no
125439	gram_stain	BacteriaNetⓘ	negative	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	68.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Methanobrevibacter smithii ATCC 35061
NCBI: GCA_000016525.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	56.63	no
125438	anaerobic	anaerobicⓘ	yes	89.37	yes
125438	aerobic	aerobicⓘ	no	88.44	yes
125438	spore-forming	spore-formingⓘ	no	92.65	no
125438	thermophilic	thermophileⓘ	no	82.25	yes
125438	flagellated	motile2+ⓘ	no	84.21	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Effects of fecal microbiota transplantation on the abundance and diversity of selected fungal and archaeal species in the gut microbiota in the rat model of schizophrenia.	Krawczyk A, Kasperski T, Gosiewski T, Nikiforuk A, Potasiewicz A, Arent Z, Salamon D.	Pharmacol Rep	10.1007/s43440-025-00793-8	2025
	Biogenesis of DNA-carrying extracellular vesicles by the dominant human gut methanogenic archaeon	Baquero D, Borrel G, Gazi A, Martin-Gallausiaux C, Cvirkaite-Krupovic V, Commere P, Pende N, Tachon S, Sartori-Rupp A, Douche T, Matondo M, Gribaldo S, Krupovic M.	Nat Commun		2025
Phylogeny	Quantitative profiling of bacterial communities via full length 16S rRNA gene sequencing with internal controls: optimization and validation across diverse human microbiomes.	Valido E, Bertolo A, Stoyanov J.	BMC Microbiol	10.1186/s12866-025-04399-1	2025
	Methanobrevibacter smithii cell variants in human physiology and pathology: A review.	Malat I, Drancourt M, Grine G.	Heliyon	10.1016/j.heliyon.2024.e36742	2024
	Stable coexistence between an archaeal virus and the dominant methanogen of the human gut.	Baquero DP, Medvedeva S, Martin-Gallausiaux C, Pende N, Sartori-Rupp A, Tachon S, Pedron T, Debarbieux L, Borrel G, Gribaldo S, Krupovic M.	Nat Commun	10.1038/s41467-024-51946-x	2024
Metabolism	Rumen microbial degradation of bromoform from red seaweed (Asparagopsis taxiformis) and the impact on rumen fermentation and methanogenic archaea.	Romero P, Belanche A, Jimenez E, Hueso R, Ramos-Morales E, Salwen JK, Kebreab E, Yanez-Ruiz DR.	J Anim Sci Biotechnol	10.1186/s40104-023-00935-z	2023
	Proteomic and metabolomic profiling of extracellular vesicles produced by human gut archaea	Weinberger V, Darnhofer B, Thapa H, Mertelj P, Stentz R, Jones E, Grabmann G, Mohammadzadeh R, Shinde T, Karner C, Ober J, Juodeikis R, Pernitsch D, Hingerl K, Zurabishvili T, Kumpitsch C, Kuehnast T, Rinner B, Strohmaier H, Kolb D, Gotts K, Weichhart T, Kocher T, Kofeler H, Carding S, Schild S, Moissl-Eichinger C.	Nat Commun		2025
Enzymology	Structure/activity virtual screening and in vitro testing of small molecule inhibitors of 8-hydroxy-5-deazaflavin:NADPH oxidoreductase from gut methanogenic bacteria.	Cuccioloni M, Bonfili L, Cecarini V, Cocchioni F, Petrelli D, Crotti E, Zanchi R, Eleuteri AM, Angeletti M.	Sci Rep	10.1038/s41598-020-70042-w	2020
	Methanogen Levels Are Significantly Associated with Fecal Microbiota Composition and Alpha Diversity in Healthy Adults and Irritable Bowel Syndrome Patients.	Wang T, van Dijk L, Rijnaarts I, Hermes GDA, de Roos NM, Witteman BJM, de Wit NJW, Govers C, Smidt H, Zoetendal EG.	Microbiol Spectr	10.1128/spectrum.01653-22	2022
	Oral amoxicillin treatment disrupts the gut microbiome and metabolome without interfering with luminal redox potential in the intestine of Wistar Han rats.	Bermudez-Sanchez S, Bahl MI, Hansen EB, Licht TR, Laursen MF.	FEMS Microbiol Ecol	10.1093/femsec/fiaf003	2025
Genetics	Genomic and transcriptomic characterization of carbohydrate-active enzymes in the anaerobic fungus Neocallimastix cameroonii var. constans.	Blair EM, Navaratna TA, Ahern CB, Ragunathan R, Brown JL, Mondo SJ, Lipzen A, Hanafy RA, LaButti K, Talag J, Barry K, Chovatia M, Wang M, Gonzalez J, Peng X, Grigoriev IV, O'Malley MA.	G3 (Bethesda)	10.1093/g3journal/jkaf137	2025
	Risk factors for type 1 diabetes, including environmental, behavioural and gut microbial factors: a case-control study.	Traversi D, Rabbone I, Scaioli G, Vallini C, Carletto G, Racca I, Ala U, Durazzo M, Collo A, Ferro A, Carrera D, Savastio S, Cadario F, Siliquini R, Cerutti F.	Sci Rep	10.1038/s41598-020-74678-6	2020
	Evolving understanding of rumen methanogen ecophysiology.	Khairunisa BH, Heryakusuma C, Ike K, Mukhopadhyay B, Susanti D.	Front Microbiol	10.3389/fmicb.2023.1296008	2023
	Alterations in intestinal Archaea composition in pediatric patients with Crohn's disease based on next-generation sequencing - a pilot study.	Krawczyk A, Gosiewski T, Zapala B, Kowalska-Duplaga K, Salamon D.	Gut Microbes	10.1080/19490976.2023.2276806	2023
	The streptothricin acetyltransferase (sat) gene as a positive selectable marker for methanogenic archaea.	Farley KR, Metcalf WW.	FEMS Microbiol Lett	10.1093/femsle/fnz216	2019
Enzymology	Culture of Methanogenic Archaea from Human Colostrum and Milk.	Togo AH, Grine G, Khelaifia S, des Robert C, Brevaut V, Caputo A, Baptiste E, Bonnet M, Levasseur A, Drancourt M, Million M, Raoult D.	Sci Rep	10.1038/s41598-019-54759-x	2019
	Biofilm formation of mucosa-associated methanoarchaeal strains.	Bang C, Ehlers C, Orell A, Prasse D, Spinner M, Gorb SN, Albers SV, Schmitz RA.	Front Microbiol	10.3389/fmicb.2014.00353	2014
Metabolism	Syntrophy via Interspecies H₂ Transfer between Christensenella and Methanobrevibacter Underlies Their Global Cooccurrence in the Human Gut.	Ruaud A, Esquivel-Elizondo S, de la Cuesta-Zuluaga J, Waters JL, Angenent LT, Youngblut ND, Ley RE.	mBio	10.1128/mbio.03235-19	2020
Metabolism	SepF is the FtsZ anchor in archaea, with features of an ancestral cell division system.	Pende N, Sogues A, Megrian D, Sartori-Rupp A, England P, Palabikyan H, Rittmann SKR, Grana M, Wehenkel AM, Alzari PM, Gribaldo S.	Nat Commun	10.1038/s41467-021-23099-8	2021
	Association of Fungi and Archaea of the Gut Microbiota with Crohn's Disease in Pediatric Patients-Pilot Study.	Krawczyk A, Salamon D, Kowalska-Duplaga K, Bogiel T, Gosiewski T.	Pathogens	10.3390/pathogens10091119	2021
Pathogenicity	Phenylketonuria Diet Promotes Shifts in Firmicutes Populations.	Bassanini G, Ceccarani C, Borgo F, Severgnini M, Rovelli V, Morace G, Verduci E, Borghi E.	Front Cell Infect Microbiol	10.3389/fcimb.2019.00101	2019
Pathogenicity	Lovastatin in Aspergillus terreus: fermented rice straw extracts interferes with methane production and gene expression in Methanobrevibacter smithii.	Faseleh Jahromi M, Liang JB, Ho YW, Mohamad R, Goh YM, Shokryazdan P, Chin J.	Biomed Res Int	10.1155/2013/604721	2013
	The intestinal archaea Methanosphaera stadtmanae and Methanobrevibacter smithii activate human dendritic cells.	Bang C, Weidenbach K, Gutsmann T, Heine H, Schmitz RA.	PLoS One	10.1371/journal.pone.0099411	2014
	Abundance and Diversity of Hydrogenotrophic Microorganisms in the Infant Gut before the Weaning Period Assessed by Denaturing Gradient Gel Electrophoresis and Quantitative PCR.	Sagheddu V, Patrone V, Miragoli F, Morelli L.	Front Nutr	10.3389/fnut.2017.00029	2017
Metabolism	Phylotype-Level Profiling of Lactobacilli in Highly Complex Environments by Means of an Internal Transcribed Spacer-Based Metagenomic Approach.	Milani C, Duranti S, Mangifesta M, Lugli GA, Turroni F, Mancabelli L, Viappiani A, Anzalone R, Alessandri G, Ossiprandi MC, van Sinderen D, Ventura M.	Appl Environ Microbiol	10.1128/aem.00706-18	2018
	Microbiota in anorexia nervosa: The triangle between bacterial species, metabolites and psychological tests.	Borgo F, Riva A, Benetti A, Casiraghi MC, Bertelli S, Garbossa S, Anselmetti S, Scarone S, Pontiroli AE, Morace G, Borghi E.	PLoS One	10.1371/journal.pone.0179739	2017
Metabolism	Hydrogenotrophic methanogens of the mammalian gut: Functionally similar, thermodynamically different-A modelling approach.	Munoz-Tamayo R, Popova M, Tillier M, Morgavi DP, Morel JP, Fonty G, Morel-Desrosiers N.	PLoS One	10.1371/journal.pone.0226243	2019
	Methane Production in Dairy Cows Correlates with Rumen Methanogenic and Bacterial Community Structure.	Danielsson R, Dicksved J, Sun L, Gonda H, Muller B, Schnurer A, Bertilsson J.	Front Microbiol	10.3389/fmicb.2017.00226	2017
Metabolism	Biologic activity and biotechnological development of natural products.	Carvalho JC, Perazzo FF, Machado L, Bereau D.	Biomed Res Int	10.1155/2013/971745	2013
Pathogenicity	Effect of the standard herbal preparation, STW5, treatment on dysbiosis induced by dextran sodium sulfate in experimental colitis.	Mohamed SS, Abdeltawab NF, Wadie W, Ahmed LA, Ammar RM, Rabini S, Abdel-Aziz H, Khayyal MT.	BMC Complement Med Ther	10.1186/s12906-021-03337-8	2021
Enzymology	The smallest active carbamoyl phosphate synthetase was identified in the human gut archaeon Methanobrevibacter smithii.	Popa E, Perera N, Kibedi-Szabo CZ, Guy-Evans H, Evans DR, Purcarea C.	J Mol Microbiol Biotechnol	10.1159/000342520	2012
Metabolism	Insights into the lifestyle of uncultured bacterial natural product factories associated with marine sponges.	Lackner G, Peters EE, Helfrich EJ, Piel J.	Proc Natl Acad Sci U S A	10.1073/pnas.1616234114	2017
	Inhibition of Rumen Methanogens by a Novel Archaeal Lytic Enzyme Displayed on Tailored Bionanoparticles.	Altermann E, Schofield LR, Ronimus RS, Beatty AK, Reilly K.	Front Microbiol	10.3389/fmicb.2018.02378	2018
Metabolism	Archaea and the human gut: new beginning of an old story.	Gaci N, Borrel G, Tottey W, O'Toole PW, Brugere JF.	World J Gastroenterol	10.3748/wjg.v20.i43.16062	2014
Metabolism	Biochemical Characterisation of Phage Pseudomurein Endoisopeptidases PeiW and PeiP Using Synthetic Peptides.	Schofield LR, Beattie AK, Tootill CM, Dey D, Ronimus RS.	Archaea	10.1155/2015/828693	2015
	Assessing the fecal microbiota: an optimized ion torrent 16S rRNA gene-based analysis protocol.	Milani C, Hevia A, Foroni E, Duranti S, Turroni F, Lugli GA, Sanchez B, Martin R, Gueimonde M, van Sinderen D, Margolles A, Ventura M.	PLoS One	10.1371/journal.pone.0068739	2013
Pathogenicity	Effects of antimicrobial peptides on methanogenic archaea.	Bang C, Schilhabel A, Weidenbach K, Kopp A, Goldmann T, Gutsmann T, Schmitz RA.	Antimicrob Agents Chemother	10.1128/aac.00661-12	2012
Metabolism	Development and Validation of Broad-Range Qualitative and Clade-Specific Quantitative Molecular Probes for Assessing Mercury Methylation in the Environment.	Christensen GA, Wymore AM, King AJ, Podar M, Hurt RA, Santillan EU, Soren A, Brandt CC, Brown SD, Palumbo AV, Wall JD, Gilmour CC, Elias DA.	Appl Environ Microbiol	10.1128/aem.01271-16	2016
Metabolism	Diet-induced alterations in total and metabolically active microbes within the rumen of dairy cows.	Lettat A, Benchaar C.	PLoS One	10.1371/journal.pone.0060978	2013
Metabolism	Effect of propionate toxicity on methanogen-enriched sludge, Methanobrevibacter smithii, and Methanospirillum hungatii at different pH values.	Barredo MS, Evison LM.	Appl Environ Microbiol	10.1128/aem.57.6.1764-1769.1991	1991
Phylogeny	An antimethanogenic nutritional intervention in early life of ruminants modifies ruminal colonization by Archaea.	Abecia L, Waddams KE, Martinez-Fernandez G, Martin-Garcia AI, Ramos-Morales E, Newbold CJ, Yanez-Ruiz DR.	Archaea	10.1155/2014/841463	2014
Metabolism	Tracking heavy water (D2O) incorporation for identifying and sorting active microbial cells.	Berry D, Mader E, Lee TK, Woebken D, Wang Y, Zhu D, Palatinszky M, Schintlmeister A, Schmid MC, Hanson BT, Shterzer N, Mizrahi I, Rauch I, Decker T, Bocklitz T, Popp J, Gibson CM, Fowler PW, Huang WE, Wagner M.	Proc Natl Acad Sci U S A	10.1073/pnas.1420406112	2015
Phylogeny	Application of denaturing high-performance liquid chromatography in microbial ecology: fermentor sludge, compost, and soil community profiling.	Wagner AO, Malin C, Illmer P.	Appl Environ Microbiol	10.1128/aem.01411-08	2009
	Anaerobic Degradation of Lactate by Syntrophic Associations of Methanosarcina barkeri and Desulfovibrio Species and Effect of H(2) on Acetate Degradation.	McInerney MJ, Bryant MP.	Appl Environ Microbiol	10.1128/aem.41.2.346-354.1981	1981
Metabolism	Degradation of barley straw, ryegrass, and alfalfa cell walls by Clostridium longisporum and Ruminococcus albus.	Varel VH, Richardson AJ, Stewart CS.	Appl Environ Microbiol	10.1128/aem.55.12.3080-3084.1989	1989
	Detection and quantitation of methanogens by enzyme-linked immunosorbent assay.	Archer DB.	Appl Environ Microbiol	10.1128/aem.48.4.797-801.1984	1984
Phylogeny	Methanogens: reevaluation of a unique biological group.	Balch WE, Fox GE, Magrum LJ, Woese CR, Wolfe RS.	Microbiol Rev	10.1128/mr.43.2.260-296.1979	1979
Genetics	Methanobrevibacter smithii strain U29 whole genome sequence delineates M. smithii intermediate cell variants.	Malat I, Bossi V, Drancourt M, Grine G, Ruimy R.	BMC Res Notes	10.1186/s13104-025-07444-4	2025
	Untargeted Metabolomic Study on the Mechanism of Polygonatum sibiricum in Non-Alcoholic Fatty Liver Disease in Rats Using UPLC-Q-TOF/MS.	Li X, Cui F, Tang S, Li P, Xu Y, Li H, Sun Y, Wang Y, Zhang M, Ma R, Li X, Wang Y, Xu H, Zhang H, Wang Z.	Biomed Chromatogr	10.1002/bmc.70269	2025
	UPLC-Q/TOF-MS-Based Serum Metabolomics Reveals the Potential Antihyperglycemic Mechanisms of Polygonatum sibiricum in KK/Upj-A^y Type 2 Diabetic Mice.	Li H, Tang S, Huang J, Sun Y, Xu Y, Wang Y, Li X, Zhang M, Ma R, Li X, Xu H, Zhang H, Wang Z.	Biomed Chromatogr	10.1002/bmc.70177	2025
	Hybrid lineage of Puccinia striiformis overlapping on wheat, barley and wild barley hosts in Uzbekistan, Central Asia.	Awais M, Zhao J, Turakulov KS, Egamberdieva D, Karimjonovich MS, Ali S, Li L, Kang Z, Ma J.	Plant Dis	10.1094/pdis-06-25-1317-re	2025
	Interaction Between Different Amoebae and Pseudomonas sp. Impacts Rice Plant Growth and Phosphorus Dynamics.	Chandarana KA, Manoharadas S, Tiruvengadam M, Amaresan N.	Curr Microbiol	10.1007/s00284-025-04359-y	2025
	Metabolomics combined with network pharmacology reveals the anti-hepatoma effects of terpenoids from Polygonatum kingianum var. grandifolium and Polygonatum sibiricum Redouté as well as differences in their terpenoid metabolites.	Wang X, Wan X, Zhu T, Cui L, Xiao Q.	BMC Plant Biol	10.1186/s12870-025-06807-0	2025
	Ricotta cheese quality as affected by season.	Mangione G, Musati M, Caccamo M, Bertino A, Mangano F, Cannone MS, Luciano G, Priolo A, Natalello A.	J Dairy Sci	10.3168/jds.2025-26448	2025
	Drought affects Fe deficiency-induced responses in a purple durum wheat (Triticum turgidum subsp. durum) genotype.	Quagliata G, Molina MDG, Mannino G, Coppa E, Saidi MN, Palombieri S, Sestili F, Vigani G, Astolfi S.	Plant Biol (Stuttg)	10.1111/plb.70012	2025
	Identification of Bacteria Isolated From Leaves of American Beech, Fagus grandifolia, Infested by the Foliar Nematode, Litylenchus crenatae (Nematoda: Anguinoidea), in New York, USA	Albu S, Starodumova IP, Dorofeeva LV, Evtushenko LI, Subbotin SA.	For Pathol		2025
Pathogenicity	The protective effects and mechanisms of Polygonatum sibiricum polysaccharides in chronic stress-induced neural damage.	Zhang X, Wang D, Liu Y, Sun J, Fan B, Wang F, Lu C.	J Ethnopharmacol	10.1016/j.jep.2025.120219	2025
	New crop, new pest, old ants: Crop colonisation by native ants disrupt biological control of an invasive mealybug in Mediterranean persimmon	Plata A, Gomez-Martinez MA, Beitia FJ, Tena A.	Ecol Entomol		2025
	Autoregulation of the Master Regulator Spo0A Controls Cell-Fate Decisions in Bacillus subtilis.	Zarazua-Osorio B, Srivastava P, Marathe A, Zahid SH, Fujita M.	Mol Microbiol	10.1111/mmi.15341	2025
	Acrylamide mitigation in foods using recombinant L-asparaginase: An extremozyme from Himalayan Pseudomonas sp. PCH182	Patial V, Kumar V, Joshi R, Gupta M, Singh D.	Food Research International.		2024
	Isolation, purification and comparison of soluble active substances from four peony roots	Yang J, Huang Z, Zheng X, Zhang N, Liu Y.	Industrial crops and products.		2024
	Soil labile organic carbon and nitrate nitrogen are the main factors driving carbon-fixing pathways during vegetation restoration in the Loess Plateau, China	Liang Y, Fu R, Sailike A, Hao H, Yu Z, Wang R, Peng N, Li S, Zhang W, Liu Y.	Agriculture, ecosystems and environment.	10.1016/j.agee.2024.109283	2025
Pathogenicity	A typical NLR recognizes a family of structurally conserved effectors to confer plant resistance against adapted and non-adapted Phytophthora pathogens.	Dong X, Lu X, Zhu H, Zhu Z, Ji P, Li X, Li T, Zhang X, Ai G, Dou D.	Mol Plant	10.1016/j.molp.2025.01.018	2025
	Deciphering Pseudoendocrine Sarcoma: A Clinicopathological, Molecular, and Epigenetic Study Suggesting Biological Links With Solid Pseudopapillary Neoplasm of the Pancreas.	Fernandez-Perez J, Pommepuy I, Michal M, Michal M, Cleven AHG, Bouvier C, Gomez-Brouchet A, Weingertner N, Papke DJ, Jo VY, Garcia J, Agaimy A, Azmani R, Bourdon A, Hostein I, Soubeyran I, Alame M, Velasco V, Coindre JM, Le Loarer F, Perret RE.	Mod Pathol	10.1016/j.modpat.2025.100810	2025
	Circulation aspects of phlebotomines (Diptera: Psychodidae) and their potential implications in the transmission of American cutaneous leishmaniasis within Nova Vida settlement in the municipality of Ulianópolis, Pará State, Brazil.	Rodrigues AC, Ishikawa EAY, Dos Santos TV.	J Parasit Dis	10.1007/s12639-025-01779-2	2025
	Soil moisture and texture mediating the micro(nano)plastics absorption and growth of lettuce in natural soil conditions.	Wang J, Zhang S, Xing H, Yan P, Wang J.	J Hazard Mater	10.1016/j.jhazmat.2024.136575	2025
	Nitrous oxide and methane fluxes from plasma-treated pig slurry applied to winter wheat	Lloyd IL, Grayson RP, Galdos MV, Morrison R, Chapman PJ.	Nutr Cycl Agroecosyst	10.1007/s10705-024-10363-8	2024
	Association of Leukocyte Telomere Length and the Risk of Disease Severity and Metabolic Comorbidities in Arab Patients with Psoriasis.	Alwehaidah MS, Bakhiet M.	Cytogenet Genome Res	10.1159/000542323	2024
	Unveiling the biocontrol potential of Pseudomonas syringae through seed biopriming against charcoal rot disease in maize	Ahmed MJ, Shoaib A.	Physiol Mol Plant Pathol		2024
	Investigating the link between Helicobacter pylori infection and psoriatic disease: an immunological study.	Patrikiou E, Efthymiou G, Liaskos C, Ntavari N, Scheper T, Meyer W, Simopoulou T, Dardiotis E, Roussaki-Schulze AV, Zafiriou E, Bogdanos DP, Sakkas LI.	Immunol Res	10.1007/s12026-024-09569-3	2024
	Adsorption and biodegradation of butyl xanthate in mine water by Pseudomonas sp. immobilized on yak dung biochar.	Shan T, Wang B, Tu W, Huang F, Yang W, Xiang M, Luo X.	Environ Res	10.1016/j.envres.2024.120300	2025
Pathogenicity	Modulation of Plet1 expression by N-Acetylglucosamine through the IL-17 A-MAPK pathway in an imiquimod-induced psoriasis mouse model.	Selvakumar B, Rah B, Jagal J, Sekar P, Moustafa R, Ramakrishnan RK, Haider M, Ibrahim SM, Samsudin R.	Inflamm Res	10.1007/s00011-024-01958-6	2024
	3D Printing of Biocompatible and Antibacterial Silica-Silk-Chitosan-Based Hybrid Aerogel Scaffolds Loaded with Propolis.	Vaseghi A, Sadeghizadeh M, Herb M, Grumme D, Demidov Y, Remmler T, Maleki HH.	ACS Appl Bio Mater	10.1021/acsabm.4c00697	2024
	Antitumor activity of Polygonatum sibiricum polysaccharides.	Lai W, Ning Q, Wang G, Gao Y, Liao S, Tang S.	Arch Pharm Res	10.1007/s12272-024-01511-3	2024
	Exploring casual effects and shared molecular mechanism between psoriasis and liver cancer through Mendelian randomization and comprehensive bioinformatic analyses.	Ran M, Sha O, Tam KY.	Comput Biol Chem	10.1016/j.compbiolchem.2024.108089	2024
	Differential effects of polystyrene microplastics on the adsorption of cadmium and ciprofloxacin by tea leaf litter-derived magnetic biochar: Influencing factors and mechanisms.	Gong X, Chen R, Shi G, Sun H, Yang Y, Liang Y, Qin P, Yang H, Wu Z.	Water Environ Res	10.1002/wer.11117	2024
	Diversity, vertical stratification and detection of Leishmania DNA in sand flies (Diptera: Psychodidae) collected in the Mapinguari National Park, Brazilian Amazon.	Dos Santos Teles Oliveira LK, da Silva MS, Munis TRM, Valenca GM, de Franca KP, Alves JD, Junior AMP, da Silva PEF, Medeiros JF.	Acta Trop	10.1016/j.actatropica.2024.107407	2024
	Identification of pancreatin inhibitors from Thai medicinal Piper plants for antidiabetic and anti-obesity activities using high-performance thin-layer chromatography-bioautographic assay.	Mingmuang J, Bunwatcharaphansakun P, Suriya U, Pipatrattanaseree W, Andriyas T, Tansawat R, Chansriniyom C, De-Eknamkul W.	J Chromatogr A	10.1016/j.chroma.2024.465358	2024
	First Report of Pseudocerradoa paullula Causing Aroid Leaf Rust on Swiss Cheese Plant (Monstera deliciosa) in South Carolina, U.S.A.	Yang X, Colburn GC, Roach K, Zee T, Long SH.	Plant Dis		2024
Enzymology	Trichoderma harzianum TIND02 upregulates the expression of pathogenesis-related genes and enzymes and enhances gray blight resistance in tea.	Pandey AK, Yadav S, Samota MK, Sharma HK, Roy S.	Pestic Biochem Physiol	10.1016/j.pestbp.2024.106115	2024
	Mucoadhesive chitosan-catechol as an efficient vaccine delivery system for intranasal immunization.	Deng K, Huang Z, Jing B, Zhu L, Feng Y, Jiang Q, Xu Z, Wan H, Zhao X.	Int J Biol Macromol	10.1016/j.ijbiomac.2024.133008	2024
	Insights into Autophagic Machinery and Lysosomal Function in Cells Involved in the Psoriatic Immune-Mediated Inflammatory Cascade.	Kuczynska M, Moskot M, Gabig-Ciminska M.	Arch Immunol Ther Exp (Warsz)	10.2478/aite-2024-0005	2024
	Poppy Seed Allergy: Molecular Diagnosis and Cross-Reactivity With Tree Nuts.	Podzhilkova A, Nagl C, Hummel K, Bindslev-Jensen C, Eller E, Mortz CG, Bublin M, Hoffmann-Sommergruber K.	J Allergy Clin Immunol Pract	10.1016/j.jaip.2024.05.001	2024
	Montelukast and cefoperazone act as antiquorum sensing and antibiofilm agents against Pseudomonas aeruginosa.	Vieira TF, Leitao MM, Cerqueira NMFSA, Sousa SF, Borges A, Simoes M.	J Appl Microbiol	10.1093/jambio/lxae088	2024
	ZIF-8@Hydroxyapatite Composite as a High Potential Material for Prolonged Delivery of Agrochemicals.	Morales-Camara S, Parra-Torrejon B, Rodriguez-Dieguez A, Delgado-Lopez JM, Ramirez-Rodriguez GB, Rojas S.	ACS Appl Mater Interfaces	10.1021/acsami.4c06016	2024
Phylogeny	Isolation and sequencing of Orthoflavivirus ilheusense from mosquitoes collected in the Brazilian cerrado, West-Central region, Brazil.	Reis LAM, Nunes Neto JP, Nascimento BLSD, Araujo AA, Nogueira CG, Cavalcante KRLJ, Ramos DG, Durans DBS, Wanzeler ALM, Santos MM, Junior JWR, Goncalves EJ, Silva SPD, Cruz ACR, Silva EVPD.	Acta Trop	10.1016/j.actatropica.2024.107272	2024
	Effectiveness of experimental dentifrices based on essential oils on biofilm on complete dentures: an in vitro study.	Dos Santos ACM, Mendes FSF, Pompeo FT, Watanabe E, Macedo AP, de Souza VOP, Paranhos HFO, Silva-Lovato CH.	J Appl Oral Sci	10.1590/1678-7757-2023-0397	2024
	Psoriasis dermatitis, a common phenotype of early forms of both psoriasis and atopic dermatitis in children: A prospective multicenter study.	Docampo-Simon A, Belinchon I, Sanchez-Pujol MJ, Berbegal L, Miralles J, Lucas A, Quecedo E, Fuertes A, Mateu-Puchades A, Betlloch I.	Int J Dermatol	10.1111/ijd.17100	2024
	[Porphyromonas gingivalis persisters induce the immuno-inflammatory responses in macrophages by upregulating the forkhead box1 signaling pathway].	Wang C, Wang LL, Li X, Jin LJ, Cao ZG.	Zhonghua Kou Qiang Yi Xue Za Zhi	10.3760/cma.j.cn112144-20231114-00248	2024
	Two new chironomid species of the genus Pseudokiefferiella Zavel (Diptera: Chironomidae: Diamesinae) from the Amur River basin of Russia.	Makarchenko EA, Semenchenko AA.	Zootaxa	10.11646/zootaxa.5339.5.5	2023
	New record of Psorophora howardii (Diptera: Culicidae) in Southern Ontario, Canada.	Benton N, Krokovsky L, Gasparotto A, Hunter FF.	J Med Entomol	10.1093/jme/tjaf096	2025
	Description of a new species, Pseudodiscocotyla mikiae n. sp. (Monogenea: Discocotylidae) parasitic on gills of Pristipomoides filamentosus from off Okinawa-jima island in Japan, with redescription of Pseudodiscocotyla opakapaka.	Kamio Y, Inoue A, Nitta M.	Syst Parasitol	10.1007/s11230-023-10115-2	2023
Phylogeny	Gastropod invasions in anthropogenically impacted impoundments in South Africa: Tracing their origins and exploring field evidence of parasite spillback and amplification.	Outa JO, Bhika P, Avenant-Oldewage A.	Int J Parasitol	10.1016/j.ijpara.2024.02.004	2024
	Interactions between Phaedrotoma scabriventris Nixon (Hymenoptera: Braconidae) and Zaeucoila unicarinata Ashmead (Hymenoptera: Figitidae), endoparasitoids of Liriomyza sativae Blanchard (Diptera: Agromyzidae)	Sousa MMd, Fernandes EC, Fernandes GM, Cunha RSMd, Silva JG, Araujo EL.	Biol Control	10.1016/j.biocontrol.2023.105358	2023
Enzymology	Biochemical characterization of glutaminase-free L-asparaginases from Himalayan Pseudomonas and Rahnella spp. for acrylamide mitigation.	Patial V, Kumar S, Joshi R, Singh D.	Int J Biol Macromol	10.1016/j.ijbiomac.2023.128576	2024
	Development and Crosslinking Properties of Psoralen-Conjugated Triplex-Forming Oligonucleotides as Antigene Tools Targeting Genome DNA.	Mikame Y, Eshima H, Toyama H, Nakao J, Matsuo M, Yamamoto T, Hari Y, Komano JA, Yamayoshi A.	ChemMedChem	10.1002/cmdc.202300348	2023
	Revision of the Genera Pseudatheta Cameron and Phymatura Sahlberg (Coleoptera, Staphylinidae, Aleocharinae) from Japan.	Hashizume T, Yamamoto S, Maruyama M.	Zootaxa	10.11646/zootaxa.5319.1.2	2023
	The pine pathogen Diplodia sapinea is associated with the death of large Douglas fir trees	Ritzer E, Schebeck M, Kirisits T.	For Pathol		2023
	Seasonality of Mosquitoes in North Dakota, 2003-2006, with Four New State Records.	Anderson JF, Main AJ, Armstrong PM, Andreadis TG.	J Am Mosq Control Assoc	10.2987/23-7118	2023
Enzymology	Effect of fungal pretreatment by Pycnoporus sanguineus and Trichoderma longibrachiatum on the anaerobic digestion of rice straw.	Rani J, Dhoble AS.	Bioresour Technol	10.1016/j.biortech.2023.129503	2023
	Field evaluation of a new suction light trap for the capture of phlebotomine sand flies (Diptera: Psychodidae: Phlebotominae), vectors of leishmaniasis.	Silva FS, das Neves GS, da Costa FF, de Oliveira AM, da Costa Viana J, Brito JM, Costa Neta BM.	Parasitol Res	10.1007/s00436-023-08076-y	2023
	Integrating multi-index determination coupled with hierarchical cluster analysis to evaluate the quality consistency of PVE30, an anti-HSV "glycoprotein" macromolecule of Prunellae Spica.	Luo X, Yuan M, Lu P, Zhong X, Zhang Y, Li Y, Xi Z, Zhang H, Li S, Xu H.	Phytochem Anal	10.1002/pca.3309	2024
	Biochar inoculated with Pseudomonas putida alleviates its inhibitory effect on biodegradation pathways in phenanthrene-contaminated soil.	Lu J, Liu Y, Zhang R, Hu Z, Xue K, Dong B.	J Hazard Mater	10.1016/j.jhazmat.2023.132550	2024
Pathogenicity	Anti-inflammatory effect of polydeoxyribonucleotides (PDRN) extracted from red alga (Porphyra sp.) (Ps-PDRN) in RAW 264.7 macrophages stimulated with Escherichia coli lipopolysaccharides: A comparative study with commercial PDRN.	Kim TH, Heo SY, Han JS, Jung WK.	Cell Biochem Funct	10.1002/cbf.3840	2023
	Evaluation of structural modification induced activation of pneumococcal polysaccharide by GC-MS for the conjugate vaccine.	Shende N, Karale A, Bore P, Bhagade S, Gulhane A, Mallya AD, Dhere RM.	Carbohydr Res	10.1016/j.carres.2023.108878	2023
	[A new integral enthesial-comorbididity index of psoriatic arthritis activity].	Korsakova YL, Korotaeva TV, Loginova EY, Gubar EE, Vorobyeva LD, Glukhova SI, Nasonov EL.	Ter Arkh	10.26442/00403660.2023.05.202197	2023
	Remarkable fungal biodiversity on northern Belgium bats and hibernacula.	Becker P, van den Eynde C, Baert F, D'hooge E, De Pauw R, Normand AC, Piarroux R, Stubbe D.	Mycologia	10.1080/00275514.2023.2213138	2023
	Fauna and taxonomy of Diamesinae (Diptera, Chironomidae) from the Caucasus, with a morphological description and DNA barcoding of new taxa and a discussion of diagnostic problems for Diamesa Meigen and Pseudodiamesa Goetghebuer.	Makarchenko EA, Semenchenko AA, Palatov DM.	Zootaxa	10.11646/zootaxa.5271.2.6	2023
	Diversity and temporal distribution of sand flies in an endemic area of cutaneous leishmaniasis in Centre-West Colombia.	Posada-Lopez L, Galvis-Ovallos F, Velez-Mira A, Velez ID, Galati EAB.	J Med Entomol	10.1093/jme/tjad040	2023
	Study on the effect of additives on microbial diversity, predicted functional profiles, and fermentation quality of Broussonetia papyrifera and Pennisetum sinese mixed ensilage in the karst region.	Xu D, Li M, Wang Y, Long J, Fan X, Lei Y, Li P, Cheng Q, Chen Y, Chen C.	Lett Appl Microbiol	10.1093/lambio/ovad039	2023
	Predation pressure regulates plant growth promoting (PGP) attributes of bacterial species.	Chandarana KA, Amaresan N.	J Appl Microbiol	10.1093/jambio/lxad083	2023
	Endogenous salicylic acid levels in Arabidopsis impact the growth-promoting activity of the beneficial rhizobacterium Pseudomonas simiae WCS417r.	Agorsor IDK.	BMC Res Notes	10.1186/s13104-025-07568-7	2025
	Resistance Risk Assessment for the New OSBP Inhibitor Y18501 in Pseudoperonospora cubensis and Point Mutations (G705V, L798W, and I812F) in PscORP1 that Confer Resistance.	Xue Z, Wang B, Li C, Yang H, Gao X, Sun M, Huang Z, Miao J, Liu X.	J Agric Food Chem	10.1021/acs.jafc.3c00188	2023
	Antimicrobial, antiadhesive, and antibiofilm actions of rhamnolipids on ESKAPE pathogens.	Firdose A, Chong NHH, Ramli R, Aqma WS.	Lett Appl Microbiol	10.1093/lambio/ovad013	2023
	Respiratory depression driven by membrane damage as a mechanism for linalool to inhibit Pseudomonas lundensis and its preservation potential for beef.	He R, Chen H, Chen W, Zhang M, Pei J, Chen W, Zhong Q.	J Appl Microbiol	10.1093/jambio/lxad023	2023
	Water Networks in Photosystem II Using Crystalline Molecular Dynamics Simulations and Room-Temperature XFEL Serial Crystallography.	Doyle MD, Bhowmick A, Wych DC, Lassalle L, Simon PS, Holton J, Sauter NK, Yachandra VK, Kern JF, Yano J, Wall ME.	J Am Chem Soc	10.1021/jacs.3c01412	2023
	Microbial cellulase production and stability investigations via graphene like carbon nanostructure derived from paddy straw.	Srivastava N, Singh R, Verma B, Rai AK, Tripathi SC, Bantun F, Faidah H, Singh RP, Jalal NA, Abdel-Razik NE, Haque S.	Int J Biol Macromol	10.1016/j.ijbiomac.2023.124033	2023
	Thin film poly(vinyl alcohol)-polysulfone composite membranes based on recycled polysulfone: salt separation performances.	Saxena M, Sharma S, Bhattacharya A.	Environ Sci Pollut Res Int	10.1007/s11356-022-24053-x	2023
Phylogeny	The mediating role of gut microbiota in the associations of prenatal maternal combined exposure to lead and stress with neurodevelopmental deficits in young rats.	Hua H, Huang L, Yang B, Jiang S, Zhang Y, Liu J, Yan C, Xu J.	Ecotoxicol Environ Saf	10.1016/j.ecoenv.2023.114798	2023
	Genomic divergence and introgression among three Populus species.	Zhang H, Zhang X, Wu G, Dong C, Liu J, Li M.	Mol Phylogenet Evol	10.1016/j.ympev.2022.107686	2023
	Synthesis of Chitosan Nanoparticles Conjugated With Protoporphyrin IX and Vitamin B9 for Their Application in Photodynamic Therapy.	Trejo-Santillan I, Mendoza-Guevara CC, Ramos-Godinez MDP, Ramon-Gallegos E.	IEEE Trans Nanobioscience	10.1109/tnb.2021.3137276	2022
	Production of borneol, camphor, and bornyl acetate using engineered Saccharomyces cerevisiae.	Tominaga M, Kawakami K, Ogawa H, Nakamura T, Kondo A, Ishii J.	Metab Eng Commun	10.1016/j.mec.2025.e00259	2025
Pathogenicity	Aquatic toxicity prediction of diverse pesticides on two algal species using QSTR modeling approach.	Banjare P, Singh J, Papa E, Roy PP.	Environ Sci Pollut Res Int	10.1007/s11356-022-22635-3	2023
	Transcriptomic analysis of the response of Photobacterium phosphoreum and Photobacterium carnosum to co-contaminants on chicken meat.	Hauschild P, Vogel RF, Hilgarth M.	Arch Microbiol	10.1007/s00203-022-03059-6	2022
Biotechnology	Characterization and identification of fungicide insensitive Pestalotiopsis-like species pathogenic to tea crop in India.	Pandey AK, Hubbali M, Vandana, Dutta P, Babu A.	World J Microbiol Biotechnol	10.1007/s11274-022-03474-3	2022
	Positive effects of steamed Polygonatum sibiricum polysaccharides including a glucofructan on fatty acids and intestinal microflora.	Xu Y, Ye Y, Liu C, Chen B, Ji J, Sun J, Zhang Y, Sun X.	Food Chem	10.1016/j.foodchem.2022.134068	2023
	Development of a "turn off-on" whole-cell biosensor for sulforaphane detection based on the ultrasensitive activator HrpRS.	Li R, Chen S, Li Y, Chen X, Ye BC.	Biotechnol Appl Biochem	10.1002/bab.2400	2023
Phylogeny	Multigene phylogenetic analysis reveals non-monophyly of Anisakis s.l. and Pseudoterranova (Nematoda: Anisakidae).	Takano T, Sata N.	Parasitol Int	10.1016/j.parint.2022.102631	2022
	Melioration of Paddy Straw to produce cellulase-free xylanase and bioactives under Solid State Fermentation and deciphering its impact by Life Cycle Assessment.	Singh G, Samuchiwal S, Hariprasad P, Sharma S.	Bioresour Technol	10.1016/j.biortech.2022.127493	2022
Enzymology	Acrylamide mitigation in foods using recombinant L-asparaginase: An extremozyme from Himalayan Pseudomonas sp. PCH182.	Patial V, Kumar V, Joshi R, Gupta M, Singh D.	Food Res Int	10.1016/j.foodres.2022.111936	2022
	Molecular phylogenetic relationship between Philometroides tahieli (Nematoda, Philometridae) and other philometrids from South America.	Montes MM, Acosta Albarracin M, Barneche J, Croci Y, Balcazar D, Reig Cardarella GF, Martorelli SR.	Parasitol Res	10.1007/s00436-022-07652-y	2022
Enzymology	Trichoderma reesei as an elicitor triggers defense responses in tea plant and delays gray blight symptoms.	Pandey AK, Kumar A, Samota MK, Tanti A.	Pestic Biochem Physiol	10.1016/j.pestbp.2022.105279	2022
Enzymology	Molecular cloning and characterization of Sirt1 and its role in the follicle of juvenile Chinese soft-shelled turtle (Pelodiscus sinensis).	Zhang H, Gao Y, Wang G, Xin Q, Tian X, Wu L, Shi X, Ma W, Liu H, Jiang H, Wu Q, Li X, Ma X.	Gene	10.1016/j.gene.2023.147211	2023
	Design and synthesis of versatile GSTP1-specific fluorogenic substrates for the highly sensitive detection of GSTP1 activity in living cells.	Watanabe K, Fujikawa Y, Murakami-Tonami Y, Mori M, Sakata M, Inoue H.	Talanta	10.1016/j.talanta.2022.123796	2023
	Polygonatum sibiricum improves menopause symptoms by regulating hormone receptor balance in an ovariectomized mouse model.	Park DR, Yeo CH, Yoon JE, Hong EY, Choi BR, Lee YJ, Ha IH.	Biomed Pharmacother	10.1016/j.biopha.2022.113385	2022
	Polystyrene microplastics enhanced copper-induced acute immunotoxicity in red swamp crayfish (Procambarus clarkii).	Zeng Q, Yang Q, Chai Y, Wei W, Luo M, Li W.	Ecotoxicol Environ Saf	10.1016/j.ecoenv.2022.114432	2023
Phylogeny	Fecal Microbiota Changes in Angus Beef Cows Persistently Infected by Bovine Viral Diarrhea Virus.	Xia R, Chen Y, Yi P, Sun Y, Chen L, Ma X, Zhong Q, Li N, Yao G.	Vet Sci	10.3390/vetsci12060538	2025
	An integration of UPLC-Q-TOF/MS and chemometrics analysis for the holistic quality evaluation of different geographical Paederia scandens.	Zhang Z, Peng L, Chen Y, Zhang K, Chen J, Li Z, Li W.	Rapid Commun Mass Spectrom	10.1002/rcm.9317	2022
	Pseudomonas stutzeri PM101005 inhaled with atmospheric particulate matter induces lung damage through inflammatory responses.	Jeong YJ, Kim CU, Lee KS, Kim JH, Park SY, Jeong AY, Lee JB, Kim DJ, Park YJ, Lee MS.	Environ Pollut	10.1016/j.envpol.2022.120741	2023
	Early Detection of Compartment Syndrome With Minimal Symptoms: A Case Report on Continuous Pressure Monitoring.	Al Nasser AM, Harvey EJ, Bunting AC.	Cureus	10.7759/cureus.74453	2024
	Diagnosing P. simium zoonotic malaria infection in the Rio de Janeiro Atlantic forest, Brazil.	de Fatima Ferreira-da-Cruz M, Almeida-de-Oliveira NK, de Abreu-Fernandes R, de Lavigne Mello AR, Zanini G, de Abreu FVS, de Pina-Costa A, Lourenco-de-Oliveira R, Brasil P, Daniel-Ribeiro CT.	Sci Rep	10.1038/s41598-025-07900-y	2025
	Effect of Nigella sativa oil and ciprofloxacin against bacterial infection on gene expression in Nile tilapia (Oreochromis niloticus) blood	Hal AM, El-Barbary MI.	Aquaculture	10.1016/j.aquaculture.2020.736071	2022
	Sequencing of laser captured Z and W chromosomes of the tocantins paradoxical frog (Pseudis tocantins) provides insights on repeatome and chromosomal homology.	Gatto KP, Timoshevskaya N, Smith JJ, Lourenco LB.	J Evol Biol	10.1111/jeb.14027	2022
	Effects of dietary supplementation with a postbiotic and phytogenic formulation on growth performance and immune responses of whiteleg shrimp (Litopenaeus vannamei)	Thuy N, Van Tuan T, Hai D, Nsereko V, Lua D.	Comparative Immunology Reports		2025
Phylogeny	Reinstatement and phylogenetic allocation of the palm rust genus Cerradoa in the Pucciniaceae, and establishment of Pseudocerradoa, gen. nov.	Ebinghaus M, Dos Santos MDM, Souza ESC, Barnes CW, Ndacnou MK, Velez-Zambrano SM, Galvao-Elias S, Begerow D, Barreto RW, Dianese JC.	Mycologia	10.1080/00275514.2022.2084672	2022
	Antimicrobial Peptides from Human Microbiome Against Multidrug Efflux Pump of Pseudomonas aeruginosa: a Computational Study.	Mulpuru V, Mishra N.	Probiotics Antimicrob Proteins	10.1007/s12602-022-09910-y	2022
	Refining and defining the genus Psammopyrum (Triticeae, Poaceae): taxonomic evaluation of Ps. fontqueri with implications for the validity of the genus	Lucia V, Anamthawat-Jonsson K, Martinez-Ortega MM, Rico E.	Plant Syst Evol	10.1007/s00606-020-01664-w	2022
	Transferrin/folate dual-targeting Pluronic F127/poly(lactic acid) polymersomes for effective anticancer drug delivery.	Wang QX, Chen X, Li ZL, Gong YC, Xiong XY.	J Biomater Sci Polym Ed	10.1080/09205063.2022.2044434	2022
	Molecular characterization and functional analysis of Esr1 and Esr2 in gonads of Chinese soft-shelled turtle (Pelodiscus sinensis).	Wang L, Cen S, Shi X, Zhang H, Wu L, Tian X, Ma W, Li X, Ma X.	J Steroid Biochem Mol Biol	10.1016/j.jsbmb.2022.106147	2022
	Robustness of rhizosphere microbial communities of L. sativa originated from soils of different legacy after inoculation with Plant Growth Promoting Rhizobacteria	Papatheodorou EM, Monokrousos N, Angelina E, Stamou GP.	Appl Soil Ecol	10.1016/j.apsoil.2021.104028	2021
Enzymology	Identification of Enzymes from Pseudogluconobacter saccharoketogenes Producing d-Glucaric Acid from d-Glucose.	Ito T, Masaki H, Fujita K, Murakami H, Shizuma M, Kiso T, Kiryu T.	Biosci Biotechnol Biochem	10.1093/bbb/zbab182	2021
	Metabolic Signatures of Four Polygonatum Rhizoma Species Mapped Using Untargeted Metabolomics.	Jia N, Jiang J, Ye W, Liu J.	Metabolites	10.3390/metabo15110682	2025
	Toxigenic Microcystis aeruginosa (Cyanobacteria) affects the population growth of two common green microalgae: Evidence of other allelopathic metabolites different to cyanotoxins	Hernandez-Zamora M, Santiago-Martinez E, Martinez-Jeronimo F.	Journal of Phycology.		2021
	Process monitoring of polysaccharide deketalization for vaccine bioconjugation development using in situ analytical methodology.	Lomont JP, Ralbovsky NM, Guza C, Saha-Shah A, Burzynski J, Konietzko J, Wang SC, McHugh PM, Mangion I, Smith JP.	J Pharm Biomed Anal	10.1016/j.jpba.2021.114533	2022
	Novel quinoline-based derivatives as the PqsR inhibitor against Pseudomonas aeruginosa PAO1.	Huang XH, She MT, Zhang YH, Liu YF, Zhong DX, Zhang YH, Zheng JX, Sun N, Wong WL, Lu YJ.	J Appl Microbiol	10.1111/jam.15601	2022
	Bioactive Compounds of Polygonatum sibiricum - Therapeutic Effect and Biological Activity.	Zhao X, Patil S, Qian A, Zhao C.	Endocr Metab Immune Disord Drug Targets	10.2174/1871530321666210208221158	2022
	HulaChrimson: A Chrimson-like cation channelrhodopsin discovered using freshwater metatranscriptomics from Lake Hula.	Takahashi H, Takaramoto S, Nagata T, Fainsod S, Kato Y, Beja O, Inoue K.	Biophys Physicobiol	10.2142/biophysico.bppb-v22.0014	2025
	Influence of Mediterranean shrublands management on soil carbon sequestration.	Gonzalez-Morales M, Rodriguez-Gonzalez MA, Paredes D, Fernandez-Pozo L.	iScience	10.1016/j.isci.2025.113057	2025
Genetics	Complete genome sequences of two Pantoea stewartii strains ATCC 8199 from maize and PSCN1 from sugarcane.	Chu N, Liu TT, Zhang HL, Cui D, Huang MT, Fu HY, Su JB, Gao SJ.	BMC Genom Data	10.1186/s12863-024-01268-0	2024
Genetics	Mitogenomes of mosquito species of Harris County in Texas.	Ali RLMN, Gauthier C, Verde J, Rezaei H, Pritts K, Vigilant M, Nash B, Henriquez B, Vela J, Saldana MA, Frost SDW, Jackson E, Reddy M, Hoyer I, Pipas JM, Norris DE.	Sci Rep	10.1038/s41598-025-04864-x	2025
	Microbiome-informed study of the mechanistic basis of methane inhibition by Asparagopsis taxiformis in dairy cattle.	Indugu N, Narayan K, Stefenoni HA, Hennessy ML, Vecchiarelli B, Bender JS, Shah R, Dai G, Garapati S, Yarish C, Welchez SC, Raisanen SE, Wasson D, Lage C, Melgar A, Hristov AN, Pitta DW.	mBio	10.1128/mbio.00782-24	2024
	Trypanosomatids in Phlebotomine Sand Flies (Diptera: Phlebotominae) From Anthropic and Sinantropic Landscapes in a Rural Settlement in the Brazilian Amazon.	Guimaraes RCS, Marialva EF, Feijo JA, Pereira-Silva JW, Martins-Campos KM, Gontijo CMF, Pereira AAS, Rios-Velasquez CM, Pessoa FAC.	J Med Entomol	10.1093/jme/tjab208	2022
	Meconial Methanobrevibacter smithii suggests intrauterine methanogen colonization in preterm neonates.	Sereme Y, Guindo CO, Filleron A, Corbeau P, Tran TA, Drancourt M, Vitte J, Grine G.	Curr Res Microb Sci	10.1016/j.crmicr.2021.100034	2021
	Rethinking the Paradigm of Using Ps for Diagnosing Compartment Syndrome.	Bouklouch Y, Agel J, Obremskey WT, Schmidt AH, Liu K, Westberg JR, Zakariah M, Bunzel E, Henry G, Diaz AF, Begue T, Bernstein M, Harvey EJ.	JB JS Open Access	10.2106/jbjs.oa.24.00065	2025
	An endophytic fungus, Penicillium simplicissimum conjugated with C60 fullerene for its potential antimitotic, anti-inflammatory, anticancer and photodegradation activities.	Govindappa M, Vishaka A, Akshatha BS, Popli D, Sunayana N, Srinivas C, Pugazhendhi A, Raghavendra VB.	Environ Technol	10.1080/09593330.2021.1985621	2023
	Biosecurity test of conjugated nanoparticles of chitosan-protoporphyrin IX-vitamin B9 for their use in photodynamic therapy.	Trejo-Santillan I, Mendoza-Guevara CC, Ramos-Godinez MDP, Ramon-Gallegos E.	IEEE Trans Nanobioscience	10.1109/tnb.2021.3104286	2021
	Comparison of Morphological Characteristics of Antennae and Antennal Sensilla Among Three Species of Gall Wasps (Hymenoptera: Eulophidae).	Xie J, Liu Y, Li J, Zhou L, Xu X, Yang Z.	Insects	10.3390/insects16090976	2025
	Methanobrevibacter smithii tonsillar phlegmon: a case report.	Djemai K, Gouriet F, Michel J, Radulesco T, Drancourt M, Grine G.	New Microbes New Infect	10.1016/j.nmni.2021.100891	2021
Genetics	First Detection of a Novel Posavirus 2 Strain Identified from Pigs in China.	Chen L, Lu H, Gao X, Zhou H, Wang J, Zhang Z, Chen B, Li C, Liang L, Zhou L, Zhang Y.	Pathogens	10.3390/pathogens13121036	2024
	[Effect of cropping patterns onbacterial community diversity and metabolic function in rhizosphere soil of Angelica sinensis].	Jiang XF, Guo FX, Chen Y, Guo JG, Liu XF.	Ying Yong Sheng Tai Xue Bao	10.13287/j.1001-9332.202112.031	2021
	Mosquitoes in small urban spaces: identification of blood meals and flight distances of engorged females in the southern Great Plains of the United States.	Henriquez BE, Loss SR, Noden BH.	J Med Entomol	10.1093/jme/tjaf105	2025
Genetics	Genome Mining Reveals a Novel Nephthenol-Producing Diterpene Synthase from the Sandfly Lutzomyia Longipalpis.	Ducker C, McKeown C, Da Silva IFP, Souza IT, Pickett JA, Santana AEG, Oldham NJ.	Chembiochem	10.1002/cbic.202500292	2025
	Toxigenic Microcystis aeruginosa (Cyanobacteria) affects the population growth of two common green microalgae: Evidence of other allelopathic metabolites different to cyanotoxins.	Hernandez-Zamora M, Santiago-Martinez E, Martinez-Jeronimo F.	J Phycol	10.1111/jpy.13185	2021
Biotechnology	Swine wastewater treatment in high rate algal ponds: Effects of Cu and Zn on nutrient removal, productivity and biomass composition.	Oliveira APS, Assemany P, Ribeiro Junior JI, Covell L, Nunes-Nesi A, Calijuri ML.	J Environ Manage	10.1016/j.jenvman.2021.113668	2021
	Multifunctional Surface, Subsurface, and Systemic Therapeutic (MS3T) Formulation for the Control of Citrus Canker.	Smith SL, Campos MGN, Ozcan A, Mendis HC, Young M, Myers ME, Atilola M, Doomra M, Thwin Z, Johnson EG, Santra S.	J Agric Food Chem	10.1021/acs.jafc.1c03323	2021
	Yellow Fever Virus (YFV) Detection in Different Species of Culicids Collected During an Outbreak in Southeastern Brazil, 2016-2019.	Caleiro GS, Vilela LO, Nuevo KMB, Tubaki RM, de Menezes RMT, Mucci LF, Telles-de-Deus J, Bergo ES, Araujo ELL, Cunha MS.	Trop Med Infect Dis	10.3390/tropicalmed10050118	2025
	A new antidiabetic foot bacteria formula from marine chitosan nanosilver-metal complex.	Ghonam HE, Abu Yousef MA, Gohar YM, Almeer R, Barakat KM.	Environ Sci Pollut Res Int	10.1007/s11356-021-14958-4	2021
	Association between IL-17A, IL-17F and IL-17RA gene polymorphisms and susceptibility to psoriasis and psoriatic arthritis: a meta-analysis.	Villalpando-Vargas FV, Rivera-Valdes JJ, Alvarado-Navarro A, Huerta-Olvera SG, Macias-Barragan J, Martinez-Lopez E, Graciano-Machuca O.	Inflamm Res	10.1007/s00011-021-01514-6	2021
Pathogenicity	Effect of carboxymethyl chitosan on the detoxification and biotransformation of paralytic shellfish toxins in oyster Ostrea rivularis.	Yang X, Hu X, Dong Z, Li M, Zheng Z, Xie W.	Toxicon	10.1016/j.toxicon.2021.03.006	2021
	The structure of a pectin-active family 1 polysaccharide lyase from the marine bacterium Pseudoalteromonas fuliginea.	Hobbs JK, Boraston AB.	Acta Crystallogr F Struct Biol Commun	10.1107/s2053230x2400596x	2024
	Phenotypic, molecular detection, and antibiogram analysis of Pseudomonas species from Oreochromis niloticus.L 1758 (Nile Tilapia) from aquaculture pond, Ethiopia.	Abdi AK, Pavanasam N, Chibssa TR, Mohamed AA, Senbata B, Bedewi Z, Disasa G.	BMC Vet Res	10.1186/s12917-025-05071-6	2025
	Different Urban Forest Tree Species Affect the Assembly of the Soil Bacterial and Fungal Community.	Ao L, Zhao M, Li X, Sun G.	Microb Ecol	10.1007/s00248-021-01754-3	2022
Pathogenicity	Synergistic Effect of Biogenics Derived from Potential Probiotics Together with Zingerone Against Biofilm Formation by Pseudomonas aeruginosa PAO1.	Chandla S, Harjai K, Shukla G.	Probiotics Antimicrob Proteins	10.1007/s12602-021-09763-x	2021
	Ecotoxicological effects of new generation pollutants (nanoparticles, amoxicillin and white musk) on freshwater and marine phytoplankton species.	Broccoli A, Anselmi S, Cavallo A, Ferrari V, Prevedelli D, Pastorino P, Renzi M.	Chemosphere	10.1016/j.chemosphere.2021.130623	2021
	A phylogeographic study of two acanthocephalan species from aquatic birds distributed in the Nearctic and neotropical region of Mexico and the USA.	Sereno-Uribe AL, Gonzalez-Garcia MT, Lopez-Jimenez A, Aldama-Prieto Y, Ortega-Olivares MP, Garcia-Varela M.	Parasitology	10.1017/s0031182025100565	2025
	The Significant Impact of Lost Species' Identity, Number and Abundance on Functional Structure of Alpine Meadow.	Yang Z, Qu-Zong CR, Zhang Y, Li X, Gyal S, Mazhang W, Yang Y, Zhang G, Se C, Quzhen D, Mao J, Mu C, Wang L, Wang S, Dorji T.	Ecol Evol	10.1002/ece3.72136	2025
	First record of Psorophora ferox (Diptera: Culicidae) infested with eggs of Dermatobia hominis (Diptera: Cuterebridae), in Ucayali: Peru.	Requena-Zuniga E, Chapilliquen-Alban F, Leon-Cueto W, Bances-Juarez F, Valle-Toledo J, Rojas-Jaimes J.	BMC Res Notes	10.1186/s13104-024-06759-y	2024
Pathogenicity	Understanding Bacterial Antiviral Defence Systems and Phage Receptors to Better Inform Rational Phage Cocktail Design to Treat Bacterial Canker.	Cooney-Nutley K, Chakravorty S, Nix I, Zeng Z, Greer SF, Rabiey M.	Microb Biotechnol	10.1111/1751-7915.70232	2025
	Interpreting pendred syndrome as a foetal hydrops: Clinical and animal model evidence.	Simon F, Denoyelle F, Beraneck M.	J Vestib Res	10.3233/ves-200789	2021
	Optimization of Laponite Nanogel with Curcumin Incorporation: A Quality by Design Approach.	Li J, Kong X, Chen H, Lu M, Liu X, Wang L.	Gels	10.3390/gels11090677	2025
	Biofilm destruction activity of alpha-tocopherol against Staphylococcus aureus, Proteus mirabilis, and Pseudomonas aeruginosa.	Leong PY, Tan WQ, Choo WS.	FEMS Microbiol Lett	10.1093/femsle/fnaf020	2025
	Biological control of Phytophthora blight and growth promotion in sweet pepper by Bacillus species	Bhusal B, Mmbaga MT.	Biol Control	10.1016/j.biocontrol.2020.104373	2020
	Bidirectional Mendelian Randomization Study Identifies No Genetic Link Between Psoriasis and Diabetes.	Li J, Li M, Kong S, Zhong C, Sun D, Zhang L.	J Diabetes Res	10.1155/jdr/9917071	2025
	Tissue and Salivary NMR Metabolomics in Reticular-Type Oral Lichen Planus.	Setti G, Gambini A, Righi V, Mucci A, Pertinhez TA, Ferrari E, Gallo M, Biscussi B, Antonelli R, Meleti M, Magnoni C.	NMR Biomed	10.1002/nbm.70137	2025
	Rapid Detection of Philaenus italosignus Drosopoulos & Remane, 2000 (Hemiptera: Aphrophoridae) with Real-Time PCR Probe LNA Technology.	Rizzo D, Downes A, Campigli S, Palmigiano B, Zubieta CG, Papini V, Moriconi M, Garganese F, Picciotti U, Husein A, Ranaldi C, Bolige E, Bartolini L, Porcelli F.	Insects	10.3390/insects16101014	2025
	Gram-Negative Microbiota Derived from Trout Fished in Slovakian Water Sources and Their Relationship to Postbiotics.	Laukova A, Kandricakova A, Scerbova J, Pogany Simonova M, Zitnan R.	Pathogens	10.3390/pathogens14070644	2025
Transcriptome	Genome-Wide Identification of the OPT Gene Family and Screening of Sb-Responsive Genes in Brassica juncea.	Liu X, Chen M, Yuan Y, Sheng J, Zhong P, Gong S, Liu Z, Xiang G, Hu J, Yan M, Chen Y, You L.	Plants (Basel)	10.3390/plants14213399	2025
	Regulation of Pseudomonas sp. PSC001 on the Artificial Rumen Environment Contaminated by Zearalenone.	Han Y, Li X, Ren X, Song C, Zhang Z, Gao Y, Shi D, Deng H, Huangfu H, Wang J.	Toxins (Basel)	10.3390/toxins17090471	2025
	Investigation of Bacteriocin Production Ability of Pediococcus acidilactici JM01 and Probiotic Properties Isolated From Tarak, a Conventional Korean Fermented Milk.	Ahn H, Lee HJ.	Food Sci Nutr	10.1002/fsn3.71003	2025
	Expression of Concern: EARLY FLOWERING 3 interactions with PHYTOCHROME B and PHOTOPERIOD1 are critical for the photoperiodic regulation of wheat heading time.	PLOS Genetics Editors.	PLoS Genet	10.1371/journal.pgen.1011095	2023
Pathogenicity	Molecular Screening of Plasmodium spp. in Free-Living Ring-Tailed Coatis (Nasua nasua) and Nine-Banded Armadillos (Dasypus novemcinctus) in the Peruvian Amazon	Ulloa G, Greenwood A, Cornejo O, Monteiro F, Santolalla M, Mayor P.	Animals (Basel)		2025
	Superior thermostability and divalent cation sensitivity of isoamylase CMI294C from Cyanidioschyzon merolae.	Okada K, Someya T, Osanai T.	Plant Mol Biol	10.1007/s11103-025-01623-4	2025
	Quantification of Extracellular Proteases and Chitinases from Marine Bacteria.	Zou Y, Robbens J, Heyndrickx M, Debode J, Raes K.	Curr Microbiol	10.1007/s00284-020-02216-8	2020
	Phenotypic characterization and phylogenetic analysis of Pseudomonas syringae strains associated with canker disease on apricot in Iran within the context of the global genetic diversity of the P. syringae complex	Vasebi Y, Khakvar R, Tian L, Moubarak P, Valentini F, Weisberg AJ, Vinatzer BA.	Eur J Plant Pathol	10.1007/s10658-020-02101-x	2020
	Positronium lifetime validation measurements using a long-axial field-of-view positron emission tomography scanner.	Steinberger WM, Mercolli L, Breuer J, Sari H, Parzych S, Niedzwiecki S, Lapkiewicz G, Moskal P, Stepien E, Rominger A, Shi K, Conti M.	EJNMMI Phys	10.1186/s40658-024-00678-4	2024
	Scrub Typhus and Dengue Co-infection in an Adolescent Girl: A Diagnostic Challenge.	Kannabiran RK, Banerjee A, Jyothi L, Reddy M, Narang R.	Cureus	10.7759/cureus.40810	2023
Genetics	Comparative Genomics Reveals Evolution of a Beak Morphology Locus in a High-Altitude Songbird.	Cheng Y, Miller MJ, Zhang D, Song G, Jia C, Qu Y, Lei F.	Mol Biol Evol	10.1093/molbev/msaa157	2020
	Testicular Tumors and Environmental Pollution: A Comparative Oncoepidemiology Study in the Campania Region from 2020 to 2023	Di Napoli E, De Biase D, degli Uberti B, Dimatteo M, Baldi L, Cavallo S, Rosato G, Izzillo D, Piegari G, Russo V, Rossetti S, Bruzzese F, Palmieri C, Budillon A, Paciello O.	Vet Sci		2025
	Characterization of the mycovirus Aspergillus sulphureus partitivirus 1.	Buma S, Urayama SI, Tomita K, Oiki S, Okada S, Ninomiya A.	Arch Virol	10.1007/s00705-025-06333-2	2025
Pathogenicity	Methodologies for Detoxifying Bivalves from Marine Paralytic Shellfish Toxins.	Aderogba A, Leal JF, Cristiano MLS.	Mar Drugs	10.3390/md23100398	2025
	The Buffer Capacity of Polyelectrolyte Microcapsules Depends on the Type of Template.	Dubrovskii AV, Kim AL, Tikhonenko SA.	Polymers (Basel)	10.3390/polym16162261	2024
	Bioinformatics meets machine learning: identifying circulating biomarkers for vitiligo across blood and tissues.	Wang Q, Yuan J, Zhang M, Jia H, Lu H, Wu Y.	Front Immunol	10.3389/fimmu.2025.1543355	2025
	Texas Mosquito Control Response Following Hurricane Harvey.	Qualls WA, Breidenbaugh MS.	J Am Mosq Control Assoc	10.2987/19-6883.1	2020
	Respiratory Microbiota and Health Risks in Children with Cerebral Palsy: A Narrative Review.	Peneva P, Pancheva R, Nikolova SP.	Children (Basel)	10.3390/children12030358	2025
	Draft Genome Sequence of Methanobrevibacter smithii Isolate WWM1085, Obtained from a Human Stool Sample.	Jennings ME, Chia N, Boardman LA, Metcalf WW.	Genome Announc	10.1128/genomea.01055-17	2017
Genetics	Banana genotype-associated microbiomes play an essential role in suppressing Fusarium wilt.	Zhang W, Xu S, Bai T, Aman BO, Wang Y, Li S, Wang J, Qin Y, Wang YY, Zheng SJ.	BMC Plant Biol	10.1186/s12870-025-07565-9	2025
	Efficient fungal and bacterial facilitated remediation of thiencarbazone methyl in the environment.	Ahmad KS, Gul P, Gul MM.	Environ Res	10.1016/j.envres.2020.109811	2020
	Diversity and life strategies of cyanobacteria and bryophytes within biocrusts in the context of mining tailings disasters in Brazil.	Oliveira MF, Souza LA, Figueredo CC, Maciel-Silva AS.	Plant Biol (Stuttg)	10.1111/plb.70037	2025
	Wing size and parity as markers of cohort demography for potential Anopheles (Culicidae: Diptera) malaria vectors in the Republic of Korea.	Foley DH, Wilkerson RC, Kim HC, Klein TA, Kim MS, Li C, Levin DM, Rueda LM.	J Vector Ecol	10.1111/jvec.12406	2020
	Hematoma-inspired injectable composite hydrogels incorporating hybrid metal ion microspheres for accelerated bone regeneration.	Cao F, Wu JY, Wang QN, Xiao JJ, Chen Z, Wang YW, Wang ZG, Xu JZ, Li ZM, Zhao BS.	Mater Today Bio	10.1016/j.mtbio.2025.102342	2025
	Assessment of the Relationship between Clinical Variants of Psoriasis and Killer Immunoglobulin-like Receptor (KIR) Genes: A Systematic Review with Meta-analysis.	Macias-Barragan J, Montoya-Buelna M, Enciso-Vargas M, Alvarado-Ruiz L, Oceguera-Contreras E, Guerra-Renteria AS, Graciano-Machuca O.	Immunol Invest	10.1080/08820139.2020.1840582	2022
Proteome	Antibacterial potential assessment of Nalca (Gunnera tinctoria Mol.) ethanolic extracts.	Velasquez P, Riquelme K, Leyton F, Giordano A, Gomez M, Montenegro G.	Nat Prod Res	10.1080/14786419.2020.1777118	2021
	Fine mapping of the peach pollen sterility gene (Ps/ps) and detection of markers for marker-assisted selection	Eduardo I, de Tomas C, Alexiou K, Giovannini D, Pietrella M, Carpenedo S, Bassols Raseira M, Batlle I, Cantin C, Aranzana M, Arus P.	Mol Breed	10.1007/s11032-020-01139-3	2020
	Characterizing and Engineering a Succinate-Responsive Biosensor System in Escherichia coli.	Zou Y, Qian Y, Parish C, Huddle L, Yan Y.	ACS Synth Biol	10.1021/acssynbio.5c00290	2025
	Effects of rainfall interception by sand-fixing vegetation on soil carbon and nitrogen distribution in a sand-covered hilly area.	Xin W, Zhenqi Y, Jianying G, Li Z, Fucang Q.	Front Plant Sci	10.3389/fpls.2025.1662481	2025
	Effect of Polygonatum sibiricum on biological toxicity of zinc oxide nanoparticles during respiratory exposure.	Yao J, Yang W, Tang L, Yang D, Xu Y, Zhu S, Zhu J.	RSC Adv	10.1039/d4ra03738c	2024
Metabolism	A Pd1-Ps-P1 Feedback Loop Controls Pubescence Density in Soybean.	Liu S, Fan L, Liu Z, Yang X, Zhang Z, Duan Z, Liang Q, Imran M, Imran M, Zhang M, Tian Z.	Mol Plant	10.1016/j.molp.2020.10.004	2020
	Transforming a Historical Chemical Synthetic Route for Vanillin Starting from Renewable Eugenol to a Cell-Free Bi-Enzymatic Cascade.	Lanfranchi E, Ferrario V, Gandomkar S, Payer SE, Zukic E, Rudalija H, Musi A, Gaberscek I, Orel Y, Schachtschabel D, Willrodt C, Breuer M, Kroutil W.	ChemSusChem	10.1002/cssc.202500387	2025
	Features of the Formation of Communities of Microorganisms Adapting to the Existing Conditions in Different Types of Agrophytocenoses.	Tokhtar VK, Tokhtar LA, Zelenkova VN, Tretyakov MY, Dunaeva EN.	Arch Razi Inst	10.22092/ari.2022.360060.2541	2022
Genetics	Characterising a Novel Therapeutic Target for Psoriasis, TYK2, Using Functional Genomics.	Rane SS, Elyoussfi S, Shellard E, Eyre S, Warren RB.	Int J Mol Sci	10.3390/ijms252313229	2024
	Electrospun Chitosan-Coated Recycled PET Scaffolds for Biomedical Applications: Short-Term Antimicrobial Efficacy and In Vivo Evaluation.	Gramada Pintilie AM, Niculescu AG, Birca AC, Holban AM, Ciceu A, Balta C, Herman H, Hermenean A, Ardelean S, Stoica AE, Grumezescu AM, Alberts A.	Polymers (Basel)	10.3390/polym17081077	2025
	[Effects of polystyrene microplastics (PS-MPs) on the growth, physiology, and biochemical characteristics of Hydrilla verticillata].	Zhang C, Jian MF, Chen YM, Chen QQ, He XF, Cong MY, Yang WJ.	Ying Yong Sheng Tai Xue Bao	10.13287/j.1001-9332.202101.037	2021
	Comparative Analysis of Microalgae's Physiological Responses to Fibrous and Layered Clay Minerals.	Jiang Z, Wei T, Wu S, Wang Z, Zhao Z, Zhang L, Ge Y, Li Z.	Biology (Basel)	10.3390/biology14060647	2025
	Properties and Potential of Green Natural Rubber Composites Filled with Biofillers from Cassia bakeriana Craib and Cassia fistula L. Pods	Yodpanya S, Phothikamon W, Sirisinha C, Sae-Oui P, Chanapattharapol K, Poosimma P, Lorwanishpaisarn N, Siriwong C.	ACS Omega
	Toxicity of Volatile Organic Compounds Produced by Pathogens Ewingella americana and Cedecea neteri Associated with Pleurotus pulmonarius.	Wei Z, Wang Y, Qiu J, Nie Y, Wang L, Liu B.	Toxins (Basel)	10.3390/toxins17090449	2025
	Development of a Multiplex PCR to Simultaneously Detect Four Problematic Pathogens in Cymbidium kanran.	Kim J, Yoon S, Kang S, Kim HB, Boo KH.	Plant Pathol J	10.5423/ppj.oa.07.2024.0101	2024
	Determination of volatile organic compounds in the stinkhorn fungus Pseudocolus fusiformis in different stages of fruiting body formation	Kakumyan P, Suwannarach N, Kumla J, Saichana N, Lumyong S, Matsui K.	Mycoscience	10.1016/j.myc.2019.11.001	2020
	Characterization of a New Stripe Rust Resistance Gene on Chromosome 2StS from Thinopyrum intermedium in Wheat.	Jiang C, Luo Y, Huang D, Chen M, Yang E, Li G, Yang Z.	Plants (Basel)	10.3390/plants14101538	2025
	ENT-1-Targeted Polymersomes to Enhance the Efficacy of Methotrexate in Choriocarcinoma Treatment.	Mamnoon B, Mesquita Souza AP, Korzun T, Baldwin MK, Sharma KS, Taratula O, Goo YT, Singh P, Grigoriev V, Lakhanpal A, Taratula OR.	Small Sci	10.1002/smsc.202400361	2025
	Spatial and seasonal dynamics of mosquito species in Harris County, Texas, highlight risk of arbovirus introduction and transmission.	Jibowu M, Vigilant M, Costa-da-Silva AL, Nelson A, Essigmann HT, Brown EL, Gunter SM.	Sci Rep	10.1038/s41598-025-92175-6	2025
	Environmental Detoxification of Benzimidazole Fungicide Fuberidazole via Microbial Action in Liquid Cultures.	Al-Hawadi JS, Ahmad KS, Gul MM, Ashraf GA, Altaf M.	Mycobiology	10.1080/12298093.2024.2416733	2024
	Phosphorus-solubilizing fungi improve growth and P nutrition in sorghum at variable salinity levels.	Chandra P, Rai AK, Basak N, Sundha P, Prajapat K, Singh A, Mann A, Yadav RK.	Environ Microbiome	10.1186/s40793-025-00716-3	2025
	The epidemiological landscape of bloodstream infections in children undergoing chemotherapy or haematopoietic cell transplantation: A retrospective study by Infectious Diseases Working Group of Italian Association of Pediatric Hematology and Oncology (AIEOP).	Baccelli F, Compagno F, Tridello G, Delle Cave F, Zama D, Masetti R, Petris MG, Chiusaroli L, Spadea M, Trevisan F, Colombini A, Conci S, Meazza C, Muggeo P, Micheletti MV, Pancaldi A, Mura R, Onofrillo D, De Santis R, La Spina M, Castagnola E, Perruccio K, Barone A, Giurici N, Petrone A, Mercolini F, Rinieri S, Cesaro S.	Br J Haematol	10.1111/bjh.70036	2025
	The effect of aging in thin films in the picosecond sonar experiment.	Vesela P, Hlubuckova M, Kanclir V, Vaclavik J, Zidek K.	Sci Rep	10.1038/s41598-025-14534-7	2025
	Characterisation and saccharide mapping of polysaccharides from four common Polygonatum spp.	Zhao P, Li X, Wang Y, Yan L, Guo L, Huang L, Gao W.	Carbohydr Polym	10.1016/j.carbpol.2020.115836	2020
	Metabolic engineering for sustainable xylitol production from diverse carbon sources in Pichia pastoris.	Lu X, Chang M, Li X, Cao W, Zhuang Z, Wu Q, Yu T, Yu A, Tang H.	Microb Cell Fact	10.1186/s12934-025-02683-3	2025
	High-efficiency sparse convolution operator for event-based cameras.	Zhang S, Zha F, Wang X, Li M, Guo W, Wang P, Li X, Sun L.	Front Neurorobot	10.3389/fnbot.2025.1537673	2025
	Pyrolysis of various phytoremediation residues for biochars: Chemical forms and environmental risk of Cd in biochar.	Zhang Y, Chen Z, Xu W, Liao Q, Zhang H, Hao S, Chen S.	Bioresour Technol	10.1016/j.biortech.2019.122581	2020
Pathogenicity	Bacteriocin of Pediococcus acidilactici HW01 Inhibits Biofilm Formation and Virulence Factor Production by Pseudomonas aeruginosa.	Lee DH, Kim BS, Kang SS.	Probiotics Antimicrob Proteins	10.1007/s12602-019-09623-9	2020
	Influence of Various Fruit Preservation Methods on the Phenolic Composition and Antioxidant Activity of Prunus spinosa L. Fruit Extract	Sallustio V, Marto J, Goncalves L, Mandrone M, Chiocchio I, Protti M, Mercolini L, Luppi B, Bigucci F, Abruzzo A, Cerchiara T.	Plants (Basel)		2025
	Development of an FTP-LAMP assay based on TaqMan real-time PCR and LAMP for the specific detection of Xylella fastidiosa De Donno and mulberry strains in both plants and insect vectors.	Elbeaino T, Incerti O, Dakroub H, Valentini F, Huang Q.	J Microbiol Methods	10.1016/j.mimet.2020.105992	2020
	Extraction, characterization and biological properties of polysaccharide derived from green seaweed "Chaetomorpha linum" and its potential application in Tunisian beef sausages.	Hamzaoui A, Ghariani M, Sellem I, Hamdi M, Feki A, Jaballi I, Nasri M, Amara IB.	Int J Biol Macromol	10.1016/j.ijbiomac.2020.01.009	2020
	Evaluating the microgap and sealing capability in four implant systems with different interlockings under different tightening torques: an in-vitro study.	Mousa MA, Alshubrmi H, Issrani R, Alzarea BK.	J Adv Prosthodont	10.4047/jap.2024.16.6.336	2024
	Impact of Oviposition Sequence and Host Egg Density on Offspring Emergence and Interspecific Competition in Two Species of Trichogramma Parasitoids.	Wang Y, Iqbal A, Ahmed KS, Zhang ZK, Cui J, Zhang C.	Insects	10.3390/insects16020214	2025
	A Mitochondrially Related Plastidial Transporter Regulates Photosynthesis in the Diatom Phaeodactylum tricornutum.	Giustini C, Dal Bo D, Storti M, Van Vlierberghe M, Baurain D, Cardol P, Zhang Y, Fernie AR, Fitzpatrick D, Aro EM, Allorent G, Albanese P, Tolleter D, Curien G, Finazzi G.	Physiol Plant	10.1111/ppl.70640	2025
	The Secret of Secrets: Carbonic Anhydrase Concentration in Lizards' Femoral Gland Secretions Is Tuned to Environmental Conditions.	Mangiacotti M, Fumagalli M, Moreno-Rueda G, Zamora-Camacho FJ, Martin J, Sacchi R.	Ecol Evol	10.1002/ece3.72023	2025
	Diversity of Antifungal Properties in Bacterial Isolates from Different Plant Species Growing Across Uzbekistan.	Shodmonova MK, Muhammadova DA, Aytenov IS, Isokulov MZ, Bozorov TA, Zhang D, Abduraimov OS, Murodova SM, Melikuziev FA, Ochilov BO, Meliev SK.	Microorganisms	10.3390/microorganisms13051161	2025
	Hair Shaft Abnormalities as a Dermoscopic Feature of Mycosis Fungoides: Pilot Results.	Jasinska M, Czuwara J, Lortkipanidze N, Michalczyk A, Borkowska B, Gajda-Mroz P, Kurzeja M, Olszewska M, Rudnicka L, Rakowska A.	Dermatol Ther (Heidelb)	10.1007/s13555-024-01206-z	2024
Pathogenicity	Pseudoplagiostoma Causing Leaf Spot Disease in Key Tropical Fruit Crops in Thailand.	Haituk S, Karunarathna A, Wongwan T, Promthep T, Sittihan S, Ariyawansa HA, Nakashima C, Cheewangkoon R.	Plants (Basel)	10.3390/plants13233379	2024
	Sustainable utilization of bovine adipose tissue derivatives as robust antimicrobial agents against Methicillin-resistant Staphylococcus aureus.	Alcici MAI, Abdelhaleem SW, Fahim KM, Saleh NM, Farag HS.	BMC Microbiol	10.1186/s12866-025-03747-5	2025
	First Record of Psorophora ferox In Durango State, Mexico.	Duarte-Andrade M, Vazquez-Marroquin R, Chan-Chable RJ, Siller-Rodriguez QK, Sanchez-Ramos FJ, Valdes-Perezgasga MT, Gonzalez-Acosta C, Correa-Morales F, Ortega-Morales AI.	J Am Mosq Control Assoc	10.2987/19-6822.1	2019
Phylogeny	Identification and Characterization of Pestalotioid Fungi Causing Leaf Spots on Mango in Southern China.	Shu J, Yu Z, Sun W, Zhao J, Li Q, Tang L, Guo T, Huang S, Mo J, Hsiang T, Luo S.	Plant Dis	10.1094/pdis-03-19-0438-re	2020
	Effects of different water and fertilizer treatments on the matrix properties and plant growth of tailings waste.	Li Y, Yang Y, He J, Guo S, An X, Li Y, Guo R, Lin Y, Zhang R.	Sci Rep	10.1038/s41598-025-87629-w	2025
	Phlorotannin Supplement Improves Scopolamine-Induced Memory Dysfunction by Rescuing Synaptic Damage in Mice.	Kim M, Lee H, Kwon S, Cho S, Um MY.	J Microbiol Biotechnol	10.4014/jmb.2407.07009	2024
	Engineering of Substrate-Binding Domain to Improve Catalytic Activity of Chondroitin B Lyase with Semi-Rational Design.	Tian M, Xu YY, Li YN, Yu S, Wang YL, Ma XL, Zhang YW.	Curr Issues Mol Biol	10.3390/cimb46090591	2024
	Nutshell Combustion Soot as a Sustainable Carbon Material: From Morphology to Electrochemical and Adsorptive Performance.	Olawale SH, Alabdo F, Kraiya C, Darwish IA, Aly Saad Aly M, Alahmad W.	ACS Omega	10.1021/acsomega.5c04992	2025
Enzymology	Detection of Leishmania DNA in Sand Flies (Diptera: Psychodidae) From a Cutaneous Leishmaniasis Outbreak Area in Northeastern Brazil.	Da Silva YY, Sales KGDS, Miranda DEO, Figueredo LA, Brandao-Filho SP, Dantas-Torres F.	J Med Entomol	10.1093/jme/tjz189	2020
	Chemometric evaluation of inorganic and organic parameters found in Rosaceae plants proposed as food supplements	Zeiner M, Juranovic Cindric I, Nemet I, Sola I, Fiedler H.	Food Chem X		2024
	Sea cucumber sulfated polysaccharides extract potentiates the anticancer effect of 5- fluorouracil on hepatocellular carcinoma cells.	Ismail SE, Hussein NA, Rashad MM, El-Sikaily AM, Hassanin AEA, El-Fakharany EM.	Sci Rep	10.1038/s41598-025-06496-7	2025
	Exploring the Bacterial Microbiome of High-Moisture Plant-Based Meat Substituted Soybean Flour with Mung Bean Protein and Duckweed Powder.	Klinsoda J, Thurakit T, Tongkhao K, Treesuwan K, Yodin K, Kantrong H.	Biology (Basel)	10.3390/biology14060735	2025
	Enhanced Quinolone Resistance and Differential Expression of Efflux Pump nor Genes in Staphylococcus aureus Grown in Platelet Concentrates.	Paredes C, Truong-Bolduc QC, Wang Y, Hooper DC, Ramirez-Arcos S.	Antibiotics (Basel)	10.3390/antibiotics14070635	2025
Genetics	The Construction of a Standard Karyotype of Intermediate Wheatgrass and Its Potential Progenitor Species.	Wang L, Liang S, Qi F, Bao Y, Wang RR, Li X.	Plants (Basel)	10.3390/plants14020196	2025
	Intermediates of Hydrogen Peroxide-Assisted Photooxidation of Salicylic Acid: Their Degradation Rates and Ecotoxicological Assessment.	Gackowska A, Studzinski W, Shyichuk A.	Int J Mol Sci	10.3390/ijms26020697	2025
	Anatomical and Digital Image Analysis of Flavonoid-Mediated Grain Coloration in Rye (Secale cereale L.)	Zykin P, Andreeva E, Tsvetkova N, Bulanov A, Voylokov A.	Plants (Basel)		2025
	Culicidae Fauna (Diptera: Culicomorpha) of the Municipality of Mazagão, Amapá, in the Brazilian Amazon.	Nascimento RED, Dias DD, Nascimento BLSD, Costa TSD, Souto RNP, Casseb LMN, Neto JPN, Carvalho VL.	Insects	10.3390/insects16101036	2025
	Research Note: Preliminary results, first detection of Enterococcus cecorum from environmental samples by streaking on X-Gluc containing selective media.	Tessin J, Rohde J, Jung A, Kemper N, Schulz J.	Poult Sci	10.1016/j.psj.2023.103253	2024
	LF-NMR for Assessing the Influence of Cryoprotectant Additives on Functional Properties and Feasibility of 3D Printing of Atlantic Cod (Gadus morhua) Surimi.	Napitupulu RJ, Arason S, Tomasson T, Gudjonsdottir M.	Magn Reson Chem	10.1002/mrc.70018	2025
Pathogenicity	Protective effect of Polygonatum sibiricum against cadmium-induced testicular injury in mice through inhibiting oxidative stress and mitochondria-mediated apoptosis.	Han C, Zhu Y, Yang Z, Fu S, Zhang W, Liu C.	J Ethnopharmacol	10.1016/j.jep.2020.113060	2020
Pathogenicity	Short communication: Screening inhibition of dairy-relevant pathogens and spoilage microorganisms by lactose oxidase.	Lara-Aguilar S, Alcaine SD.	J Dairy Sci	10.3168/jds.2019-16757	2019
	Heparin as a molecular spacer immobilized on microspheres to improve blood compatibility in hemoperfusion	Dang Q, Li CG, Jin XX, Zhao YJ, Wang X.	Carbohydrate polymers.		2019
	Silver Nanoparticles Functionalized with Polymeric Substances to Reduce the Growth of Planktonic and Biofilm Opportunistic Pathogens.	Solomon M, Holban AM, Balaceanu-Gurau B, Ditu LM, Alberts A, Grumezescu AM, Manolescu LSC, Mihai MM.	Int J Mol Sci	10.3390/ijms26093930	2025
	RETRACTED: Etiological characteristics of wound infection in severe trauma patients and logistic regression analysis of influencing factors of infection.	Pan X, Mo L, He X.	Int Wound J	10.1111/iwj.14682	2024
	Physicochemical properties and immunological activities of polysaccharides from both crude and wine-processed Polygonatum sibiricum.	Sun T, Zhang H, Li Y, Liu Y, Dai W, Fang J, Cao C, Die Y, Liu Q, Wang C, Zhao L, Gong G, Wang Z, Huang L.	Int J Biol Macromol	10.1016/j.ijbiomac.2019.11.166	2020
	Could Horizontal Gene Transfer Explain 5S rDNA Similarities Between Frogs and Worm Parasites?	Gatto KP, Targueta CP, Vittorazzi SE, Lourenco LB.	Biomolecules	10.3390/biom15071001	2025
	Antioxidant capacities and in vitro anti-microbial activities of rice (Oryza sativa var Bajong) from Borneo.	Lam XQ, Khong HY, Tay SP, Fong IL.	BMC Chem	10.1186/s13065-025-01453-x	2025
Enzymology	Crystal structure determination of Pseudomonas stutzeri A1501 endoglucanase Cel5A: the search for a molecular basis for glycosynthesis in GH5_5 enzymes.	Dutoit R, Delsaute M, Collet L, Vander Wauven C, Van Elder D, Berlemont R, Richel A, Galleni M, Bauvois C.	Acta Crystallogr D Struct Biol	10.1107/s2059798319007113	2019
Metabolism	Bacterial proteolysis of casein leading to UHT milk gelation: An applicative study.	D'Incecco P, Brasca M, Rosi V, Morandi S, Ferranti P, Picariello G, Pellegrino L.	Food Chem	10.1016/j.foodchem.2019.04.066	2019
Metabolism	The endoparasitoid Psyllaephagus arenarius benefits from ectoparasitic venom via multiparasitism with the ectoparasitoid Tamarixia lyciumi.	Wu PX, Ma BX, Wu FM, Xu J, Zhang RZ.	Insect Sci	10.1111/1744-7917.12704	2020
	Chemical Composition of Patrinia scabiosifolia Flower Absolute and Its Migratory and Proliferative Activities in Human Keratinocytes.	Hwang DI, Won KJ, Kim DY, Kim HB, Li Y, Lee HM.	Chem Biodivers	10.1002/cbdv.201900252	2019
	Age structure of cohorts of mosquitoes from the field using shortwave infrared spectroscopy before and after ULV adulticide treatment.	Swab CL, Alto BW, Kluiters G, Cornine FH, Telford SR.	Parasit Vectors	10.1186/s13071-025-06873-1	2025
	Carbon capture, photosynthesis, and leaf gas exchange of shade tree species and Arabica coffee varieties in coffee agroforestry systems in Veracruz state, Mexico.	Cabrera-Santos D, Davila P, Rodriguez-Arevalo I, Ruiz-Flores A, Vazquez-Medrano J, Sampayo-Maldonado S, Ordonez-Salanueva C, Gianella M, Bell E, Toledo-Garibaldi M, Manson R, Vazquez-Corzas FG, Cobos-Silva J, Flores Ortiz CM, Ulian T.	PeerJ	10.7717/peerj.20255	2025
	Electrophysiological Insights into Antibiotic Translocation and Resistance: The Impact of Outer Membrane Proteins.	Ghai I.	Membranes (Basel)	10.3390/membranes14070161	2024
Phylogeny	Phylosymbiosis in Seven Wild Fish Species Collected Off the Southern Coast of Korea: Skin Microbiome Most Strongly Reflects Evolutionary Pressures.	Han GH, Yu J, Kang MJ, Park MJ, Noh CH, Kim YJ, Kwon KK.	Microb Ecol	10.1007/s00248-024-02467-z	2024
Phylogeny	Psiloboletinus is an independent genus sister to Suillus.	Wu G, Wu K, Qi LL, Morozova OV, Alexandrova AV, Gorbunova IA, Li Y, Liu JW, Yang ZL.	Mycologia	10.1080/00275514.2019.1681885	2020
Metabolism	Identification and characterisation of anti - Pseudomonas aeruginosa proteins in mucus of the brown garden snail, Cornu aspersum.	Pitt SJ, Hawthorne JA, Garcia-Maya M, Alexandrovich A, Symonds RC, Gunn A.	Br J Biomed Sci	10.1080/09674845.2019.1603794	2019
	Wounding and Phospholipase C Inhibition: Evaluation of the Alkaloid Profiling in Opium Poppy.	Hans B, Balazova E, Dokupilova S, Mikus P, Balazova A, Kubikova R, Oblozinsky M.	Plants (Basel)	10.3390/plants14101413	2025
	Association between ischemic stroke and pyogenic spondylitis in Korea: Nationwide longitudinal cohort study.	Lee SH, Kim H, Han IB, Sheen SH, Hong JB, Sohn S.	J Cerebrovasc Endovasc Neurosurg	10.7461/jcen.2023.e2022.09.001	2023
Metabolism	Transposon mutagenesis in Pseudomonas fluorescens reveals genes involved in blue pigment production and antioxidant protection.	Andreani NA, Carraro L, Zhang L, Vos M, Cardazzo B.	Food Microbiol	10.1016/j.fm.2019.03.028	2019
	Interspecies comparison of three moss species (Hylocomium splendens, Pleurozium schreberi, and Isothecium stoloniferum) as biomonitors of trace element deposition.	Cowden P, Aherne J.	Environ Monit Assess	10.1007/s10661-019-7354-y	2019
	In vitro evaluation of antimicrobial, antitumor, and anti-SARS-cov-2 properties of cellulase enzyme produced by Aspergillus niger.	Abdelnabi MS, Assar NH, Shahat AS, Kutkat O, Bahy R.	Biochem Biophys Rep	10.1016/j.bbrep.2025.102080	2025
	Uclacyanin MtUC1 Is Involved in the Regulation of Nodule Senescence in Medicago truncatula.	Wang L, Zhang M, Tan W, Yang Z, Zhao S, Jia M, Wei G, Chou M.	Mol Plant Pathol	10.1111/mpp.70171	2025
	Paederia scandens extract alleviates obesity via modulating the gut microbiota and serum metabolome disorder.	Yang Y, Si J, Mo J, Li J, Pan B, Pan Y, Jiang L, Wang D, Feng X.	Front Microbiol	10.3389/fmicb.2025.1554537	2025
	An Advanced Adhesive Electrolyte Hydrogel Intended for Iontophoresis Enhances the Effective Delivery of Glycolic Acid Via Microbeads.	Kazharskaia M, Yu Y, Liu C.	Gels	10.3390/gels11090682	2025
	In Vitro Screening of NaCl-Tolerant Dark Septate Endophytes and Their Growth-Promoting Effects on Anemone tomentosa.	Jin X, Xu L, Dong M, Song Z, Zhang X, Liu W, Xu J, Li Y.	Microorganisms	10.3390/microorganisms13061303	2025
	Mining Arylsulfatase from Genome-Scale Metabolic Pathways of Pseudoalteromonas sp. SR43-6 and Its Agar-Based Desulfurization Applications.	Li S, Guo Y, Jiang H, Zhang H, Li J, Chen Y, Li J, Mao X, Wang M.	ACS Omega	10.1021/acsomega.5c01356	2025
	Ecotoxicological health risk analysis of different fish species from the Black Sea coast of Türkiye.	Onel ES, Turkmen M, Kalipci E.	Sci Rep	10.1038/s41598-025-87875-y	2025
	Impact of Graphene Layers on Genetic Expression and Regulation within Sulfate-Reducing Biofilms.	Gopalakrishnan V, Saxena P, Thakur P, Lipatov A, Sani RK.	Microorganisms	10.3390/microorganisms12091759	2024
	Bacteriophage LDT325 enhances Pseudomonas syringae tolerance by improving antioxidant defense in tea plant [Camellia sinensis (L.) O. Kuntze].	Liu L, Huang A, Zhang H, Li Y, Wang L.	Front Microbiol	10.3389/fmicb.2024.1525040	2024
	Monoclonal Antibodies Against the Capsular Polysaccharides A, C, Y, W, and X of Neisseria meningitidis: A Platform for the Quality Control of Meningococcal Vaccines.	Gonzalez E, Reyes F, Otero O, Camacho F, Cuello M, Ramirez F, Acevedo R.	Methods Mol Biol	10.1007/978-1-4939-9202-7_13	2019
	Glycan degradation in Polygonati Rhizoma: Effects of traditional 'nine steaming and nine basking' on low molecular weight Fructans and polysaccharides.	Mei X, Xia J, Li W, Wu Y, Cheng H, Chen S, Ye X, Chen J.	Food Chem X	10.1016/j.fochx.2024.102131	2025
	Diversity and natural infection of phlebotomine sand flies (Diptera, Psychodidae) in an endemic area of American tegumentary leishmaniasis in southeastern Bahia, Brazil.	Cova BO, de Oliveira LA, Lima Machado PR, de Carvalho EM, Monte-Alegre AF, Schriefer A.	Parasit Vectors	10.1186/s13071-025-06717-y	2025
	Biochemical characterisation supports a central role for Oep80 from Arabidopsis thaliana in chloroplastic beta-barrel protein assembly.	Durant RJ, Jarvis RP, Bolla JR.	Commun Biol	10.1038/s42003-025-08689-2	2025
	Characterization of a Natural Accession of Elymus sibiricus with In Situ Hybridization and Agronomic Evaluation.	Liu Y, Ding J, Wu C, Song W, Zhao X, Zhao H, Qu Y, Jin H, Zhang R, Li M, Yan X, Zhu L, Bao Y, Liu D, Li X, Cui L, Li H, Zhang Y.	Plants (Basel)	10.3390/plants14010075	2024
	Fault-scale crustal structure across the Dunhua-Mishan fault (Tanlu northern segment) constrained from teleseismic P-wave receiver functions.	Liu Q, Lu Z, Zhang G, Lu M.	Sci Rep	10.1038/s41598-024-56620-2	2024
	Novel complete methanogenic pathways in longitudinal genomic study of monogastric age-associated archaea.	Feehan B, Ran Q, Dorman V, Rumback K, Pogranichniy S, Ward K, Goodband R, Niederwerder MC, Lee STM.	Anim Microbiome	10.1186/s42523-023-00256-6	2023
	Metabolomics combined with network pharmacology reveals the anti-hepatoma effects of terpenoids from Polygonatum kingianum var. grandifolium and Polygonatum sibiricum Redouté as well as differences in their terpenoid metabolites	Wang X, Wan X, Zhu T, Cui L, Xiao Q.	BMC Plant Biol		2025
	Risk of Obstructive Sleep Apnea Syndrome in Psoriasis Patients.	Kabeloglu Ilbay V, Tas B, Altuntas M, Atakli HD, Soysal A.	Arch Iran Med		2019
	Exposure to low or high light intensity affects pituitary-testicular activity in the fish Oreochromis mossambicus	Konkal P, Ganesh CB.	Aquaculture	10.1016/j.aquaculture.2018.07.043	2018
	CsPRMT5-mediated histone H4R3 dimethylation negatively regulates resistance to gray blight in tea plants (Camellia sinensis L.).	Peng H, Wang Y, Zhu B, Wang Y, Han M, Zhang S, Yang T, Wang F, Zhang Z.	Hortic Res	10.1093/hr/uhaf100	2025
	Coccinonectria pachysandricola, Causal Agent of a New Foliar Blight Disease of Sarcococca hookeriana.	Salgado-Salazar C, Shiskoff N, LeBlanc N, Ismaiel AA, Collins M, Cubeta MA, Crouch JA.	Plant Dis	10.1094/pdis-09-18-1676-re	2019
	Genome-wide identification and expression pattern analysis of the chloride channel gene family in potato (Solanum tuberosum L.) under salt stress.	Gong H, Wang H, Chen J, Dusengemungu L, Feng Z.	Front Plant Sci	10.3389/fpls.2025.1703856	2025
	Structural characterization and physicochemical properties of grain amaranth starch.	Shen W, Yang J, Wang Z, Liu B.	Food Chem X	10.1016/j.fochx.2024.101723	2024
	Dysfunctional digestive tract highlights the metabolic hallmarks of nanoplastic-exacerbated Parkinson's pathology.	Liang X, Wang Y, Andrikopoulos N, Ke PC, Li Y.	NPJ Parkinsons Dis	10.1038/s41531-025-01145-2	2025
	Identification of 2,3-oxidosqualene cyclase gene in Eleutherococcus senticosus and its regulatory mechanism in saponin synthesis.	Cui Y, Ma J, Jiao M, Zhao X, Ding J, Feng C, Liu P, Long Y, Xing Z.	Hortic Res	10.1093/hr/uhaf133	2025
	Resveratrol synthase homologs participate in infection of Nicotiana benthamiana by pathogenic plant viruses and fungi.	Meng Z, Wang H, Guo G, Miao J, Liu J, Zhou H, Zhao M, Dong B.	Front Microbiol	10.3389/fmicb.2025.1534785	2025
	Further Insights into the Measurement of Free Polysaccharide in Meningococcal Conjugate Vaccines.	Beresford NJ, De Benedetto G, Lockyer K, Gao F, Burkin K, Lalwani K, Bolgiano B.	Vaccines (Basel)	10.3390/vaccines13020167	2025
	Efficacy Study of Propolis Eutectic Extract in Gel Formulations for the Treatment of Bacterial Skin Diseases in Dogs.	Svetikiene D, Jokubaite M, Zamokas G, Babickaite L, Siugzdiniene R, Ramanauskiene K.	Animals (Basel)	10.3390/ani15101434	2025
	Psoriasis and Atopic Dermatitis "Resistant" to Topical Treatment Responds Rapidly to Topical Desoximetasone Spray.	Hogue L, Cardwell LA, Roach C, Felix KH, Oussedik E, Richardson I, Feldman SR.	J Cutan Med Surg	10.1177/1203475418818082	2019
	Abscisic Acid Metabolizing Rhodococcus sp. Counteracts Phytopathogenic Effects of Abscisic Acid Producing Botrytis sp. on Sunflower Seedlings	Shaposhnikov A, Yuzikhin O, Azarova T, Sekste E, Sazanova A, Vishnevskaya N, Shahnazarova V, Guro P, Lebedinskii M, Safronova V, Gogolev Y, Belimov A.	Plants (Basel)		2025
	Antibacterial properties of copper-tantalum thin films: The impact of copper content and thermal treatment on implant coatings.	Azamatov B, Dzhes A, Borisov A, Kaliyev D, Maratuly B, Sagidugumar A, Alexandr M, Turlybekuly A, Plotnikov S.	Heliyon	10.1016/j.heliyon.2024.e41130	2025
	Morphological and Phylogenetic Analyses Reveal Dictyostelids (Cellular Slime Molds) Colonizing the Ascocarp of Morchella.	Hu WS, Jiang LL, Liu P, Zhang XY, Wei W, Du XH.	J Fungi (Basel)	10.3390/jof10100678	2024
	Halocercus lagenorhynchi infection in a stranded striped dolphin Stenella coeruleoalba (Meyen, 1833) on the Southwest coastline of India.	Sarlin PJ, Morris S, Geethambika SB, Gopi L, Muraleedharan M, Thomas JA, Savitha G, Joseph P.	J Parasit Dis	10.1007/s12639-024-01646-6	2024
Phylogeny	Updating the Species Diversity of Pestalotioid Fungi: Four New Species of Neopestalotiopsis and Pestalotiopsis.	Zhang W, Li Y, Lin L, Jia A, Fan X.	J Fungi (Basel)	10.3390/jof10070475	2024
	Soil Organic Carbon, Aggregation, and Microbial Community Structure in Annual and Perennial Biofuel Crops	McGowan AR, Nicoloso RS, Diop HE, Roozeboom KL, Rice CW.	Agron J	10.2134/agronj2018.04.0284	2019
	Heparin as a molecular spacer immobilized on microspheres to improve blood compatibility in hemoperfusion.	Dang Q, Li CG, Jin XX, Zhao YJ, Wang X.	Carbohydr Polym	10.1016/j.carbpol.2018.08.067	2019
	Regulation of winter wheat-originated antifreeze glycoprotein on rooster spermatozoa freezability.	Zong Y, Sun Y, Li Y, Han X, Ma T, Zhao Y, Yuan J, Ma H, Ma L, Chen J.	Poult Sci	10.1016/j.psj.2024.104053	2024
	The impact of active components from Piper sarmentosum on the growth, intestinal barrier function, and immunity of broiler chickens.	Zhou L, Hou G, Zhou H, Abouelezz K, Ye Y, Wang D.	Anim Biosci	10.5713/ab.24.0736	2025
	Mechanism of DNA degradation by CBASS Cap5 endonuclease immune effector	Rechkoblit O, Sciaky D, Ni M, Li Y, Kottur J, Fang G, Aggarwal A.	Nat Commun		2025
	Studies on Quality Deterioration and Metabolomic Changes in Oysters Induced by Spoilage Bacteria During Chilled Storage.	Dou H, Zhu W, Chen S, Zou Y, Xia X.	Foods	10.3390/foods14020193	2025
	Prosopagnosia and the role of face-sensitive areas in race perception.	Schaller P, Richoz AR, Duncan J, de Lissa P, Caldara R.	Sci Rep	10.1038/s41598-025-88769-9	2025
	Chitin Translocation Is Functionally Coupled with Synthesis in Chitin Synthase.	Niu S, Qi L, Zhang X, He D, Li P, Wang H, Bi Y.	Int J Mol Sci	10.3390/ijms252111667	2024
	Probiotic, antimicrobial and anticancer properties of Lysinibacillus macroides, Kurthia huakuii, and Enterococcus faecium isolated from freshwater snail gut microbiota.	Shaker RAE, Hashem RA, Hassan M, Ibrahim AM, Ragab YM, Khattab RA.	BMC Biotechnol	10.1186/s12896-025-01038-5	2025
	Characterizing the Potential of Phosphonium-Based Ionic Liquids for CO₂ Capture via Multiscale Modeling.	Rodriguez-Reartes SB, Llovell F.	Ind Eng Chem Res	10.1021/acs.iecr.5c01361	2025
	An Emerging Global Threat of Mycotic Keratitis Caused by Uncommon Fungal Species: A Systematic Review and Meta-Analysis.	Gautam M, Lal B, Patel S, Mohan RR, Barathi A, Yadav N, Verma SK, Nyodu R, Sampath A, Koshti D, Sharma B.	Transl Vis Sci Technol	10.1167/tvst.14.4.4	2025
	beta-Elemonic acid mediated enrichment of Paenibacillus to help Salvia miltiorrhiza Bunge alleviate drought stress.	Jia HM, Zhou J, Zhao WC, He DM, Yan ZY.	Microbiome	10.1186/s40168-025-02154-2	2025
	Aberrant Expression of BTLA, CD160, SPN, TIM-3, VISTA and TIGIT in Chronic Lymphocytic Leukemia and Psoriasis Patients Compared to Healthy Volunteers.	Skorka K, Wdowiak-Filip A, Stasiak G, Bartosinska J, Krasowska D, Giannopoulos K.	Cancers (Basel)	10.3390/cancers17132116	2025
	Trend of Changes in Chloramphenicol Resistance during the Years 2017-2020: A Retrospective Report from Israel.	Rohana H, Hager-Cohen A, Azrad M, Peretz A.	Antibiotics (Basel)	10.3390/antibiotics12020196	2023
Pathogenicity	Ethanolic extract of Parkia speciosa pods exhibits antioxidant and anti-inflammatory properties in lipopolysaccharide-induced murine macrophages by inhibiting the p38 MAPK pathway.	Samrit T, Changklungmao N, Sangpairoj K, Buddawong A, Kueakhai P, Chuanboon K, Sobhon P, Pranweerapaiboon K.	Heliyon	10.1016/j.heliyon.2024.e39641	2024
Phylogeny	Genome-Wide Identification and Evolutionary Analysis of Functional BBM-like Genes in Plant Species.	Hong Z, Zhu L, Liu C, Wang K, Rao Y, Lu H.	Genes (Basel)	10.3390/genes15121614	2024
Metabolism	Roles of polymorphic cathelicidins in innate immunity of soft-shell turtle, Pelodiscus sinensis.	Shi N, Cai S, Gao J, Qiao X, Yang H, Wang Y, Yu H.	Dev Comp Immunol	10.1016/j.dci.2018.11.010	2019
	Pathways for accidental biocontrol: The human-mediated dispersal of insect predators and parasitoids.	Fenn-Moltu G, Liebhold AM, Weber DC, Bertelsmeier C.	Ecol Appl	10.1002/eap.3047	2024
	Functional and Physiological Characterization of Tyrosine Decarboxylases from Olea europaea L. Involved in the Synthesis of the Main Phenolics in Olive Fruit and Virgin Olive Oil.	Luaces P, Sanchez R, Exposito J, Perez-Pulido AJ, Perez AG, Sanz C.	Int J Mol Sci	10.3390/ijms252010892	2024
	Hydrogel-polymersome composites as a sensing platform for monitoring food spoilage.	John C, Dos Santos EC, Wehr RP, Messmer D, Palivan CG, Dinu IA.	Nanoscale	10.1039/d4nr05177g	2025
	Opistholobetines (Digenea: Opecoelidae) in Australian tetraodontiform fishes.	Martin SB, Ribu D, Cutmore SC, Cribb TH.	Syst Parasitol	10.1007/s11230-018-9826-9	2018
	Biologics targeting IL-17 sharply reduce circulating T follicular helper and T peripheral helper cell sub-populations in psoriasis.	Tsiogkas SG, Mavropoulos A, Dardiotis E, Zafiriou E, Bogdanos DP.	Front Immunol	10.3389/fimmu.2024.1325356	2024
Metabolism	Regulation of IAA Biosynthesis in Azospirillum brasilense Under Environmental Stress Conditions.	Molina R, Rivera D, Mora V, Lopez G, Rosas S, Spaepen S, Vanderleyden J, Cassan F.	Curr Microbiol	10.1007/s00284-018-1537-6	2018
	Rowell's Syndrome Triggered by Omeprazole.	Pozharashka J, Dourmishev L, Balabanova M, Vassileva S, Miteva L.	Acta Dermatovenerol Croat		2019
	Soil microbial CO₂ fixation rate disparities with different vegetation at a representative acidic red soil experimental station in China.	Long C, Liu Z, Liu R, Yin L, Tan F, Wang Y, He G.	Front Microbiol	10.3389/fmicb.2024.1480484	2024
	Ratio of Polycation and Serum Is a Crucial Index for Determining the RNAi Efficiency of Polyplexes.	Zhang W, Meng X, Liu H, Xie L, Liu J, Xu H.	ACS Appl Mater Interfaces	10.1021/acsami.7b15797	2017
	Bioactive potential and structural characterization of sulfated polysaccharides from Bullet tuna (Auxis Rochei) by-products.	Jridi M, Mezhoudi M, Abdelhedi O, Boughriba S, Elfalleh W, Souissi N, Nasri R, Nasri M.	Carbohydr Polym	10.1016/j.carbpol.2018.04.038	2018
	Identification and Quantification of a Pneumococcal Cell Wall Polysaccharide by Antibody-Enhanced Chromatography Assay.	Deng JZ, Chen Z, Small J, Yuan Y, Cox K, Tang A, Roman J, Guan L, Feller K, Ansbro F, Vora K.	Vaccines (Basel)	10.3390/vaccines12050469	2024
	Relationship between clinical severity of "new" bronchopulmonary dysplasia and HRCT abnormalities in VLBW infants.	Sung TJ, Hwang SM, Kim MY, Park SG, Choi KY.	Pediatr Pulmonol	10.1002/ppul.24121	2018
	A comprehensive morphometric analysis of pterygospinous and pterygoalar bars on computed tomography images.	Yanarates G, Ozdemir F, Salim H, Ari B.	Medicine (Baltimore)	10.1097/md.0000000000037267	2024
	Identification of two new species and a sexual morph from the genus Pseudopestalotiopsis	Nozawa S, Yamaguchi K, Hoang Yen LT, Van Hop D, Nyunt Phay, Ando K, Watanabe K.	Mycoscience	10.1016/j.myc.2017.02.008	2017
	Synthesis, characterization, and antibacterial activity of novel bis(indolyl)methanes sourced from biorenewable furfurals using gluconic acid aqueous solution (GAAS) as a sustainable catalyst.	Naik C P, G B A, Seikh AH, Dutta S.	RSC Adv	10.1039/d4ra03905j	2024
	The Long-Distance Transport of Jasmonates in Salt-Treated Pea Plants and Involvement of Lipid Transfer Proteins in the Process	Vafina G, Akhiyarova G, Korobova A, Finkina E, Veselov D, Ovchinnikova T, Kudoyarova G.	Int J Mol Sci		2024
	Novel Insights Into the Struggle Against Biofilm: The PsyOmp38 Protein From the Antarctic Marine Bacterium Psychrobacter sp. TAE2020.	Olimpo D, D'Angelo C, Imbimbo P, Morelli M, Tutino ML, Carpentieri A, Monti DM, Notomista E, Parrilli E.	Microb Biotechnol	10.1111/1751-7915.70249	2025
	MSL10 is a high-sensitivity mechanosensor in the tactile sense of the Venus flytrap.	Suda H, Asakawa H, Hagihara T, Ohi S, Segami S, Hasebe M, Toyota M.	Nat Commun	10.1038/s41467-025-63419-w	2025
Metabolism	Symbiotic fungal inoculation promotes the growth of Pinus tabuliformis seedlings in relation to the applied nitrogen form.	Xu L, Li Y, Dai X, Jin X, Zhao Q, Tian B, Zhou Y.	BMC Plant Biol	10.1186/s12870-024-05883-y	2025
	Niches, interspecific associations, and community stability of main understory regeneration species after understory removal in temperate forests.	Zhang Y, Zhou W, Yuan Q, Deng J, Zhou L, Yu D.	Front Plant Sci	10.3389/fpls.2024.1371898	2024
	Epizootics of Pseudomonas anguilliseptica among cultured seabream (Sparus aurata) populations: Control and treatment strategies.	Fadel A, Mabrok M, Aly S.	Microb Pathog	10.1016/j.micpath.2018.04.021	2018
Pathogenicity	Pseudoperonospora cubensis in China: Its sensitivity to and control by oxathiapiprolin.	Miao J, Dong X, Chi Y, Lin D, Chen F, Du Y, Liu P, Liu X.	Pestic Biochem Physiol	10.1016/j.pestbp.2018.03.009	2018
	Synthesis and Evaluation of 1,3-Disubstituted Imidazolidine-2,4,5-triones as Inhibitors of Pyruvate Carboxylase.	Schneider NO, Gilreath K, Henriksen NM, Donaldson WA, Chaudhury S, St Maurice M.	ACS Med Chem Lett	10.1021/acsmedchemlett.4c00183	2024
	Wheat Yellow Mosaic Virus P1 Inhibits ROS Accumulation to Facilitate Viral Infection.	Zhao Y, Yang J, Liu Y, Hu X, Wang X, Yang J, Liu J.	Int J Mol Sci	10.3390/ijms26041455	2025
	Topical delivery of meropenem via spanlastic carbopol gel: in-vitro studies and in-vivo application in pressure ulcers.	Abdelfattah S, Mady FM, Sarhan HA, Khalifa HO, Hashem H, Hassan H, Alkhammash A, Hadiya S, Ibrahem RA, Qelliny MR.	Front Pharmacol	10.3389/fphar.2025.1672677	2025
	Investigating the gut microbiota's influence on psoriasis and psoriatic arthritis risk: a Mendelian randomization analysis.	Yu N, Wang J, Liu Y, Guo Y.	Precis Clin Med	10.1093/pcmedi/pbad023	2023
	Safety and adherence of early oral immunotherapy for peanut allergy in a primary care setting: a retrospective cross-sectional study.	Landry V, Lewis R, Lewis W, MacDonald L, Carson B, Chandra K, Fraser J, Flewelling AJ, Atkinson P, Vaillancourt C.	Allergy Asthma Clin Immunol	10.1186/s13223-024-00916-5	2024
	Type I interferon responses of common carp strains with different levels of resistance to koi herpesvirus disease during infection with CyHV-3 or SVCV.	Adamek M, Matras M, Dawson A, Piackova V, Gela D, Kocour M, Adamek J, Kaminski R, Rakus K, Bergmann SM, Stachnik M, Reichert M, Steinhagen D.	Fish Shellfish Immunol	10.1016/j.fsi.2019.02.022	2019
	Potential control of forest diseases by solutions of chitosan oligomers, propolis and nanosilver	Silva-Castro I, Martin-Garcia J, Diez J, Flores-Pacheco J, Martin Gil J, Martin-Ramos P.	Eur J Plant Pathol	10.1007/s10658-017-1288-4	2018
	Rapid identification of the purple stem (Ps) gene of Chinese kale (Brassica oleracea var. alboglabra) in a segregation distortion population by bulked segregant analysis and RNA sequencing	Tang Q, Tian M, An G, Zhang W, Chen J, Yan C.	Mol Breed	10.1007/s11032-017-0752-3	2017
	Prevalence of Psoriasis in Children and Adolescents in the United States: A Claims-Based Analysis.	Paller AS, Singh R, Cloutier M, Gauthier-Loiselle M, Emond B, Guerin A, Ganguli A.	J Drugs Dermatol		2018
	Preparation and Application of Shen Ling Cao Composite Particles with Different Structures Based on Co-Spray Drying.	Li Z, Sun C, Sun P, Yang L, Yang Q, Zhu W, Guan Y, Liu W, Ming L.	Pharmaceuticals (Basel)	10.3390/ph18091369	2025
	Monitoring of Newcastle Disease Virus Vaccine Strain Replication in Embryonated Chicken Eggs by Reverse Transcription-Polymerase Chain Reaction.	Ghadimipour R, Taghizadeh M, Bashashati M, Ebrahimi MM, Samadi A, Mohammadzadeh S.	Arch Razi Inst	10.22092/ari.2022.359142.2377	2023
Enzymology	Characterization of a Pyranose Oxidase/C-Glycoside Oxidase from Microbacterium sp. 3H14, Belonging to the Unexplored Clade II of Actinobacterial POx/CGOx.	Martschini A, Kostelac A, Haltrich D, Peterbauer CK.	Biomolecules	10.3390/biom14121510	2024
	Four New or Newly Recorded Species from Freshwater Habitats in Jiangxi Province, China.	Xu CY, Song HY, Zhou JP, Zhai ZJ, Cui CY, Hu DM.	J Fungi (Basel)	10.3390/jof11010079	2025
	Role of Human Microbiome in Development and Management of Head and Neck Squamous Cell Carcinoma.	Palkovsky M, Modrackova N, Neuzil-Bunesova V, Liberko M, Hlodakova A, Soumarova R.	Cancers (Basel)	10.3390/cancers17132238	2025
Genetics	CRISPR Ribonucleoprotein-Mediated Precise Editing of Multiple Genes in Porcine Fibroblasts.	Guo X, Liu C, Zhao Y, Jiang C, Jin J, Liu Z, Mu Y.	Animals (Basel)	10.3390/ani14040650	2024
	Pan-cancer investigation of psoriasis-related BUB1B gene: genetical alteration and oncogenic immunology.	Li X, Wang W, Ding X.	Sci Rep	10.1038/s41598-023-33174-3	2023
	A novel multiplex qPCR assay for clinical diagnosis of non-human malaria parasites-Plasmodium knowlesi and Plasmodium cynomolgi.	Das R, Vashisht K, Pandey KC.	Front Vet Sci	10.3389/fvets.2023.1127273	2023
	Synergistic effect of Pseudomonas putida and endomycorrhizal inoculation on the physiological response of onion (Allium cepa L.) to saline conditions.	El-Aal MSA, Farag HRM, Elbar OHA, Zayed MS, Khalifa GS, Abdellatif YMR.	Sci Rep	10.1038/s41598-024-71165-0	2024
	Uncovering the Antifungal Potential of Plant-Associated Cultivable Bacteria from the Aral Sea Region against Phytopathogenic Fungi.	Aytenov IS, Bozorov TA, Zhang D, Samadiy SA, Muhammadova DA, Isokulov MZ, Murodova SM, Zakirova OR, Chinikulov BK, Sherimbetov AG.	Pathogens	10.3390/pathogens13070585	2024
Transcriptome	Integrative analysis of the metabolome and transcriptome provides insights into the mechanisms of amino acids and their derivatives biosynthesis in Polygonatum.	Wang X, Cui L, Xiao Q.	PLoS One	10.1371/journal.pone.0327145	2025
	Pr and Pfr structures of plant phytochrome A.	Nagano S, von Stetten D, Guan K, Chen PY, Song C, Barends T, Weiss MS, Feiler CG, Dorner K, de Diego Martinez I, Schubert R, Bielecki J, Brings L, Han H, Kharitonov K, Kim C, Kloos M, Koliyadu JCP, Koua FHM, Round E, Sarma A, Sato T, Schmidt C, Valerio J, Wrona A, Schulz J, de Wijn R, Letrun R, Bean R, Mancuso A, Heyne K, Hughes J.	Nat Commun	10.1038/s41467-025-60738-w	2025
Transcriptome	Integrative methylome and transcriptome analysis to dissect key biological pathways for psoriasis in Chinese Han population.	Tang L, Cheng Y, Zhu C, Yang C, Liu L, Zhang Y, Wen L, Zhang X, Zhou F, Yang S.	J Dermatol Sci	10.1016/j.jdermsci.2018.06.001	2018
Proteome	Comprehensive proteomic profiling of Cucumber mosaic virus infection: identifying key proteins and pathways involved in resistance and susceptibility in melon.	Real N, Garcia-Molina A, Stolze SC, Harzen A, Nakagami H, Martin-Hernandez AM.	BMC Plant Biol	10.1186/s12870-025-06464-3	2025
Enzymology	Physiological and biochemical basis of flower coloration in Aquilegia oxysepala with a functional study of AoDFR08	Meng Y, Si W, Ma T, Chen D, Zhou Y, Bai Y.	BMC Plant Biol		2025
	Immunogenicity of primary and booster MenACWY-TT vaccination in older adults and the importance of IgM	Visser M, van Rooijen D, Wolf J, Beckers L, Ohm M, de Jonge M, Buisman A, den Hartog G.	NPJ Vaccines		2025
	P2Y₂ Inhibition Modifies the Anabolic Response to Exercise in Adult Mice.	Chougule A, Zhang C, Denbow J, Vinokurov N, Mendez D, Vojtisek E, Gardinier J.	Aging Cell	10.1111/acel.14464	2025
Enzymology	Crystal structure of the NADP⁺ and tartrate-bound complex of L-serine 3-dehydrogenase from the hyperthermophilic archaeon Pyrobaculum calidifontis.	Yoneda K, Sakuraba H, Araki T, Ohshima T.	Extremophiles	10.1007/s00792-018-1004-0	2018
Genetics	Genome Analysis of Thinopyrum intermedium and Its Potential Progenitor Species Using Oligo-FISH.	Qi F, Liang S, Xing P, Bao Y, Wang RR, Li X.	Plants (Basel)	10.3390/plants12213705	2023
	Risk for primary cephalosporin resistance in Gram-negative bacteremia.	John P, Shahbazian S, Lainhart WD, Hayes J, Mochon B, Nix DE.	Antimicrob Steward Healthc Epidemiol	10.1017/ash.2023.202	2023
	Histones and histone variant families in prokaryotes.	Schwab S, Hu Y, van Erp B, Cajili MKM, Hartmann MD, Hernandez Alvarez B, Alva V, Boyle AL, Dame RT.	Nat Commun	10.1038/s41467-024-52337-y	2024
Phylogeny	DNA methylation-based subclassification of psoriasis in the Chinese Han population.	Zhou F, Shen C, Hsu YH, Gao J, Dou J, Ko R, Zheng X, Sun L, Cui Y, Zhang X.	Front Med	10.1007/s11684-017-0588-6	2018
	Comparative evaluation on shelf life extension of MAP packed Litopenaeus vannamei shrimp treated with natural extracts	Udayasoorian L, Peter M, K S, C I, Muthusamy S.	Lebensm Wiss Technol	10.1016/j.lwt.2016.11.046	2017
	The separation between mRNA-ends is more variable than expected.	Gerling N, Mendez JA, Gomez E, Ruiz-Garcia J.	FEBS Open Bio	10.1002/2211-5463.13877	2024
Genetics	Analysis of novel high-molecular-weight prolamins from Leymus multicaulis (Kar. et Kir.) Tzvelev and L. chinensis (Trin. ex Bunge) Tzvelev.	Hu X, Dai S, Song Z, Xu D, Wen Z, Wei Y, Liu D, Zheng Y, Yan Z.	Genetica	10.1007/s10709-018-0025-z	2018
	Research progress on the pharmacological activity, biosynthetic pathways, and biosynthesis of crocins.	Hua Z, Liu N, Yan X.	Beilstein J Org Chem	10.3762/bjoc.20.68	2024
	Aflatoxin B1 Control by Various Pseudomonas Isolates.	Papp DA, Kocsube S, Farkas Z, Szekeres A, Vagvolgyi C, Hamari Z, Varga M.	Toxins (Basel)	10.3390/toxins16080367	2024
	Carbon sequestration potential of plantation forests in New Zealand - no single tree species is universally best.	Salekin S, Dickinson YL, Bloomberg M, Meason DF.	Carbon Balance Manag	10.1186/s13021-024-00257-1	2024
	Causal relationship between gut microbiota and puerperal sepsis: a 2-sample Mendelian randomization study.	Liang LD, Li S, Huang MJ, Peng HX, Lu ZJ, Zhang ZH, Su LY, Sooranna SR, Liu Y, Huang ZH.	Front Microbiol	10.3389/fmicb.2024.1407324	2024
	Inhibitory efficacy, production dynamics, and characterization of postbiotics of lactic acid bacteria.	Rahman MM, Sazili AQ, Ahmad SA, Khalil KA, Ismail-Fitry MR, Sarker MSK.	BMC Microbiol	10.1186/s12866-025-04123-z	2025
	Bacillus subtilis Intraspecies Interactions Shape Probiotic Activity Against Salmonella Typhimurium.	Kovacec E, Kraigher B, Podnar E, Lories B, Steenackers H, Mandic-Mulec I.	Microb Biotechnol	10.1111/1751-7915.70065	2024
	Characteristics of phage-plasmids and their impact on microbial communities.	Sayid R, van den Hurk AWM, Rothschild-Rodriguez D, Herrema H, de Jonge PA, Nobrega FL.	Essays Biochem	10.1042/ebc20240014	2024
	Ilheus Virus (ILHV) Resistance in Culex quinquefasciatus from the Northern Region of Brazil.	Reis LAM, Pampolha ABO, Dias DD, Santos MM, Pantoja JAS, Araujo PADS, Silva FSD, Nascimento BLSD, Carvalho VL, Silva EVPD, Nunes Neto JP.	Life (Basel)	10.3390/life14040427	2024
	Nodulation Experiment by Cross-Inoculation of Nitrogen-Fixing Bacteria Isolated from Root Nodules of Several Leguminous Plants.	Cho A, Joshi A, Hur HG, Lee JH.	J Microbiol Biotechnol	10.4014/jmb.2310.10025	2024
	First Record of Psorophora albipes in Quintana Roo, Mexico.	Chan-Chable RJ, Ortega-Morales AI, Martinez-Arce A.	J Am Mosq Control Assoc	10.2987/16-6580.1	2016
	Marine-derived new peptaibols with antibacterial activities by targeting bacterial membrane phospholipids.	Chen S, Liu D, Wang L, Fan A, Wu M, Xu N, Zhu K, Lin W.	Acta Pharm Sin B	10.1016/j.apsb.2025.02.036	2025
	The plasmid-borne hipBA operon of Klebsiella michiganensis encodes a potent plasmid stabilization system.	Shutt-McCabe J, Shaik KB, Hoyles L, McVicker G.	J Appl Microbiol	10.1093/jambio/lxae246	2024
	Can foliar application of soluble monoammonium phosphate effectively alleviate herbicide-induced oxidative stress in key crops?	Viveiros J, Moretti LG, Alves Filho I, Pacola M, Jacomassi LM, Rodrigues VA, Jamal A, Bossolani JW, Portugal JR, Carbonari CA, Crusciol CAC.	Front Plant Sci	10.3389/fpls.2025.1504244	2025
	Non-fluorescent and yellow chlorophyll catabolites in Japanese plum fruits (Prunus salicina, Lindl.).	Roca M, Rios JJ, Chahuaris A, Perez-Galvez A.	Food Res Int	10.1016/j.foodres.2017.07.029	2017
	Research progress on blood compatibility of hemoperfusion adsorbent materials.	Zhang L, Liu G, Xia Q, Deng L.	Front Bioeng Biotechnol	10.3389/fbioe.2024.1456694	2024
Genetics	The host susceptibility/resistance-related genes and gut microbial characteristics in Salmonella pullorum-infected chickens.	Ding J, Zhu J, Zhou H, Yang K, Qin C, Zhang Y, Han C, Yang L, He C, Xu K, Zheng Y, Luo H, Chen K, Zhou W, Jiang S, Liu J, Zhu W, Niu Q, Zhou Z, Wang S, Yu S, Huang Q, Meng H.	Microbiol Spectr	10.1128/spectrum.00392-24	2025
	Risk factors of cardiac device infection: Glove contamination during device procedures.	Kozon I, Riahi S, Lundbye-Christensen S, Thogersen AM, Ejlertsen T, Aaen D, Paulsen KI, Hjortshoj S.	Am J Infect Control	10.1016/j.ajic.2017.03.019	2017
	Environmental monitoring and assessment of antibacterial metabolite producing actinobacteria screened from marine sediments in south coastal regions of Karnataka, India.	Skariyachan S, Garka S, Puttaswamy S, Shanbhogue S, Devaraju R, Narayanappa R.	Environ Monit Assess	10.1007/s10661-017-5999-y	2017
	Potassium silicate and vinasse enhance biometric characteristics of perennial sweet pepper (Capsicum annuum) under greenhouse conditions.	Rady MS, Ghoneim IM, Feleafel MN, Hassan SM.	Sci Rep	10.1038/s41598-024-61454-z	2024
Enzymology	The Mechanism of Aniline Blue Degradation by Short-Chain Dehydrogenase (SDRz) in Comamonas testosteroni.	Zhang C, Huang Y, He J, He L, Zhang J, Yu L, Musazade E, Maser E, Xiong G, Xu M, Guo L.	Molecules	10.3390/molecules29225405	2024
	Structures of Polyhydroxyalkanoate Synthase PhaC from Aeromonas caviae, Producing Biodegradable Plastics.	Chek MF, Kim SY, Mori T, Matsumoto K, Sato S, Hakoshima T.	Angew Chem Int Ed Engl	10.1002/anie.202504626	2025
	Influence of sample preparation methods on FTIR spectra for taxonomic identification of tropical trees in the Atlantic forest.	Cubas Pereira D, Pupin B, de Simone Borma L.	Heliyon	10.1016/j.heliyon.2024.e27232	2024
Genetics	Genomic consequences of intensive inbreeding in miniature inbred pigs.	Chen HM, Zhao H, Zhu QY, Yan C, Liu YQ, Si S, Jamal MA, Xu KX, Jiao DL, Lv MJ, Wang W, Zhao HY, Chen L, Wang MS, Wei HJ.	BMC Genomics	10.1186/s12864-025-11333-2	2025
	Targeted Formation of Biofilms on the Surface of Graphite Electrodes as an Effective Approach to the Development of Biosensors for Early Warning Systems.	Kharkova A, Perchikov R, Kurbanalieva S, Osina K, Popova N, Machulin A, Kamanina O, Saverina E, Saltanov I, Melenkov S, Butusov D, Arlyapov V.	Biosensors (Basel)	10.3390/bios14050239	2024
Enzymology	Shifting the substrate scope of dimeric pyranose oxidase from monosaccharide to glycoside preference through oligomeric state modification.	Kostelac A, Hermann E, Peterbauer C, Oostenbrink C, Haltrich D.	FEBS J	10.1111/febs.70004	2025
	Priming by Insects: Differential Effects of Sympatric and Allopatric Priming upon Plant Performance and Tolerance to Herbivory.	Garrido E, Boege K, Dominguez CA, Fornoni J.	Plants (Basel)	10.3390/plants11243567	2022
Genetics	Comparative Genomics Reveals Intra and Inter Species Variation in the Pathogenic Fungus Batrachochytrium dendrobatidis.	Yacoub MN, Stajich JE.	Genome Biol Evol	10.1093/gbe/evaf114	2025
	On the chemical aspects of the biodelignification of wheat straw with Pycnoporus sanguineus and its combined effects with the presence of Candida tropicalis	Feng NJ, Zhai HM, Lai YZ.	Industrial crops and products.	10.1016/j.indcrop.2016.07.035	2016
	Effects of high-dose glucose oxidase on broiler growth performance, antioxidant function, and intestinal microbiota in broilers.	Jiang Z, Huang Z, Du H, Li Y, Wang M, Chen D, Lu J, Liu G, Mei L, Li Y, Liang W, Yang B, Guo Y.	Front Microbiol	10.3389/fmicb.2024.1439481	2024
	Characterization of Three Types of Elongases from Different Fungi and Site-Directed Mutagenesis.	Wang Y, Chang L, Zhang H, Chen YQ, Chen W, Chen H.	J Fungi (Basel)	10.3390/jof10020129	2024
Enzymology	Activity assays of NnlA homologs suggest the natural product N-nitroglycine is degraded by diverse bacteria.	Strickland KA, Martinez Rodriguez B, Holland AA, Wagner S, Luna-Alva M, Graham DE, Caranto JD.	Beilstein J Org Chem	10.3762/bjoc.20.75	2024
	Xerophilic Aspergillaceae Dominate the Communities of Culturable Fungi in the Mound Nests of the Western Thatching Ant (Formica obscuripes).	Gross RM, Geer CL, Perreaux JD, Maharaj A, Du S, Scott JA, Untereiner WA.	J Fungi (Basel)	10.3390/jof10110735	2024
	The Rapidly Changing Patterns in Bacterial Co-Infections Reveal Peaks in Limited Gram Negatives during COVID-19 and Their Sharp Drop Post-Vaccination, Implying Potential Evolution of Co-Protection during Vaccine-Virus-Bacterial Interplay.	Said KB, Alsolami A, Alshammari KF, Moussa S, Alshammeri F, Alghozwi MH, Alshammari SF, Alharbi NF, Khalifa AM, Mahmoud MR, Alshammari K, Ghoniem ME.	Viruses	10.3390/v16020227	2024
	Synthesis and characterization of hydroxyapatite-zinc oxide nanocomposites incorporating rosemary and thyme essential oils for enhanced bone regeneration and antimicrobial activity.	Burdusel AC, Sarchizian D, Niculescu AG, Holban AM, Popescu RC, Trusca R, Andronescu E.	Rom J Morphol Embryol	10.47162/rjme.65.3.03	2024
	Effective Removal of Cd from Aqueous Solutions Using P-Loaded Ca-Mn-Impregnated Biochar	Qiu C, Wang C, Liu Q, Gao M, Song Z.	Molecules		2023
	Phylogenetic relationships of Pseudohynobius (Urodela, Hynobiidae) inferred from DNA barcoding analysis.	Zhao YY, Su LN, Zhang ZM, Wang XY.	Genet Mol Res	10.4238/gmr.15028155	2016
	Antivirulence Effects of Trans-Resveratrol and Curcumin on Methicillin-Resistant Staphylococcus aureus (MRSA) from Saudi Arabia.	Alqahtani M, Almukainzi M, Alghoribi MF, El-Mahdy AM.	Life (Basel)	10.3390/life14040491	2024
	Enhancing drought resistance in Pinus tabuliformis seedlings through root symbiotic fungi inoculation.	Xu L, He J, Meng Y, Zheng Y, Lu B, Zhang J, Zhou Y.	Front Plant Sci	10.3389/fpls.2024.1446437	2024
	The Combined Toxic Effects of Polystyrene Microplastics and Arsenate on Lettuce Under Hydroponic Conditions.	Mu L, Gao Z, Wang M, Tang X, Hu X.	Toxics	10.3390/toxics13020086	2025
Pathogenicity	Piper sarmentosum Roxb. confers neuroprotection on beta-amyloid (Abeta)-induced microglia-mediated neuroinflammation and attenuates tau hyperphosphorylation in SH-SY5Y cells.	Yeo ETY, Wong KWL, See ML, Wong KY, Gan SY, Chan EWL.	J Ethnopharmacol	10.1016/j.jep.2018.02.025	2018
	Entomological inferences highlight the risk of Leishmania transmission in the urban area of Porto Velho, Rondônia, Brazil.	da Silva MS, Picelli AM, Pereira de Franca K, Galati EAB, Andrade Filho JD, Juliao GR, Dutra-Rego F, Medeiros JF.	PLoS One	10.1371/journal.pone.0309168	2024
	Promising approaches for simultaneous enhancement of medicinally significant benzylisoquinoline alkaloids in opium poppy.	Aghaali Z, Naghavi MR, Zargar M.	Front Plant Sci	10.3389/fpls.2024.1377318	2024
	Exploring the Binding Capacity of Mycelium and Wood-Based Composites for Use in Construction.	Saez D, Grizmann D, Trautz M, Werner A.	Biomimetics (Basel)	10.3390/biomimetics7020078	2022
	Genome-Wide Identification of the SPP/SPPL Gene Family and BnaSPPL4 Regulating Male Fertility in Rapeseed (Brassica napus L.).	Li G, Zhu W, Tian M, Liu R, Ruan Y, Liu C.	Int J Mol Sci	10.3390/ijms25073936	2024
Phylogeny	Sylvatic Mosquito Viromes in the Cerrado Biome of Minas Gerais, Brazil: Discovery of New Viruses and Implications for Arbovirus Transmission.	Maia LJ, Silva AB, Oliveira CH, Campos FS, Silva LAD, Abreu FVS, Ribeiro BM.	Viruses	10.3390/v16081276	2024
	Antibacterial Properties of PMMA/ZnO(NanoAg) Coatings for Dental Implant Abutments.	Rehner Costache AMG, Tudorache DI, Birca AC, Nicoara AI, Niculescu AG, Holban AM, Hudita A, Biclesanu FC, Balaure PC, Pangica AM, Grumezescu AM, Croitoru GA.	Materials (Basel)	10.3390/ma18020382	2025
	Key periodontal pathogens may mediate potential pathogenic relationships between periodontitis and crohn's disease.	Sun B, Wang Y, Wu M, Feng G, Guo T.	BMC Oral Health	10.1186/s12903-024-04425-0	2024
	Cleavage of Bcl-2-associated athanogene by metacaspase determines plant antiviral immunity.	Liang L, Jiang Y, Zhao P, Wang H, Chen X, Lin X, Sun Y, Zhang W, Fang R, Ye J.	Nat Commun	10.1038/s41467-025-64021-w	2025
	Synergistic effects of thermally reduced graphene oxide/zinc oxide composite material on microbial infection for wound healing applications.	Hassen A, Moawed EA, Bahy R, El Basaty AB, El-Sayed S, Ali AI, Tayel A.	Sci Rep	10.1038/s41598-024-73007-5	2024
	Scanning electron microscopy (SEM) reveals high diversity of setae on the hind tibiae and basitarsi of Peruvian Stingless Bees (Apidae: Meliponini).	Marconi M, Vecco-Giove CD, Ormeno Luna J, Cerna Mendoza A, Mancini E, Di Giulio A.	PeerJ	10.7717/peerj.19749	2025
	2-AG-loaded and bone marrow-targeted PCL nanoparticles as nanoplatforms for hematopoietic cell line mobilization.	Kose S, Varan C, Onen S, Nemutlu E, Bilensoy E, Korkusuz P.	Stem Cell Res Ther	10.1186/s13287-024-03902-1	2024
	The Demographic History of Populations and Genomic Imprinting have Shaped the Transposon Patterns in Arabidopsis lyrata.	Padilla-Garcia N, Le Veve A, Cermak V, Iltas O, Contreras-Garrido A, Legrand S, Aury JM, Horvath R, Horvath R, Lafon Placette C.	Mol Biol Evol	10.1093/molbev/msaf093	2025
	Can "In-Out-In" posterosuperior screws meet nutrient foramina in patients with femoral neck fractures?	Wu S, Zhao S, Aisikaer A, Zhu X, Miao Y, Li G, Zhang Y, Mei J.	J Orthop Surg Res	10.1186/s13018-023-03936-w	2023
	Impact of plant growth-promoting rhizobacteria on root colonization potential and life cycle of Rhizophagus irregularis following co-entrapment into alginate beads.	Lojan P, Demortier M, Velivelli SL, Pfeiffer S, Suarez JP, de Vos P, Prestwich BD, Sessitsch A, Declerck S.	J Appl Microbiol	10.1111/jam.13355	2017
Metabolism	Selective Photoreceptor Gene Knock-out Reveals a Regulatory Role for the Growth Behavior of Pseudomonas syringae.	Shah R, Pathak G, Drepper T, Gartner W.	Photochem Photobiol	10.1111/php.12610	2016
	Microbiological analysis of skin lesions of cod (Gadus morhua) from the southern part of the Baltic Sea.	Pekala-Safinska A, Nadolna-Altyn K, Rozycki M, Pazdzior E, Cencek T, Podolska M.	J Vet Res	10.2478/jvetres-2024-0004	2024
	Effects of different concentrations of Lactiplantibacillus plantarum and Bacillus licheniformis on silage fermentation parameter, chemical composition and microbial community of Pennisetum sinese.	Chen Q, Yu B, Zhu Y, Xiong H, Guo Y, Liu D, Sun B.	Front Microbiol	10.3389/fmicb.2025.1532060	2025
	Pattern-triggered immunity in blue and white seed cultivars of Papaver somniferum.	Hernandez Orozco JS, Iakovenko O, Zeiner A, Hronkova M, Kubasek J, Kucerova B, Vachova I, Pop S, Hradecka N, Marsik P, Macho M, Fojtikova P, Rychla A, Hejna O, Kulich I, Wrzaczek M, Janda M.	AoB Plants	10.1093/aobpla/plaf055	2025
	Antibacterial Activity of Imidazolium-Based Ionic Liquids Investigated by QSAR Modeling and Experimental Studies.	Hodyna D, Kovalishyn V, Rogalsky S, Blagodatnyi V, Petko K, Metelytsia L.	Chem Biol Drug Des	10.1111/cbdd.12770	2016
Metabolism	Identification, eukaryotic expression and structure & function characterizations of beta-defensin like homologues from Pelodiscus sinensis.	Yu H, Wang H, Liu X, Feng L, Qiao X, Cai S, Shi N, Wang Y.	Dev Comp Immunol	10.1016/j.dci.2016.11.020	2017
	Piper sarmentosum Roxb. Inhibits Angiotensin-Converting Enzyme Activity in Phorbol 12-Myristate-13-Acetate-Induced Endothelial Cells.	Ugusman A, Ismail SM, Nor Hisam NS, Hui CK, Saleh MSM, Abdul Karim AK, Othman NS, Hamid AA, Aminuddin A.	Int J Mol Sci	10.3390/ijms25052806	2024
	Lipid breakdown and sensory analysis of milk inoculated with Chryseobacterium joostei or Pseudomonas fluorescens	Bekker A, Jooste P, Steyn L, Bothma C, Hugo A, Hugo C.	Int Dairy J	10.1016/j.idairyj.2015.09.003	2016
	Optimized Continuous Thermosonication for Sustainable Pasteurization of Orange and Dried Black Lime Juices: Techno-Functional, Physicochemical, and Microbial Assessment.	Abdulstar AR, Al-HiIphy AR, Altemimi AB, Tlay RH, Abedelmaksoud TG.	Food Sci Nutr	10.1002/fsn3.71171	2025
	Naphtho-Gamma-Pyrones (NgammaPs) with Obvious Cholesterol Absorption Inhibitory Activity from the Marine-Derived Fungus Aspergillus niger S-48.	Wu CZ, Peng XP, Li G, Wang Q, Lou HX.	Molecules	10.3390/molecules27082514	2022
	Comprehensive Structure of the Female Marine Water-Strider Asclepios annandalei Distant, 1915 from Pranburi River Estuary, Thailand: New Information for the Genus Asclepios.	Poolprasert P, Senarat S, Kettratad J, Kaneko G, Mongkolchaichana E, Charoenphon N, Thaochan N.	Trop Life Sci Res	10.21315/tlsr2022.33.3.4	2022
	Synthesis and Degradation of the Phytohormone Indole-3-Acetic Acid by the Versatile Bacterium Paraburkholderia xenovorans LB400 and Its Growth Promotion of Nicotiana tabacum Plant.	Vega-Celedon P, Castillo-Novales D, Bravo G, Cardenas F, Romero-Silva MJ, Seeger M.	Plants (Basel)	10.3390/plants13243533	2024
	Dual Chemotherapeutic Loading in Oxalate Transferrin-Conjugated Polymersomes Incorporated into Chitosan Hydrogels for Site-Specific Targeting of Melanoma Cells.	Aranha MC, Alencar LMR, Souto EB, Kamei DT, Lopes AM.	Pharmaceuticals (Basel)	10.3390/ph17091177	2024
	Molecular phylogeny of Psychodopygina (Diptera, Psychodidae) supporting morphological systematics of this group of vectors of New World tegumentary leishmaniasis.	Zapata S, Galati EAB, Chaves JA, Artigas P, Gantier JC, Bargues MD, Mas-Coma S, Depaquit J.	Parasite	10.1051/parasite/2023018	2023
Phylogeny	Heavy Metal Resistance Ability of Pseudomonas Species Isolated from Sludge and Sewage in Iraq.	Fawwaz Alfarras A, Hamid Al-Fahdawi M, Albayaty MK.	Arch Razi Inst	10.22092/ari.2022.357399.2036	2022
Pathogenicity	Role of Trachemys scripta elegans in polystome (Platyhelminthes, Monogenea, Polystomatidae) spillover and spillback following the trade of freshwater turtles in southern Europe and North America.	Verneau O, Quinn D, Smith KG, Malone JH, du Preez L.	Parasite	10.1051/parasite/2025022	2025
Metabolism	De-regulation of diabetic regulatory genes in psoriasis: Deciphering the unsolved riddle.	AlFadhli S, Al-Zufairi AAM, Nizam R, AlSaffar HA, Al-Mutairi N.	Gene	10.1016/j.gene.2016.08.024	2016
	Two-dimensional correlation infrared spectroscopy applied to the identification of ephedrine and pseudoephedrine in illegally adulterated slimming herbal products.	Miao L, Liu Y, Li H, Qi Y, Lu F.	Drug Test Anal	10.1002/dta.1963	2017
	[Optimized expression and functional analysis of enhancin gene from Pseudaletia unipuncta granulovirus (PuGV-Ps)].	Han G, Liu Q, Xu B, Wang J, Qi J, Li C, Xu J.	Wei Sheng Wu Xue Bao		2016
Pathogenicity	The effect of alginate lyase on the gentamicin resistance of Pseudomonas aeruginosa in mucoid biofilms.	Germoni LA, Bremer PJ, Lamont IL.	J Appl Microbiol	10.1111/jam.13153	2016
	Novel class IIb microcins show activity against Gram-negative ESKAPE and plant pathogens.	Mortzfeld BM, Bhattarai SK, Bucci V.	Elife	10.7554/elife.102912	2024
	Biological evaluation of tetracationic compounds based on two 1,4-diazabicyclo[2.2.2]octane moieties connected by different linkers.	Burakova EA, Saranina IV, Tikunova NV, Nazarkina ZK, Laktionov PP, Karpinskaya LA, Anikin VB, Zarubaev VV, Silnikov VN.	Bioorg Med Chem	10.1016/j.bmc.2016.09.064	2016
	Lysozyme Peptides as a Novel Nutra-Preservative to Control Some Food Poisoning and Food Spoilage Microorganisms.	Abdou AM, Awad DAB.	Probiotics Antimicrob Proteins	10.1007/s12602-024-10226-2	2025
Phylogeny	Four novel taxa of cyanobacteria from a unique thermal cave habitat in Vromoner Canyon, Albania.	Pokorny J, Vondraskova A, Wipplingerova M, Kastovsky J.	J Phycol	10.1111/jpy.70082	2025
	Co-culture of Methanobrevibacter smithii with enterobacteria during urinary infection.	Grine G, Lotte R, Chirio D, Chevalier A, Raoult D, Drancourt M, Ruimy R.	EBioMedicine	10.1016/j.ebiom.2019.04.037	2019
Pathogenicity	Quercetin is an effective inhibitor of quorum sensing, biofilm formation and virulence factors in Pseudomonas aeruginosa.	Ouyang J, Sun F, Feng W, Sun Y, Qiu X, Xiong L, Liu Y, Chen Y.	J Appl Microbiol	10.1111/jam.13073	2016
Enzymology	Effect of aerosolized antipseudomonals on Pseudomonas positivity and bronchiolitis obliterans syndrome after lung transplantation.	Moore CA, Pilewski JM, Venkataramanan R, Robinson KM, Morrell MR, Wisniewski SR, Zeevi A, McDyer JF, Ensor CR.	Transpl Infect Dis	10.1111/tid.12688	2017
Pathogenicity	Investigating the Antidepressant Mechanisms of Polygonum sibiricum Polysaccharides via Microglial Polarization.	Zhang Y, Wang D, Liu J, Sun J, Liu X, Fan B, Lu C, Wang F.	Nutrients	10.3390/nu16030438	2024
	Potential of newly isolated strain Pseudomonas aeruginosa MC-1/23 for the bioremediation of soil contaminated with selected non-steroidal anti-inflammatory drugs.	Klim M, Zmijowska A, Cycon M.	Front Microbiol	10.3389/fmicb.2025.1542875	2025
	Polyhydroxyalkanoate Production from Eucalyptus Bark's Enzymatic Hydrolysate.	Rodrigues T, Torres CAV, Marques S, Girio F, Freitas F, Reis MAM.	Materials (Basel)	10.3390/ma17081773	2024
	Evidence for the gut-skin axis: Common genetic structures in inflammatory bowel disease and psoriasis.	Guo J, Luo Q, Li C, Liang H, Cao Q, Li Z, Chen G, Yu X.	Skin Res Technol	10.1111/srt.13611	2024
	Identification and Expression Patterns of WOX Transcription Factors under Abiotic Stresses in Pinus massoniana.	Wang D, Qiu Z, Xu T, Yao S, Zhang M, Cheng X, Zhao Y, Ji K.	Int J Mol Sci	10.3390/ijms25031627	2024
Metabolism	Community characteristics of the gut microbiomes of competitive cyclists.	Petersen LM, Bautista EJ, Nguyen H, Hanson BM, Chen L, Lek SH, Sodergren E, Weinstock GM.	Microbiome	10.1186/s40168-017-0320-4	2017
Enzymology	Angiopep2-functionalized polymersomes for targeted doxorubicin delivery to glioblastoma cells.	Figueiredo P, Balasubramanian V, Shahbazi MA, Correia A, Wu D, Palivan CG, Hirvonen JT, Santos HA.	Int J Pharm	10.1016/j.ijpharm.2016.07.066	2016
	A concise enzyme cascade enables the manufacture of natural and halogenated protoberberine alkaloids.	Li F, Yuan Z, Gao Y, Deng Z, Zhang Y, Luo Z, Rao Y.	Nat Commun	10.1038/s41467-025-57280-0	2025
	Lipid-lowering and antioxidant effects of Polygonatum fermented liquor: a study on intestinal microbiota and brain-gut axis in mice.	Yang X, Fang L, Shen J, Tan Z, Zeng W, Peng M, Xiao N.	Front Nutr	10.3389/fnut.2024.1428228	2024
Pathogenicity	Pseudomonas aeruginosa biofilm disruption using microbial surfactants.	Diaz De Rienzo MA, Stevenson PS, Marchant R, Banat IM.	J Appl Microbiol	10.1111/jam.13049	2016
	The assessment of pore connectivity in hierarchical zeolites using positron annihilation lifetime spectroscopy: instrumental and morphological aspects.	Zubiaga A, Warringham R, Boltz M, Cooke D, Crivelli P, Gidley D, Perez-Ramirez J, Mitchell S.	Phys Chem Chem Phys	10.1039/c6cp00408c	2016
Phylogeny	Genome-Wide Analysis of the Gibberellin-Oxidases Family Members in Four Prunus Species and a Functional Analysis of PmGA2ox8 in Plant Height.	Li X, Zhang J, Guo X, Qiu L, Chen K, Wang J, Cheng T, Zhang Q, Zheng T.	Int J Mol Sci	10.3390/ijms25168697	2024
	Substrate scope expansion of 4-phenol oxidases by rational enzyme selection and sequence-function relations.	Eggerichs D, Weindorf N, Weddeling HG, Van der Linden IM, Tischler D.	Commun Chem	10.1038/s42004-024-01207-1	2024
Phylogeny	A set of PCRs for rapid identification and characterization of Pseudomonas syringae phylogroups.	Borschinger B, Bartoli C, Chandeysson C, Guilbaud C, Parisi L, Bourgeay JF, Buisson E, Morris CE.	J Appl Microbiol	10.1111/jam.13017	2016
	Molecular versus conventional culture for detection of respiratory bacterial pathogens in poultry.	Ammar AM, Abd El-Aziz NK, Abd El Wanis S, Bakry NR.	Cell Mol Biol (Noisy-le-grand)		2016
Phylogeny	Psathyloma, a new genus in Hymenogastraceae described from New Zealand.	Soop K, Dima B, Szarkandi JG, Cooper J, Papp T, Vagvolgyi C, Nagy LG.	Mycologia	10.3852/15-143	2016
Metabolism	Exploiting Bacterial Operons To Illuminate Human Iron-Sulfur Proteins.	Andreini C, Banci L, Rosato A.	J Proteome Res	10.1021/acs.jproteome.6b00045	2016
Metabolism	Effect of pH, Norepinephrine and Glucose on Metabolic and Biofilm Activity of Uropathogenic Microorganisms.	Ignatova N, Abidullina A, Streltsova O, Elagin V, Kamensky V.	Microorganisms	10.3390/microorganisms11040862	2023
Metabolism	Polygonatum stenophyllum improves menopausal obesity via regulation of lipolysis-related enzymes.	Lee JE, Kim EJ, Kim MH, Hong J, Yang WM.	J Nat Med	10.1007/s11418-016-1018-9	2016
	How do soil organic carbon stocks change after cropland abandonment in Mediterranean humid mountain areas?	Nadal-Romero E, Cammeraat E, Perez-Cardiel E, Lasanta T.	Sci Total Environ	10.1016/j.scitotenv.2016.05.031	2016
Phylogeny	Xerotolerant fungi in house dust: taxonomy of Spiromastix, Pseudospiromastix and Sigleria gen. nov. in Spiromastigaceae (Onygenales, Eurotiomycetes).	Hirooka Y, Tanney JB, Nguyen HD, Seifert KA.	Mycologia	10.3852/15-065	2016
	Designed Reactive Natural Deep Eutectic Solvents for Lipase-Catalyzed Esterification.	Buzatu AR, Todea A, Pop R, Dreava DM, Paul C, Bitcan I, Motoc M, Peter F, Boeriu CG.	Molecules	10.3390/molecules30040778	2025
	Uncovering the antifungal activities of wild apple-associated bacteria against two canker-causing fungi, Cytospora mali and C. parasitica.	Bozorov TA, Toshmatov ZO, Kahar G, Muhammad SM, Liu X, Zhang D, Aytenov IS, Turakulov KS.	Sci Rep	10.1038/s41598-024-56969-4	2024
	Morphological and Multi-Gene Phylogenetic Analyses Reveal Pseudotubeufia gen. nov. and Two New Species in Tubeufiaceae from China.	Ma J, Xiao XJ, Liu NG, Boonmee S, Xiao YP, Lu YZ.	J Fungi (Basel)	10.3390/jof9070742	2023
	Photoactive metabolite mediated photodynamic therapy of Rhabdomyosarcoma cell lines using medicinal plants and Doxorubicin co-treatments.	Javaid S, Qureshi IZ, Khurshid A, Afsar T, Husain FM, Khurshid M, Trembley JH, Razak S.	BMC Complement Med Ther	10.1186/s12906-024-04575-2	2024
	Entomological Survey and Leishmania (Leishmania) mexicana Prevalence in Sand Fly Species during an Outbreak of Cutaneous Leishmaniasis in Quintana Roo State, Mexico.	Caneda-Guzman IC, Oca-Aguilar ACM, Miranda-Caballero CI, Grostieta E, Correa-Morales F, Romero-Perez R, Romero-Contreras FE, Rodriguez-Atanacio JA, Ruiz-Tovar K, Huerta H, Mis-Avila PC, Quintanilla-Cedillo MR, Lammoglia-Villagomez MA, Blum-Dominguez S, Tamay-Segovia P, Rojas-Ronquillo R, Sanchez-Montes S, Becker I.	Trop Med Infect Dis	10.3390/tropicalmed8100465	2023
	Isolation of a Novel Pythium Species, P. thermoculicivorax, and Trichoderma sp. from Natural Enzootic Mosquito Larval Infections.	Joseph R, Darrisaw C, Lloyd A, Hoel D, Keyhani NO.	J Fungi (Basel)	10.3390/jof10030199	2024
	Clinical isolates of Providencia rettgeri and Providencia Stuartii evades neutrophil-mediated killing by subverting neutrophil-extracellular traps.	Castro JE, Birnberg-Weiss F, Toloza MJ, Bertinat YA, Fuentes F, Peyloubet A, Faccone D, Gomez SA, Landoni VI, Fernandez GC.	Front Immunol	10.3389/fimmu.2025.1636387	2025
Enzymology	Applying a PCR-based open-reading frame typing method for easy genotyping and molecular epidemiological analysis of Pseudomonas aeruginosa.	Suzuki M, Yamada K, Aoki M, Hosoba E, Matsumoto M, Baba H, Iinuma Y.	J Appl Microbiol	10.1111/jam.13016	2016
	Active-Site Oxygen Accessibility and Catalytic Loop Dynamics of Plant Aromatic Amino Acid Decarboxylases from Molecular Simulations.	Gou Y, Li T, Wang Y.	Biochemistry	10.1021/acs.biochem.4c00144	2024
	Defining Genetic, Taxonomic, and Geographic Boundaries among Species of the Psorophora confinnis (Diptera: Culicidae) Complex in North and South America	Lanzaro GC, Collier TC, Lee Y.	Ann Entomol Soc Am		2015
Metabolism	Piper sarmentosum Roxb. produces antidepressant-like effects in rodents, associated with activation of the CREB-BDNF-ERK signaling pathway and reversal of HPA axis hyperactivity.	Li Q, Qu FL, Gao Y, Jiang YP, Rahman K, Lee KH, Han T, Qin LP.	J Ethnopharmacol	10.1016/j.jep.2017.01.037	2017
	Antimicrobial efficacy of the combinations of Acacia nilotica,Murrayakoenigii (Linn.) Sprengel, Eucalyptus, and Psidiumguajava on primary plaque colonizers: An in vitro study.	Chandra Shekar BR, Nagarajappa R, Singh R, Suma S, Thakur R.	Indian J Dent Res	10.4103/0970-9290.191892	2016
	Construction of lignan glycosides biosynthetic network in Escherichia coli using mutltienzyme modules.	Qiao Y, Huang D, Li Y, Jiang S, Chen X, Chen J, Xiao Y, Chen W.	Microb Cell Fact	10.1186/s12934-024-02467-1	2024
	Lectotypification, epitypification, and molecular phylogeny of the synnematous hyphomycete Pseudogliophragma indicum, the second genus in the Wiesneriomycetaceae	Pratibha J, Nguyen HDT, Mel'nik VA, Bhat DJ, White GP, Seifert KA.	Mycoscience	10.1016/j.myc.2014.12.002	2015
	Population Characteristics of the Spectrum and Frequencies of CFTR Gene Mutations in Patients with Cystic Fibrosis from the Republic of Bashkortostan (Russia).	Ayupova G, Litvinov S, Akhmetova V, Minniakhmetov I, Mokrysheva N, Khusainova R.	Genes (Basel)	10.3390/genes15101335	2024
Pathogenicity	Fish oils against Burkholderia and Pseudomonas aeruginosa: in vitro efficacy and their therapeutic and prophylactic effects on infected Galleria mellonella larvae.	Mil-Homens D, Ferreira-Dias S, Fialho AM.	J Appl Microbiol	10.1111/jam.13145	2016
Genetics	Characterization and comparative analysis of the genome of Puccinia sorghi Schwein, the causal agent of maize common rust.	Rochi L, Dieguez MJ, Burguener G, Darino MA, Pergolesi MF, Ingala LR, Cuyeu AR, Turjanski A, Kreff ED, Sacco F.	Fungal Genet Biol	10.1016/j.fgb.2016.10.001	2018
	Molecular Insight into Ligand Binding and Transport by the Lentil Lipid Transfer Protein Lc-LTP2: The Role of Basic Amino Acid Residues at Opposite Entrances to the Hydrophobic Cavity.	Melnikova DN, Bogdanov IV, Potapov AE, Alekseeva AS, Finkina EI, Ovchinnikova TV.	Biomolecules	10.3390/biom13121699	2023
	DNA barcoding of sand flies (Diptera, Psychodidae, Phlebotominae) from the western Brazilian Amazon.	Pinto IS, Rodrigues BL, de Araujo-Pereira T, Shimabukuro PHF, de Pita-Pereira D, Britto C, Brazil RP.	PLoS One	10.1371/journal.pone.0281289	2023
	Convolutional neural network-based reconstruction for positronium annihilation localization.	Jegal J, Jeong D, Seo ES, Park H, Kim H.	Sci Rep	10.1038/s41598-022-11972-5	2022
Enzymology	Identification of a robust bacterial pyranose oxidase that displays an unusual pH dependence.	Santema LL, Rozeboom HJ, Borger VP, Kaya SG, Fraaije MW.	J Biol Chem	10.1016/j.jbc.2024.107885	2024
	Complex Extract of Polygonatum sibiricum and Nelumbinis semen Improves Menopause Symptoms via Regulation of Estrogen Receptor Beta in an Ovariectomized Rat Model.	Park D, Yoon JE, Choi B, Lee YJ, Ha IH.	Nutrients	10.3390/nu15112443	2023
	Computational studies reveal structural characterization and novel families of Puccinia striiformis f. sp. tritici effectors.	Asghar R, Wu N, Ali N, Wang Y, Akkaya M.	PLoS Comput Biol	10.1371/journal.pcbi.1012503	2025
	Coexistence of nonfluorescent chromoproteins and fluorescent proteins in massive Porites spp. corals manifesting a pink pigmentation response.	Suzuki T, Casareto BE, Yucharoen M, Dohra H, Suzuki Y.	Front Physiol	10.3389/fphys.2024.1339907	2024
	A novel graphene-based label-free fluorescence 'turn-on' nanosensor for selective and sensitive detection of phosphorylated species in biological samples and living cells.	Ke Y, Garg B, Ling YC.	Nanoscale	10.1039/c5nr07261a	2016
	EEG oscillations and related brain generators of phonation phases in long utterances	Hashemi S, Cheron G, Demolin D, Cebolla A.	Sci Rep		2025
Metabolism	Dysregulation of the ADAM17/Notch signalling pathways in endometriosis: from oxidative stress to fibrosis.	Gonzalez-Foruria I, Santulli P, Chouzenoux S, Carmona F, Chapron C, Batteux F.	Mol Hum Reprod	10.1093/molehr/gax028	2017
	The transmission of visceral leishmaniasis in the municipality of Guarujá, on the Coast of São Paulo state, Brazil.	Casanova C, Motoie G, Domingos MF, Silva VGD, Silva MDD, Galati EAB, Galvis-Ovallos F.	Rev Saude Publica	10.11606/s1518-8787.2022056003680	2022
	Anti-PS IgG Immune Complexes Impair Macrophage Phagocytosis in SLE via LOX-Dependent Oxidative Stress	Guan H, Huang L, Liu Y, Zhu E, Chen L, Li W, Wu H, Zhang X, Qin R, Zheng J, Mo Y, Zhong M, Xu B, Dai X, Wei Q, Chen Y, Wang Q, Zheng Z, Ma K, Tang C.	J Inflamm Res		2025
	Impact of addition of polyvinyl chloride on the properties of clayey soil using experimental approach and optimization for geotechnical engineering applications	Boukhatem G, Berdoudi S, Bencheikh M, Benzerara M, Kirgiz M, Nagaprasad N, Ramaswamy K.	Sci Rep		2025
	Integrating microwave-assisted green synthesis, DFT simulations, and biological activity evaluation of copper-doped zinc oxide nanoparticles	M A, D U, B.M A, Dennison M.	Sci Rep		2025
	Selective Optical Imaging for Detection of Bacterial Biofilms in Tissues.	Okebiorun M, Oberbeck C, Waite C, Clark S, Miller D, Barney Smith EH, Cornell KA, Browning J.	J Imaging	10.3390/jimaging9080160	2023
	Prurigo strophulus: Epidemiological, clinical aspects and environmental factors among children in Yaoundé, Cameroon (Sub-Saharan Africa).	Kouotou EA, Nguena Feungue U, Engolo Fandio A, Tounouga DN, Ndjitoyap Ndam EC.	Skin Health Dis	10.1002/ski2.38	2021
	A barcode database for insects associated with the spread of the Cocoa Swollen Shoot Virus Disease in Côte d'Ivoire.	Koffi ADK, Babin R, Delvare G, Cherasse S, Ouvrard D, Shimbori EM, Koigny KJH, Kpangui SK, Benoit L, Galan M, Yode CDV, Ouali N'goran MS, Haran JM.	Biodivers Data J	10.3897/bdj.13.e144017	2025
	Monoenergetic positronium emission from metal-organic framework crystals.	Jones AC, Goldman HJ, Zhai Q, Feng P, Tom HW, Mills AP.	Phys Rev Lett	10.1103/physrevlett.114.153201	2015
	Polyhydroxyalkanoates (PHAs) from Endophytic Bacterial Strains as Potential Biocontrol Agents against Postharvest Diseases of Apples.	Ignatova L, Brazhnikova Y, Omirbekova A, Usmanova A.	Polymers (Basel)	10.3390/polym15092184	2023
	Plant Growth-Promoting Endophytic Bacteria Isolated from Miscanthus giganteus and Their Antifungal Activity	Lovecka P, Kroneislova G, Novotna Z, Roderova J, Demnerova K.	Microorganisms		2023
	Antimicrobial Activity of Syzygium aromaticum and Zanthoxylum xanthoxyloides Essential Oils Against Phytophthora megakarya	Nana WL, Eke P, Fokom R, Bakanrga-Via I, Begoude D, Tchana T, Tchameni NS, Kuate J, Menut C, Fekam Boyom F.	Journal of phytopathology.	10.1111/jph.12363	2015
Enzymology	Cloning and characterization of a novel mesophilic xylanase gene Fgxyn3 from Fusarium graminearum Z-1.	Zhang D, Zhu Z, Su X, Gao T, Li N, Huang W, Wu M.	3 Biotech	10.1007/s13205-024-03973-0	2024
	Genome-Wide Identification and Analysis of the Aux/IAA Gene Family in Panax ginseng: Evidence for the Role of PgIAA02 in Lateral Root Development.	Wang Y, Wang Q, Di P, Wang Y.	Int J Mol Sci	10.3390/ijms25063470	2024
	On the taxonomic affinity of Albiziacarbonaria Britton (Leguminosae, Caesalpinioideae-mimosoid clade).	Koenen EJM.	PhytoKeys	10.3897/phytokeys.205.82288	2022
	Phosphate Source Interacts with Endophyte Strain to Influence Biomass and Root System Architecture in Tall Fescue	Chan MW, Kupper JV, McNear DH.	Agron J	10.2134/agronj14.0135	2015
Metabolism	Biliverdin reductase B as a new target in breast cancer.	Marchenko N, Nesbitt NM, Alexandrova E, Reisz JA, D'Alessandro A, Suh J, Uryasev S, Pennacchia L, Bahou WF.	Breast Cancer Res	10.1186/s13058-025-02147-x	2025
	Novel polymycoviruses are encapsidated in filamentous virions.	Han Z, Jiang J, Xu W.	J Virol	10.1128/jvi.01515-24	2025
	Lactobacillus acidophilus (strain Scav) postbiotic metabolites reduce infection and modulate inflammation in an in vivo model of Pseudomonas aeruginosa wound infection.	Wilson RM, Walker JM, Beld J, Yin K.	J Appl Microbiol	10.1093/jambio/lxaf061	2025
	TML1 and TML2 synergistically regulate nodulation and affect arbuscular mycorrhiza in Medicago truncatula.	Chaulagain D, Schnabel E, Kappes M, Lin EX, Muller LM, Frugoli JA.	Front Plant Sci	10.3389/fpls.2024.1504404	2024
	Molecular detection of Wolbachia and Bartonella as part of the microbiome of phlebotomine sand flies from Chiapas, Mexico.	Lozano-Sardaneta YN, Marina CF, Torres-Monzon JA, Sanchez-Cordero V, Becker I.	Parasitol Res	10.1007/s00436-023-07829-z	2023
	Characterization of a novel aspartic protease from Trichoderma asperellum for the preparation of duck blood peptides.	Xue Y, Yan Q, Li X, Jiang Z.	Appl Microbiol Biotechnol	10.1007/s00253-023-12848-y	2024
Phylogeny	Arbuscular Mycorrhizal Fungi Associated with Maize (Zea mays L.) in the Formation and Stability of Aggregates in Two Types of Soil	Gomez-Leyva J, Segura-Castruita M, Hernandez-Cuevas L, Iniguez-Rivas M.	Microorganisms		2023
Transcriptome	Bacterial Tolerance to 1-Butanol and 2-Butanol: Quantitative Assessment and Transcriptomic Response.	Arsov A, Petrova P, Gerginova M, Tsigoriyna L, Armenova N, Ignatova I, Petrov K.	Int J Mol Sci	10.3390/ijms252413336	2024
Genetics	Defining Genetic, Taxonomic, and Geographic Boundaries Among Species of the Psorophora confinnis (Diptera: Culicidae) Complex in North and South America.	Lanzaro GC, Collier TC, Lee Y.	J Med Entomol	10.1093/jme/tjv084	2015
	Synthesis, biological evaluation, and molecular docking of novel ferulic acid derivatives containing a 1,3,4-oxadiazole thioether and trifluoromethyl pyrimidine skeleton.	An J, Pan N, Liu C, Chen H, Fei Q, Gan X, Wu W.	RSC Adv	10.1039/d4ra01765j	2024
	Inactivation of dried cells and biofilms of Listeria monocytogenes by exposure to blue light at different wavelengths and the influence of surface materials.	Olszewska MA, Dev Kumar G, Hur M, Diez-Gonzalez F.	Appl Environ Microbiol	10.1128/aem.01147-23	2023
	Age- and Sex-Associated Pathogenesis of Cell Culture-Passaged Kemerovo Virus in IFNAR^(-/-) Mice.	Migne CV, Heckmann A, Monsion B, Mohd Jaafar F, Galon C, Rakotobe S, Bell-Sakyi L, Moutailler S, Attoui H.	Int J Mol Sci	10.3390/ijms25063177	2024
	Role of Microbial Interactions across Food-Related Bacteria on Biofilm Population and Biofilm Decontamination by a TiO₂-Nanoparticle-Based Surfactant.	Doulgeraki AI, Kamarinou CS, Nychas GE, Argyri AA, Tassou CC, Moulas G, Chorianopoulos N.	Pathogens	10.3390/pathogens12040573	2023
	Ecological Aspects of the Phlebotominae Fauna (Diptera: Psychodidae) among Forest Fragments and Built Areas in an Endemic Area of American Visceral Leishmaniasis in João Pessoa, Paraíba, Brazil.	Silva BQD, Afonso MMDS, Freire LJM, Santana ALF, Pereira-Colavite A, Rangel EF.	Insects	10.3390/insects13121156	2022
Enzymology	Chemical composition and aroma evaluation of volatile oils from edible mushrooms (Pleurotus salmoneostramineus and Pleurotus sajor-caju).	Usami A, Nakaya S, Nakahashi H, Miyazawa M.	J Oleo Sci	10.5650/jos.ess14147	2014
	A double-edged sword in antiviral defence: ATG7 binding dicer to promote virus replication.	Wu Y, Wu Y, Wang C, Xiong N, Ji W, Fu M, Zhu J, Li Z, Lin J, Yang Q.	Cell Mol Life Sci	10.1007/s00018-025-05603-1	2025
Enzymology	Functional activity of E. coli RNase R in the Antarctic Pseudomonas syringae Lz4W.	Hussain A, Ray MK.	J Genet Eng Biotechnol	10.1186/s43141-023-00553-2	2023
	Nyamanini Virus Nucleoprotein and Phosphoprotein Organize Viral Inclusion Bodies That Associate with Host Biomolecular Condensates in the Nucleus.	Hirai Y, Horie M.	Int J Mol Sci	10.3390/ijms24076550	2023
	Exploring the expression of Pseudomonas aeruginosa genes directly from sputa of cystic fibrosis patients.	Barthe C, Nandakumar S, Derlich L, Macey J, Bui S, Fayon M, Crouzet M, Garbay B, Vilain S, Costaglioli P.	Lett Appl Microbiol	10.1111/lam.12465	2015
	Study on the removal of Cd from dewatered sludge by combined extraction agents: Peel extract and compound chemical extraction agent.	Li H, Jiao S, Tian L, Wang Y, Li F.	Food Chem X	10.1016/j.fochx.2024.101760	2024
	Implications of Domestication in Theobroma cacao L. Seed-Borne Microbial Endophytes Diversity.	Toloza-Moreno DL, Yockteng R, Perez-Zuniga JI, Salinas-Castillo C, Caro-Quintero A.	Microb Ecol	10.1007/s00248-024-02409-9	2024
Metabolism	Vasa expression in spermatogenic cells during the reproductive-cycle phases of Podarcis sicula (Reptilia, Lacertidae).	Milani L, Maurizii MG.	J Exp Zool B Mol Dev Evol	10.1002/jez.b.22628	2015
	Exploring the Properties and Application Potential of beta-Glucan in Skin Care.	Feng X, Shang J, Wang Y, Chen Y, Liu Y.	Food Sci Nutr	10.1002/fsn3.70212	2025
Genetics	Comparative Characterization of Pseudoroegneria libanotica and Pseudoroegneria tauri Based on Their Repeatome Peculiarities.	Kroupin PY, Yurkina AI, Ulyanov DS, Karlov GI, Divashuk MG.	Plants (Basel)	10.3390/plants12244169	2023
	Neural computations in prosopagnosia.	Faghel-Soubeyrand S, Richoz AR, Waeber D, Woodhams J, Caldara R, Gosselin F, Charest I.	Cereb Cortex	10.1093/cercor/bhae211	2024
	Polystyrene-colonizing bacteria are enriched for long-chain alkane degradation pathways.	Hsueh SW, Jian YH, Fugmann SD, Yang SY.	PLoS One	10.1371/journal.pone.0292137	2023
	Microbial investigation of cleanability of different plastic and metal surfaces used by the food industry.	Waldhans C, Hebel M, Herbert U, Spoelstra P, Barbut S, Kreyenschmidt J.	J Food Sci Technol	10.1007/s13197-023-05778-0	2023
	Seasonal adaptation of dwarf hamsters (Genus Phodopus): differences between species and their geographic origin.	Muller D, Hauer J, Schottner K, Fritzsche P, Weinert D.	J Comp Physiol B	10.1007/s00360-015-0926-4	2015
	Characterizing viral species in mosquitoes (Culicidae) in the Colombian Orinoco: insights from a preliminary metagenomic study.	Gomez M, Martinez D, Paez-Triana L, Luna N, De Las Salas JL, Hernandez C, Florez AZ, Munoz M, Ramirez JD.	Sci Rep	10.1038/s41598-023-49232-9	2023
	Cadmium exposure affects iron acquisition in barley (Hordeum vulgare) seedlings	Astolfi S, Ortolani MR, Catarcione G, Paolacci AR, Cesco S, Pinton R, Ciaffi M.	Physiologia Plantarum.		2014
	Base- or acid-assisted polystyrene plastic degradation in supercritical CO₂.	Liu Y, Shi J, Mao L, Lu B, Kang X, Jin H.	Waste Dispos Sustain Energy	10.1007/s42768-023-00139-1	2023
	Enhanced photocatalytic hydrogen production from an MCM-41-immobilized photosensitizer-[Fe-Fe] hydrogenase mimic dyad.	Wang W, Yu T, Zeng Y, Chen J, Yang G, Li Y.	Photochem Photobiol Sci	10.1039/c3pp50446h	2014
Biotechnology	Evaluation of Interactions of Added Soybean Peroxidase with Other Nutrients Present in Fish Feeds Using an In Vitro Digestive Simulation.	Nogueira WV, Aznar-Garcia MJ, Martinez-Antequera FP, de Las Heras AMB, Tesser MB, Garda-Buffon J, Moyano FJ.	Animals (Basel)	10.3390/ani13193046	2023
	Formulation and in vitro characterization of poly(dl-lactide-co-glycolide)/Eudragit RLPO or RS30D nanoparticles as an oral carrier of levofloxacin hemihydrate.	Hasan AA, Sabry SA, Abdallah MH, El-Damasy DA.	Pharm Dev Technol	10.3109/10837450.2015.1041044	2016
	Potential for Psorophora columbiae and Psorophora ciliata Mosquitoes (Diptera: Culicidae) to Transmit Rift Valley Fever Virus.	Turell MJ, Britch SC, Aldridge RL, Xue RD, Smith ML, Cohnstaedt LW, Linthicum KJ.	J Med Entomol	10.1093/jme/tjv093	2015
	A Review of Biological and Sustainable Management Approaches for Alphitobius diaperinus, a Major Pest in Poultry Facilities.	Tufan-Cetin O, Cetin H.	Vet Sci	10.3390/vetsci12020158	2025
Metabolism	Phosphorus and nitrogen physiology of two contrasting poplar genotypes when exposed to phosphorus and/or nitrogen starvation.	Gan H, Jiao Y, Jia J, Wang X, Li H, Shi W, Peng C, Polle A, Luo ZB.	Tree Physiol	10.1093/treephys/tpv093	2016
Metabolism	Ellagic acid derivatives from Terminalia chebula Retz. increase the susceptibility of Pseudomonas aeruginosa to stress by inhibiting polyphosphate kinase.	Sarabhai S, Harjai K, Sharma P, Capalash N.	J Appl Microbiol	10.1111/jam.12733	2015
	Helminth Parasites of Invasive Freshwater Fish in Lithuania.	Kudlai O, Rakauskas V, Baker NJ, Pantoja C, Lisitsyna O, Binkiene R.	Animals (Basel)	10.3390/ani14223293	2024
Metabolism	Methanogen prevalence throughout the gastrointestinal tract of pre-weaned dairy calves.	Zhou M, Chen Y, Griebel PJ, Guan le L.	Gut Microbes	10.4161/19490976.2014.969649	2014
	Tolerogenic Lipid Nanoparticles for Delivering Self-Antigen mRNA for the Treatment of Experimental Autoimmune Encephalomyelitis.	Gomi M, Nakayama Y, Sakurai Y, Oyama R, Iwasaki K, Doi M, Liu Y, Hori M, Watanabe H, Hashimoto K, Tanaka H, Tange K, Nakai Y, Akita H.	Pharmaceuticals (Basel)	10.3390/ph16091270	2023
	A charge neutral, size tuneable polymersome capable of high biological encapsulation efficiency and cell permeation.	Martin C, Dolmazon E, Moylan K, Fowley C, McHale AP, Callan JF, Callan B.	Int J Pharm	10.1016/j.ijpharm.2014.12.061	2015
	Genotype-associated core bacteria enhance host resistance against kiwifruit bacterial canker.	Fu M, Chen Y, Liu YX, Chang X, Zhang L, Yang X, Li L, Zhang L.	Hortic Res	10.1093/hr/uhae236	2024
Metabolism	Putative bacterial volatile-mediated growth in soybean (Glycine max L. Merrill) and expression of induced proteins under salt stress.	Vaishnav A, Kumari S, Jain S, Varma A, Choudhary DK.	J Appl Microbiol	10.1111/jam.12866	2015
Metabolism	Repeated batch and continuous degradation of chlorpyrifos by Pseudomonas putida.	Pradeep V, Subbaiah UM.	J Environ Sci Health B	10.1080/03601234.2015.1000180	2015
	A comprehensive review of biological and genetic control approaches for leishmaniasis vector sand flies; emphasis towards promoting tools for integrated vector management.	Kumari Y, Gunathilaka N, Amarasinghe D.	PLoS Negl Trop Dis	10.1371/journal.pntd.0012795	2025
	Multi-Pitch Liquid Crystal Filters with Single Layer Polymer Template.	Zhu Z, Gao Y, Lu J.	Polymers (Basel)	10.3390/polym13152521	2021
	Atomistic-Level Insights into the Role of Mutations in the Engineering of PET Hydrolases: A Systematic Review	Karaoli A, Tzoupis H, Papavasileiou K, Papadiamantis A, Mintis D, Kiranoudis C, Lynch I, Melagraki G, Afantitis A.	Int J Mol Sci		2025
	Survivin Promotes Stem Cell Competence for Skin Cancer Initiation.	Canato S, Sarate R, Carvalho-Marques S, Maia Soares R, Song Y, Monteiro-Ferreira S, Vieugue P, Liagre M, Grossi G, Cardoso E, Dubois C, Conway EM, Schenone S, Sanchez-Danes A, Blanpain C.	Cancer Discov	10.1158/2159-8290.cd-24-0263	2025
Phylogeny	Molecular phylogeny of the diatom genus Planothidium with the description of Paraplanothidium gen. nov. and Pseudoplanothidium gen. nov.	Tseplik N, Maltsev Y, Glushchenko A, Genkal S, Kulikovskiy M.	PLoS One	10.1371/journal.pone.0333782	2025
Metabolism	CD Obesity-Prone Rats, but not Obesity-Resistant Rats, Robustly Ferment Resistant Starch Without Increased Weight or Fat Accretion.	Obanda D, Page R, Guice J, Raggio AM, Husseneder C, Marx B, Stout RW, Welsh DA, Taylor CM, Luo M, Blanchard EE, Bendiks Z, Coulon D, Keenan MJ.	Obesity (Silver Spring)	10.1002/oby.22120	2018
Genetics	Genomic highlights of the phylogenetically unique halophilic purple nonsulfur bacterium, Rhodothalassium salexigens.	Madigan MT, Bender KS, Parenteau MN, Kimura Y, Wang-Otomo ZY, Sattley WM.	Extremophiles	10.1007/s00792-025-01380-8	2025
Enzymology	Identification and investigation of a novel NADP⁺-dependent secoisolariciresinol dehydrogenase from Isatis indigotica.	Shi X, Geng J, Feng J, Yang Y, Ma X, Chen W, Xiao Y.	Front Plant Sci	10.3389/fpls.2022.1035121	2022
	[REPRODUCTIVE FUNCTION IN MEN WITH CHRONIC PROSTATITIS: CLINICAL, DISEASE HISTORY AND MICROBIOLOGICAL RISK ASPECTS].	Bozhedomov VA, Semenov AV, Konyshev AV, Lipatova NA, Pacanovskaja GM, Bozhedomova GE, Tret'jakov AV.	Urologiia		2015
	Mechanistic basis for the allosteric activation of NADase activity in the Sir2-HerA antiphage defense system.	Zhen X, Zhou B, Liu Z, Wang X, Zhao H, Wu S, Li Z, Liang J, Zhang W, Zhu Q, He J, Xiong X, Ouyang S.	Nat Commun	10.1038/s41467-024-53614-6	2024
Phylogeny	Diversity and antibiotic resistance profiles of Pseudomonads from a hospital wastewater treatment plant.	Santoro DO, Cardoso AM, Coutinho FH, Pinto LH, Vieira RP, Albano RM, Clementino MM.	J Appl Microbiol	10.1111/jam.12936	2015
Pathogenicity	Genotypic characteristics of multidrug-resistant Pseudomonas aeruginosa from hospital wastewater treatment plant in Rio de Janeiro, Brazil.	Miranda CC, de Filippis I, Pinto LH, Coelho-Souza T, Bianco K, Cacci LC, Picao RC, Clementino MM.	J Appl Microbiol	10.1111/jam.12792	2015
	Effects of a Pseudomonas Strain on the Lipid Transfer Proteins, Appoplast Barriers and Activity of Aquaporins Associated with Hydraulic Conductance of Pea Plants.	Martynenko E, Arkhipova T, Akhiyarova G, Sharipova G, Galin I, Seldimirova O, Ivanov R, Nuzhnaya T, Finkina E, Ovchinnikova T, Kudoyarova G.	Membranes (Basel)	10.3390/membranes13020208	2023
	A novel miRNA mimic attenuates organ injury after hepatic ischemia/reperfusion.	Borjas T, Jacob A, Kobritz M, Patel V, Coppa GF, Aziz M, Wang P.	J Trauma Acute Care Surg	10.1097/ta.0000000000003877	2023
Pathogenicity	Inhibition of quorum-sensing-dependent virulence factors and biofilm formation of clinical and environmental Pseudomonas aeruginosa strains by ZnO nanoparticles.	Garcia-Lara B, Saucedo-Mora MA, Roldan-Sanchez JA, Perez-Eretza B, Ramasamy M, Lee J, Coria-Jimenez R, Tapia M, Varela-Guerrero V, Garcia-Contreras R.	Lett Appl Microbiol	10.1111/lam.12456	2015
	Irritable Bowel Syndrome, Particularly the Constipation-Predominant Form, Involves an Increase in Methanobrevibacter smithii, Which Is Associated with Higher Methane Production.	Ghoshal U, Shukla R, Srivastava D, Ghoshal UC.	Gut Liver	10.5009/gnl15588	2016
	JrMYB44 is required for the accumulation of polyphenols and contributes to drought tolerance in Juglans regia	Gao X, Wang T, Li D, Chen S, Yang S, Li C, Hou S, Xie M, Xu Z, Yang G.	Stress Biol		2025
	Ecological interactions of sand flies, hosts, and Leishmania panamensis in an endemic area of cutaneous leishmaniasis in Colombia.	Posada-Lopez L, Velez-Mira A, Cantillo O, Castillo-Castaneda A, Ramirez JD, Galati EAB, Galvis-Ovallos F.	PLoS Negl Trop Dis	10.1371/journal.pntd.0011316	2023
Metabolism	A plasmid-encoded UmuD homologue regulates expression of Pseudomonas aeruginosa SOS genes.	Diaz-Magana A, Alva-Murillo N, Chavez-Moctezuma MP, Lopez-Meza JE, Ramirez-Diaz MI, Cervantes C.	Microbiology (Reading)	10.1099/mic.0.000103	2015
	In silico identification of compounds from Piper sarmentosum Roxb leaf fractionated extract inhibit interleukin-6 to prevent rheumatoid arthritis.	Dao TNP, Onikanni SA, Fadaka AO, Klein A, Tran V, Le MH, Wang CH, Chang HH.	Front Pharmacol	10.3389/fphar.2024.1358037	2024
	Development of Plant Protein Derived Tri Angular Shaped Nano Zinc Oxide Particles with Inherent Antibacterial and Neurotoxicity Properties.	Hou T, Sankar Sana S, Li H, Wang X, Wang Q, Boya VKN, Vadde R, Kumar R, Kumbhakar DV, Zhang Z, Mamidi N.	Pharmaceutics	10.3390/pharmaceutics14102155	2022
	Syndecan-1 as a severity biomarker for patients with trauma.	Suzuki K, Okada H, Sumi K, Tomita H, Kobayashi R, Ishihara T, Mizuno Y, Yamaji F, Kamidani R, Miura T, Yasuda R, Kitagawa Y, Fukuta T, Suzuki K, Miyake T, Kanda N, Doi T, Yoshida T, Yoshida S, Tetsuka N, Ogura S, Suzuki A.	Front Med (Lausanne)	10.3389/fmed.2022.985955	2022
	Burkholderia pseudomallei BopE suppresses the Rab32-dependent defense pathway to promote its intracellular replication and virulence.	Rao C, Zhang Z, Qiao J, Nan D, Wu P, Wang L, Yao C, Zheng S, Huang J, Liao Y, Liu W, Hu Z, Wang S, Wen Y, Yan J, Mao X, Li Q.	mSphere	10.1128/msphere.00453-24	2024
	Serum Intestinal Metabolites are Raised in Patients with Psoriasis and Metabolic Syndrome.	Sun L, Guo X, Qin Y, Li P, Yu C, Gao X, Xie X, Xu X.	Clin Cosmet Investig Dermatol	10.2147/ccid.s351984	2022
Pathogenicity	Sodium ascorbate as a quorum sensing inhibitor of Pseudomonas aeruginosa.	El-Mowafy SA, Shaaban MI, Abd El Galil KH.	J Appl Microbiol	10.1111/jam.12631	2014
	Polygonatum sibiricum Polysaccharides Attenuate Lipopoly-Saccharide-Induced Septic Liver Injury by Suppression of Pyroptosis via NLRP3/GSDMD Signals.	Xiao L, Qi L, Zhang G, Liu H, Gu Y, Zhang L, Zhang M, Wu H.	Molecules	10.3390/molecules27185999	2022
	In vitro and In silico investigation deciphering novel antifungal activity of endophyte Bacillus velezensis CBMB205 against Fusarium oxysporum.	R V, Granada DL, Skariyachan S, P U, K S.	Sci Rep	10.1038/s41598-024-77926-1	2025
Genetics	Strand-specific community RNA-seq reveals prevalent and dynamic antisense transcription in human gut microbiota.	Bao G, Wang M, Doak TG, Ye Y.	Front Microbiol	10.3389/fmicb.2015.00896	2015
	Patients with hepatocellular carcinoma extrahepatic metastases can benefit from hepatic arterial infusion chemotherapy combined with lenvatinib plus programmed death-1 inhibitors.	Guan R, Zhang N, Deng M, Lin Y, Huang G, Fu Y, Zheng Z, Wei W, Zhong C, Zhao H, Mei J, Guo R.	Int J Surg	10.1097/js9.0000000000001378	2024
	Chemoenzymatic dynamic kinetic resolution of primary amines using a recyclable palladium nanoparticle catalyst together with lipases.	Gustafson KP, Lihammar R, Verho O, Engstrom K, Backvall JE.	J Org Chem	10.1021/jo500508p	2014
	Effects of Signal Peptide and Chaperone Co-Expression on Heterologous Protein Production in Escherichia coli.	Jomrit J, Suhardi S, Summpunn P.	Molecules	10.3390/molecules28145594	2023
	Synergistic effects of Fe nanocomplex and nitrophenolate-based biostimulant on growth and physiological performance of tomato seedlings.	Tavallali V, Darvishzadeh MD.	BMC Plant Biol	10.1186/s12870-025-06930-y	2025
	Body size, blood feeding activity, and fecundity of Psorophora howardii, Psorophora ciliata, and Psorophora ferox (Diptera: Culicidae).	Zhu L, Fulcher A, Hossain T, Davidson C, Beier JC, Xue RD.	J Med Entomol	10.1603/me13175	2014
	Sweet Cherry Plants Prioritize Their Response to Cope with Summer Drought, Overshadowing the Defense Response to Pseudomonas syringae pv. syringae.	Villalobos-Gonzalez L, Carreras C, Beltran MF, Figueroa F, Rubilar-Hernandez C, Opazo I, Toro G, Salvatierra A, Sagredo B, Pizarro L, Fiore N, Pinto M, Arbona V, Gomez-Cadenas A, Pimentel P.	Plants (Basel)	10.3390/plants13131737	2024
Enzymology	Assessing variability among culturable phylloplane basidiomycetous yeasts from Italian agroecosystems.	Ferluga M, Avesani M, Lorenzini M, Zapparoli G.	World J Microbiol Biotechnol	10.1007/s11274-024-04147-z	2024
	Gum katira-silver nanoparticle-based bionanocomposite for the removal of methyl red dye.	Saruchi, Kumar V, Bhatt D, El-Serehy HA, Pandey S.	Front Chem	10.3389/fchem.2022.959104	2022
Pathogenicity	Characterization of antibiotic and disinfectant susceptibility profiles among Pseudomonas aeruginosa veterinary isolates recovered during 1994-2003.	Beier RC, Foley SL, Davidson MK, White DG, McDermott PF, Bodeis-Jones S, Zhao S, Andrews K, Crippen TL, Sheffield CL, Poole TL, Anderson RC, Nisbet DJ.	J Appl Microbiol	10.1111/jam.12707	2015
	Nanostructured Coatings Based on Graphene Oxide for the Management of Periprosthetic Infections.	Constantinescu S, Niculescu AG, Hudita A, Grumezescu V, Radulescu D, Birca AC, Dorcioman G, Gherasim O, Holban AM, Galateanu B, Vasile BS, Grumezescu AM, Bolocan A, Radulescu R.	Int J Mol Sci	10.3390/ijms25042389	2024
	Growth Enhancement and Resistance of Banana Plants to Fusarium Wilt Disease as Affected by Silicate Compounds and Application Frequency.	Zakaria MAT, Sakimin SZ, Ismail MR, Ahmad K, Kasim S.	Plants (Basel)	10.3390/plants13040542	2024
	Trichothiodystrophy-causative pathogenic variants impair a cooperative action of TFIIH and DDX1 in R-loop processing.	Ferri D, Branca G, Lanzafame M, Gandolfi E, Riva V, Maga G, Nardo T, Landi C, Bini L, Arseni L, Peverali FA, Compe E, Orioli D.	Nucleic Acids Res	10.1093/nar/gkaf745	2025
	The Identification of AMT Family Genes and Their Expression, Function, and Regulation in Chenopodium quinoa.	Wang X, Wu H, Manzoor N, Dongcheng W, Su Y, Liu Z, Lin C, Mao Z.	Plants (Basel)	10.3390/plants13243524	2024
	The Extracellular Vesicles Containing Inorganic Polyphosphate of Candida Yeast upon Growth on Hexadecane.	Zvonarev AN, Trilisenko LV, Farofonova VV, Kulakovskaya EV, Abashina TN, Dmitriev VV, Kulakovskaya T.	J Xenobiot	10.3390/jox13040034	2023
	Processor-in-the-Loop validation of direct power control based on fractional-order modified super-twisting algorithm for doubly-fed induction generators.	Yessef M, Benbouhenni H, Lagrioui A, Bizon N, Bossoufi B, Al-Gahtani SF, Elbarbary ZMS.	Sci Rep	10.1038/s41598-025-05874-5	2025
	Species Diversity, Seasonal, and Spatial Distribution of Mosquitoes (Diptera: Culicidae) Captured in Aotus Monkey-Baited Traps in a Forested Site Near Iquitos, Peru.	Andrews ES, Schoeler GB, Gozalo AS, Carbajal F, Lopez-Sifuentes V, Turell MJ.	J Med Entomol	10.1603/me14058	2014
	Triatominae in furnariid nests of the Argentine Gran Chaco.	Marti GA, Echeverria MG, Waleckx E, Susevich ML, Balsalobre A, Gorla DE.	J Vector Ecol	10.1111/j.1948-7134.2014.12071.x	2014
	Integrative Analysis of Fruit Quality and Anthocyanin Accumulation of Plum cv. 'Cuihongli' (Prunus salicina Lindl.) and Its Bud Mutation.	Liao L, Li Y, Lan X, Yang Y, Wei W, Ai J, Feng X, Chen H, Tang Y, Xi L, Wang Z.	Plants (Basel)	10.3390/plants12061357	2023
	Meta-analysis of the efficacy and safety of sevelamer as hyperphosphatemia therapy for hemodialysis patients.	Zeng Q, Zhong Y, Yu X.	Ren Fail	10.1080/0886022x.2023.2210230	2023
	Tracing the stepwise Darwinian evolution of a plant halogenase	Kim C, Kastner D, Mitchell A, Gutierrez M, Yao J, Neumann E, Kulik H, Weng J.	Sci Adv		2025
	Keratinocyte-Mediated Antigen Presentation in Psoriasis: Preliminary Insights from In Vitro Studies.	Zima K, Purzycka-Bohdan D, Szczerkowska-Dobosz A, Gabig-Ciminska M.	Int J Mol Sci	10.3390/ijms252413387	2024
Pathogenicity	Cadmium exposure affects iron acquisition in barley (Hordeum vulgare) seedlings.	Astolfi S, Ortolani MR, Catarcione G, Paolacci AR, Cesco S, Pinton R, Ciaffi M.	Physiol Plant	10.1111/ppl.12207	2014
	The Antimicrobial Effect of Cornus mas L. and Sorbus aucuparia L. Fruit Extracts against Resistant Uropathogens in Correlation with the Prevalence of Urinary Tract Infections in Companion Animals	Aurori M, Novac C, Nadas G, Craciun S, Fit N, Andrei S.	Pharmaceuticals (Basel)		2024
	Comparative Proteomic Analysis Reveals Antibacterial Mechanism of Patrinia scabiosaefolia Against Methicillin Resistant Staphylococcus epidermidis.	Liu X, An L, Ren S, Zhou Y, Peng W.	Infect Drug Resist	10.2147/idr.s350715	2022
	Design, Characterization, and Antibacterial Performance of MAPLE-Deposited Coatings of Magnesium Phosphate-Containing Silver Nanoparticles in Biocompatible Concentrations.	Florea DA, Grumezescu V, Birca AC, Vasile BS, Musat M, Chircov C, Stan MS, Grumezescu AM, Andronescu E, Chifiriuc MC.	Int J Mol Sci	10.3390/ijms23147910	2022
	The structure of the diheme cytochrome c₄ from Neisseria gonorrhoeae reveals multiple contributors to tuning reduction potentials.	Zhong F, Reik ME, Ragusa MJ, Pletneva EV.	J Inorg Biochem	10.1016/j.jinorgbio.2024.112496	2024
Genetics	Deep genome skimming reveals the hybrid origin of Pseudosasa gracilis (Poaceae: Bambusoideae).	Hu XZ, Guo C, Qin SY, Li DZ, Guo ZH.	Plant Divers	10.1016/j.pld.2023.06.001	2024
	Photoreceptor-induced LHL4 protects the photosystem II monomer in Chlamydomonas reinhardtii.	Dannay M, Bertin C, Cavallari E, Albanese P, Tolleter D, Giustini C, Menneteau M, Brugiere S, Coute Y, Finazzi G, Demarsy E, Ulm R, Allorent G.	Proc Natl Acad Sci U S A	10.1073/pnas.2418687122	2025
	Polymerase chain reaction-based assay for the detection and identification of sand fly gregarines in Lutzomyia longipalpis, a vector of visceral leishmaniasis.	Caligiuri LG, Acardi SA, Santini MS, Salomon OD, McCarthy CB.	J Vector Ecol	10.1111/j.1948-7134.2014.12074.x	2014
	Microbiological analysis and bioremediation bioassay for characterization of industrial effluent.	Zabermawi NMO, Alyhaiby AH, El-Bestawy EA.	Sci Rep	10.1038/s41598-022-23480-7	2022
	Purinergic signaling through the P2Y2 receptor regulates osteocytes' mechanosensitivity.	Chougule A, Zhang C, Vinokurov N, Mendez D, Vojtisek E, Shi C, Zhang J, Gardinier J.	J Cell Biol	10.1083/jcb.202403005	2024
Pathogenicity	The Influence of Plant Stress Hormones and Biotic Elicitors on Cyclotide Production in Viola uliginosa Cell Suspension Cultures.	Slazak B, Jedrzejska A, Badyra B, Shariatgorji R, Nilsson A, Andren PE, Goransson U.	Plants (Basel)	10.3390/plants11141876	2022
Phylogeny	Bacterial Community Diversity and Bacterial Interaction Network in Eight Mosquito Species.	da Silva H, Oliveira TMP, Sallum MAM.	Genes (Basel)	10.3390/genes13112052	2022
	Insect-habitat-plant interaction networks provide guidelines to mitigate the risk of transmission of Xylella fastidiosa to grapevine in Southern France.	Mesmin X, Chartois M, Farigoule P, Burban C, Streito JC, Thuillier JM, Pierre E, Lambert M, Mellerin Y, Bonnard O, van Halder I, Fried G, Rasplus JY, Cruaud A, Rossi JP.	PLoS One	10.1371/journal.pone.0332344	2025
Pathogenicity	Integration of targeted metabolome and transcript profiling of Pseudomonas syringae-triggered changes in defence-related phytochemicals in oat plants.	Pretorius CJ, Dubery IA.	Planta	10.1007/s00425-024-04435-w	2024
Enzymology	Formononetin derivatives containing benzyl piperidine: A brand new, highly efficient inhibitor targeting Xanthomonas spp.	Zhang M, Feng S, Song J, Ruan X, Xue W.	J Adv Res	10.1016/j.jare.2024.08.039	2025
	Ammonium Catecholaldehydes as Multifunctional Bioactive Agents: Evaluating Antimicrobial, Antioxidant, and Antiplatelet Activity	Bogdanov A, Tagasheva R, Voloshina A, Lyubina A, Tsivileva O, Kuzovlev A, Yi W, Samorodov A, Ziyatdinova G, Zhiganshina E, Arsenyev M, Bukharov S.	Int J Mol Sci		2025
	Genetic regulation of volatile production in two melon introgression line collections with contrasting ripening behavior.	Mayobre C, Santo Domingo M, Ozkan EN, Fernandez-Borbolla A, Ruiz-Lasierra J, Garcia-Mas J, Pujol M.	Hortic Res	10.1093/hr/uhae020	2024
Metabolism	Long-chain bases and their phosphorylated derivatives differentially regulate cryptogein-induced production of reactive oxygen species in tobacco (Nicotiana tabacum) BY-2 cells.	Coursol S, Fromentin J, Noirot E, Briere C, Robert F, Morel J, Liang YK, Lherminier J, Simon-Plas F.	New Phytol	10.1111/nph.13094	2015
Phylogeny	Management of Meloidogyne incognita on tomato with endophytic bacteria and fresh residue of Wasabia japonica.	Li GJ, Dong QE, Ma L, Huang Y, Zhu ML, Ji YP, Wang QH, Mo MH, Zhang KQ.	J Appl Microbiol	10.1111/jam.12590	2014
	Therapeutic aphorisms for paranoid personality disorder and paranoid ideation treatment: psychological opposites and complementaries in brief therapy.	Paoli B.	Front Psychol	10.3389/fpsyg.2023.1278721	2023
	House dust microbiome differentiation and phage-mediated antibiotic resistance and virulence dissemination in the presence of endocrine-disrupting chemicals and pharmaceuticals.	Du S, Lin H, Luo Q, Man CL, Lai SH, Ho KF, Leung KMY, Lee PKH.	Microbiome	10.1186/s40168-025-02081-2	2025
	High disparity in repellent gland anatomy across major lineages of stick and leaf insects (Insecta: Phasmatodea).	Niekampf M, Meyer P, Quade FSC, Schmidt AR, Salditt T, Bradler S.	BMC Zool	10.1186/s40850-023-00189-2	2024
	The Role of CLE Peptides in the Suppression of Mycorrhizal Colonization of Tomato.	Wulf K, Sun J, Wang C, Ho-Plagaro T, Kwon CT, Velandia K, Correa-Lozano A, Tamayo-Navarrete MI, Reid JB, Garcia Garrido JM, Foo E.	Plant Cell Physiol	10.1093/pcp/pcad124	2024
	Predation-resistant Pseudomonas bacteria engage in symbiont-like behavior with the social amoeba Dictyostelium discoideum.	Steele MI, Peiser JM, Shreenidhi PM, Strassmann JE, Queller DC.	ISME J	10.1038/s41396-023-01535-5	2023
	Inhibition of co-colonizing cystic fibrosis-associated pathogens by Pseudomonas aeruginosa and Burkholderia multivorans.	Costello A, Reen FJ, O'Gara F, Callaghan M, McClean S.	Microbiology (Reading)	10.1099/mic.0.074203-0	2014
	Joint analysis of additive, dominant and first-order epistatic effects of four genes (IGF2, MC4R, PRKAG3 and LEPR) with known effects on fat content and fat distribution in pigs.	Lopez-Buesa P, Burgos C, Galve A, Varona L.	Anim Genet	10.1111/age.12091	2014
	Live and inactivated Piscirickettsia salmonis activated nutritional immunity in Atlantic salmon (Salmo salar).	Martinez D, Oyarzun-Salazar R, Quilapi AM, Coronado J, Enriquez R, Vargas-Lagos C, Oliver C, Santibanez N, Godoy M, Munoz JL, Vargas-Chacoff L, Romero A.	Front Immunol	10.3389/fimmu.2023.1187209	2023
Metabolism	Characterization of the ATP-Dependent Lon-Like Protease in Methanobrevibacter smithii.	Pei J, Yan J, Jiang Y.	Archaea	10.1155/2016/5759765	2016
	Suppression of stripe rust and leaf rust resistances in interspecific crosses of wheat	Chen W, Liu T, Gao L.	Euphytica	10.1007/s10681-012-0854-2	2013
Metabolism	Structural analysis and molecular substrate recognition properties of Arabidopsis thaliana ornithine transcarbamylase, the molecular target of phaseolotoxin produced by Pseudomonas syringae.	Nielipinski M, Pietrzyk-Brzezinska AJ, Wlodawer A, Sekula B.	Front Plant Sci	10.3389/fpls.2023.1297956	2023
Phylogeny	Foliar Lesions Induced by Pestalotiopsis arengae in Oil Palm (O × G) in the Colombian Southwest Palm Zone.	Betancourt-Ortiz WF, Medina-Cardenas HC, Padilla-Agudelo JL, Varon FH, Mestizo-Garzon YA, Morales-Rodriguez A, Sarria-Villa GA.	J Fungi (Basel)	10.3390/jof10010024	2023
	Taxonomic, molecular and ecological approach reveals high diversity of vector sand flies, varied blood source supply and a high detection rate of Leishmania DNA in Colombian Amazon region.	Caviedes-Triana K, Duque-Granda D, Cadavid-Restrepo G, Moreno-Herrera CX, Vivero-Gomez R.	PLoS Negl Trop Dis	10.1371/journal.pntd.0013445	2025
	The Properties of Poly(ester amide)s Based on Dimethyl 2,5-Furanedicarboxylate as a Function of Methylene Sequence Length in Polymer Backbone.	Walkowiak K, Irska I, Zubkiewicz A, Dryzek J, Paszkiewicz S.	Polymers (Basel)	10.3390/polym14112295	2022
	Synthesis of novel antibacterial and antifungal quinoxaline derivatives.	Tang X, Zhou Q, Zhan W, Hu D, Zhou R, Sun N, Chen S, Wu W, Xue W.	RSC Adv	10.1039/d1ra07559d	2022
	Using iDNA to determine impacts of Amazonian deforestation on Leishmania hosts, vectors, and their interactions.	Massey AL, Ferreira da Silva DJ, Vieira CJDSP, Allen JM, Canale GR, Bernardo CSS, de Morais Bronzoni RV, Peres CA, Levi T.	PLoS Negl Trop Dis	10.1371/journal.pntd.0012925	2025
	Development of a Diagnostic Model for Differentiating Tuberculous Spondylitis and Pyogenic Spondylitis With MRI: A Multicenter Retrospective Observational Study.	Wang J, Li Z, Chi X, Chen Y, Wang H, Wang X, Cui K, Wang Q, Lu T, Zheng J, Zhang Q, Hao Y.	Spine (Phila Pa 1976)	10.1097/brs.0000000000004848	2024
Phylogeny	Discrimination of Stressed and Non-Stressed Food-Related Bacteria Using Raman-Microspectroscopy.	Klein D, Breuch R, Reinmuller J, Engelhard C, Kaul P.	Foods	10.3390/foods11101506	2022
	Extraction Optimization, Structural Analysis, and Potential Bioactivities of a Novel Polysaccharide from Sporisorium reilianum.	Shi H, Zhang S, Zhu M, Li X, Jie W, Kan L.	Antioxidants (Basel)	10.3390/antiox13080965	2024
Phylogeny	Description of male, pupa and larva of Psorophora (Grabhamia) paulli and redescription of the female (Diptera: Culicidae).	Stein M, Carlos Rossi G, Ricardo Almiron W.	Zootaxa	10.11646/zootaxa.3686.3.8	2013
	Modified pea apyrase has altered nuclear functions and enhances the growth of yeast and Arabidopsis.	Tripathy MK, Wang H, Slocum RD, Jiang HW, Nam JC, Sabharwal T, Veerappa R, Brown KA, Cai X, Faull PA, Clark G, Roux SJ.	Front Plant Sci	10.3389/fpls.2025.1584871	2025
	Dietary Pelargonium Sidoides extract mitigates thermal stress in Oreochromis niloticus: physiological and immunological insights.	Abu-Zahra NIS, Atia AA, Elseify MM, Abass ME, Soliman S.	Vet Res Commun	10.1007/s11259-025-10705-z	2025
	Piper sarmentosum: a new hope for the treatment of osteoporosis.	Mohd Ramli ES, Suhaimi F, Ahmad F, Shuid AN, Mohamad N, Ima-Nirwana S.	Curr Drug Targets	10.2174/13894501113146660228	2013
	Epidemiology and Risk Factors of UTIs in Children-A Single-Center Observation.	Daniel M, Szymanik-Grzelak H, Sierdzinski J, Podsiadly E, Kowalewska-Mlot M, Panczyk-Tomaszewska M.	J Pers Med	10.3390/jpm13010138	2023
Metabolism	On the natural fate of maleic hydrazide. Kinetic aspects of the photochemical and microbiological degradation of the herbicide.	Pajares A, Bregliani M, Massad W, Natera J, Challier C, Boiero L, Montenegro M, Garcia NA.	J Photochem Photobiol B	10.1016/j.jphotobiol.2014.04.002	2014
	Quantification of nanoscale silver particles removal and release from municipal wastewater treatment plants in Germany.	Li L, Hartmann G, Doblinger M, Schuster M.	Environ Sci Technol	10.1021/es3041658	2013
Pathogenicity	Assessment of six Indian cultivars of mung bean against ozone by using foliar injury index and changes in carbon assimilation, gas exchange, chlorophyll fluorescence and photosynthetic pigments.	Chaudhary N, Singh S, Agrawal SB, Agrawal M.	Environ Monit Assess	10.1007/s10661-013-3136-0	2013
	Myasthenia gravis and independent risk factors for recurrent infection: a retrospective cohort study.	Chien CY, Chang CW, Liao MF, Chu CC, Ro LS, Wu YR, Chang KH, Chen CM, Kuo HC.	BMC Neurol	10.1186/s12883-023-03306-3	2023
	Molecular cytogenetic characterization of a new wheat-Thinopyrum intermedium homoeologous group-6 chromosome disomic substitution line with resistance to leaf rust and stripe rust.	Zhang X, Li J, Ge Y, Guan H, Li G, Zhang S, Wang X, Li X, Chang Z, Zhang P, Jia J, Liu C.	Front Plant Sci	10.3389/fpls.2022.1006281	2022
	Lipolysis and Sterol Stability and Bioaccessibility of Wholemeal Rye Bread Enriched with Plant Sterols Subjected to Adult and Elderly Digestion Conditions.	Blanco-Morales V, Mercatante D, Faubel N, Miedes D, Mandrioli M, Rodriguez-Estrada MT, Garcia-Llatas G.	J Agric Food Chem	10.1021/acs.jafc.4c03104	2024
	Control of Phytophthora nicotianae disease, induction of defense responses and genes expression of papaya fruits treated with Pseudomonas putida MGP1	Shi J, Liu A, Li X, Chen W.	Journal of the Science of Food and Agriculture.		2013
	Computer-Aid Directed Evolution of GPPS and PS Enzymes.	Chen F, Cheng H, Zhu J, Wang S, Zhang L, Dong H, Liu G, Chen H.	Biomed Res Int	10.1155/2021/6653500	2021
	Macroporous Mannitol Granules Produced by Spray Drying and Sacrificial Templating.	Valentin M, Coibion D, Vertruyen B, Malherbe C, Cloots R, Boschini F.	Materials (Basel)	10.3390/ma16010025	2022
	From the inside out: Were the cuticular Pseudonocardia bacteria of fungus-farming ants originally domesticated as gut symbionts?	Innocent TM, Sapountzis P, Zhukova M, Poulsen M, Schiott M, Nash DR, Boomsma JJ.	PNAS Nexus	10.1093/pnasnexus/pgae391	2024
	The Application of Active Biomonitoring with the Use of Mosses to Identify Polycyclic Aromatic Hydrocarbons in an Atmospheric Aerosol.	Swislowski P, Hrabak P, Waclawek S, Liskova K, Antos V, Rajfur M, Zabkowska-Waclawek M.	Molecules	10.3390/molecules26237258	2021
	Unraveling the molecular mechanism of polysaccharide lyases for efficient alginate degradation.	Rivas-Fernandez JP, Vuillemin M, Pilgaard B, Klau LJ, Fredslund F, Lund-Hanssen C, Welner DH, Meyer AS, Morth JP, Meilleur F, Aachmann FL, Rovira C, Wilkens C.	Nat Commun	10.1038/s41467-025-56754-5	2025
Enzymology	Revisiting the metal sites of nitrous oxide reductase in a low-dose structure from Marinobacter nauticus.	Pomowski A, Dell'Acqua S, Wust A, Pauleta SR, Moura I, Einsle O.	J Biol Inorg Chem	10.1007/s00775-024-02056-y	2024
Transcriptome	Integrated transcriptomic and metabolomic analyses reveal tissue-specific accumulation and expression patterns of monoterpene glycosides, gallaglycosides, and flavonoids in Paeonia Lactiflora Pall.	Xu P, Li J, Chen C, Chen J, Yang M, Deng H, Jiang X, Lou K, Wu X, Chen R, Hu Y, Liang W, Pu J.	BMC Genomics		2025
	Enhancing Pisum sativum growth and symbiosis under heat stress: the synergistic impact of co-inoculated bacterial consortia and ACC deaminase-lacking Rhizobium.	Ben Gaied R, Sbissi I, Tarhouni M, Brigido C.	Arch Microbiol	10.1007/s00203-024-03943-3	2024
Enzymology	Occurrence of non-fermenting gram negative bacteria in drinking water dispensed from point-of-use microfiltration devices.	Zanetti F, de Luca G, Leoni E, Sacchetti R.	Ann Agric Environ Med		2014
Metabolism	Novel description of mcl-PHA biosynthesis by Pseudomonas chlororaphis from animal-derived waste.	Muhr A, Rechberger EM, Salerno A, Reiterer A, Malli K, Strohmeier K, Schober S, Mittelbach M, Koller M.	J Biotechnol	10.1016/j.jbiotec.2013.02.003	2013
	Burrow behaviour, structure and utilization of the amphibious mudskipper Periophthalmus chrysospilos Bleeker, 1853 in the Mekong Delta.	Dinh QM, Nguyen THD.	Saudi J Biol Sci	10.1016/j.sjbs.2022.103525	2023
	Virulence factors and infection ability of Pseudomonas aeruginosa isolates from a hydropathic facility and respiratory infections.	Pereira SG, Rosa AC, Ferreira AS, Moreira LM, Proenca DN, Morais PV, Cardoso O.	J Appl Microbiol	10.1111/jam.12463	2014
Pathogenicity	Manuka honey inhibits siderophore production in Pseudomonas aeruginosa.	Kronda JM, Cooper RA, Maddocks SE.	J Appl Microbiol	10.1111/jam.12222	2013
	Preservative effect of pomegranate-based marination with beta-resorcylic acid and cinnamaldehyde on the microbial quality of chicken liver.	Osaili TM, Hasan F, Dhanasekaran DK, Arasudeen A, Cheikh Ismail L, Hasan H, Hashim M, Faris MAE, Radwan H, Naja F, Savvaidis IN, Obaid RS, Holley R.	Poult Sci	10.1016/j.psj.2023.103285	2024
	Asymmetric response of the Indian summer monsoon to positive and negative phases of major tropical climate patterns.	Chakraborty A, Singhai P.	Sci Rep	10.1038/s41598-021-01758-6	2021
	Synergistic antimicrobial effect and mode of action of palmarosa oil-loaded nanoemulsion and citric acid against Pectobacterium carotovorum.	Park JH, Kim S, Chang Y, Imm JY.	Food Sci Biotechnol	10.1007/s10068-022-01217-6	2023
Phylogeny	Highly divergent and diverse viral community infecting sylvatic mosquitoes from Northeast Brazil.	da Silva AF, Machado LC, da Silva LMI, Dezordi FZ, Wallau GL.	J Virol	10.1128/jvi.00083-24	2024
	Structural and functional characterization of cyclic pyrimidine-regulated anti-phage system.	Hou MH, Chen CJ, Yang CS, Wang YC, Chen Y.	Nat Commun	10.1038/s41467-024-49861-2	2024
	Novel systems modeling methodology in comparative microbial metabolomics: identifying key enzymes and metabolites implicated in autism spectrum disorders.	Heberling C, Dhurjati P.	Int J Mol Sci	10.3390/ijms16048949	2015
	High-throughput characterization of bacterial responses to complex mixtures of chemical pollutants.	Smith TP, Clegg T, Ransome E, Martin-Lilley T, Rosindell J, Woodward G, Pawar S, Bell T.	Nat Microbiol	10.1038/s41564-024-01626-9	2024
	Psoriasis and Leprosy: An Arcane Relationship.	Ge G, Shang J, Gan T, Chen Z, Pan C, Mei Y, Long S, Wu A, Wang H.	J Inflamm Res	10.2147/jir.s407650	2023
Genetics	Understanding species limits through the formation of phylogeographic lineages.	Burbrink FT, Myers EA, Pyron RA.	Ecol Evol	10.1002/ece3.70263	2024
	Combating Bacterial Biofilm Formation in Urinary Catheter by Green Silver Nanoparticle.	Goda RM, El-Baz AM, Khalaf EM, Alharbi NK, Elkhooly TA, Shohayeb MM.	Antibiotics (Basel)	10.3390/antibiotics11040495	2022
	What Drives the Alien Parrot Richness and Occurrence in Urban Green Spaces along the Annual Cycle in Buenos Aires City, Argentina?	Santiago SM, Paes Cavalcante N, Leveau LM.	Animals (Basel)	10.3390/ani13213426	2023
Metabolism	Individual and interactive effects of elevated carbon dioxide and ozone on tropical wheat (Triticum aestivum L.) cultivars with special emphasis on ROS generation and activation of antioxidant defence system.	Mishra AK, Rai R, Agrawal SB.	Indian J Biochem Biophys		2013
	Rapid detection of grass carp reovirus type 1 using RPA-based test strips combined with CRISPR Cas13a system.	Li H, Cao X, Chen R, Guang M, Xu M, Wu X, Yang R, Lei L, Zhang F.	Front Microbiol	10.3389/fmicb.2023.1296038	2023
	Dysregulation of Bile Acids, Lipids, and Nucleotides in Psoriatic Arthritis Revealed by Unbiased Profiling of Serum Metabolites.	Paine A, Brookes PS, Bhattacharya S, Li D, De La Luz Garcia-Hernandez M, Tausk F, Ritchlin C.	Arthritis Rheumatol	10.1002/art.42288	2023
	A diterpene synthase from the sandfly Lutzomyia longipalpis produces the pheromone sobralene.	Ducker C, Baines C, Guy J, Euzebio Goulart Santana A, Pickett JA, Oldham NJ.	Proc Natl Acad Sci U S A	10.1073/pnas.2322453121	2024
	Modification of the Folmer primers for the cytochrome c oxidase gene facilitates identification of mosquitoes.	Hoque MM, Valentine MJ, Kelly PJ, Barua S, Murillo DFB, Wang C.	Parasit Vectors	10.1186/s13071-022-05494-2	2022
Metabolism	Characteristics of a water-forming NADH oxidase from Methanobrevibacter smithii, an archaeon in the human gut.	Yan M, Yin W, Fang X, Guo J, Shi H.	Biosci Rep	10.1042/bsr20160357	2016
	Distal segment extracts of the degenerated rat sciatic nerve induce bone marrow stromal cells to express Schwann cell markers in vitro.	Wang H, Zhang H, Liu M, Wang N.	Neurosci Lett	10.1016/j.neulet.2013.03.048	2013
	Gut-resident Phascolarctobacterium succinatutens decreases fat accumulation via MYC-driven epigenetic regulation of arginine biosynthesis.	Lan Q, Liufu S, Chen B, Wang K, Chen W, Xiao L, Liu X, Yi L, Liu J, Xu X, Liu C, Liu M, Yin Y, Ma H.	NPJ Biofilms Microbiomes	10.1038/s41522-025-00792-w	2025
Enzymology	Screening of promoter-specific transcription factors: multiple regulators for the sdiA gene involved in cell division control and quorum sensing.	Shimada K, Ogasawara H, Yamada K, Shimura M, Kori A, Shimada T, Yamanaka Y, Yamamoto K, Ishihama A.	Microbiology (Reading)	10.1099/mic.0.067538-0	2013
	Ascorbate Peroxidase 2 (APX2) of Chlamydomonas Binds Copper and Modulates the Copper Insertion into Plastocyanin.	Caccamo A, Vega de Luna F, Wahni K, Volkov AN, Przybyla-Toscano J, Amelii A, Kriznik A, Rouhier N, Messens J, Remacle C.	Antioxidants (Basel)	10.3390/antiox12111946	2023
	Abundance and diversity of host-seeking adult female mosquitoes in a coastal ecosystem in southern Mexico.	Canales-Delgadillo JC, Vazquez-Perez N, Viveros-Santos V, Perez-Ceballos R, Cardoso-Mohedano JG, Zaldivar-Jimenez A, Celis-Hernandez O, Gomez-Ponce A, Merino-Ibarra M.	PLoS Negl Trop Dis	10.1371/journal.pntd.0012316	2025
Metabolism	Metabolic Synergy between Human Symbionts Bacteroides and Methanobrevibacter.	Catlett JL, Carr S, Cashman M, Smith MD, Walter M, Sakkaff Z, Kelley C, Pierobon M, Cohen MB, Buan NR.	Microbiol Spectr	10.1128/spectrum.01067-22	2022
	Formulation development of the deleterious rhizobacterium Pseudomonas trivialis X33d for biocontrol of brome (Bromus diandrus) in durum wheat.	Mejri D, Gamalero E, Souissi T.	J Appl Microbiol	10.1111/jam.12036	2013
	Quarantine Disinfestation of Papaya Mealybug, Paracoccus marginatus (Hemiptera: Pseudococcidae) Using Gamma and X-rays Irradiation.	Song ZJ, Zhao QY, Ma C, Chen RR, Ma TB, Li ZH, Zhan GP.	Insects	10.3390/insects14080682	2023
Pathogenicity	Specificity of the neutralizers as the cause of errors in evaluating disinfectant efficacy: an assessment of triclosan.	Fernandez-Crehuet M, Espigares M, Moreno E, Espigares E.	Lett Appl Microbiol	10.1111/lam.12142	2013
	Environmental factors driving the abundance of Philaenus spumarius in mesomediterranean habitats of Corsica (France).	Chartois M, Mesmin X, Quiquerez I, Borgomano S, Farigoule P, Pierre E, Thuillier JM, Streito JC, Casabianca F, Hugot L, Rossi JP, Rasplus JY, Cruaud A.	Sci Rep	10.1038/s41598-023-28601-4	2023
	Enzymatic oxidation of galacturonides from pectin breakdown contributes to stealth infection by Oomycota phytopathogens.	Turella S, He C, Zhao L, Banerjee S, Plouhinec L, Assiah Yao R, Norgaard Kejlstrup MC, Grisel S, So Y, Annic B, Fanuel M, Haddad Momeni M, Bissaro B, Meier S, Morth JP, Dong S, Berrin JG, Abou Hachem M.	Nat Commun	10.1038/s41467-025-58668-8	2025
	Plant Growth-Promoting Activities of Bacteria Isolated from an Anthropogenic Soil Located in Agrigento Province.	Barbaccia P, Gaglio R, Dazzi C, Miceli C, Bella P, Lo Papa G, Settanni L.	Microorganisms	10.3390/microorganisms10112167	2022
	Antifungal and Herbicidal Potential of Piper Essential Oils from the Peruvian Amazonia.	Ruiz-Vasquez L, Ruiz Mesia L, Caballero Ceferino HD, Ruiz Mesia W, Andres MF, Diaz CE, Gonzalez-Coloma A.	Plants (Basel)	10.3390/plants11141793	2022
Pathogenicity	Effect of diets containing whole white lupin seeds on rabbit doe milk yield and milk fatty acid composition as well as the growth and health of their litters.	Volek Z, Marounek M, Volkova L, Kudrnova E.	J Anim Sci	10.2527/jas.2013-7120	2014
	Biologically-induced synthetic manganese carbonate precipitate (BISMCP) for potential applications in heavy metal removal.	Dewi AK, Sharma RK, Das K, Sukul U, Lin PY, Huang YH, Lu CM, Lu CK, Chen TH, Chen CY.	Heliyon	10.1016/j.heliyon.2023.e15919	2023
	Proof of concept for a single-dose Group B Streptococcus vaccine based on capsular polysaccharide conjugated to Qbeta virus-like particles.	Carboni F, Cozzi R, Romagnoli G, Tuscano G, Balocchi C, Buffi G, Bodini M, Brettoni C, Giusti F, Marchi S, Brogioni G, Brogioni B, Cinelli P, Cappelli L, Nocciolini C, Senesi S, Facciotti C, Frigimelica E, Fabbrini M, Stranges D, Savino S, Maione D, Adamo R, Wizel B, Margarit I, Romano MR.	NPJ Vaccines	10.1038/s41541-023-00744-5	2023
	Probiotic potentials of lactic acid bacteria isolated from Egyptian fermented food.	Abdel Tawab FI, Abd Elkadr MH, Sultan AM, Hamed EO, El-Zayat AS, Ahmed MN.	Sci Rep	10.1038/s41598-023-43752-0	2023
	Ecological predictors of mosquito population and arbovirus transmission synchrony estimates.	McMillan JR, Chaves LF, Armstrong PM.	J Med Entomol	10.1093/jme/tjad024	2023
Pathogenicity	The attack of the phytopathogens and the trumpet solo: Identification of a novel plant antifungal peptide with distinct fold and disulfide bond pattern.	Mandal SM, Porto WF, Dey P, Maiti MK, Ghosh AK, Franco OL.	Biochimie	10.1016/j.biochi.2013.06.027	2013
Enzymology	Flagellin, a plant-defense-activating protein identified from Xanthomonas axonopodis pv. Dieffenbachiae invokes defense response in tobacco.	Mani T, Joshi JB, Priyadharshini R, Sharmila JS, Uthandi S.	BMC Microbiol	10.1186/s12866-023-03028-z	2023
Metabolism	Enhanced cadmium resistance and accumulation in Pseudomonas putida KT2440 expressing the phytochelatin synthase gene of Schizosaccharomyces pombe.	Yong X, Chen Y, Liu W, Xu L, Zhou J, Wang S, Chen P, Ouyang P, Zheng T.	Lett Appl Microbiol	10.1111/lam.12185	2014
	Antibody enhanced HPLC for serotype-specific quantitation of polysaccharides in pneumococcal conjugate vaccine.	Deng JZ, Kuster N, Drumheller A, Lin M, Ansbro F, Grozdanovic M, Samuel R, Zhuang P.	NPJ Vaccines	10.1038/s41541-022-00584-9	2023
	Quinolone-mediated metabolic cross-feeding develops aluminium tolerance in soil microbial consortia.	Ma Z, Jiang M, Liu C, Wang E, Bai Y, Yuan MM, Shi S, Zhou J, Ding J, Xie Y, Zhang H, Yang Y, Shen R, Crowther TW, Zhang J, Liang Y.	Nat Commun	10.1038/s41467-024-54616-0	2024
	Cefotaxime Mediated Synthesis of Gold Nanoparticles: Characterization and Antibacterial Activity.	Al Hagbani T, Rizvi SMD, Hussain T, Mehmood K, Rafi Z, Moin A, Abu Lila AS, Alshammari F, Khafagy ES, Rahamathulla M, Abdallah MH.	Polymers (Basel)	10.3390/polym14040771	2022
Pathogenicity	Sub-lethal concentrations of antibiotics increase mutation frequency in the cystic fibrosis pathogen Pseudomonas aeruginosa.	Nair CG, Chao C, Ryall B, Williams HD.	Lett Appl Microbiol	10.1111/lam.12032	2013
	Changes of Active Substances in Ganoderma lucidum during Different Growth Periods and Analysis of Their Molecular Mechanism.	Gao X, Huo H, Bao H, Wang J, Gao D.	Molecules	10.3390/molecules29112591	2024
	Canopy Architecture and Sun Exposure Influence Berry Cluster-Water Relations in the Grapevine Variety Muscat of Alexandria.	Zarrouk O, Pinto C, Alarcon MV, Flores-Roco A, Santos L, David TS, Amancio S, Lopes CM, Carvalho LC.	Plants (Basel)	10.3390/plants13111500	2024
	Development of the genital microflora in stallions used for artificial insemination throughout the breeding season.	Pasing SS, Aurich C, von Lewinski M, Wulf M, Kruger M, Aurich JE.	Anim Reprod Sci	10.1016/j.anireprosci.2013.03.009	2013
Phylogeny	Plant species identity and plant-induced changes in soil physicochemistry-but not plant phylogeny or functional traits - shape the assembly of the root-associated soil microbiome.	Byers AK, Condron LM, O'Callaghan M, Waller L, Dickie IA, Wakelin SA.	FEMS Microbiol Ecol	10.1093/femsec/fiad126	2023
	Thixotropic Red Microalgae Sulfated Polysaccharide-Peptide Composite Hydrogels as Scaffolds for Tissue Engineering.	Halperin-Sternfeld M, Netanel Liberman G, Kannan R, Netti F, Ma PX, Arad SM, Adler-Abramovich L.	Biomedicines	10.3390/biomedicines10061388	2022
	Structural Characterization and Antidepressant-like Effects of Polygonum sibiricum Polysaccharides on Regulating Microglial Polarization in Chronic Unpredictable Mild Stress-Induced Zebrafish.	Zhang Y, Wang D, Liu J, Bai Y, Fan B, Lu C, Wang F.	Int J Mol Sci	10.3390/ijms25042005	2024
	Multifunctional Nanomaterials for Biofortification and Protection of Tomato Plants.	Parra-Torrejon B, Caceres A, Sanchez M, Sainz L, Guzman M, Bermudez-Perez FJ, Ramirez-Rodriguez GB, Delgado-Lopez JM.	Environ Sci Technol	10.1021/acs.est.3c02559	2023
	Positronium Lifetime Image Reconstruction for TOF PET.	Qi J, Huang B.	IEEE Trans Med Imaging	10.1109/tmi.2022.3174561	2022
	Rational design of a nitrite reductase based on myoglobin: a molecular modeling and dynamics simulation study.	Lin YW, Nie CM, Liao LF.	J Mol Model	10.1007/s00894-012-1451-y	2012
	Tuning the Photophysical Properties of Ru(II) Photosensitizers for PDT by Protonation and Metallation: A DFT Study.	Spiegel M, Adamo C.	J Phys Chem A	10.1021/acs.jpca.3c00839	2023
Pathogenicity	Patrinia scabiosaefolia induces mitochondrial-dependent apoptosis in a mouse model of colorectal cancer.	Liu L, Shen A, Chen Y, Wei L, Lin J, Sferra TJ, Hong Z, Peng J.	Oncol Rep	10.3892/or.2013.2528	2013
	Phylogeography and host specificity of Pasteurellaceae pathogenic to sea-farmed fish in the north-east Atlantic.	Gulla S, Colquhoun DJ, Olsen AB, Spilsberg B, Lagesen K, Akesson CP, Strom S, Manji F, Birkbeck TH, Nilsen HK.	Front Microbiol	10.3389/fmicb.2023.1236290	2023
	Facile synthesis, physiochemical characterization and bio evaluation of sulfadimidine capped cobalt nanoparticles.	Nagababu U, Shanmukha Kumar JV, Rafi Shaik M, Sharaf MAF.	Saudi J Biol Sci	10.1016/j.sjbs.2021.02.071	2021
Phylogeny	New records of mosquito species (Diptera: Culicidae) from Neuquén and La Rioja provinces, Argentina.	Grech M, Visintin A, Laurito M, Estallo E, Lorenzo P, Roccia I, Korin M, Goya F, Luduena-Almeida F, Almiron W.	Rev Saude Publica	10.1590/s0034-89102012005000007	2012
	Application of bacteria and bacteriophage cocktails for biological control of houseflies.	Zhang K, Wang S, Li Y, Yin Y, Zhang X, Zhang Q, Kong X, Liu W, Yao D, Zhang R, Zhang Z.	Parasit Vectors	10.1186/s13071-023-06082-8	2024
Metabolism	Stochasticity of TOL plasmid catabolic promoters sets a bimodal expression regime in Pseudomonas putida mt-2 exposed to m-xylene.	Silva-Rocha R, de Lorenzo V.	Mol Microbiol	10.1111/j.1365-2958.2012.08184.x	2012
	Feeding patterns of mosquitoes (Diptera: Culicidae) in six Brazilian environmental preservation areas.	dos Santos Silva J, Alencar J, Costa JM, Seixas-Lorosa E, Guimaraes AE.	J Vector Ecol	10.1111/j.1948-7134.2012.00237.x	2012
Enzymology	The importance of laboratory water quality for studying initial bacterial adhesion during NF filtration processes.	Semiao AJ, Habimana O, Cao H, Heffernan R, Safari A, Casey E.	Water Res	10.1016/j.watres.2013.03.020	2013
	Pheromone-based monitoring of Pseudococcus maritimus (Hemiptera: Pseudococcidae) populations in concord grape vineyards.	Bahder BW, Naidu RA, Daane KM, Millar JG, Walsh DB.	J Econ Entomol	10.1603/ec12138	2013
	Attenuation of Pseudomonas aeruginosa virulence by marine invertebrate-derived Streptomyces sp.	Naik DN, Wahidullah S, Meena RM.	Lett Appl Microbiol	10.1111/lam.12034	2013
	Trypanosoma cruzi Parasite Burdens of Several Triatomine Species in Colombia.	Velasquez-Ortiz N, Hernandez C, Cantillo-Barraza O, Ballesteros N, Cruz-Saavedra L, Herrera G, Buitrago LS, Soto H, Medina M, Palacio J, Gonzalez MS, Cuervo A, Vallejo G, Zuleta Duenas L, Urbano P, Munoz M, Ramirez JD.	Trop Med Infect Dis	10.3390/tropicalmed7120445	2022
Proteome	Uncovering the therapeutic potential of green pea waste in breast cancer: a multi-target approach utilizing LC-MS/MS metabolomics, molecular networking, and network pharmacology.	Khalil AM, Sabry OM, El-Askary HI, El Zalabani SM, Eltanany BM, Pont L, Benavente F, Mohamed AF, Fayek NM.	BMC Complement Med Ther	10.1186/s12906-024-04669-x	2024
	Resequencing of the IL12B gene in psoriasis patients with the rs6887695/rs3212227 risk genotypes.	Eiris N, Santos-Juanes J, Coto-Segura P, Gomez J, Alvarez V, Morales B, Queiro R, Diaz M, Corao AI, Lopez-Corte K, Coto E.	Cytokine	10.1016/j.cyto.2012.05.030	2012
Enzymology	Detection and enumeration of Pseudomonas aeruginosa in soil and manure assessed by an ecfX qPCR assay.	Colinon C, Deredjian A, Hien E, Brothier E, Bouziri L, Cournoyer B, Hartman A, Henry S, Jolivet C, Ranjard L, Nazaret S.	J Appl Microbiol	10.1111/jam.12189	2013
	From linoleic acid to hexanal and hexanol by whole cell catalysis with a lipoxygenase, hydroperoxide lyase and reductase cascade in Komagataella phaffii.	Hashem C, Hochrinner J, Burgler MB, Rinnofner C, Pichler H, Winkler M.	Front Mol Biosci	10.3389/fmolb.2022.965315	2022
	Vectors as Sentinels: Rising Temperatures Increase the Risk of Xylella fastidiosa Outbreaks.	Farigoule P, Chartois M, Mesmin X, Lambert M, Rossi JP, Rasplus JY, Cruaud A.	Biology (Basel)	10.3390/biology11091299	2022
Phylogeny	In Vitro Evaluation of Five Newly Isolated Bacteriophages against E. faecalis Biofilm for Their Potential Use against Post-Treatment Apical Periodontitis.	Voit M, Trampuz A, Gonzalez Moreno M.	Pharmaceutics	10.3390/pharmaceutics14091779	2022
	Control of Phytophthora nicotianae disease, induction of defense responses and genes expression of papaya fruits treated with Pseudomonas putida MGP1.	Shi J, Liu A, Li X, Chen W.	J Sci Food Agric	10.1002/jsfa.5831	2013
	Polysaccharide-specific memory B cells generated by conjugate vaccines in humans conform to the CD27+IgG+ isotype-switched memory B Cell phenotype and require contact-dependent signals from bystander T cells activated by bacterial proteins to differentiate into plasma cells.	Clarke ET, Williams NA, Findlow J, Borrow R, Heyderman RS, Finn A.	J Immunol	10.4049/jimmunol.1203254	2013
Genetics	The diversity of the pathogenic Oomycete (Aphanomyces astaci) chitinase genes within the genotypes indicate adaptation to its hosts.	Makkonen J, Jussila J, Kokko H.	Fungal Genet Biol	10.1016/j.fgb.2012.05.014	2012
	Profiling of Volatile Organic Compounds from Four Plant Growth-Promoting Rhizobacteria by SPME-GC-MS: A Metabolomics Study.	Mhlongo MI, Piater LA, Dubery IA.	Metabolites	10.3390/metabo12080763	2022
	The Common Bean Small Heat Shock Protein Nodulin 22 from Phaseolus vulgaris L. Assembles into Functional High-Molecular-Weight Oligomers.	Fernandez-Silva A, Lledias F, Rodriguez-Lopez J, Olivares JE, French-Pacheco L, Trevino M, Amero C, Diaz-Camino C.	Molecules	10.3390/molecules27248681	2022
Pathogenicity	Prenatal Stress Increases the Risk of the FPR2-related Dysfunction in the Brain's Resolution of Inflammation: A Study on the Humanized APP^NL-F/NL-F Mouse Model of Alzheimer's Disease.	Trojan E, Frydrych J, Lason W, Basta-Kaim A.	Curr Neuropharmacol	10.2174/011570159x345385241004060055	2025
Enzymology	A novel salt- and organic solvent-tolerant phosphite dehydrogenase from Cyanothece sp. ATCC 51142.	Abdel-Hady GN, Tajima T, Ikeda T, Ishida T, Funabashi H, Kuroda A, Hirota R.	Front Bioeng Biotechnol	10.3389/fbioe.2023.1255582	2023
	Microbiome mapping in dairy industry reveals new species and genes for probiotic and bioprotective activities.	De Filippis F, Valentino V, Yap M, Cabrera-Rubio R, Barcenilla C, Carlino N, Cobo-Diaz JF, Quijada NM, Calvete-Torre I, Ruas-Madiedo P, Sabater C, Sequino G, Pasolli E, Wagner M, Margolles A, Segata N, Alvarez-Ordonez A, Cotter PD, Ercolini D.	NPJ Biofilms Microbiomes	10.1038/s41522-024-00541-5	2024
	KLK10/LIPH/PARD6B/SLC52A3 are promising molecular biomarkers for the prognosis of pancreatic cancer through a ceRNA network.	Zhang M, Jiang L, Liu XY, Liu FX, Zhang H, Zhang YJ, Tang XM, Ma YS, Wu HY, Diao X, Yang C, Liu JB, Fu D, Zhang J, Yu H.	Heliyon	10.1016/j.heliyon.2024.e24287	2024
Pathogenicity	Piper sarmentosum is comparable to glycyrrhizic acid in reducing visceral fat deposition in adrenalectomised rats given dexamethasone.	Fairus A, Ima Nirwana S, Elvy Suhana MR, Tan MH, Santhana R, Farihah HS.	Clin Ter	10.7417/ct.2013.1502	2013
Proteome	Psoriasis Vulgaris of Blood Heat Syndrome in Plasma Based on Widely Targeted Techniques.	Tang X, Gong J, Jiang Y, Chen X, Qi D, Li X.	J Healthc Eng	10.1155/2022/2113769	2022
	Oral Delivery of Psoralidin by Mucoadhesive Surface-Modified Bilosomes Showed Boosted Apoptotic and Necrotic Effects against Breast and Lung Cancer Cells.	Youness RA, Al-Mahallawi AM, Mahmoud FH, Atta H, Braoudaki M, Fahmy SA.	Polymers (Basel)	10.3390/polym15061464	2023
	Polysorbate 21 Can Modulate the Antibacterial Potential of Two Pyrazol Derivatives.	Aonofriesei F.	Biomolecules	10.3390/biom12121819	2022
	Effects of abiotic stresses on the expression of chitinase-like genes in Acyrthosiphon pisum.	Li C, Ul Haq I, Khurshid A, Tao Y, Quandahor P, Zhou JJ, Liu CZ.	Front Physiol	10.3389/fphys.2022.1024136	2022
	High Disinfectant Tolerance in Pseudomonas spp. Biofilm Aids the Survival of Listeria monocytogenes.	Thomassen GMB, Reiche T, Hjorungnes M, Mehli L.	Microorganisms	10.3390/microorganisms11061414	2023
	Bacterial and Fungal Keratitis in a Tertiary Care Hospital from Romania.	Balasoiu AT, Balasoiu M, Zlatian OM, Ghenea AE.	Microorganisms	10.3390/microorganisms12040787	2024
Metabolism	Variability in the concentrations of volatile metabolites emitted by genotypically different strains of Pseudomonas aeruginosa.	Shestivska V, Spanel P, Dryahina K, Sovova K, Smith D, Musilek M, Nemec A.	J Appl Microbiol	10.1111/j.1365-2672.2012.05370.x	2012
	Exogenous inoculation of endophyte Penicillium sp. alleviated pineapple internal browning during storage.	Shen F, Wang G, Liu X, Zhu S.	Heliyon	10.1016/j.heliyon.2023.e16258	2023
	Characterization of two bacterial tyrosinases from the halophilic bacterium Hahella sp. CCB MM4 relevant for phenolic compounds oxidation in wetlands.	de Almeida Santos G, Englund ANB, Dalleywater EL, Rohr AK.	FEBS Open Bio	10.1002/2211-5463.13906	2024
	Antimicrobial and cytotoxic activities of natural (Z)-13-docosenamide derived from Penicillium chrysogenum.	El-Gazzar N, Said L, Al-Otibi FO, AbdelGawwad MR, Rabie G.	Front Cell Infect Microbiol	10.3389/fcimb.2025.1529104	2025
	2,4-Dihydroxybenzoic Acid, a Novel SA Derivative, Controls Plant Immunity via UGT95B17-Mediated Glucosylation: A Case Study in Camellia Sinensis.	Lu M, Zhao Y, Feng Y, Tang X, Zhao W, Yu K, Pan Y, Wang Q, Cui J, Zhang M, Jin J, Wang J, Zhao M, Schwab W, Song C.	Adv Sci (Weinh)	10.1002/advs.202307051	2024
	Transcriptional Silencing of 35S rDNA in Tragopogon porrifolius Correlates with Cytosine Methylation in Sequence-Specific Manner.	Matyasek R, Kalfusova R, Kuderova A, Rehurkova K, Sochorova J, Kovarik A.	Int J Mol Sci	10.3390/ijms25147540	2024
	A chitin deacetylase PsCDA2 from Puccinia striiformis f. sp. tritici confers disease pathogenicity by suppressing chitin-triggered immunity in wheat.	Xiao M, Chen D, Liu S, Chen A, Fang A, Tian B, Yu Y, Bi C, Kang Z, Yang Y.	Mol Plant Pathol	10.1111/mpp.13381	2023
	Polymersomes for drug delivery: design, formation and characterization.	Lee JS, Feijen J.	J Control Release	10.1016/j.jconrel.2011.10.005	2012
	Psoriasis Is Associated With an Increased Risk of Hospitalization for Systemic Lupus Erythematosus: Analysis of the National Inpatient Sample Database.	Ojemolon PE, Unadike CE, Uwumiro F.	Cureus	10.7759/cureus.11771	2020
	Osteoarticular Involvement-Associated Biomarkers and Pathways in Psoriasis: The Shared Pathway With Ankylosing Spondylitis.	Zhang YP, Wang X, Jie LG, Qu Y, Zhu XT, Wu J, Yu QH.	Front Immunol	10.3389/fimmu.2022.836533	2022
	Microfluidic Determination of Distinct Membrane Transport Properties between Lung Adenocarcinoma Cells CL1-0 and CL1-5.	Chen CJ, Kao MH, Alvarado NAS, Ye YM, Tseng HY.	Biosensors (Basel)	10.3390/bios12040199	2022
	Millisecond flash lamp curing for porosity generation in thin films.	Attallah AG, Prucnal S, Buttering M, Hirschmann E, Koehler N, Schulz SE, Wagner A, Liedke MO.	Sci Rep	10.1038/s41598-023-34748-x	2023
Enzymology	The effect of 3-nitrooxypropanol, a potent methane inhibitor, on ruminal microbial gene expression profiles in dairy cows.	Pitta DW, Indugu N, Melgar A, Hristov A, Challa K, Vecchiarelli B, Hennessy M, Narayan K, Duval S, Kindermann M, Walker N.	Microbiome	10.1186/s40168-022-01341-9	2022
	Ovarian and spawning reference, size at first maturity and fecundity of Glossogobius giuris caught along Vietnamese Mekong Delta.	Dinh QM, Truong NT, Tran NS, Nguyen THD.	Saudi J Biol Sci	10.1016/j.sjbs.2021.10.030	2022
Phylogeny	Morphometric and molecular characterization of the series Guyanensis (Diptera, Psychodidae, Psychodopygus) from the Ecuadorian Amazon Basin with description of a new species.	Zapata S, Leon R, Sauvage F, Augot D, Trueba G, Cruaud C, Couloux A, Teran R, Depaquit J.	Infect Genet Evol	10.1016/j.meegid.2012.02.006	2012
	Evolution and emergence of primate-specific interferon regulatory factor 9.	Drury S, Claussen G, Zetterman A, Moriyama H, Moriyama EN, Zhang L.	J Med Virol	10.1002/jmv.28521	2023
	Spontaneous reports of primarily suspected herbal hepatotoxicity by Pelargonium sidoides: was causality adequately ascertained?	Teschke R, Frenzel C, Schulze J, Eickhoff A.	Regul Toxicol Pharmacol	10.1016/j.yrtph.2012.02.009	2012
	SARS-CoV-2 evolves to reduce but not abolish neutralizing action.	Zhang Y, Ndzouboukou JB, Lin X, Hou H, Wang F, Yuan L, Gan M, Yao Z, Fu H, Cao J, Fan X.	J Med Virol	10.1002/jmv.28207	2023
Metabolism	Platelet-Derived Microparticles (MPs) and Thrombin Generation Velocity in Deep Vein Thrombosis (DVT): Results of a Case-Control Study.	Signorelli SS, Oliveri Conti G, Fiore M, Cangiano F, Zuccarello P, Gaudio A, Ferrante M.	Vasc Health Risk Manag	10.2147/vhrm.s236286	2020
Metabolism	Arabinoxylan and Pectin Metabolism in Crohn's Disease Microbiota: An In Silico Study.	Sabater C, Calvete-Torre I, Ruiz L, Margolles A.	Int J Mol Sci	10.3390/ijms23137093	2022
	Porous Framework Materials for Bioimaging and Cancer Therapy.	Jin M, Zhao Y, Guan ZJ, Fang Y.	Molecules	10.3390/molecules28031360	2023
	Essential oil composition and total phenolic content in Cupressus arizonica G. in response to microbial inoculation under water stress conditions.	Aalipour H, Nikbakht A, Sabzalian MR.	Sci Rep	10.1038/s41598-023-28107-z	2023
	The combined tumour-based Fascin/Snail and stromal periostin reveals the effective prognosis prediction in colorectal cancer patients.	Jirapongwattana N, Thongchot S, Pongpaibul A, Trakarnsanga A, Quinn J, Thuwajit P, Thuwajit C, Edwards J.	PLoS One	10.1371/journal.pone.0304666	2024
Phylogeny	Novelties in Microthyriaceae (Microthyriales): Two New Asexual Genera with Three New Species from Freshwater Habitats in Guizhou Province, China.	Liu L, Yang J, Zhou S, Gu X, Gou J, Wei Q, Zhang M, Liu Z.	J Fungi (Basel)	10.3390/jof9020178	2023
	Adaptation of Pseudomonas aeruginosa to a pulsed light-induced stress.	Massier S, Rince A, Maillot O, Feuilloley MG, Orange N, Chevalier S.	J Appl Microbiol	10.1111/j.1365-2672.2011.05224.x	2012
	Microplastic contamination in canned fish sold in Türkiye.	Gundogdu S, Kosker AR.	PeerJ	10.7717/peerj.14627	2023
	Characterization of the Eukaryotic Virome of Mice from Different Sources.	Zhang C, Burch M, Wylie K, Herter B, Franklin CL, Ericsson AC.	Microorganisms	10.3390/microorganisms9102064	2021
Phylogeny	Young temperate tree species show different fine root acclimation capacity to growing season water availability.	Jaeger FC, Handa IT, Paquette A, Parker WC, Messier C.	Plant Soil	10.1007/s11104-023-06377-w	2024
Phenotype	Sex-specific trisomic Dyrk1a-related skeletal phenotypes during development in a Down syndrome model.	LaCombe JM, Sloan K, Thomas JR, Blackwell MP, Crawford I, Bishop F, Wallace JM, Roper RJ.	Dis Model Mech	10.1242/dmm.050914	2024
	Untargeted Metabolomics Analysis Revealed the Major Metabolites in the Seeds of four Polygonatum Species.	Qi J, Wei J, Liao D, Ding Z, Yao X, Sun P, Li X.	Molecules	10.3390/molecules27041445	2022
	The single-giant unilamellar vesicle method reveals lysenin-induced pore formation in lipid membranes containing sphingomyelin.	Alam JM, Kobayashi T, Yamazaki M.	Biochemistry	10.1021/bi300448g	2012
	Harnessing sulfate-reducing bacteria with plants growing to revitalize metal-tainted coal mine soils in Midwest China: metal sequestration performance, ecological networking interaction, and functional enzymatic prediction.	Yang Z, Wu Q, Liu Z, Qi X, Zhang Z, He M, Peng C, Zeng L, Wang J, Li F, Yang Z, Yin H.	Front Microbiol	10.3389/fmicb.2023.1306573	2023
	Influence of Prolonged Whole Egg Supplementation on Insulin-like Growth Factor 1 and Short-Chain Fatty Acids Product: Implications for Human Health and Gut Microbiota.	Suta S, Ophakas S, Manosan T, Honwichit O, Charoensiddhi S, Surawit A, Pongkunakorn T, Pumeiam S, Mongkolsucharitkul P, Pinsawas B, Sutheeworapong S, Puangsombat P, Khoomrung S, Mayurasakorn K.	Nutrients	10.3390/nu15224804	2023
	Structural architecture of TolQ-TolR inner membrane protein complex from opportunistic pathogen Acinetobacter baumannii.	Karimullina E, Guo Y, Khan HM, Emde T, Quade B, Di Leo R, Otwinowski Z, Tieleman DP, Borek D, Savchenko A.	Sci Adv	10.1126/sciadv.adq9845	2025
Biotechnology	Service discharges among US Army personnel with selected musculoskeletal and skin conditions: a retrospective cohort study.	Nelson DA, Kaplan RM, Weisman MH, Kurina LM.	BMJ Open	10.1136/bmjopen-2022-063371	2022
	Molecular Cytogenetic Identification of a Novel Wheat-Thinopyrum ponticum 1J^S (1B) Substitution Line Resistant to Powdery Mildew and Leaf Rust.	Li M, Wang Y, Liu X, Li X, Wang H, Bao Y.	Front Plant Sci	10.3389/fpls.2021.727734	2021
	Suppression of TCF4 promotes a ZC3H12A-mediated self-sustaining inflammatory feedback cycle involving IL-17RA/IL-17RE epidermal signaling.	Jiang Y, Gruszka D, Zeng C, Swindell WR, Gaskill C, Sorensen C, Brown W, Gangwar RS, Tsoi LC, Webster J, Sigurdardottir SL, Sarkar MK, Uppala R, Kidder A, Xing X, Plazyo O, Xing E, Billi AC, Maverakis E, Kahlenberg JM, Gudjonsson JE, Ward NL.	JCI Insight	10.1172/jci.insight.172764	2024
	Synthesis and Biological Activity of Myricetin Derivatives Containing Pyrazole Piperazine Amide.	Liu F, Cao X, Zhang T, Xing L, Sun Z, Zeng W, Xin H, Xue W.	Int J Mol Sci	10.3390/ijms241310442	2023
Metabolism	Pseudomonas putida NBRIC19 dihydrolipoamide succinyltransferase (SucB) gene controls degradation of toxic allelochemicals produced by Parthenium hysterophorus.	Mishra S, Mishra A, Chauhan PS, Mishra SK, Kumari M, Niranjan A, Nautiyal CS.	J Appl Microbiol	10.1111/j.1365-2672.2012.05256.x	2012
	New Amorphous Hydrogels with Proliferative Properties as Potential Tools in Wound Healing.	Preda P, Enciu AM, Adiaconita B, Mihalache I, Craciun G, Boldeiu A, Aricov L, Romanitan C, Stan D, Stan D, Marculescu C, Tanase C, Avram M.	Gels	10.3390/gels8100604	2022
	Genome-Wide Analysis of the AAAP Gene Family in Populus and Functional Analysis of PsAAAP21 in Root Growth and Amino Acid Transport.	Du J, Du C, Ge X, Wen S, Zhou X, Zhang L, Hu J.	Int J Mol Sci	10.3390/ijms24010624	2022
	Chemical Composition, Antioxidant and Antibacterial Activities and Acute Toxicity of Cedrus atlantica, Chenopodium ambrosioides and Eucalyptus camaldulensis Essential Oils.	Ez-Zriouli R, ElYacoubi H, Imtara H, Mesfioui A, ElHessni A, Al Kamaly O, Zuhair Alshawwa S, Nasr FA, Benziane Ouaritini Z, Rochdi A.	Molecules	10.3390/molecules28072974	2023
Pathogenicity	Possible ecological role of pseudopterosins G and P-U and seco-pseudopterosins J and K from the gorgonian Pseudopterogorgia elisabethae from Providencia Island (SW Caribbean) in regulating microbial surface communities.	Correa H, Zorro P, Arevalo-Ferro C, Puyana M, Duque C.	J Chem Ecol	10.1007/s10886-012-0182-y	2012
	Morphological description of Pintomyia (Pifanomyia) veintemillasi n. sp., a new sand fly species from the sub-Andean region of Bolivia.	Martinez E, Leon R, Mihalca AD, Dujardin JP, Le Pont F.	Parasit Vectors	10.1186/s13071-022-05433-1	2022
	Ultrastructure and morphometry of the egg of Psorophora albigenu Lutz, 1908 (Diptera: Culicidae).	Pacheco JB, Santos-Mallet JR, Guimaraes AE, Costa JM, Alencar J.	Micron	10.1016/j.micron.2011.10.014	2012
	Identification of Rare Variants in Right Ventricular Outflow Tract Obstruction Congenital Heart Disease by Whole-Exome Sequencing.	Zhou Y, Bai K, Wang Y, Meng Z, Zhou S, Jiang S, Wang H, Wang J, Yang M, Wang Q, Sun K, Chen S.	Front Cardiovasc Med	10.3389/fcvm.2021.811156	2021
	Feeding by the coccinellid Psyllobora rufosignata (Coleoptera: Coccinellidae) on the Asian grapevine leaf rust fungus Phakopsora euvitis (Basidiomycota: Uredinales)	Culik MP, Ventura JA, Almeida LMd, Correa GH.	Biocontrol science and technology.	10.1080/09583157.2010.538668	2011
Pathogenicity	Protective effects of Scoparia dulcis L. extract on high glucose-induced injury in human retinal pigment epithelial cells.	Lin HD, Lee YC, Chiang CY, Lin YJ, Shih CY, Tsai RK, Lin PY, Lin SZ, Ho TJ, Huang CY.	Front Nutr	10.3389/fnut.2023.1085248	2023
	Pestalotioid fungi: A rare agent of onychomycosis among agriculture workers.	Borgohain P, Barua P, Mahanta J, Ram Saikia L.	Curr Med Mycol	10.18502/cmm.6.2.2839	2020
	You are what you eat: a systematic review exploring the interaction between Brazilian sand flies and their vertebrate food sources.	Dutra-Rego F, Silva MSD, Isnard AP, Medeiros JF, Andrade Filho JD, Freire ML.	Mem Inst Oswaldo Cruz	10.1590/0074-02760240055	2024
	Improving the COI DNA barcoding library for Neotropical phlebotomine sand flies (Diptera: Psychodidae).	Posada-Lopez L, Rodrigues BL, Velez ID, Uribe S.	Parasit Vectors	10.1186/s13071-023-05807-z	2023
Pathogenicity	Characterization of antimicrobial resistance of Pseudomonas aeruginosa isolated from canine infections.	Lin D, Foley SL, Qi Y, Han J, Ji C, Li R, Wu C, Shen J, Wang Y.	J Appl Microbiol	10.1111/j.1365-2672.2012.05304.x	2012
	Antibacterial Properties of Peptide and Protein Fractions from Cornu aspersum Mucus	Velkova L, Dolashki A, Petrova V, Pisareva E, Kaynarov D, Kermedchiev M, Todorova M, Dolashka P.	Molecules		2024
	Reprogramming of flagellin receptor responses with surrogate ligands.	Lee DH, Lee HS, Choi MS, Parys K, Honda K, Kondoh Y, Lee JM, Edelbacher N, Heo G, Enugutti B, Osada H, Shirasu K, Belkhadir Y.	Nat Commun	10.1038/s41467-024-54271-5	2024
	Probiotic Zado® (Ruminococcus Flavefaciens) boosts hematology, immune, serum proteins, and growth profiles in Nile tilapia (Oreochromis niloticus).	Gayed MA, Elabd H, Tageldin M, Abbass A.	Fish Shellfish Immunol Rep	10.1016/j.fsirep.2021.100021	2021
	Engineered PsCas9 enables therapeutic genome editing in mouse liver with lipid nanoparticles.	Degtev D, Bravo J, Emmanouilidi A, Zdravkovic A, Choong OK, Liz Touza J, Selfjord N, Weisheit I, Francescatto M, Akcakaya P, Porritt M, Maresca M, Taylor D, Sienski G.	Nat Commun	10.1038/s41467-024-53418-8	2024
	A New Approach in Meat Bio-Preservation through the Incorporation of a Heteropolysaccharide Isolated from Lobularia maritima L.	Akacha BB, Najar B, Venturi F, Quartacci MF, Saad RB, Brini F, Mnif W, Kacaniova M, Ben Hsouna A.	Foods	10.3390/foods11233935	2022
	Frequency of prescribed burning in an upland oak forest determines soil and litter properties and alters the soil microbial community	Williams RJ, Hallgren SW, Wilson GWT.	For Ecol Manage	10.1016/j.foreco.2011.10.032	2012
	Prevention and risk assessment of cardiovascular events in a population of patients with psoriasis and psoriatic arthritis.	Olszewski R, Cwiklinska K, Maslinska M, Kwiatkowska B.	Reumatologia	10.5114/reum.2022.119043	2022
Proteome	Spatial organization and proteome of a dual-species cyanobacterial biofilm alter among N₂-fixing and non-fixing conditions.	Bozan M, Schmidt M, Musat N, Schmid A, Adrian L, Buhler K.	mSystems	10.1128/msystems.00302-23	2023
Metabolism	Characterization of rhamnolipid production by Burkholderia glumae.	Costa SG, Deziel E, Lepine F.	Lett Appl Microbiol	10.1111/j.1472-765x.2011.03154.x	2011
	Brindley's Glands Volatilome of the Predator Zelus renardii Interacting with Xylella Vectors.	Picciotti U, Valverde-Urrea M, Garganese F, Lopez-Moya F, Foubelo F, Porcelli F, Lopez-Llorca LV.	Insects	10.3390/insects14060520	2023
	Free Volume and Water Sorption by Cellulose Esters.	Chalykh AE, Bardyshev II, Petrova TF.	Polymers (Basel)	10.3390/polym13162644	2021
	Pseudomonas aeruginosa in a hydropathic facility: diversity, susceptibility and imipenem resistance mutation.	Pereira SG, Paixao J, Leitao R, Cardoso O.	Lett Appl Microbiol	10.1111/j.1472-765x.2011.03139.x	2011
Metabolism	In vitro modulation of oxidative burst via release of reactive oxygen species from immune cells by extracts of selected tropical medicinal herbs and food plants.	Mahomoodally F, Mesaik A, Choudhary MI, Subratty AH, Gurib-Fakim A.	Asian Pac J Trop Med	10.1016/s1995-7645(12)60075-3	2012
	Nanostructured Molecular-Network Arsenoselenides from the Border of a Glass-Forming Region: A Disproportionality Analysis Using Complementary Characterization Probes.	Shpotyuk O, Hyla M, Ingram A, Shpotyuk Y, Boyko V, Demchenko P, Wojnarowska-Nowak R, Lukacova Bujnakova Z, Balaz P.	Molecules	10.3390/molecules29163948	2024
Pathogenicity	Effects of ozone on membrane permeability and ultrastructure in Pseudomonas aeruginosa.	Zhang YQ, Wu QP, Zhang JM, Yang XH.	J Appl Microbiol	10.1111/j.1365-2672.2011.05113.x	2011
	Exploring Class I polyhydroxyalkanoate synthases with broad substrate specificity for polymerization of structurally diverse monomer units.	Sivashankari RM, Mierzati M, Miyahara Y, Mizuno S, Nomura CT, Taguchi S, Abe H, Tsuge T.	Front Bioeng Biotechnol	10.3389/fbioe.2023.1114946	2023
Metabolism	Enhanced zinc uptake by rice through phytosiderophore secretion: a modelling study.	Ptashnyk M, Roose T, Jones DL, Kirk GJ.	Plant Cell Environ	10.1111/j.1365-3040.2011.02401.x	2011
	Prevalence and characterization of Ice Nucleation Active (INA) bacteria from rainwater in Indonesia.	Khosasih V, Prasetyo N, Sudianto E, Waturangi DE.	BMC Microbiol	10.1186/s12866-022-02521-1	2022
	Initially purported hepatotoxicity by Pelargonium sidoides: the dilemma of pharmacovigilance and proposals for improvement.	Teschke R, Frenzel C, Wolff A, Herzog J, Glass X, Schulze J, Eickhoff A.	Ann Hepatol	10.1016/s1665-2681(19)31464-4	2012
	Antibody-Conjugated Polymersomes with Encapsulated Indocyanine Green J-Aggregates and High Near-Infrared Absorption for Molecular Photoacoustic Cancer Imaging.	Kawelah MR, Han S, Atila Dincer C, Jeon J, Brisola J, Hussain AF, Jeevarathinam AS, Bouchard R, Marras AE, Truskett TM, Sokolov KV, Johnston KP.	ACS Appl Mater Interfaces	10.1021/acsami.3c16584	2024
Pathogenicity	Multi-walled carbon nanotubes/epilson-polylysine nanocomposite with enhanced antibacterial activity.	Zhou J, Qi X.	Lett Appl Microbiol	10.1111/j.1472-765x.2010.02969.x	2011
	Preliminary Identification of Key Genes Controlling Peach Pollen Fertility Using Genome-Wide Association Study.	Huang Z, Shen F, Chen Y, Cao K, Wang L.	Plants (Basel)	10.3390/plants10020242	2021
	In-silico Studies Calculated a New Chitin Oligomer Binding Site Inside Vicilin: A Potent Antifungal and Insecticidal Agent.	Saeed A, Rafiq Z, Imran M, Saeed Q, Saeed MQ, Ali Z, Iqbal RK, Hussain S, Khaliq B, Mehmood S, Akrem A.	Dose Response	10.1177/15593258221108280	2022
	Role of Elevated Ozone on Development and Metabolite Contents of Lemongrass [Cymbopogon flexuosus (Steud.) (Wats.)].	Madheshiya P, Gupta GS, Sahoo A, Tiwari S.	Metabolites	10.3390/metabo13050597	2023
	Phages of Pseudomonas aeruginosa: response to environmental factors and in vitro ability to inhibit bacterial growth and biofilm formation.	Knezevic P, Obreht D, Curcin S, Petrusic M, Aleksic V, Kostanjsek R, Petrovic O.	J Appl Microbiol	10.1111/j.1365-2672.2011.05043.x	2011
	Simultaneous Enantiodivergent Synthesis of Diverse Lactones and Lactams via Sequential One-Pot Enzymatic Kinetic Resolution-Ring-Closing Metathesis Reactions.	Brodzka A, Koszelewski D, Ostaszewski R.	Molecules	10.3390/molecules27227696	2022
	Hybrid bagging and boosting with SHAP based feature selection for enhanced predictive modeling in intrusion detection systems.	Ahmed U, Jiangbin Z, Almogren A, Sadiq M, Rehman AU, Sadiq MT, Choi J.	Sci Rep	10.1038/s41598-024-81151-1	2024
	Enhancing the backstepping control approach competencies for wind turbine systems using a dual star induction generator.	Milles A, Merabet E, Benbouhenni H, Colak I, Bensedira N, Debdouche N, Aggoune MS, Boukhalfa G.	Sci Rep	10.1038/s41598-025-97771-0	2025
	Genome Sequence Analysis of Two Pseudomonas putida Strains to Identify a 17-Hydroxylase Putatively Involved in Sparteine Degradation.	Detheridge AP, Griffith GW, Hopper DJ.	Curr Microbiol	10.1007/s00284-018-1573-2	2018
	Scanning electron microscopy of antennal sensible of Anoplistes halodendri halodendri and Anoplistes halodendri ephippium (Coleoptera: Cerambycidae).	Liu XH, Luo YQ, Cao CJ, Zong SX.	Microsc Res Tech	10.1002/jemt.21065	2012
Enzymology	Rumen methanogenic genotypes differ in abundance according to host residual feed intake phenotype and diet type.	Carberry CA, Waters SM, Kenny DA, Creevey CJ.	Appl Environ Microbiol	10.1128/aem.03131-13	2014
Genetics	Leaf Size Development Differences and Comparative Trancriptome Analyses of Two Poplar Genotypes.	Zhang L, Du J, Ge X, Cao D, Hu J.	Genes (Basel)	10.3390/genes12111775	2021
Metabolism	Production of the antifungal compounds phenazine and pyrrolnitrin from Pseudomonas chlororaphis O6 is differentially regulated by glucose.	Park JY, Oh SA, Anderson AJ, Neiswender J, Kim JC, Kim YC.	Lett Appl Microbiol	10.1111/j.1472-765x.2011.03036.x	2011
	Exploring ascomycete diversity in Yunnan, China I: resolving ambiguous taxa in Phaeothecoidiellaceae and investigating conservation implications of fungi.	Hongsanan S, Phookamsak R, Bhat DJ, Wanasinghe DN, Promputtha I, Suwannarach N, Sandamali D, Lumyong S, Xu J, Xie N.	Front Cell Infect Microbiol	10.3389/fcimb.2023.1252387	2023
Metabolism	Selective inhibition of Erwinia amylovora by the herbicidally active germination-arrest factor (GAF) produced by Pseudomonas bacteria.	Halgren A, Azevedo M, Mills D, Armstrong D, Thimmaiah M, McPhail K, Banowetz G.	J Appl Microbiol	10.1111/j.1365-2672.2011.05098.x	2011
	Structure of the red-shifted Fittonia albivenis photosystem I.	Li X, Huang G, Zhu L, Hao C, Sui SF, Qin X.	Nat Commun	10.1038/s41467-024-50655-9	2024
Metabolism	Rapid and flexible biochemical assays for evaluating 4'-phosphopantetheinyl transferase activity.	Owen JG, Copp JN, Ackerley DF.	Biochem J	10.1042/bj20110321	2011
	Solving the problem of power ripples for a multi-rotor wind turbine system using fractional-order third-order sliding mode algorithms.	Benbouhenni H, Yahdou A, Djilali AB, Bizon N, Colak I, Elbarbary ZMS, Parayangat M.	Sci Rep	10.1038/s41598-025-89636-3	2025
Pathogenicity	In vitro activity of tigecycline and comparators against gram-negative bacteria isolated from a tertiary hospital in Alexandria, Egypt.	Mohamed NM, Youssef AA.	Microb Drug Resist	10.1089/mdr.2010.0195	2011
	Significant others' perspectives on experiences of meal-oriented support and diet counselling for adults with intellectual disabilities who live in supported housing.	Adolfsson P, Umb Carlsson O, Ek P.	Int J Dev Disabil	10.1080/20473869.2022.2095860	2024
	The influence of postscreening follow-up time and participant characteristics on estimates of overdiagnosis from lung cancer screening trials.	Li M, Zhang L, Charvat H, Callister ME, Sasieni P, Christodoulou E, Kaaks R, Johansson M, Carvalho AL, Vaccarella S, Robbins HA.	Int J Cancer	10.1002/ijc.34167	2022
	IL-33/13 Axis and IL-4/31 Axis Play Distinct Roles in Inflammatory Process and Itch in Psoriasis and Atopic Dermatitis.	Bodoor K, Al-Qarqaz F, Heis LA, Alfaqih MA, Oweis AO, Almomani R, Obeidat MA.	Clin Cosmet Investig Dermatol	10.2147/ccid.s257647	2020
	Deciphering Aphanomyces euteiches-pea-biocontrol bacterium interactions through untargeted metabolomics.	Hossain Z, Zhao S, Luo X, Liu K, Li L, Hubbard M.	Sci Rep	10.1038/s41598-024-52949-w	2024
	Antimicrobially Active Semen Extenders Allow the Reduction of Antibiotic Use in Pig Insemination.	Luther AM, Nguyen TQ, Verspohl J, Waberski D.	Antibiotics (Basel)	10.3390/antibiotics10111319	2021
	Power regulation of variable speed multi rotor wind systems using fuzzy cascaded control.	Benbouhenni H, Colak I, Bizon N, Mosaad MI, Tella TG.	Sci Rep	10.1038/s41598-024-67194-4	2024
	New colours for old in the blue-cheese fungus Penicillium roqueforti.	Cleere MM, Novodvorska M, Geib E, Whittaker J, Dalton H, Salih N, Hewitt S, Kokolski M, Brock M, Dyer PS.	NPJ Sci Food	10.1038/s41538-023-00244-9	2024
Metabolism	Antioxidant and antimelanogenic behaviors of Paeonia suffruticosa.	Ding HY, Chou TH, Lin RJ, Chan LP, Wang GH, Liang CH.	Plant Foods Hum Nutr	10.1007/s11130-011-0235-3	2011
	Functional traits and phylogenetic analysis of top-soil inhabiting rhizobacteria associated with tea rhizospheres in North Bengal, India.	Pandey AK, Dinesh K, Yadav S, Sharma HK, Babu A.	Curr Res Microb Sci	10.1016/j.crmicr.2023.100200	2023
	Novel endophytic pestalotioid species associated with Itea in Thailand.	Monkai J, Phookamsak R, Bhat DJ, Ei TSZ, Xu J, Lumyong S.	Front Cell Infect Microbiol	10.3389/fcimb.2025.1532712	2025
	Biodegradable polymersomes as carriers and release systems for paclitaxel using Oregon Green® 488 labeled paclitaxel as a model compound.	Lee JS, Feijen J.	J Control Release	10.1016/j.jconrel.2011.10.025	2012
	Chlorophyll a Synthesis in Rhodobacter sphaeroides by Chlorophyll Synthase of Nicotiana tabacum.	Kim J, Lee JK, Kim EJ.	Biology (Basel)	10.3390/biology12040573	2023
	Characterization of synthetic antigen binding fragments targeting Toc75 for the isolation of TOC in A. thaliana and P. sativum.	Srinivasan K, Erramilli SK, Chakravarthy S, Gonzalez A, Kossiakoff A, Noinaj N.	Structure	10.1016/j.str.2023.03.002	2023
Metabolism	Regulation of Fructose 1,6-Bisphosphatase in Procyclic Form Trypanosoma brucei.	Wilkinson C, Morris MT.	Pathogens	10.3390/pathogens10050617	2021
	RecJ3/4-aRNase J form a Ubl-associated nuclease complex functioning in survival against DNA damage in Haloferax volcanii.	Jia H, Dantuluri S, Margulies S, Smith V, Lever R, Allers T, Koh J, Chen S, Maupin-Furlow JA.	mBio	10.1128/mbio.00852-23	2023
	Old age and other factors associated with salivary microbiome variation.	Schwartz JL, Pena N, Kawar N, Zhang A, Callahan N, Robles SJ, Griebel A, Adami GR.	BMC Oral Health	10.1186/s12903-021-01828-1	2021
	Species Diversity, Habitat Distribution, and Blood Meal Analysis of Haematophagous Dipterans Collected by CDC-UV Light Traps in the Dominican Republic.	Gonzalez MA, Bravo-Barriga D, Rodriguez-Sosa MA, Rueda J, Frontera E, Alarcon-Elbal PM.	Pathogens	10.3390/pathogens11070714	2022
	Metabolome profiling dissects the oat (Avena sativa L.) innate immune response to Pseudomonas syringae pathovars.	Pretorius CJ, Steenkamp PA, Dubery IA.	PLoS One	10.1371/journal.pone.0311226	2025
	Asexually propagated Agave tequilana var. azul exhibits variation in genetic markers and defence responses to Fusarium solani.	Chavez-Sanchez C, Mancilla-Margalli NA, Montero-Cortes MI, Gutierrez-Miceli FA, Briceno-Felix GA, Simpson Williamson JK, Avila-Miranda ME.	AoB Plants	10.1093/aobpla/plac027	2022
Pathogenicity	Effects of Ganoderma lucidum polysaccharides on IEC-6 cell proliferation, migration and morphology of differentiation benefiting intestinal epithelium healing in vitro.	Sun LX, Chen LH, Lin ZB, Qin Y, Zhang JQ, Yang J, Ma J, Ye T, Li WD.	J Pharm Pharmacol	10.1111/j.2042-7158.2011.01367.x	2011
Enzymology	Volatile biomarkers of Pseudomonas aeruginosa in cystic fibrosis and noncystic fibrosis bronchiectasis.	Savelev SU, Perry JD, Bourke SJ, Jary H, Taylor R, Fisher AJ, Corris PA, Petrie M, De Soyza A.	Lett Appl Microbiol	10.1111/j.1472-765x.2011.03049.x	2011
Transcriptome	Integrated Analysis of miRNA-mRNA Expression in Mink Lung Epithelial Cells Infected With Canine Distemper Virus.	Chen Q, Tong M, Sun N, Yang Y, Cheng Y, Yi L, Wang G, Cao Z, Zhao Q, Cheng S.	Front Vet Sci	10.3389/fvets.2022.897740	2022
	Effects of Salinity and Abscisic Acid on Lipid Transfer Protein Accumulation, Suberin Deposition and Hydraulic Conductance in Pea Roots.	Akhiyarova GR, Ivanov RS, Ivanov II, Finkina EI, Melnikova DN, Bogdanov IV, Nuzhnaya T, Ovchinnikova TV, Veselov DS, Kudoyarova GR.	Membranes (Basel)	10.3390/membranes11100762	2021
	Trends in psoriatic arthritis epidemiology in Poland.	Tlustochowicz M, Wierzba W, Marczak M, Tlustochowicz W, Sliwczynski A, Raciborski F, Kwiatkowska B, Brzozowska M, Jacyna A, Kisiel B.	Rheumatol Int	10.1007/s00296-020-04734-x	2021
	Reproduction ecology of an emerging fishery resource, the amphibious mudskipper Periophthalmus chrysospilos, in the Mekong Delta.	Dinh QM, Nguyen THD, Lam TTH, Truong NT, Nguyen TTK, Jaafar Z.	Ecol Evol	10.1002/ece3.8507	2022
	Copper Binding and Oligomerization Studies of the Metal Resistance Determinant CrdA from Helicobacter pylori.	Kekez I, Faletar M, Kekez M, Cendron L, Wright M, Zanotti G, Matkovic-Calogovic D.	Molecules	10.3390/molecules27113387	2022
	Real-Time Collection of Conidia Released from Living Single Colonies of Podosphaera aphanis on Strawberry Leaves under Natural Conditions with Electrostatic Techniques.	Ayabe S, Kimura Y, Umei N, Takikawa Y, Kakutani K, Matsuda Y, Nonomura T.	Plants (Basel)	10.3390/plants11243453	2022
	Little noticed, but very important: The role of breeding sites formed by bamboos in maintaining the diversity of mosquitoes (Diptera: Culicidae) in the Atlantic Forest biome.	Muller GA, de Mello CF, Bueno AS, de Alcantara Azevedo WT, Alencar J.	PLoS One	10.1371/journal.pone.0273774	2022
	Intein-mediated temperature control for complete biosynthesis of sanguinarine and its halogenated derivatives in yeast.	Gou Y, Li D, Zhao M, Li M, Zhang J, Zhou Y, Xiao F, Liu G, Ding H, Sun C, Ye C, Dong C, Gao J, Gao D, Bao Z, Huang L, Xu Z, Lian J.	Nat Commun	10.1038/s41467-024-49554-w	2024
	Biostimulant Activity of Silicate Compounds and Antagonistic Bacteria on Physiological Growth Enhancement and Resistance of Banana to Fusarium Wilt Disease.	Zakaria MAT, Sakimin SZ, Ismail MR, Ahmad K, Kasim S, Baghdadi A.	Plants (Basel)	10.3390/plants12051124	2023
Enzymology	Vector Competence of Peruvian Mosquitoes for Two Orthobunyaviruses Isolated From Mosquitoes Captured in Peru.	Turell MJ, Dohm DJ, Fernandez R, Klein TA.	J Med Entomol	10.1093/jme/tjaa252	2021
	Electrically Triggered Quercetin Release from Polycaprolactone/Bismuth Ferrite Microfibrous Scaffold for Skeletal Muscle Tissue.	Ayran M, Karabulut H, Deniz KI, Akcanli GC, Ulag S, Croitoru AM, Tihauan BM, Sahin A, Ficai D, Gunduz O, Ficai A.	Pharmaceutics	10.3390/pharmaceutics15030920	2023
Metabolism	Emerging functions within the enzyme families of plant alkaloid biosynthesis.	Muro-Villanueva F, Nett RS.	Phytochem Rev	10.1007/s11101-023-09901-z	2023
Pathogenicity	Evaluation of a new formulation of adulticide, DUET, against West Nile virus vector mosquitoes.	Qualls WA, Xue RD.	J Am Mosq Control Assoc	10.2987/10-5993.1	2010
	Value-Added Utilization of Citrus Peels in Improving Functional Properties and Probiotic Viability of Acidophilus-bifidus-thermophilus (ABT)-Type Synbiotic Yoghurt during Cold Storage.	Fathy HM, Abd El-Maksoud AA, Cheng W, Elshaghabee FMF.	Foods	10.3390/foods11172677	2022
Enzymology	Chitosan as a Promising Support of a CDH Activity Preservation System for Biomedical and Industrial Applications.	Sulej J, Osinska-Jaroszuk M, Jaszek M, Olszewska A, Belcarz A, Piatek-Golda W.	Int J Mol Sci	10.3390/ijms24054535	2023
	Loading-induced bone formation is mediated by Wnt1 induction in osteoblast-lineage cells.	Lawson LY, Migotsky N, Chermside-Scabbo CJ, Shuster JT, Joeng KS, Civitelli R, Lee B, Silva MJ.	FASEB J	10.1096/fj.202200591r	2022
Metabolism	Piper sarmentosum prevents glucocorticoid-induced osteoporotic bone resorption by increasing 11beta-hydroxysteroid dehydrogenase type 1 activity.	Suhana MR, Farihah HS, Faizah O, Nazrun SA, Norazlina M, Norliza M, Nirwana SI.	Clin Ter		2011
	Sphingolipid long chain base phosphates can regulate apoptotic-like programmed cell death in plants.	Alden KP, Dhondt-Cordelier S, McDonald KL, Reape TJ, Ng CK, McCabe PF, Leaver CJ.	Biochem Biophys Res Commun	10.1016/j.bbrc.2011.06.028	2011
Metabolism	Influence of endothelial nitric oxide synthase polymorphisms in psoriasis risk.	Coto-Segura P, Coto E, Mas-Vidal A, Morales B, Alvarez V, Diaz M, Alonso B, Santos-Juanes J.	Arch Dermatol Res	10.1007/s00403-011-1129-9	2011
Transcriptome	The dark septate endophyte Phialocephala sphaeroides suppresses conifer pathogen transcripts and promotes root growth of Norway spruce.	Wang K, Wen Z, Asiegbu FO.	Tree Physiol	10.1093/treephys/tpac089	2022
	Novel Probiotic Candidates in Artisanal Feta-Type Kefalonian Cheese: Unveiling a Still-Undisclosed Biodiversity.	Lappa IK, Natsia A, Alimpoumpa D, Stylianopoulou E, Prapa I, Tegopoulos K, Pavlatou C, Skavdis G, Papadaki A, Kopsahelis N.	Probiotics Antimicrob Proteins	10.1007/s12602-024-10239-x	2025
Enzymology	Norcoclaurine synthase is a member of the pathogenesis-related 10/Bet v1 protein family.	Lee EJ, Facchini P.	Plant Cell	10.1105/tpc.110.077958	2010
	The polysaccharide fraction of Propionibacterium acnes modulates the development of experimental focal segmental glomerulosclerosis.	Reis VO, Silva JC, Souza GT, Semedo P, Buscariollo B, Pereira RL, Cenedeze MA, Pacheco-Silva A, Longo-Maugeri IM, Camara NO, Keller AC.	Immunobiology	10.1016/j.imbio.2011.12.003	2012
Genetics	Horizontal Gene Transfer of a key Translation Factor and its Role in Polyproline Proteome Evolution.	Brewer TE, Wagner A.	Mol Biol Evol	10.1093/molbev/msae180	2024
	Mandelonitrile lyase MDL2-mediated regulation of seed amygdalin and oil accumulation of Prunus Sibirica.	Chen F, Zang J, Wang Z, Wang J, Shi L, Xiu Y, Lin S, Lin W.	BMC Plant Biol	10.1186/s12870-024-05300-4	2024
	Genomic Analysis of two NDM-1 Providencia stuartii Strains Recovered from a Single Patient.	Hoard A, Montana S, Moriano A, Fernandez JS, Traglia GM, Quiroga C, Franchi A, Cohen E, Corigliano C, Almuzara M, Ramirez MS.	Curr Microbiol	10.1007/s00284-020-02242-6	2020
	Development of a SCAR Marker-Based Diagnostic Method for the Detection of the Citrus Target Spot Pathogen Pseudofabraea citricarpa.	Yang Y, Hu J, Chen F, Ding D, Zhou C.	Biomed Res Int	10.1155/2018/7128903	2018
	Chemoenzymatic Synthesis of Tenofovir.	Zdun B, Reiter T, Kroutil W, Borowiecki P.	J Org Chem	10.1021/acs.joc.3c01005	2023
Enzymology	A Reduced F₄₂₀-Dependent Nitrite Reductase in an Anaerobic Methanotrophic Archaeon.	Heryakusuma C, Susanti D, Yu H, Li Z, Purwantini E, Hettich RL, Orphan VJ, Mukhopadhyay B.	J Bacteriol	10.1128/jb.00078-22	2022
Transcriptome	Inhibitory effect of carvacrol against Alternaria alternata causing goji fruit rot by disrupting the integrity and composition of cell wall.	Zhao L, Wang J, Zhang H, Wang P, Wang C, Zhou Y, Li H, Yu S, Wu R.	Front Microbiol	10.3389/fmicb.2023.1139749	2023
	Complexation and evolution of cis-prenyltransferase homologues in Cinnamomum kanehirae deduced from kinetic and functional characterizations.	Liu JJ, Liang PH.	Protein Sci	10.1002/pro.4828	2023
Phylogeny	Molecular characterization of mosquitoes (Diptera: Culicidae) from the Colombian rainforest.	Munoz-Gamba AS, Laiton-Donato K, Perdomo-Balaguera E, Castro LR, Usme-Ciro JA, Parra-Henao G.	Rev Inst Med Trop Sao Paulo	10.1590/s1678-9946202163024	2021
	Identification of Q-Markers from Hedan Tablet by employing "spider-web" mode and taking compounds' hepatotoxicity into account.	Wang D, Ding J, Feng X, Chai X, Yang J, Liu C, Zeng Y, Zhou W, Wang Y.	Chin Herb Med	10.1016/j.chmed.2021.08.007	2022
	Effect of Treating Acid Sulfate Soils with Phosphate Solubilizing Bacteria on Germination and Growth of Tomato (Lycopersicon esculentum L.).	Kim JH, Kim SJ, Nam IH.	Int J Environ Res Public Health	10.3390/ijerph18178919	2021
	Synthetic selenium nanoparticles as co-adjuvant improved immune responses against methicillin-resistant Staphylococcus aureus.	Ranjbariyan A, Haghighat S, Yazdi MH, Arbabi Bidgoli S.	World J Microbiol Biotechnol	10.1007/s11274-022-03455-6	2022
Pathogenicity	Multiple drug resistance and strength of attachment to surfaces in Pseudomonas aeruginosa isolates.	Haddadin RN, Saleh SA, Mahmoud RA, Shehabi AA.	Lett Appl Microbiol	10.1111/j.1472-765x.2010.02857.x	2010
	Cross-genera legume SSR markers for analysis of genetic diversity in Lens species	Reddy MRK, Rathour R, Kumar N, Katoch P, Sharma TR.	Plant Breed		2010
	Two new mosquito species and six new provincial records in Argentina.	Visintin AM, Laurito M, Stein M, Ramirez P, Molina G, Lorenzo PR, Almiron WR.	J Am Mosq Control Assoc	10.2987/09-5955.1	2010
	The comparative pathology of enterocolitis caused by Clostridium perfringens type C, Clostridioides difficile, Paeniclostridium sordellii, Salmonella enterica subspecies enterica serovar Typhimurium, and nonsteroidal anti-inflammatory drugs in horses.	Mendonca FS, Navarro MA, Uzal FA.	J Vet Diagn Invest	10.1177/10406387211041091	2022
	Multispecies Bacterial Bio-Input: Tracking and Plant-Growth-Promoting Effect on Lettuce var. sagess.	Vio SA, Galar ML, Gortari MC, Balatti P, Garbi M, Lodeiro AR, Luna MF.	Plants (Basel)	10.3390/plants12040736	2023
Phylogeny	Investigation and Rapid Discrimination of Food-Related Bacteria under Stress Treatments Using IR Microspectroscopy.	Klein D, Breuch R, Reinmuller J, Engelhard C, Kaul P.	Foods	10.3390/foods10081850	2021
	Experimental analysis of genetic algorithm-enhanced PI controller for power optimization in multi-rotor variable-speed wind turbine systems.	Benbouhenni H, Bizon N, Yessef M, Elbarbary ZMS, Colak I, Bossoufi B, Al Ayidh A.	Sci Rep	10.1038/s41598-024-81281-6	2025
	Solanum lycopersicum heme-binding protein 2 as a potent antimicrobial weapon against plant pathogens.	Farvardin A, Llorens E, Liu-Xu L, Sanchez-Gimenez L, Wong A, Biosca EG, Pedra JM, Falomir E, Camanes G, Scalschi L, Vicedo B.	Sci Rep	10.1038/s41598-023-47236-z	2023
	PDMAEMA/Polyester Miktopolymers: Synthesis via In-Out Approach, Physicochemical Characterization and Enzymatic Degradation.	Kupczak M, Mielanczyk A, Neugebauer D.	Materials (Basel)	10.3390/ma14051277	2021
	Morphopathogenesis of Adult Acquired Cholesteatoma.	Dambergs K, Sumeraga G, Pilmane M.	Medicina (Kaunas)	10.3390/medicina59020306	2023
Metabolism	Alginate beads as a storage, delivery and containment system for genetically modified PCB degrader and PCB biosensor derivatives of Pseudomonas fluorescens F113.	Power B, Liu X, Germaine KJ, Ryan D, Brazil D, Dowling DN.	J Appl Microbiol	10.1111/j.1365-2672.2011.04993.x	2011
Metabolism	Genome of turbot rhabdovirus exhibits unusual non-coding regions and an additional ORF that could be expressed in fish cell.	Zhu RL, Lei XY, Ke F, Yuan XP, Zhang QY.	Virus Res	10.1016/j.virusres.2010.12.006	2011
	Visualization of Topological Pharmacophore Space with Graph Edit Distance.	Nakano H, Miyao T.	ACS Omega	10.1021/acsomega.2c00173	2022
Enzymology	Structure modeling and inhibitor prediction ofNADP oxidoreductase enzyme from Methanobrevibacter smithii.	Sharma A, Chaudhary PP, Sirohi SK, Saxena J.	Bioinformation	10.6026/97320630006015	2011
	Impact of prebiotics and postbiotics in the management of constipation: Analysis of their differentiated modulation of intestinal microbiota.	Culqui Levano DR, Rodriguez Sanz P, Palacios Sanchez R, Saldana Miranda MY, Santa Cruz Lopez CY, Mateus Rodriguez JA.	Clin Nutr ESPEN	10.1016/j.clnesp.2025.08.003	2025
Pathogenicity	Gut microbiota alterations and their association with tumorigenic pathways in colorectal cancer: insights from a pooled analysis of 109 microbiome datasets.	Haque S, Bantun F, Jalal NA, Faidah H, Babalghith AO, Alobaidy MA, Aldairi AF, Ahmad F.	Gut Pathog	10.1186/s13099-025-00712-5	2025
	In vitro incubation reveals the human overall gut microbiota composition is resilient to changes in methanogenesis.	Wang T, Smidt H, Zoetendal EG.	Benef Microbes	10.1163/18762891-bja00059	2025
	Small intestinal bacterial overgrowth and intestinal methanogen overgrowth in gastrointestinal malignancies.	Mechlinska A, Frackiewicz K, Gladys-Cieszynska K, Buczek D, Dziadziuszko R.	Contemp Oncol (Pozn)	10.5114/wo.2025.148643	2025
	Biogenesis of DNA-carrying extracellular vesicles by the dominant human gut methanogenic archaeon.	Baquero DP, Borrel G, Gazi A, Martin-Gallausiaux C, Cvirkaite-Krupovic V, Commere PH, Pende N, Tachon S, Sartori-Rupp A, Douche T, Matondo M, Gribaldo S, Krupovic M.	Nat Commun	10.1038/s41467-025-60272-9	2025
	Effect, Tolerability, and Safety of Exclusive Palatable Elemental Diet in Patients With Intestinal Microbial Overgrowth.	Rezaie A, Chang BW, de Freitas Germano J, Leite G, Mathur R, Houser K, Hosseini A, Brimberry D, Rashid M, Mehravar S, Villanueva-Millan MJ, Sanchez M, Weitsman S, Fajardo CM, Rivera IG, Joo L, Chan Y, Barlow GM, Pimentel M.	Clin Gastroenterol Hepatol	10.1016/j.cgh.2025.03.002	2025
	Surfactin's impact on gut microbiota and intestinal tumor cells.	Wei X, Wang H, Liu S, Bao K, Ke S, Zhou Z.	Int J Biol Macromol	10.1016/j.ijbiomac.2024.138607	2025
	Draft genome sequence of Methanobrevibacter smithii strain B181, isolated from a fecal sample.	Plugge CM, Berkhout MD, Galani A, Wang T, Belzer C.	Microbiol Resour Announc	10.1128/mra.00320-24	2024
	Methane, Bacteria, Fungi, and Fermentation: Pathophysiology, Diagnosis and Treatment Strategies for Small Intestinal Bacterial Overgrowth, Intestinal Methanogen Overgrowth and Small Intestinal Fungal Overgrowth.	Wawrzenczyk A, Czarnowska M, Darwish S, Cwirko-Godycka A, Lis K, Szota M, Treichel P, Wojtkiewicz A, Napiorkowska-Baran K.	Curr Issues Mol Biol	10.3390/cimb47090713	2025
	The Characteristics of Gut Microbiota and Its Relation with Diet in Postmenopausal Osteoporosis.	Chen T, Meng F, Wang N, Hao Y, Fu L.	Calcif Tissue Int	10.1007/s00223-024-01260-x	2024
Genetics	Exploration of fecal microbiota in newly diagnosed patients with inflammatory bowel disease using shotgun metagenomics.	Orejudo M, Gomez MJ, Riestra S, Rivero M, Gutierrez A, Rodriguez-Lago I, Fernandez-Salazar L, Ceballos D, Benitez JM, Aguas M, Baston-Rey I, Bermejo F, Casanova MJ, Lorente-Poyatos RH, Ber Y, Ginard D, Esteve M, de Francisco R, Garcia MJ, Frances R, Rodriguez A, Alcaide Suarez N, Guerra Del Rio E, Soto P, Nos P, Barreiro-de Acosta M, Guerra I, Hervias Cruz D, Dominguez Cajal M, Royo V, Aceituno M, Aldars-Garcia L, Garre A, Ramirez C, Soleto I, Schuppe-Koistinen I, Engstrand L, Baldan-Martin M, Sanchez-Cabo F, Gisbert JP, Chaparro M.	Front Cell Infect Microbiol	10.3389/fcimb.2025.1595884	2025
	Tumor Tissue Microbiota in Colorectal Cancer: PCR Profile of FFPE Blocks in Associations with Metastatic Status.	Shakhpazyan NK, Mikhaleva LM, Sadykhov NK, Midiber KY, Buchaka AS, Gioeva ZV, Mikhalev AI, Bedzhanyan AL.	Cells	10.3390/cells14191508	2025
	Hydrogen Sulfide and Methane on Breath Test Correlate with Human Small Intestinal Hydrogen Sulfide Producers and Methanogens.	Villanueva-Millan MJ, Leite G, Mathur R, Rezaie A, Fajardo CM, de Freitas Germano J, Morales W, Sanchez M, Rivera I, Parodi G, Weitsman S, Rashid M, Hosseini A, Brimberry D, Barlow GM, Pimentel M.	Dig Dis Sci	10.1007/s10620-025-09156-y	2025
	Structural and functional insights from the sequences and complex domain architecture of adhesin-like proteins from Methanobrevibacter smithii and Methanosphaera stadtmanae.	Gupta AB, Seedorf H.	Front Microbiol	10.3389/fmicb.2024.1463715	2024
	The effect of Methylococcus capsulatus in mono- or co-culture with Methanobrevibacter smithii or with mixed rumen fluid on bacterial growth and methane gas production.	Min BR, Ismael H, Chaudhary S, Hilaire M, Kanyi V, Wang H, Abdo H, Puchala R.	J Anim Sci	10.1093/jas/skaf383	2025
	Culturing clinical Methanobrevibacter smithii using GG medium in a minimal anaerobe atmosphere.	Pilliol V, Guindo CO, Terrer E, Aboudharam G, Drancourt M, Grine G.	J Microbiol Methods	10.1016/j.mimet.2023.106704	2023
	Association of Gut Microbiota With Performance Level Among Iranian Professional and Semi-Professional Runners: A Cross-Sectional Study.	Nazari H, Meibodi AE, Bassami M, Olfatifar M, Yadegar A.	Health Sci Rep	10.1002/hsr2.71319	2025
	The Human Archaeome: Commensals, Opportunists, or Emerging Pathogens?	Ruden DM.	Pathogens	10.3390/pathogens14111111	2025
	Polyphasic molecular approach to the characterization of methanogens in the saliva of Tunisian adults.	Bouzid F, Gtif I, Charfeddine S, Abid L, Kharrat N.	Anaerobe	10.1016/j.anaerobe.2024.102820	2024
	Helicobacter pylori infection and gut microbiota in adolescents: Is there a relation?	Amrousy DE, Ashry HE, Maher S, Abdelhai D, Hassan S.	J Biosci	10.1007/s12038-023-00387-7	2024
	Functional prediction of proteins from the human gut archaeome.	Novikova PV, Bhanu Busi S, Probst AJ, May P, Wilmes P.	ISME Commun	10.1093/ismeco/ycad014	2024
	Limosilactobacillus fermentum, Lactococcus lactis and Thomasclavelia ramosa are enriched and Methanobrevibacter smithii is depleted in patients with non-alcoholic steatohepatitis.	Mbaye B, Wasfy RM, Alou MT, Borentain P, Andrieu C, Caputo A, Raoult D, Gerolami R, Million M.	Microb Pathog	10.1016/j.micpath.2023.106160	2023
Genetics	Dietary Protein-Induced Changes in Archaeal Compositional Dynamics, Methanogenic Pathways, and Antimicrobial Resistance Profiles in Lactating Sheep.	Mushtaq M, Ni X, Khan M, Zhao X, Yang H, Danzeng B, Ali S, Zafar MH, Quan G.	Microorganisms	10.3390/microorganisms13071560	2025
	A Spotlight on Archaea in Humans, Livestock and Poultry: A Review.	Salahi A, Abd El-Ghany WA.	Vet Med Sci	10.1002/vms3.70263	2025
Genetics	Age-related dynamics of predominant methanogenic archaea in the human gut microbiome.	Mohammadzadeh R, Mahnert A, Shinde T, Kumpitsch C, Weinberger V, Schmidt H, Moissl-Eichinger C.	BMC Microbiol	10.1186/s12866-025-03921-9	2025
	Utilization of machine learning to predict antibiotic resistant event outcomes in acute myeloid leukemia patients undergoing induction chemotherapy.	McMahon S, Franklin S, Galloway-Pena J.	Front Cell Infect Microbiol	10.3389/fcimb.2025.1629422	2025
	Severe Cognitive Decline in Long-term Care Is Related to Gut Microbiome Production of Metabolites Involved in Neurotransmission, Immunomodulation, and Autophagy.	Shoubridge AP, Carpenter L, Flynn E, Papanicolas LE, Collins J, Gordon D, Lynn DJ, Whitehead C, Leong LEX, Cations M, De Souza DP, Narayana VK, Choo JM, Wesselingh SL, Crotty M, Inacio MC, Ivey K, Taylor SL, Rogers GB.	J Gerontol A Biol Sci Med Sci	10.1093/gerona/glaf053	2025
Pathogenicity	Gut health predictive indices linking gut microbiota dysbiosis with healthy state, mild gut discomfort, and inflammatory bowel disease phenotypes using gut microbiome profiling.	Phan J, Jain S, Nijkamp JF, Sasidharan R, Agarwal A, Bird JK, Spooren A, Wittwer Schegg J, Ver Loren van Themaat E, Mak TN.	Microbiol Spectr	10.1128/spectrum.00271-25	2025
	The Archaeome's Role in Colorectal Cancer: Unveiling the DPANN Group and Investigating Archaeal Functional Signatures.	Mathlouthi NEH, Belguith I, Yengui M, Oumarou Hama H, Lagier JC, Ammar Keskes L, Grine G, Gdoura R.	Microorganisms	10.3390/microorganisms11112742	2023
	Perspective: on the future of fecal microbiota transplantation.	Larsen OFA, Brummer RJM.	Front Microbiol	10.3389/fmicb.2024.1449133	2024
	Impact of exposure to per- and polyfluoroalkyl substances on fecal microbiota composition in mother-infant dyads.	Lamichhane S, Harkonen T, Vatanen T, Hyotylainen T, Knip M, Oresic M.	Environ Int	10.1016/j.envint.2023.107965	2023
	Synergetic anaerobic digestion of food waste for enhanced production of biogas and value-added products: strategies, challenges, and techno-economic analysis.	Sharma P, Parakh SK, Tsui TH, Bano A, Singh SP, Singh VP, Lam SS, Nadda AK, Tong YW.	Crit Rev Biotechnol	10.1080/07388551.2023.2241112	2024
	Gut Microbiome Changes in Anorexia Nervosa: A Comprehensive Review.	Zhao W, Kodancha P, Das S.	Pathophysiology	10.3390/pathophysiology31010006	2024
	The human gut microbiome and its metabolic pathway dynamics before and during HIV antiretroviral therapy.	Dolo O, Coulibaly F, Somboro AM, Sun S, Diarra M, Maiga A, Bore S, Fofana DB, Marcelin A-G, Diakite B, Kassogue Y, Holl JL, Calvez V, Traore CB, Murphy R, Fodor AA, Maiga M, Maiga AI.	Microbiol Spectr	10.1128/spectrum.02205-24	2025
	Use of a small molecule microarray screen to identify inhibitors of the catalytic RNA subunit of Methanobrevibacter smithii RNase P.	Sidharthan V, Sibley CD, Dunne-Dombrink K, Yang M, Zahurancik WJ, Balaratnam S, Wilburn DB, Schneekloth JS, Gopalan V.	Nucleic Acids Res	10.1093/nar/gkae1190	2025
	A Preliminary Study of Gut Microbiota in Airline Pilots: Comparison With Construction Workers and Fitness Instructors.	Minoretti P, Sigurta C, Fachinetti A, Cerone E, Rotta F, Emanuele E.	Cureus	10.7759/cureus.39841	2023
	Probiotic Engraftment of Akkermansia muciniphila in an In Vitro Synthetic Microbial Community.	Berkhout MD, de Ram C, Boeren S, Plugge CM, Belzer C.	Microb Ecol	10.1007/s00248-025-02605-1	2025
Genetics	Good and bad dispositions between archaea and bacteria in the human gut: New insights from metagenomic survey and co-occurrence analysis.	Candeliere F, Sola L, Raimondi S, Rossi M, Amaretti A.	Synth Syst Biotechnol	10.1016/j.synbio.2023.12.007	2024
Phylogeny	Comparison of Gut Microbial Structure and Function Changes in Sichuan-Tibetan Black Pigs at Different Growth Stages Based on Metagenomic Analysis.	Jiang L, Qing Y, Huang K, Huang H, Li C, Mei Q, Wu Q.	Curr Issues Mol Biol	10.3390/cimb47100866	2025
Pathogenicity	Obesity-related microbial dysbiosis as a potential modulator of tumour progression.	Mokhashi O, Chakladar J, Li WT, Karin M, Uzelac M, Ongkeko WM.	Access Microbiol	10.1099/acmi.0.001055.v4	2025
	Fecal Microbiota Transplantation Induces Sustained Gut Microbiome Changes in Pediatric Ulcerative Colitis: A Combined Randomized and Open-Label Study.	Le J, Hakimjavadi H, Parsana R, Chamala S, Michail S.	Gastro Hep Adv	10.1016/j.gastha.2025.100741	2025
	Hydrogen Sulfide Producers Drive a Diarrhea-Like Phenotype and a Methane Producer Drives a Constipation-Like Phenotype in Animal Models.	Villanueva-Millan MJ, Leite G, Morales W, Sanchez M, Parodi G, Weitsman S, Celly S, Cohrs D, Do H, Barlow GM, Mathur R, Rezaie A, Pimentel M.	Dig Dis Sci	10.1007/s10620-023-08197-5	2024
	Reevaluation of the gastrointestinal methanogenic archaeome in multiple sclerosis and its association with treatment.	Woh PY, Chen Y, Kumpitsch C, Mohammadzadeh R, Schmidt L, Moissl-Eichinger C.	Microbiol Spectr	10.1128/spectrum.02183-24	2025
	The Athlete Gut Microbiome: A Narrative Review of Multi-Omics Insights and Next-Generation Probiotic Strategies.	Li Z, Li Y, Wang Y, Chen J, Liu Y.	Nutrients	10.3390/nu17203260	2025
	In vitro interactions between Blautia hydrogenotrophica, Desulfovibrio piger and Methanobrevibacter smithii under hydrogenotrophic conditions.	Wang T, Leibrock N, Plugge CM, Smidt H, Zoetendal EG.	Gut Microbes	10.1080/19490976.2023.2261784	2023
	An urgent need for longitudinal microbiome profiling coupled with machine learning interventions.	Dey P, Choubey S.	Front Microbiol	10.3389/fmicb.2024.1487841	2024
Phylogeny	Detection of methanogens in peri-appendicular abscesses: Report of four cases.	Djemai K, Gouriet F, Sielezneff I, Mege D, Drancourt M, Grine G.	Anaerobe	10.1016/j.anaerobe.2021.102470	2021
	Rapid identification of clinically interesting methanogens using an improved MALDI-TOF-MS assay.	Guindo CO, Amir L, Couderc C, Drancourt M, Grine G.	Access Microbiol	10.1099/acmi.0.000372	2022
	Methanobrevibacter smithii Archaemia in Febrile Patients With Bacteremia, Including Those With Endocarditis.	Drancourt M, Djemai K, Gouriet F, Grine G, Loukil A, Bedotto M, Levasseur A, Lepidi H, Bou-Khalil J, Khelaifia S, Raoult D.	Clin Infect Dis	10.1093/cid/ciaa998	2021
	A mathematical model of Bacteroides thetaiotaomicron, Methanobrevibacter smithii, and Eubacterium rectale interactions in the human gut.	Adrian MA, Ayati BP, Mangalam AK.	Sci Rep	10.1038/s41598-023-48524-4	2023
	Gut microbiota in irritable bowel syndrome: a narrative review of mechanisms and microbiome-based therapies.	Li X, Yuan Q, Huang H, Wang L.	Front Immunol	10.3389/fimmu.2025.1695321	2025
	Consistent signatures in the human gut microbiome of longevous populations.	Chen S, Zhang Z, Liu S, Chen T, Lu Z, Zhao W, Mou X, Liu S.	Gut Microbes	10.1080/19490976.2024.2393756	2024
Metabolism	Unraveling the Pathophysiology of Irritable Bowel Syndrome: Mechanisms and Insights.	Aggeletopoulou I, Papantoniou K, Pastras P, Triantos C.	Int J Mol Sci	10.3390/ijms262110598	2025
Genetics	Targeted isolation of Methanobrevibacter strains from fecal samples expands the cultivated human archaeome.	Duller S, Vrbancic S, Szydlowski L, Mahnert A, Blohs M, Predl M, Kumpitsch C, Zrim V, Hogenauer C, Kosciolek T, Schmitz RA, Eberhard A, Dragovan M, Schmidberger L, Zurabischvili T, Weinberger V, Moser AM, Kolb D, Pernitsch D, Mohammadzadeh R, Kuhnast T, Rattei T, Moissl-Eichinger C.	Nat Commun	10.1038/s41467-024-52037-7	2024
	Archaea from the gut microbiota of humans: Could be linked to chronic diseases?	Mafra D, Ribeiro M, Fonseca L, Regis B, Cardozo LFMF, Fragoso Dos Santos H, Emiliano de Jesus H, Schultz J, Shiels PG, Stenvinkel P, Rosado A.	Anaerobe	10.1016/j.anaerobe.2022.102629	2022
	Biosynthesis of bromoform by Curvularia fungi provides a natural pathway to mitigate enteric methane emissions from ruminants.	Loan T, Karpe A, Babaei S, Denman S, Chen C, Joust M, Lam K, Hussain D, Vibhakaran SP, Callaghan M, Chaudhury A, Paco K, Tomkins N, Yang T, Payne S, Ayliffe M, Luo M.	Biotechnol Rep (Amst)	10.1016/j.btre.2025.e00876	2025
Genetics	Virome and metagenomic analysis reveal the distinct distribution of microbiota in human fetal gut during gestation.	Liu X, He G, Lan Y, Guo W, Liu X, Li J, Liu A, He M, Liu X, Fan Z, Zhang Y.	Front Immunol	10.3389/fimmu.2022.1079294	2022
Phenotype	Host-specific microbiome-rumination interactions shape methane-yield phenotypes in dairy cattle.	Castaneda A, Indugu N, Lenker K, Narayan K, Rassler S, Bender J, Baker L, Purandare O, Chai D, Zhao X, Pitta D.	mSphere	10.1128/msphere.00090-25	2025
	Longitudinal multi-omics analyses of the gut-liver axis reveals metabolic dysregulation in hepatitis C infection and cirrhosis.	Ali RO, Quinn GM, Umarova R, Haddad JA, Zhang GY, Townsend EC, Scheuing L, Hill KL, Gewirtz M, Rampertaap S, Rosenzweig SD, Remaley AT, Han JM, Periwal V, Cai H, Walter PJ, Koh C, Levy EB, Kleiner DE, Etzion O, Heller T.	Nat Microbiol	10.1038/s41564-022-01273-y	2023
	Characteristics of putative keystones in the healthy adult human gut microbiota as determined by correlation network analysis.	Bauchinger F, Seki D, Berry D.	Front Microbiol	10.3389/fmicb.2024.1454634	2024
Genetics	Integrative metagenomic analysis reveals distinct gut microbial signatures related to obesity.	Hu X, Yu C, He Y, Zhu S, Wang S, Xu Z, You S, Jiao Y, Liu SL, Bao H.	BMC Microbiol	10.1186/s12866-024-03278-5	2024
	Perioperative Multi-Kingdom Gut Microbiota Alters in Coronary Artery Bypass Grafting.	Fu Z, Jia Y, Zhao J, Guo Y, Xie B, An K, Yuan W, Chen Y, Zhong J, Tong Z, Liu X, Su P.	Biomedicines	10.3390/biomedicines13020475	2025
	Metagenomic Comparison of Gut Microbes of Lemur catta in Captive and Semi-Free-Range Environments.	Xu C, Guo X, Li L.	Animals (Basel)	10.3390/ani15101442	2025
	Isolation of a Methanobrevibacter gottschalkii strain from an Eastern Gray Kangaroo.	Volmer JG, Evans PN, Soo RM, Hugenholtz P, Tyson GW, Morrison M.	Front Microbiol	10.3389/fmicb.2024.1483533	2024
Genetics	Metagenome-assembled microbial genomes from Parkinson's disease fecal samples.	Duru IC, Lecomte A, Shishido TK, Laine P, Suppula J, Paulin L, Scheperjans F, Pereira PAB, Auvinen P.	Sci Rep	10.1038/s41598-024-69742-4	2024
	Causal association between Parkinson disease, gut microbiota, and constipation: A Mendelian study.	Zheng J, Xu B, Gao L, Wang W.	Medicine (Baltimore)	10.1097/md.0000000000045552	2025
Metabolism	Effects of exercise intensity on gut microbiome composition and function in people with type 2 diabetes.	Torquati L, Gajanand T, Cox ER, Willis CRG, Zaugg J, Keating SE, Coombes JS.	Eur J Sport Sci	10.1080/17461391.2022.2035436	2023
	[Intestinal microbiote of athletes].	Bragina TV, Elizarova EV, Sheveleva SA.	Vopr Pitan	10.33029/0042-8833-2021-90-4-36-52	2021
	A Single Fasting Exhaled Methane Level Correlates With Fecal Methanogen Load, Clinical Symptoms and Accurately Detects Intestinal Methanogen Overgrowth.	Takakura W, Pimentel M, Rao S, Villanueva-Millan MJ, Chang C, Morales W, Sanchez M, Torosyan J, Rashid M, Hosseini A, Wang J, Leite G, Kowalewski E, Mathur R, Rezaie A.	Am J Gastroenterol	10.14309/ajg.0000000000001607	2022
	Mucin-driven ecological interactions in an in vitro synthetic community of human gut microbes.	Berkhout MD, Ioannou A, de Ram C, Boeren S, Plugge CM, Belzer C.	Glycobiology	10.1093/glycob/cwae085	2024
	Correlating the Gut Microbiota and Circulating Hormones with Acne Lesion Counts and Skin Biophysical Features.	Sivamani RK, Maloh J, Nong Y.	Microorganisms	10.3390/microorganisms11082049	2023
	Dissecting Causal Relationships Between Gut Microbiota, Immunocyte Phenotype, and Migraine: A Mendelian Randomization Study.	Lai Y, Liu Y, Chen J, Cao Y, Zhang X, Li L, Zhou P, Sun P, Zhou J.	Brain Behav	10.1002/brb3.70693	2025
	Integrated multi-omics highlights alterations of gut microbiome functions in prodromal and idiopathic Parkinson's disease.	Villette R, Ortis Sunyer J, Novikova PV, Aho VTE, Petrov VA, Hickl O, Busi SB, De Rudder C, Kunath BJ, Heintz-Buschart A, Trezzi JP, Halder R, Jager C, Lebrun LA, Daujeumont A, Schade S, Janzen A, Jehmlich N, von Bergen M, Laczny CC, May P, Trenkwalder C, Oertel W, Mollenhauer B, Wilmes P.	Microbiome	10.1186/s40168-025-02227-2	2025
	Harnessing gut-derived bioactives and AI diagnostics for the next generation of type 2 diabetes solutions.	Tseyslyer Y, Malyi V, Saifullina M, Tsyryuk O, Shvets Y, Penchuk Y, Kovalchuk I, Kovalchuk O, Korotkyi O, Bulda V, Lazarieva O.	Front Endocrinol (Lausanne)	10.3389/fendo.2025.1699954	2025
	The Role of Gut Microbiota in Pediatric Obesity and Metabolic Disorders: Insights from a Comprehensive Review.	Koller AM, Sasaran MO, Marginean CO.	Nutrients	10.3390/nu17111883	2025
	[Functional Exams in the gastroenterology - new developments and tips for the common practice].	Barbone G, Jochum C.	Dtsch Med Wochenschr	10.1055/a-1156-0780	2021
	Research Progress on the Correlation of Atopic Dermatitis with Gut Microbiota.	Mao Q, Wang X, Cai H, Yang J, Zhang Y, Min W, Qian Q, Zeng Y.	Clin Cosmet Investig Dermatol	10.2147/ccid.s442551	2024
	Growth Characteristics of Sheep-Derived Bacteroides fragilis and Preliminary Research on Effects in Mice and Lambs.	Cheng C, Du J, Tao J, Cheng D.	Microorganisms	10.3390/microorganisms13010087	2025
Genetics	Early antimicrobial regimen shapes gut microbiota and health trajectories in pigs: a longitudinal study from weaning to finishing.	Correa F, Luise D, Palladino G, Estelle J, Turroni S, Scicchitano D, Babbi G, Rampelli S, Candela M, Martelli PL, Stefanelli C, Perez-Calvo E, Trevisi P.	Anim Microbiome	10.1186/s42523-025-00477-x	2025
Metabolism	Acidic pH enhances butyrate production from pectin by faecal microbiota.	Raba G, Adamberg S, Adamberg K.	FEMS Microbiol Lett	10.1093/femsle/fnab042	2021
	Assessment of Human Health Risks in Tropical Environmental Waters with Microbial Source Tracking Markers.	Goh SG, Liang L, Gin KYH.	Water Res	10.1016/j.watres.2021.117748	2021
	Does gut microbiota dysbiosis impact the metabolic alterations of hydrogen sulfide and lanthionine in patients with chronic kidney disease?	Garcia-Martinez Y, Alexandrova E, Iebba V, Ferravante C, Spinelli M, Franci G, Amoresano A, Weisz A, Trepiccione F, Borriello M, Ingrosso D, Perna AF.	BMC Microbiol	10.1186/s12866-024-03590-0	2024
Phylogeny	Archaeome structure and function of the intestinal tract in healthy and H1N1 infected swine.	Meene A, Gierse L, Schwaiger T, Karte C, Schroder C, Hoper D, Wang H, Gross V, Wunsche C, Mucke P, Kreikemeyer B, Beer M, Becher D, Mettenleiter TC, Riedel K, Urich T.	Front Microbiol	10.3389/fmicb.2023.1250140	2023
	Identification of SIBO Subtypes along with Nutritional Status and Diet as Key Elements of SIBO Therapy	Wielgosz-Grochowska J, Domanski N, Drywien M.	Int J Mol Sci		2024
	Modeling the weaning diet of piglets with fermented feed material: effects on growth performance and health parameters.	Badaras S, Starkute V, Mockus E, Ruzauskas M, Klupsaite D, Mozuriene E, Dailidaviciene J, Dauksiene A, Vadopalas L, Metzler-Zebeli BU, Bartkiene E.	Front Vet Sci	10.3389/fvets.2025.1616209	2025
	Multi-kingdom microbial changes and their associations with the clinical characteristics in schizophrenia patients.	Zhu B, Liang L, Chen S, Li H, Huang Y, Wang W, Zhang H, Zhou J, Xiong D, Li X, Li J, Ning Y, Shi X, Wu F, Wu K.	Transl Psychiatry	10.1038/s41398-025-03449-6	2025
	Gut microbiota, behavior, and nutrition after type 1 diabetes diagnosis: A longitudinal study for supporting data in the metabolic control.	Traversi D, Scaioli G, Rabbone I, Carletto G, Ferro A, Franchitti E, Carrera D, Savastio S, Cadario F, Siliquini R, Cerutti F, Durazzo M.	Front Nutr	10.3389/fnut.2022.968068	2022
	Small Intestinal Bacterial Overgrowth in Patients With Severe Alcoholic Hepatitis: Frequency and Predictors.	Vaithiyam V, Sachdeva S, Aneesh P, Teja Reddy R, Chittem R, Ahuja A, Mehta K, Dalal A, Kumar A.	Cureus	10.7759/cureus.85516	2025
Phylogeny	Human Milk Archaea Associated with Neonatal Gut Colonization and Its Co-Occurrence with Bacteria.	Salas-Lopez M, Velez-Ixta JM, Rojas-Guerrero DL, Pina-Escobedo A, Hernandez-Hernandez JM, Rangel-Calvillo MN, Perez-Cruz C, Corona-Cervantes K, Juarez-Castelan CJ, Garcia-Mena J.	Microorganisms	10.3390/microorganisms13010085	2025
	Impact of Oral Administration of Lactobacillus reuteri LMG-P 27481 on Human Gut Microbiota Diversity and Function: A Pilot Study.	Ojetti V, Petruzziello C, Migneco A, Candelli M, Saviano A.	Biomedicines	10.3390/biomedicines13112840	2025
Pathogenicity	Metabolic modeling links gut microbiota to metabolic markers of Parkinson's disease.	Hensen T, Thiele I.	Gut Microbes	10.1080/19490976.2025.2554195	2025
	[Methanobrevibacter smithii in irritable bowel syndrome: a clinical and molecular study].	Vlasova AV, Isakov VA, Pilipenko VI, Sheveleva SA, Markova YM, Polyanina AS, Maev IV.	Ter Arkh	10.26442/00403660.2019.08.000383	2019
	Influence of menstrual cycle and oral contraception on taxonomic composition and gas production in the gut microbiome.	Terrazas F, Kelley ST, DeMasi T, Giltvedt K, Tsang M, Nannini K, Kern M, Hooshmand S.	J Med Microbiol	10.1099/jmm.0.001987	2025
	Exploring the Link Between the Gut Microbiota and Epigenetic Factors in Anorexia Nervosa.	Korten NM, Thelen AC, Voelz C, Beyer C, Seitz J, Trinh S, Blischke L.	Brain Behav	10.1002/brb3.70733	2025
Enzymology	Detection of Methanobrevibacter smithii in vaginal samples collected from women diagnosed with bacterial vaginosis.	Grine G, Drouet H, Fenollar F, Bretelle F, Raoult D, Drancourt M.	Eur J Clin Microbiol Infect Dis	10.1007/s10096-019-03592-1	2019
	High-fat diet may increase the risk of insulin resistance by inducing dysbiosis.	Abbasi E, Khodadadi I.	Metabol Open	10.1016/j.metop.2025.100381	2025
	Perioperative Oral Immunonutrient Regulation of Intestinal Barrier and Gut Microbiota in Patients with Gastric Cancer, a Randomized Controlled Clinical Trial.	Zheng Z, Liu G, Wang Y, Li J, Zhang C, Zhang Y, Ye X, Kang W.	Biomedicines	10.3390/biomedicines13092163	2025
Metabolism	Isolation and culture of Methanobrevibacter smithii by co-culture with hydrogen-producing bacteria on agar plates.	Traore SI, Khelaifia S, Armstrong N, Lagier JC, Raoult D.	Clin Microbiol Infect	10.1016/j.cmi.2019.04.008	2019
	The impact of physical activity interventions on body composition and quality of life in adolescents with anorexia nervosa: a meta-analysis of randomized controlled trials.	Fangquan D, Yin J, Haijun K, Yebiao F, Hanqiao Z, Junting Z.	BMC Pediatr	10.1186/s12887-025-06077-7	2025
	The dynamics of the female microbiome: unveiling abrupt changes of microbial domains across body sites from prepartum to postpartum phases.	Neumann CJ, Pausan M-R, Haid V, Weiss E-C, Kolovetsiou-Kreiner V, Amtmann B, Winkler P, Mahnert A, Jantscher-Krenn E, Moissl-Eichinger C.	Microbiol Spectr	10.1128/spectrum.00147-24	2024
	Review: Methanogens and methane production in the digestive systems of nonruminant farm animals.	Misiukiewicz A, Gao M, Filipiak W, Cieslak A, Patra AK, Szumacher-Strabel M.	Animal	10.1016/j.animal.2020.100060	2021
	Archaea methanogens are associated with cognitive performance through the shaping of gut microbiota, butyrate and histidine metabolism.	Fumagalli A, Castells-Nobau A, Trivedi D, Garre-Olmo J, Puig J, Ramos R, Ramio-Torrenta L, Perez-Brocal V, Moya A, Swann J, Martin-Garcia E, Maldonado R, Fernandez-Real JM, Mayneris-Perxachs J.	Gut Microbes	10.1080/19490976.2025.2455506	2025
	Distribution of Genetic Determinants Associated with CRISPR-Cas Systems and Resistance to Antibiotics in the Genomes of Archaea and Bacteria.	Antequera-Zambrano L, Parra-Sanchez A, Gonzalez-Paz L, Fernandez E, Martinez-Navarrete G.	Microorganisms	10.3390/microorganisms13061321	2025
	The discovery of Candidatus Nanopusillus phoceensis sheds light on the diversity of the microbiota nanoarchaea.	Hassani Y, Aboudharam G, Drancourt M, Grine G.	iScience	10.1016/j.isci.2024.109488	2024
	Lower gastrointestinal tract dysbiosis in persistent critical illness: a systematic review.	Tang E, Doan N, Evans T, Litton E.	J Med Microbiol	10.1099/jmm.0.001888	2024
	Small Intestinal Bacterial Overgrowth Is a Predictor of Overt Hepatic Encephalopathy in Patients with Liver Cirrhosis.	Sakamaki A, Yokoyama K, Yamazaki H, Wakabayashi T, Kojima Y, Tominaga K, Tsuchiya A, Kamimura K, Yokoyama J, Terai S.	J Clin Med	10.3390/jcm14051491	2025
	Profile of the gut microbiota of adults with obesity: a systematic review.	Crovesy L, Masterson D, Rosado EL.	Eur J Clin Nutr	10.1038/s41430-020-0607-6	2020
	Methanobrevibacter massiliense and Pyramidobacter piscolens Co-Culture Illustrates Transkingdom Symbiosis.	Pilliol V, Beye M, Terlier L, Balmelle J, Kacel I, Lan R, Aboudharam G, Grine G, Terrer E.	Microorganisms	10.3390/microorganisms12010215	2024
	Exploring the use of exhaled breath profiling for non-invasive monitoring of cognitive functioning in children: a pilot study.	Meurs J, Henderson B, van Dun C, Batitsta GL, Sakkoula E, van Diepen JA, Gross G, Aarts E, Cristescu SM.	Metabolomics	10.1007/s11306-025-02277-5	2025
	Gut Microbiota and Metabolic Alterations Associated with Heart Failure and Coronary Artery Disease.	Yafarova AA, Dementeva EV, Zlobovskaya OA, Sheptulina AF, Lopatukhina EV, Timofeev YS, Glazunova EV, Lyundup AV, Doludin YV, Kiselev AR, Shipulin GA, Makarov VV, Drapkina OM, Yudin SM.	Int J Mol Sci	10.3390/ijms252011295	2024
Metabolism	Composition and functional profiles of gut microbiota reflect the treatment stage, severity, and etiology of acute pancreatitis.	Wang Z, Guo M, Li J, Jiang C, Yang S, Zheng S, Li M, Ai X, Xu X, Zhang W, He X, Wang Y, Chen Y.	Microbiol Spectr	10.1128/spectrum.00829-23	2023
	Influence of fermented milk permeate containing antimicrobial Lactobacillus and galactooligosaccharides on growth performance and health parameters in neonatal piglets.	Badaras S, Starkute V, Mockus E, Ruzauskas M, Klupsaite D, Mozuriene E, Dailidaviciene J, Dauksiene A, Vadopalas L, Bartkiene E.	Front Vet Sci	10.3389/fvets.2025.1501117	2025
Genetics	Metagenomic Analysis of Surface Waters and Wastewater in the Colombian Andean Highlands: Implications for Health and Disease.	Urrea V, Paez-Triana L, Velasquez-Ortiz N, Camargo M, Patino LH, Vega L, Ballesteros N, Hidalgo-Troya A, Galeano LA, Ramirez JD, Munoz M.	Curr Microbiol	10.1007/s00284-024-04019-7	2025
	Comprehensive gut microbiota composition and microbial interactions among the three age groups.	Ma J, Yang X, He J.	PLoS One	10.1371/journal.pone.0305583	2024
	Prevalence and abundance of traditional and host-associated fecal indicators in urban estuarine sediments: Potential implications for estuarine water quality monitoring.	Ahmed W, Payyappat S, Cassidy M, Harrison N, Marinoni O, Besley C.	Water Res	10.1016/j.watres.2020.116109	2020
	The gut dysbiosis of mothers with gestational diabetes and its correlation with diet.	Sohrabi R, Mousavi SN, Shapouri R, Nasiri Z, Heidarzadeh S, Shokri R.	Sci Rep	10.1038/s41598-025-03767-1	2025
Genetics	Microbial-enrichment method enables high-throughput metagenomic characterization from host-rich samples.	Wu-Woods NJ, Barlow JT, Trigodet F, Shaw DG, Romano AE, Jabri B, Eren AM, Ismagilov RF.	Nat Methods	10.1038/s41592-023-02025-4	2023
	The inclusion of insect meal from Hermetia illucens larvae in the diet of laying hens (Hy-line Brown) affects the caecal diversity of methanogenic archaea.	Mahayri TM, Mrazek J, Bovera F, Piccolo G, Murgia GA, Moniello G, Fliegerova KO.	Poult Sci	10.1016/j.psj.2025.105037	2025
	Positive Outcomes of Supplementation with Lecithin-Based Delivery Formulation of Curcuma longa and Boswellia serrata in IBS Subjects with Small Bowel Dysbiosis.	Giacosa A, Barrile GC, Perna S, Rondanelli M.	Life (Basel)	10.3390/life14111410	2024
Genetics	Correlation between gut microbiota and pancreatitis: a bidirectional Mendelian randomization.	Nan B, Jin L, Wang T, Long C, Zhao H, Wang C, Zhang W.	Eur J Gastroenterol Hepatol	10.1097/meg.0000000000002861	2025
	Detection capacity of small intestine bacterial or methanogen overgrowth by lactose and fructose breath testing in the adult population.	Laserna Mendieta EJ, Martin Dominguez V, Perez Lucendo I, Granero Cremades I, Ferreiros Martinez R, Alvarez Male T, Sanz De Benito MA, Santander C.	Adv Lab Med	10.1515/almed-2024-0115	2024
	Early-onset Colon Cancer Shows a Distinct Intestinal Microbiome and a Host-Microbe Interaction.	Adnan D, Trinh JQ, Sharma D, Alsayid M, Bishehsari F.	Cancer Prev Res (Phila)	10.1158/1940-6207.capr-23-0091	2024
	Clinical evidence of the role of Methanobrevibacter smithii in severe acute malnutrition.	Camara A, Konate S, Tidjani Alou M, Kodio A, Togo AH, Cortaredona S, Henrissat B, Thera MA, Doumbo OK, Raoult D, Million M.	Sci Rep	10.1038/s41598-021-84641-8	2021
	Differences in the Fecal Metabolome of Autoimmune Pancreatitis Patients.	Dovhalyuk V, Yang F, Nikolic S, Vujasinovic M, Lohr JM, Globisch D.	United European Gastroenterol J	10.1002/ueg2.70025	2025
Metabolism	The dynamics of the gut microbiota in prediabetes during a four-year follow-up among European patients-an IMI-DIRECT prospective study.	Lyu L, Fan Y, Vogt JK, Clos-Garcia M, Bonnefond A, Pedersen HK, Dutta A, Koivula R, Sharma S, Allin KH, Brorsson C, Cederberg H, Chabanova E, De Masi F, Dermitzakis E, Elders PJ, Blom MT, Hollander M, Eriksen R, Forgie I, Frost G, Giordano GN, Grallert H, Haid M, Hansen TH, Jablonka B, Kokkola T, Mahajan A, Mari A, McDonald TJ, Musholt PB, Pavo I, Prehn C, Ridderstrale M, Ruetten H, Hart LM', Schwenk JM, Stankevic E, Thomsen HS, Vangipurapu J, Vestergaard H, Vinuela A, Walker M, Hansen T, Linneberg A, Nielsen HB, Brunak S, McCarthy MI, Froguel P, Adamski J, Franks PW, Laakso M, Beulens JWJ, Pearson E, Pedersen O.	Genome Med	10.1186/s13073-025-01508-7	2025
	Investigating the relationship between Helicobacter pylori and intestinal Clostridioides difficile infection: evidence from a cross-sectional study.	Yin L, Tu H, Zhu Y, Qian J, Yang Y, Wei C, Ding C, Zhang B.	BMC Gastroenterol	10.1186/s12876-025-04227-w	2025
	Designing synthetic microbial communities for enhanced anaerobic waste treatment.	Jourdain L, Gu W.	Appl Environ Microbiol	10.1128/aem.00404-25	2025
Metabolism	Culture of salivary methanogens assisted by chemically produced hydrogen.	Guindo CO, Terrer E, Chabriere E, Aboudharam G, Drancourt M, Grine G.	Anaerobe	10.1016/j.anaerobe.2019.102128	2020
	Emerging microbiome-directed therapies in inflammatory bowel disease: beyond diet modification and FMT.	Quiroga-Centeno AC, Atanasova K, Ebert MP, Thomann AK, Reindl W.	Semin Immunopathol	10.1007/s00281-025-01066-5	2025
Metabolism	Systematic identification of secondary bile acid production genes in global microbiome.	Yang Y, Gao W, Zhu R, Tao L, Chen W, Zhu X, Shen M, Xu T, Zhao T, Zhang X, Zhu L, Jiao N.	mSystems	10.1128/msystems.00817-24	2025
Genetics	Towards unraveling antimicrobial resistance dynamics: a longitudinal exploration of rectal swab metagenomes.	Boutin S, Kading N, Belheouane M, Merker M, Rupp J, Nurjadi D.	BMC Microbiol	10.1186/s12866-025-03874-z	2025
	Possible role of the gut microbiota in the pathogenesis of anorexia nervosa.	Sudo N.	Biopsychosoc Med	10.1186/s13030-021-00228-9	2021
	Capacidad de detección de sobrecrecimiento bacteriano o metanogénico intestinal de los test de aliento para intolerancia a lactosa y fructosa en población adulta.	Laserna Mendieta EJ, Martin Dominguez V, Perez Lucendo I, Granero Cremades I, Ferreiros Martinez R, Alvarez Male T, Sanz De Benito MA, Santander C.	Adv Lab Med	10.1515/almed-2024-0040	2024
	Fermented foods affect the seasonal stability of gut bacteria in an Indian rural population.	Jeyaram K, Lahti L, Tims S, Heilig HGHJ, van Gelder AH, de Vos WM, Smidt H, Zoetendal EG.	Nat Commun	10.1038/s41467-025-56014-6	2025
	Alterations of the human gut Methanobrevibacter smithii as a biomarker for inflammatory bowel diseases.	Ghavami SB, Rostami E, Sephay AA, Shahrokh S, Balaii H, Aghdaei HA, Zali MR.	Microb Pathog	10.1016/j.micpath.2018.01.029	2018
	Definition of a microbial signature as a predictor of endoscopic post-surgical recurrence in patients with Crohn's disease.	Oliver L, Camps B, Julia-Bergkvist D, Amoedo J, Ramio-Pujol S, Malagon M, Bahi A, Torres P, Domenech E, Guardiola J, Serra-Pages M, Garcia-Gil J, Aldeguer X.	Front Mol Med	10.3389/fmmed.2023.1046414	2023
	Fecal microbiota transplantation for chronic constipation: a systematic review and meta-analysis of clinical efficacy, safety, and microbial dynamics.	Wang K, Gao C, Zhu L, Chen M, Tong YX, Zhang S.	Front Microbiol	10.3389/fmicb.2025.1604571	2025
	Metagenomic analysis of fecal samples in colorectal cancer Egyptians patients post colectomy: A pilot study.	Abo-Hammam RH, Salah M, Shabayek S, Hanora A, Zakeer S, Khattab RH.	AIMS Microbiol	10.3934/microbiol.2024008	2024
	Probiotics and Prebiotics in Subclinical Hypothyroidism of Pregnancy with Small Intestinal Bacterial Overgrowth.	Ouyang Q, Xu Y, Ban Y, Li J, Cai Y, Wu B, Hao Y, Sun Z, Zhang M, Wang M, Wang W, Zhao Y.	Probiotics Antimicrob Proteins	10.1007/s12602-023-10068-4	2024
	Neutral Sodium Humate Modulates Growth, Slaughter Traits, Antioxidant Status, and Gut Health in Yellow-Feathered Broilers.	Lv J, Cen M, Li B, Feng X, Cai H, Zhang H.	Animals (Basel)	10.3390/ani15142142	2025
Genetics	Combined analysis of cross-population healthy adult human microbiome reveals consistent differences in gut microbial characteristics between Western and non-Western countries.	Sheng Y, Wang J, Gao Y, Peng Y, Li X, Huang W, Zhou H, Liu R, Zhang W.	Comput Struct Biotechnol J	10.1016/j.csbj.2023.11.047	2024
	Proton pump inhibitors induce changes in the gut microbiome composition of systemic lupus erythematosus patients.	Li XB, Chu XJ, Cao NW, Wang H, Fang XY, Fan YG, Li BZ, Ye DQ.	BMC Microbiol	10.1186/s12866-022-02533-x	2022
Genetics	The Gut Microbiome Obesity Index: A New Analytical Tool in the Metagenomics Workflow for the Evaluation of Gut Dysbiosis in Obese Humans.	Kulecka M, Jaworski P, Zeber-Lubecka N, Balabas A, Piatkowska M, Czarnowski P, Fraczek B, Tarnowski W, Mikula M, Ostrowski J.	Nutrients	10.3390/nu17142320	2025
	Lactose Breath Test: Possible Strategies to Optimize Test Performance, Accuracy, and Clinical Impact.	Scalese G, Cesarini A, Pallotta L, Ribichini E, Spina L, Diofebi M, Citarella A, Cammarota S, Severi C.	Nutrients	10.3390/nu16203516	2024
	Associations between Fecal Contamination of the Household Environment and Enteric Pathogen Detection in Children Living in Maputo, Mozambique.	Holcomb DA, Knee J, Adriano Z, Capone D, Cumming O, Kowalsky E, Nala R, Viegas E, Stewart JR, Brown J.	Environ Health (Wash)	10.1021/envhealth.4c00283	2025
	Methanobrevibacter smithii, a methanogen consistently colonising the newborn stomach.	Grine G, Boualam MA, Drancourt M.	Eur J Clin Microbiol Infect Dis	10.1007/s10096-017-3084-7	2017
Phylogeny	Relationship Between Gut Microbiota and the Clinical Course of COVID-19 Disease.	Jonjic A, Dolanc I, Slivsek G, Bockor L, Tarle M, Mustapic S, Kmet M, Orehovec B, Kucan Brlic P, Cokaric Brdovcak M, Obad A, Walenta M, Drazic I, Bilic-Zulle L, Luksic I, Bulic N, Goessler W, Jonjic S, Coklo M, Zucko J.	Viruses	10.3390/v17040520	2025
	Alterations of the Gut Microbiome Associated to Methane Metabolism in Mexican Children with Obesity.	Murga-Garrido SM, Orbe-Orihuela YC, Diaz-Benitez CE, Castaneda-Marquez AC, Cornejo-Granados F, Ochoa-Leyva A, Sanchez-Flores A, Cruz M, Burguete-Garcia AI, Lagunas-Martinez A.	Children (Basel)	10.3390/children9020148	2022
Enzymology	H₂ generated by fermentation in the human gut microbiome influences metabolism and competitive fitness of gut butyrate producers.	Campbell A, Gdanetz K, Schmidt AW, Schmidt TM.	Microbiome	10.1186/s40168-023-01565-3	2023
Genetics	Deep insights into the gut microbial community of extreme longevity in south Chinese centenarians by ultra-deep metagenomics and large-scale culturomics.	Li C, Luan Z, Zhao Y, Chen J, Yang Y, Wang C, Jing Y, Qi S, Li Z, Guo H, Xu W, Zhao B, Wu C, Wang S, Yang Y, Sun G.	NPJ Biofilms Microbiomes	10.1038/s41522-022-00282-3	2022
	Detection of Methanobrevobacter smithii and Methanobrevibacter oralis in Lower Respiratory Tract Microbiota.	Hassani Y, Bregeon F, Aboudharam G, Drancourt M, Grine G.	Microorganisms	10.3390/microorganisms8121866	2020
	A systematic review of studies on the faecal microbiota in anorexia nervosa: future research may need to include microbiota from the small intestine.	Schwensen HF, Kan C, Treasure J, Hoiby N, Sjogren M.	Eat Weight Disord	10.1007/s40519-018-0499-9	2018
	Causal effects of gut microbiome on HIV infection: a two-sample mendelian randomization analysis.	Li K, Zhang C, Deng J, Zeng H, Zhang Y, Lai G, Zhong X, Xie B.	BMC Infect Dis	10.1186/s12879-024-09176-5	2024
	Prebiotic Strategies to Manage Lactose Intolerance Symptoms.	Angima G, Qu Y, Park SH, Dallas DC.	Nutrients	10.3390/nu16071002	2024
	Mitigation of ammonia inhibition through bioaugmentation with different microorganisms during anaerobic digestion: Selection of strains and reactor performance evaluation.	Yang Z, Wang W, Liu C, Zhang R, Liu G.	Water Res	10.1016/j.watres.2019.02.048	2019
	The Role Played by Imidazole Propionic Acid in Modulating Gut-Heart Axis and the Development of Atherosclerosis: An Explorative Review.	Pinnelli VB, Ca J, Kandi V, P S, Gr M, Hussain MH, As A, R K, Jp R, T SB, Vadakedath S.	Cureus	10.7759/cureus.94362	2025
	Faecal microbiome and metabolic signatures in rectal neuroendocrine tumors.	Hu W, Chen ZM, Li XX, Lu L, Yang GH, Lei ZX, You LJ, Cui XB, Lu SC, Zhai ZY, Zeng ZY, Chen Y, Huang SL, Gong W.	Theranostics	10.7150/thno.66464	2022
Genetics	Markers of dysbiosis in patients with ulcerative colitis and Crohn's disease.	Danilova NA, Abdulkhakov SR, Grigoryeva TV, Markelova MI, Vasilyev IY, Boulygina EA, Ardatskaya MD, Pavlenko AV, Tyakht AV, Odintsova AK, Abdulkhakov RA.	Ter Arkh	10.26442/00403660.2019.04.000211	2019
Enzymology	Methanogens as emerging pathogens in anaerobic abscesses.	Sogodogo E, Drancourt M, Grine G.	Eur J Clin Microbiol Infect Dis	10.1007/s10096-019-03510-5	2019
	Methanogens and Hydrogen Sulfide Producing Bacteria Guide Distinct Gut Microbe Profiles and Irritable Bowel Syndrome Subtypes.	Villanueva-Millan MJ, Leite G, Wang J, Morales W, Parodi G, Pimentel ML, Barlow GM, Mathur R, Rezaie A, Sanchez M, Ayyad S, Cohrs D, Chang C, Rashid M, Hosseini A, Fiorentino A, Weitsman S, Chuang B, Chang B, Pichetshote N, Pimentel M.	Am J Gastroenterol	10.14309/ajg.0000000000001997	2022
	Interkingdom signaling between gastrointestinal hormones and the gut microbiome.	Zhao X, Qiu Y, Liang L, Fu X.	Gut Microbes	10.1080/19490976.2025.2456592	2025
	A compendium of predicted growths and derived symbiotic relationships between 803 gut microbes in 13 different diets.	Singh R, Dutta A, Bose T, Mande SS.	Curr Res Microb Sci	10.1016/j.crmicr.2022.100127	2022
	Microbial Dysbiosis as an Emerging Pathology of Suicidal Behaviour? A Critical Review, Passing Through Depression to Chronic Pain.	Costanza A, Alexander J, Amerio A, Aguglia A, Magnani L, Parise A, Saverino D, Serafini G, Amore M, Nguyen KD.	Ann Neurosci	10.1177/09727531251349024	2025
Genetics	Microbiome and fragmentation pattern of blood cell-free DNA and fecal metagenome enhance colorectal cancer micro-dysbiosis and diagnosis analysis: a proof-of-concept study.	Zhou Z, Ma Y, Zhang D, Ji R, Wang Y, Zhao J, Ma C, Zhu H, Shen H, Jiang X, Niu Y, Lu J, Zhang B, Tu L, Zhang H, Ma X, Chen P.	mSystems	10.1128/msystems.00276-25	2025
	Carbon-13 stable isotope analysis reveals the existence but insignificance of ruminal methanogenic pathway from acetate in a batch culture system	He ZX, Qiao JY, Tan ZL, Wang M.	Anim Feed Sci Technol	10.1016/j.anifeedsci.2018.10.002	2018
Pathogenicity	Virulence Factors of the Gut Microbiome Are Associated with BMI and Metabolic Blood Parameters in Children with Obesity.	Murga-Garrido SM, Ulloa-Perez EJ, Diaz-Benitez CE, Orbe-Orihuela YC, Cornejo-Granados F, Ochoa-Leyva A, Sanchez-Flores A, Cruz M, Castaneda-Marquez AC, Plett-Torres T, Burguete Garcia AI, Lagunas-Martinez A.	Microbiol Spectr	10.1128/spectrum.03382-22	2023
	Nutritional Approach to Small Intestinal Bacterial Overgrowth: A Narrative Review.	Velasco-Aburto S, Llama-Palacios A, Sanchez MC, Ciudad MJ, Collado L.	Nutrients	10.3390/nu17091410	2025
	Altered Gut Microbial Fermentation and Colonization with Methanobrevibacter smithii in Renal Transplant Recipients.	Knobbe TJ, Douwes RM, Kremer D, Swarte JC, Eisenga MF, Gomes-Neto AW, van Londen M, Peters FTM, Blokzijl H, Nolte IM, Hendriks WH, Harmsen HJM, Bakker SJL.	J Clin Med	10.3390/jcm9020518	2020
	Diversity of Methanogens in Animals' Gut.	Guindo CO, Davoust B, Drancourt M, Grine G.	Microorganisms	10.3390/microorganisms9010013	2020
	The human milk bacteriome and mycobiome and their inter-kingdom interactions viewed across geography.	Sun H, Finlay B, Azad MB, Cuomo CA, Cowen LE, Berdy B, Livny J, Shea T, Aquino EE, Godoy-Vitorino F, Woortman MA, Shumaker M, Alba C, Rodriguez JM, Dominguez-Bello MG.	Front Nutr	10.3389/fnut.2025.1610346	2025
	Irritable Bowel Syndrome in the Elderly Population: A Comprehensive Review.	Valtierra Oba ER, Anguiano Moran AC, Calderon Cortes E, Valtierra Oba MI, Lemus Loeza BM, Rodriguez-Orozco AR.	Cureus	10.7759/cureus.68156	2024
	Models of microbiome evolution incorporating host resource provisioning.	Xiao Y, Li T, Rodrigo A.	ISME Commun	10.1093/ismeco/ycaf059	2025
Metabolism	Methanogenesis associated with altered microbial production of short-chain fatty acids and human-host metabolizable energy.	Dirks B, Davis TL, Carnero EA, Corbin KD, Smith SR, Rittmann BE, Krajmalnik-Brown R.	ISME J	10.1093/ismejo/wraf103	2025
	Commensal Intestinal Protozoa-Underestimated Members of the Gut Microbial Community.	Dubik M, Pilecki B, Moeller JB.	Biology (Basel)	10.3390/biology11121742	2022
Genetics	Metagenomic interrogation of urban Superfund site reveals antimicrobial resistance reservoir and bioremediation potential.	Kolokotronis SO, Bhattacharya C, Panja R, Quate I, Seibert M, Jorgensen E, Mason CE, Henaff EM.	J Appl Microbiol	10.1093/jambio/lxaf076	2025
Phylogeny	Effect of Oregano Essential Oil on Growth and Composition of Gut Prokaryote Microbiota on Striped Bass (Morone saxatilis).	Trejo-Ramos DA, Rodriguez-Arana CO, Cruz-Flores R, Hernandez-Rodriguez M.	Microorganisms	10.3390/microorganisms13020264	2025
Phylogeny	Molecular analysis of the human faecal archaea in a southern Indian population.	Rani SB, Balamurugan R, Ramakrishna BS.	J Biosci	10.1007/s12038-017-9668-7	2017
	Intestinal Microbiota and Vaccinations: A Systematic Review of the Literature.	Loddo F, Lagana P, Rizzo CE, Calderone SM, Romeo B, Venuto R, Maisano D, Fedele F, Squeri R, Nicita A, Nirta A, Genovese G, Bartucciotto L, Genovese C.	Vaccines (Basel)	10.3390/vaccines13030306	2025
	The seasonal changes of the gut microbiome of the population living in traditional lifestyles are represented by characteristic species-level and functional-level SNP enrichment patterns.	Zhu X, Qin J, Tan C, Ning K.	BMC Genomics	10.1186/s12864-021-07372-0	2021
	Gut archaea associated with bacteria colonization and succession during piglet weaning transitions.	Xiong X, Rao Y, Tu X, Wang Z, Gong J, Yang Y, Wu H, Liu X.	BMC Vet Res	10.1186/s12917-022-03330-4	2022
Phylogeny	Alterations of gut microbiota in cirrhotic patients with spontaneous bacterial peritonitis: A distinctive diagnostic feature.	Zhou Z, Lv H, Lv J, Shi Y, Huang H, Chen L, Shi D.	Front Cell Infect Microbiol	10.3389/fcimb.2022.999418	2022
	The fecal microbiotas of women of Pacific and New Zealand European ethnicities are characterized by distinctive enterotypes that reflect dietary intakes and fecal water content.	Renall N, Lawley B, Vatanen T, Merz B, Douwes J, Corbin M, Te Morenga L, Kruger R, Breier BH, Tannock GW.	Gut Microbes	10.1080/19490976.2023.2178801	2023
Metabolism	Targeting the Gut Microbiota's Role in Host Energy Absorption With Precision Nutrition Interventions for the Prevention and Treatment of Obesity.	Corbin KD, Igudesman D, Smith SR, Zengler K, Krajmalnik-Brown R.	Nutr Rev	10.1093/nutrit/nuaf046	2025
	Assessing Methanobrevibacter smithii and Clostridium difficile as not conventional faecal indicators in effluents of a wastewater treatment plant integrated with sludge anaerobic digestion.	Romanazzi V, Bonetta S, Fornasero S, De Ceglia M, Gilli G, Traversi D.	J Environ Manage	10.1016/j.jenvman.2016.09.081	2016
	Methanogens in humans: potentially beneficial or harmful for health.	Chaudhary PP, Conway PL, Schlundt J.	Appl Microbiol Biotechnol	10.1007/s00253-018-8871-2	2018
	Comparative Analysis of Gut Microbiota in Patients with Irritable Bowel Syndrome and Healthy Controls.	Sanchez-Pellicer P, Alamo-Marzo JM, Martinez-Villaescusa M, Nunez-Delegido E, Such-Ronda JF, Huertas-Lopez F, Serrano-Lopez EM, Martinez-Moreno D, Navarro-Lopez V.	J Clin Med	10.3390/jcm14041198	2025
	In-depth investigation of the mechanism in rats with alcoholic acute pancreatitis via DNA methylation, intestinal flora, and fecal metabolomics.	Dong H, Ying W, Zhu S.	J Inflamm (Lond)	10.1186/s12950-025-00463-9	2025
Metabolism	Linking the Gut Microbiota to Bone Health in Anorexia Nervosa.	Aurigemma NC, Koltun KJ, VanEvery H, Rogers CJ, De Souza MJ.	Curr Osteoporos Rep	10.1007/s11914-018-0420-5	2018
	A contributory citizen science project reveals the impact of dietary keys to microbiome health in Spain.	Soler Z, Serrano-Gomez G, Pons-Tarin M, Vega-Abellaneda S, Xie Z, Manjon I, Cognard C, Varela E, Yanez F, Noguera-Segura A, Roca-Bosch M, Manichanh C.	NPJ Biofilms Microbiomes	10.1038/s41522-025-00769-9	2025
	Reduction of Redox Potential Exerts a Key Role in Modulating Gut Microbial Taxa and Function by Dietary Supplementation of Pectin in a Pig Model.	Xu R, Li Q, Wang H, Su Y, Zhu W.	Microbiol Spectr	10.1128/spectrum.03283-22	2023
	Synergistic Effects of Probiotics and Lifestyle Interventions on Intestinal Microbiota Composition and Clinical Outcomes in Obese Adults.	Florencio GP, Xavier AR, Natal ACC, Sadoyama LP, Pena GDG, Menezes RP, Sadoyama Leal G, Patrizzi LJ, Roder DVDB.	Metabolites	10.3390/metabo15020070	2025
	Identification and characterization of archaeal pseudomurein biosynthesis genes through pangenomics.	Lupo V, Roomans C, Royen E, Ongena L, Jacquemin O, Mullender C, Kerff F, Baurain D.	mSystems	10.1128/msystems.01401-24	2025
	Prevalence, risk factors, and treatment of small intestinal bacterial overgrowth in children.	Cho YK, Lee J, Paik CN.	Clin Exp Pediatr	10.3345/cep.2022.00969	2023
Pathogenicity	Development of a Modified-Release Formulation of Lovastatin Targeted to Intestinal Methanogens Implicated in Irritable Bowel Syndrome With Constipation.	Hubert S, Chadwick A, Wacher V, Coughlin O, Kokai-Kun J, Bristol A.	J Pharm Sci	10.1016/j.xphs.2017.09.028	2018
	Non-alcoholic fatty liver disease and the gut microbiota in adolescents: is there a relationship?	Amrousy DE, Ashry HE, Maher S, Elsayed Y, Hasan S.	BMC Pediatr	10.1186/s12887-024-05268-y	2024
	Gut Microbial Dysbiosis and Implications in Solid Organ Transplantation.	Medina CK, Aykut B.	Biomedicines	10.3390/biomedicines12122792	2024
	Alcohol, the gut microbiome, and liver disease.	Jew MH, Hsu CL.	J Gastroenterol Hepatol	10.1111/jgh.16199	2023
Metabolism	Quantitative evaluation of ruminal methane and carbon dioxide formation from formate through C-13 stable isotope analysis in a batch culture system.	He ZX, Qiao JY, Yan QX, Tan ZL, Wang M.	Animal	10.1017/s1751731118000691	2019
Enzymology	First characterization of methanogens in oral cavity in Malian patients with oral cavity pathologies.	Sogodogo E, Doumbo O, Aboudharam G, Kouriba B, Diawara O, Koita H, Togora S, Drancourt M.	BMC Oral Health	10.1186/s12903-019-0929-8	2019
	Gut colonization with methanobrevibacter smithii is associated with childhood weight development.	Mbakwa CA, Penders J, Savelkoul PH, Thijs C, Dagnelie PC, Mommers M, Arts IC.	Obesity (Silver Spring)	10.1002/oby.21266	2015
Enzymology	Quantitative microbial risk assessment of microbial source tracking markers in recreational water contaminated with fresh untreated and secondary treated sewage.	Ahmed W, Hamilton KA, Lobos A, Hughes B, Staley C, Sadowsky MJ, Harwood VJ.	Environ Int	10.1016/j.envint.2018.05.012	2018
	Increased fecal ethanol and enriched ethanol-producing gut bacteria Limosilactobacillus fermentum, Enterocloster bolteae, Mediterraneibacter gnavus and Streptococcus mutans in nonalcoholic steatohepatitis.	Mbaye B, Magdy Wasfy R, Borentain P, Tidjani Alou M, Mottola G, Bossi V, Caputo A, Gerolami R, Million M.	Front Cell Infect Microbiol	10.3389/fcimb.2023.1279354	2023
	Exploring the Dynamic Relationship between the Gut Microbiome and Body Composition across the Human Lifespan: A Systematic Review.	Komodromou I, Andreou E, Vlahoyiannis A, Christofidou M, Felekkis K, Pieri M, Giannaki CD.	Nutrients	10.3390/nu16050660	2024
	Standardized freeze-dried FMT: is the ideal protectant out there?	Pourrat A, Baillieu V, Ansel S, Leonardi M, Poiron P, Bellais S, Paul M, Nebbad B.	Front Microbiol		2025
Genetics	Expanded catalogue of metagenome-assembled genomes reveals resistome characteristics and athletic performance-associated microbes in horse.	Li C, Li X, Guo R, Ni W, Liu K, Liu Z, Dai J, Xu Y, Abduriyim S, Wu Z, Zeng Y, Lei B, Zhang Y, Wang Y, Zeng W, Zhang Q, Chen C, Qiao J, Liu C, Hu S.	Microbiome	10.1186/s40168-022-01448-z	2023
	In vitro evaluation of archaeosome vehicles for transdermal vaccine delivery.	Jia Y, McCluskie MJ, Zhang D, Monette R, Iqbal U, Moreno M, Sauvageau J, Williams D, Deschatelets L, Jakubek ZJ, Krishnan L.	J Liposome Res	10.1080/08982104.2017.1376683	2018
	The specific hallmarks, emerging roles, key mechanisms, and clinical applications of intra-tumoral microbiota in human cancers.	Zhao T, Sun N, Ding J, Peng Z, Han F, Qi X.	Genes Dis	10.1016/j.gendis.2025.101733	2026
Pathogenicity	The Gut Microbiota's Role in Neurological, Psychiatric, and Neurodevelopmental Disorders.	Charitos IA, Inchingolo AM, Ferrante L, Inchingolo F, Inchingolo AD, Castellaneta F, Cotoia A, Palermo A, Scacco S, Dipalma G.	Nutrients	10.3390/nu16244404	2024
	ChipFilter: Microfluidic-Based Comprehensive Sample Preparation Methodology for Microbial Consortia.	Ravi Kumar RK, Ndiaye MM, Haddad I, Vinh J, Verdier Y.	J Proteome Res	10.1021/acs.jproteome.3c00288	2024
	Small Intestinal Bacterial Overgrowth and Childhood Malnutrition: A Comprehensive Review of Available Evidence.	Mares CR, Sasaran MO, Marginean CO.	Nutrients	10.3390/nu16244319	2024
	Improved Quantitative Real-Time PCR Protocol for Detection and Quantification of Methanogenic Archaea in Stool Samples.	Cisek AA, Bak I, Cukrowska B.	Microorganisms	10.3390/microorganisms11030660	2023
	Causal relationships of gut microbiota and blood metabolites with ovarian cancer and endometrial cancer: a Mendelian randomization study.	Chen J, Chen X, Ma J.	J Ovarian Res	10.1186/s13048-025-01630-5	2025
Genetics	Evaluating urine volume and host depletion methods to enable genome-resolved metagenomics of the urobiome.	Lewis ZJ, Scott A, Madden C, Vik D, Zayed AA, Smith GJ, Justice SS, Rudinsky A, Hokamp J, Hale VL.	Microbiome	10.1186/s40168-025-02191-x	2025
Metabolism	Selenium Yeast Alleviates Dextran Sulfate Sodium-Induced Chronic Colitis in Mice by Reducing Proinflammatory Cytokines and Regulating the Gut Microbiota and Their Metabolites.	Wu Z, Li Y, Jiang M, Sang L, Chang B.	J Inflamm Res	10.2147/jir.s449335	2024
	Landscape of the gut archaeome in association with geography, ethnicity, urbanization, and diet in the Chinese population.	Bai X, Sun Y, Li Y, Li M, Cao Z, Huang Z, Zhang F, Yan P, Wang L, Luo J, Wu J, Fan D, Chen H, Zhi M, Lan P, Zeng Z, Wu X, Miao Y, Zuo T.	Microbiome	10.1186/s40168-022-01335-7	2022
	Probing Denitrifying Anaerobic Methane Oxidation via Antimicrobial Intervention: Implications for Innovative Wastewater Management.	Wissink M, Glodowska M, van der Kolk MR, Jetten MSM, Welte CU.	Environ Sci Technol	10.1021/acs.est.3c07197	2024
	Baseline Gut Microbiota Was Associated with Long-Term Immune Response at One Year Following Three Doses of BNT162b2.	Zhang LN, Tan JT, Ng HY, Liao YS, Zhang RQ, Chan KH, Hung IF, Lam TT, Cheung KS.	Vaccines (Basel)	10.3390/vaccines12080916	2024
Metabolism	The hydrogen threshold of obligately methyl-reducing methanogens.	Feldewert C, Lang K, Brune A.	FEMS Microbiol Lett	10.1093/femsle/fnaa137	2020
	Gallstone Disease and Bacterial Metabolic Performance of Gut Microbiota in Middle-Aged and Older Patients.	Georgescu D, Ionita I, Lascu A, Hut EF, Dragan S, Ancusa OE, Ionita M, Calamar-Popovici D, Georgescu LA, Lighezan DF.	Int J Gen Med	10.2147/ijgm.s350104	2022
	Longitudinal transkingdom gut microbial approach towards decompensation in outpatients with cirrhosis.	Bajaj JS, Pena-Rodriguez M, La Reau A, Phillips W, Fuchs M, Davis BC, Sterling RK, Sikaroodi M, Fagan A, Shamsaddini A, Henseler Z, Ward T, Puri P, Lee H, Gillevet PM.	Gut	10.1136/gutjnl-2022-328403	2023
Enzymology	Detection of human fecal contamination by nifH gene quantification of marine waters in the coastal beaches of Rio de Janeiro, Brazil.	Oliveira SS, Sorgine MHF, Bianco K, Pinto LH, Barreto C, Albano RM, Cardoso AM, Clementino MM.	Environ Sci Pollut Res Int	10.1007/s11356-016-7737-3	2016
Phylogeny	Longitudinal survey of total airborne bacterial and archaeal concentrations and bacterial diversity in enriched colony housing and aviaries for laying hens.	St-Germain MW, Letourneau V, Cruaud P, Lemaille C, Robitaille K, Denis E, Boulianne M, Duchaine C.	Poult Sci	10.1016/j.psj.2024.104119	2024
Genetics	Pooled analysis of 3,741 stool metagenomes from 18 cohorts for cross-stage and strain-level reproducible microbial biomarkers of colorectal cancer.	Piccinno G, Thompson KN, Manghi P, Ghazi AR, Thomas AM, Blanco-Miguez A, Asnicar F, Mladenovic K, Pinto F, Armanini F, Puncochar M, Piperni E, Heidrich V, Fackelmann G, Ferrero G, Tarallo S, Nguyen LH, Yan Y, Keles NA, Tuna BG, Vymetalkova V, Trompetto M, Liska V, Hucl T, Vodicka P, Bencsikova B, Carnogurska M, Popovici V, Marmorino F, Cremolini C, Pardini B, Cordero F, Song M, Chan AT, Derosa L, Zitvogel L, Huttenhower C, Naccarati A, Budinska E, Segata N.	Nat Med	10.1038/s41591-025-03693-9	2025
	Multi-Omics Revealed Resveratrol and beta-Hydroxy-beta-methyl Butyric Acid Alone or in Combination Improved the Jejunal Function in Tibetan Sheep.	Ji Q, Zhang F, Zhang Y, Su Q, He T, Hou S, Gui L.	Antioxidants (Basel)	10.3390/antiox13080892	2024
	Association between Gut Dysbiosis and the Occurrence of SIBO, LIBO, SIFO and IMO.	Banaszak M, Gorna I, Wozniak D, Przyslawski J, Drzymala-Czyz S.	Microorganisms	10.3390/microorganisms11030573	2023
	Investigating the causal impact of gut microbiota on arthritis via inflammatory proteins using mendelian randomization.	Pan B, Guo Q, Cai J, Chen L, Zhao Z, Shen P, Wang Y.	Sci Rep	10.1038/s41598-024-79336-9	2024
Phylogeny	Archaeal microbiota population in piglet feces shifts in response to weaning: Methanobrevibacter smithii is replaced with Methanobrevibacter boviskoreani.	Federici S, Miragoli F, Pisacane V, Rebecchi A, Morelli L, Callegari ML.	FEMS Microbiol Lett	10.1093/femsle/fnv064	2015
	Microbiota analysis for risk assessment of xenobiotic exposure and the impact on dysbiosis: identifying potential next-generation probiotics.	Lopez-Moreno A, Langella P, Martin R, Aguilera M.	EFSA J	10.2903/j.efsa.2023.e211010	2023
Phylogeny	Diet and the Gut Microbiome as Determinants Modulating Metabolic Outcomes in Young Obese Adults.	Livantsova EN, Leonov GE, Starodubova AV, Varaeva YR, Vatlin AA, Koshechkin SI, Korotkova TN, Nikityuk DB.	Biomedicines	10.3390/biomedicines12071601	2024
	The cell biology of archaea.	van Wolferen M, Pulschen AA, Baum B, Gribaldo S, Albers SV.	Nat Microbiol	10.1038/s41564-022-01215-8	2022
	Microbial Species that Initially Colonize the Human Gut at Birth or in Early Childhood Can Stay in Human Body for Lifetime.	Li W, Nelson KE.	Microb Ecol	10.1007/s00248-020-01636-0	2021
Phylogeny	Contrasting Fecal Methanogenic and Bacterial Profiles of Organic Dairy Cows Located in Northwest Washington Receiving Either a Mixed Diet of Pasture and TMR or Solely TMR.	Slanzon G, Sischo W, McConnel C.	Animals (Basel)	10.3390/ani12202771	2022
	Integrated metagenomics and metabolomic to reveal the effects of dietary comfrey polysaccharides on the oxidative stability and fatty acid composition of egg yolks in laying hens.	Shang H, Gou W, Liu S, Yuan W, Cao Z, Guo Y, Zhang N.	Poult Sci	10.1016/j.psj.2025.105553	2025
Genetics	Archaea: An under-estimated kingdom in livestock animals.	Peng Y, Xie T, Wu Z, Zheng W, Zhang T, Howe S, Chai J, Deng F, Li Y, Zhao J.	Front Vet Sci	10.3389/fvets.2022.973508	2022
Phylogeny	Diversity of human-associated Methanobrevibacter smithii isolates revealed by multispacer sequence typing.	Nkamga VD, Huynh HT, Aboudharam G, Ruimy R, Drancourt M.	Curr Microbiol	10.1007/s00284-015-0787-9	2015
	Association between monosodium glutamate consumption with changes in gut microbiota and related metabolic dysbiosis-A systematic review.	Ahangari H, Bahramian B, Khezerlou A, Tavassoli M, Kiani-Salmi N, Tarhriz V, Ehsani A.	Food Sci Nutr	10.1002/fsn3.4198	2024
Genetics	Deciphering the microbial communities of alkaline hot spring in Panamik, Ladakh, India using a high-throughput sequencing approach.	Choudhary G, Kumari S, Anu K, Devi S.	Braz J Microbiol	10.1007/s42770-024-01346-6	2024
Genetics	Draft Genome Analysis of Christensenella minuta DSM 22607, exhibiting an unusual expansion of transporter homologs of unknown function.	Coil DA, Jospin G, Eisen JA.	J Genomics	10.7150/jgen.43162	2020
	Association between microbial composition, diversity, and function of the maternal gastrointestinal microbiome with impaired glucose tolerance on the glucose challenge test.	Dreisbach C, Prescott S, Alhusen J, Dudley D, Trinchieri G, Siega-Riz AM.	PLoS One	10.1371/journal.pone.0271261	2022
	The Role of Vulture (Accipitriformes) Cutaneous Microbiota in Infectious Disease Protection.	Lobello M, Bava R, Castagna F, Sotgiu FD, Berlinguer F, Tilocca B.	Microorganisms	10.3390/microorganisms13040898	2025
	Diversity of rumen microbiota using metagenome sequencing and methane yield in Indian sheep fed on straw and concentrate diet.	Malik PK, Trivedi S, Kolte AP, Sejian V, Bhatta R, Rahman H.	Saudi J Biol Sci	10.1016/j.sjbs.2022.103345	2022
	Mutual Metabolic Interactions in Co-cultures of the Intestinal Anaerostipes rhamnosivorans With an Acetogen, Methanogen, or Pectin-Degrader Affecting Butyrate Production.	Bui TPN, Schols HA, Jonathan M, Stams AJM, de Vos WM, Plugge CM.	Front Microbiol	10.3389/fmicb.2019.02449	2019
	A catalogue of 1,167 genomes from the human gut archaeome.	Chibani CM, Mahnert A, Borrel G, Almeida A, Werner A, Brugere JF, Gribaldo S, Finn RD, Schmitz RA, Moissl-Eichinger C.	Nat Microbiol	10.1038/s41564-021-01020-9	2022
	Predictions of DNA mechanical properties at a genomic scale reveal potentially new functional roles of DNA flexibility.	Back G, Walther D.	NAR Genom Bioinform	10.1093/nargab/lqad097	2023
	Nine Cases of Methanogenic Archaea in Refractory Sinusitis, an Emerging Clinical Entity.	Sogodogo E, Fellag M, Loukil A, Nkamga VD, Michel J, Dessi P, Fournier PE, Drancourt M.	Front Public Health	10.3389/fpubh.2019.00038	2019
	Genome-scale community modelling elucidates the metabolic interaction in Indian type-2 diabetic gut microbiota.	Beura S, Kundu P, Das AK, Ghosh A.	Sci Rep	10.1038/s41598-024-63718-0	2024
	Exploring Gut Microbiome in Predicting the Efficacy of Immunotherapy in Non-Small Cell Lung Cancer.	Liu B, Chau J, Dai Q, Zhong C, Zhang J.	Cancers (Basel)	10.3390/cancers14215401	2022
	Intestinal microbiota in adult patients with Short Bowel Syndrome: Preliminary results from a pilot study.	Boccia S, Torre I, Santarpia L, Iervolino C, Del Piano C, Puggina A, Pastorino R, Dragic M, Amore R, Borriello T, Palladino R, Pennino F, Contaldo F, Pasanisi F.	Clin Nutr	10.1016/j.clnu.2016.09.028	2017
	An Oral Botanical Supplement Improves Small Intestinal Bacterial Overgrowth (SIBO) and Facial Redness: Results of an Open-Label Clinical Study.	Min M, Nadora D, Chakkalakal M, Afzal N, Subramanyam C, Gahoonia N, Pan A, Thacker S, Nong Y, Chambers CJ, Sivamani RK.	Nutrients	10.3390/nu16183149	2024
	Prospective Randomized, Double-Blind, Placebo-Controlled Study of a Standardized Oral Pomegranate Extract on the Gut Microbiome and Short-Chain Fatty Acids.	Sivamani RK, Chakkalakal M, Pan A, Nadora D, Min M, Dumont A, Burney WA, Chambers CJ.	Foods	10.3390/foods13010015	2023
Phylogeny	Comparison between 16S rRNA and shotgun sequencing in colorectal cancer, advanced colorectal lesions, and healthy human gut microbiota.	Bars-Cortina D, Ramon E, Rius-Sansalvador B, Guino E, Garcia-Serrano A, Mach N, Khannous-Lleiffe O, Saus E, Gabaldon T, Ibanez-Sanz G, Rodriguez-Alonso L, Mata A, Garcia-Rodriguez A, Obon-Santacana M, Moreno V.	BMC Genomics	10.1186/s12864-024-10621-7	2024
	Anorexia nervosa symptoms are induced after specific gut microbiota dysbiosis transfer in germ-free mice.	Gabriel-Segard T, Heberden C, Mondot S, Duquesnoy M, Dicembre M, Naudon L, Philippe C, Maximin E, Blais A, Jacota M, Lapaque N, Blottiere HM, Paul S, Dore J, Rabot S, Hanachi M.	Gut Microbes	10.1080/19490976.2025.2563701	2025
	Clinical efficacy of non-pharmacological treatment of functional constipation: a systematic review and network meta-analysis.	Tan S, Peng C, Lin X, Peng C, Yang Y, Liu S, Huang L, Bian Y, Li Y, Xu C.	Front Cell Infect Microbiol	10.3389/fcimb.2025.1565801	2025
Pathogenicity	In vitro susceptibility of cultured human methanogens to lovastatin.	Demonfort Nkamga V, Armstrong N, Drancourt M.	Int J Antimicrob Agents	10.1016/j.ijantimicag.2016.09.026	2017
Enzymology	Decay kinetics of microbial source tracking (MST) markers and human adenovirus under the effects of sunlight and salinity.	L L, S G G, K Y H G.	Sci Total Environ	10.1016/j.scitotenv.2016.09.031	2017
	Effects of water, sanitation, and hygiene interventions on detection of enteropathogens and host-specific faecal markers in the environment: a systematic review and individual participant data meta-analysis.	Mertens A, Arnold BF, Benjamin-Chung J, Boehm AB, Brown J, Capone D, Clasen T, Fuhrmeister E, Grembi JA, Holcomb D, Knee J, Kwong LH, Lin A, Luby SP, Nala R, Nelson K, Njenga SM, Null C, Pickering AJ, Rahman M, Reese HE, Steinbaum L, Stewart J, Thilakaratne R, Cumming O, Colford JM, Ercumen A.	Lancet Planet Health	10.1016/s2542-5196(23)00028-1	2023
	Assessment of causal associations among gut microbiota, metabolites, and celiac disease: a bidirectional Mendelian randomization study.	Li T, Feng Y, Wang C, Shi T, Abudurexiti A, Zhang M, Gao F.	Front Microbiol	10.3389/fmicb.2023.1087622	2023
Metabolism	Aerobic culture of methanogenic archaea without an external source of hydrogen.	Khelaifia S, Lagier JC, Nkamga VD, Guilhot E, Drancourt M, Raoult D.	Eur J Clin Microbiol Infect Dis	10.1007/s10096-016-2627-7	2016
	Unraveling the mystery: a Mendelian randomized exploration of gut microbiota and different types of obesity.	Liu S, Li F, Cai Y, Ren L, Sun L, Gang X, Wang G.	Front Cell Infect Microbiol	10.3389/fcimb.2024.1352109	2024
Pathogenicity	Integrating multi-omics data to reveal the host-microbiota interactome in inflammatory bowel disease.	Su F, Su M, Wei W, Wu J, Chen L, Sun X, Liu M, Sun S, Mao R, Bourgonje AR, Hu S.	Gut Microbes	10.1080/19490976.2025.2476570	2025
	Molecular characterization of microorganisms with industrial potential for methane production in sludge from Kangemi sewage treatment plant, Nyeri county-Kenya.	Kimisto AK, Muia AW, Ong'ondo GO, Ndung'u KC.	Heliyon	10.1016/j.heliyon.2023.e15715	2023
	Intestinal microbiology and urinary tract infection associated risk in long-term aged care residents.	Miller SJ, Carpenter L, Taylor SL, Wesselingh SL, Choo JM, Shoubridge AP, Papanicolas LE, Rogers GB, GRACE Investigator Group.	Commun Med (Lond)	10.1038/s43856-024-00583-y	2024
	Gut Microbiota Differences in Children From Distinct Socioeconomic Levels Living in the Same Urban Area in Brazil.	Mello CS, Carmo-Rodrigues MS, Filho HB, Melli LC, Tahan S, Pignatari AC, de Morais MB.	J Pediatr Gastroenterol Nutr	10.1097/mpg.0000000000001186	2016
Pathogenicity	Alterations of Intestinal Microbiome by Antibiotic Therapy in Hospitalized Children.	Fernandes MR, Ignacio A, Rodrigues VA, Groppo FC, Cardoso AL, Avila-Campos MJ, Nakano V.	Microb Drug Resist	10.1089/mdr.2015.0320	2017
Pathogenicity	Gut Microbiota Markers and Dietary Habits Associated with Extreme Longevity in Healthy Sardinian Centenarians.	Palmas V, Pisanu S, Madau V, Casula E, Deledda A, Cusano R, Uva P, Loviselli A, Velluzzi F, Manzin A.	Nutrients	10.3390/nu14122436	2022
	Gut microbiota and non-alcoholic fatty liver disease.	Gkolfakis P, Dimitriadis G, Triantafyllou K.	Hepatobiliary Pancreat Dis Int	10.1016/s1499-3872(15)60026-1	2015
Genetics	Multiomics of yaks reveals significant contribution of microbiome into host metabolism.	Yang S, Zheng J, Mao H, Vinitchaikul P, Wu D, Chai J.	NPJ Biofilms Microbiomes	10.1038/s41522-024-00609-2	2024
	Feed Intake, Methane Emissions, Milk Production and Rumen Methanogen Populations of Grazing Dairy Cows Supplemented with Various C 18 Fatty Acid Sources.	Boland TM, Pierce KM, Kelly AK, Kenny DA, Lynch MB, Waters SM, Whelan SJ, McKay ZC.	Animals (Basel)	10.3390/ani10122380	2020
	Population-level gut microbiome and its associations with environmental factors and metabolic disorders in Southwest China.	Qu Q, Dou Q, Xiang Z, Yu B, Chen L, Fan Z, Zhao X, Yang S, Zeng P.	NPJ Biofilms Microbiomes	10.1038/s41522-025-00661-6	2025
	Stereoisomer-specific reprogramming of a bacterial flagellin sialyltransferase.	Kint N, Dubois T, Viollier PH.	EMBO J	10.15252/embj.2022112880	2023
Genetics	The Capacity to Produce Hydrogen Sulfide (H₂S) via Cysteine Degradation Is Ubiquitous in the Human Gut Microbiome.	Braccia DJ, Jiang X, Pop M, Hall AB.	Front Microbiol	10.3389/fmicb.2021.705583	2021
	The Microbiome in Inflammatory Bowel Disease.	Jauregui-Amezaga A, Smet A.	J Clin Med	10.3390/jcm13164622	2024
	Biofilm's Impact on Inflammatory Bowel Diseases.	Palandurkar GS, Kumar S.	Cureus	10.7759/cureus.45510	2023
	Influence of Body Composition and Specific Anthropometric Parameters on SIBO Type.	Wielgosz-Grochowska JP, Domanski N, Drywien ME.	Nutrients	10.3390/nu15184035	2023
Metabolism	Establishing a causal link between gut microbes, body weight gain and glucose metabolism in humans - towards treatment with probiotics.	Stenman LK, Burcelin R, Lahtinen S.	Benef Microbes	10.3920/bm2015.0069	2016
	Metagenomic assessment of gut microbial communities and risk of severe COVID-19.	Nguyen LH, Okin D, Drew DA, Battista VM, Jesudasen SJ, Kuntz TM, Bhosle A, Thompson KN, Reinicke T, Lo CH, Woo JE, Caraballo A, Berra L, Vieira J, Huang CY, Das Adhikari U, Kim M, Sui HY, Magicheva-Gupta M, McIver L, Goldberg MB, Kwon DS, Huttenhower C, Chan AT, Lai PS.	Genome Med	10.1186/s13073-023-01202-6	2023
	Comparative Analysis of Gut Microbiota in Centenarians and Young People: Impact of Eating Habits and Childhood Living Environment.	Sepp E, Smidt I, Roop T, Stsepetova J, Koljalg S, Mikelsaar M, Soidla I, Ainsaar M, Kolk H, Vallas M, Jaagura M, Mandar R.	Front Cell Infect Microbiol	10.3389/fcimb.2022.851404	2022
	MetaBiome: a multiscale model integrating agent-based and metabolic networks to reveal spatial regulation in gut mucosal microbial communities.	Aminian-Dehkordi J, Dickson A, Valiei A, Mofrad MRK.	mSystems	10.1128/msystems.01652-24	2025
Genetics	Investigating Multi-Omic Signatures of Ethnicity and Dysglycaemia in Asian Chinese and European Caucasian Adults: Cross-Sectional Analysis of the TOFI_Asia Study at 4-Year Follow-Up.	Faraj S, Joblin-Mills A, Sequeira-Bisson IR, Leiu KH, Tung T, Wallbank JA, Fraser K, Miles-Chan JL, Poppitt SD, Taylor MW.	Metabolites	10.3390/metabo15080522	2025
	The relationship between small intestinal bacterial overgrowth and constipation in children - a comprehensive review.	Mares CR, Sasaran MO, Marginean CO.	Front Cell Infect Microbiol	10.3389/fcimb.2024.1431660	2024
	Microbial biodiversity of natural toothbrushes in Mali.	Sogodogo E, Doumbo O, Kouriba B, Aboudharam G.	New Microbes New Infect	10.1016/j.nmni.2021.100844	2021
	Lactobacillus Reuteri DSM 17938 (Limosilactobacillus reuteri) in Diarrhea and Constipation: Two Sides of the Same Coin?	Saviano A, Brigida M, Migneco A, Gunawardena G, Zanza C, Candelli M, Franceschi F, Ojetti V.	Medicina (Kaunas)	10.3390/medicina57070643	2021
Enzymology	Methanogen communities in stools of humans of different age and health status and co-occurrence with bacteria.	Vanderhaeghen S, Lacroix C, Schwab C.	FEMS Microbiol Lett	10.1093/femsle/fnv092	2015
Pathogenicity	Effect of dietary fiber on the methanogen community in the hindgut of Lantang gilts.	Cao Z, Liang JB, Liao XD, Wright AD, Wu YB, Yu B.	Animal	10.1017/s1751731116000525	2016
	Superior ability of dietary fiber utilization in obese breed pigs linked to gut microbial hydrogenotrophy.	Li X, Mu C, Wu H, Zoetendal EG, Huang R, Yu K, Zhu W.	ISME Commun	10.1093/ismeco/ycaf043	2025
	Human Microbiome as an Immunoregulatory Axis: Mechanisms, Dysbiosis, and Therapeutic Modulation.	Cortes M, Olate P, Rodriguez R, Diaz R, Martinez A, Hernandez G, Sepulveda N, Paz EA, Quinones J.	Microorganisms	10.3390/microorganisms13092147	2025
	Alterations in the Gut Microbiota of Tibetan Patients With Echinococcosis.	Cao D, Pang M, Wu D, Chen G, Peng X, Xu K, Fan H.	Front Microbiol	10.3389/fmicb.2022.860909	2022
Phylogeny	The human gut archaeome: identification of diverse haloarchaea in Korean subjects.	Kim JY, Whon TW, Lim MY, Kim YB, Kim N, Kwon MS, Kim J, Lee SH, Choi HJ, Nam IH, Chung WH, Kim JH, Bae JW, Roh SW, Nam YD.	Microbiome	10.1186/s40168-020-00894-x	2020
	Effect of Intensity and Duration of Exercise on Gut Microbiota in Humans: A Systematic Review.	Bonomini-Gnutzmann R, Plaza-Diaz J, Jorquera-Aguilera C, Rodriguez-Rodriguez A, Rodriguez-Rodriguez F.	Int J Environ Res Public Health	10.3390/ijerph19159518	2022
	Codh/Acs-Deficient Methanogens Are Prevalent in Anaerobic Digesters.	Nagoya M, Kouzuma A, Watanabe K.	Microorganisms	10.3390/microorganisms9112248	2021
	Antibiotic Use Prior to COVID-19 Vaccine Is Associated with Higher Risk of COVID-19 and Adverse Outcomes: A Propensity-Scored Matched Territory-Wide Cohort.	Cheung KS, Yan VKC, Lam LK, Ye X, Hung IFN, Chan EW, Leung WK.	Vaccines (Basel)	10.3390/vaccines11081341	2023
	Correlation between body mass index and faecal microbiota from children.	Ignacio A, Fernandes MR, Rodrigues VA, Groppo FC, Cardoso AL, Avila-Campos MJ, Nakano V.	Clin Microbiol Infect	10.1016/j.cmi.2015.10.031	2016
	Methanobrevibacter smithii archaeosomes-entrapped mzNL4-3 virus-like particles induce specific T helper 1-oriented cellular and humoral responses against HIV-1.	Salmani AS, Aghasadeghi MR, Nategh R, Mokhtari-Azad T, Siadat SD.	Curr HIV Res	10.2174/1570162x11666131216125059	2013
Genetics	Non-small cell lung cancer patients treated with Anti-PD1 immunotherapy show distinct microbial signatures and metabolic pathways according to progression-free survival and PD-L1 status.	Dora D, Ligeti B, Kovacs T, Revisnyei P, Galffy G, Dulka E, Krizsan D, Kalcsevszki R, Megyesfalvi Z, Dome B, Weiss GJ, Lohinai Z.	Oncoimmunology	10.1080/2162402x.2023.2204746	2023
Genetics	Dynamic changes in the gut microbiota of SPF Bama piglets during breast and formula feeding.	Zhang C, Liu Z, Yu H, Shen Y, Lu L, Kong F, Sun W, Wei X, Jin L, Ge L, Zeng B.	Front Microbiol	10.3389/fmicb.2025.1537286	2025
Metabolism	Amino Acid and Peptide Utilization Profiles of the Fluoroacetate-Degrading Bacterium Synergistetes Strain MFA1 Under Varying Conditions.	Leong LE, Denman SE, Hugenholtz P, McSweeney CS.	Microb Ecol	10.1007/s00248-015-0641-4	2016
Genetics	Extensive culturomics of 8 healthy samples enhances metagenomics efficiency.	Diakite A, Dubourg G, Dione N, Afouda P, Bellali S, Ngom II, Valles C, Million M, Levasseur A, Cadoret F, Lagier JC, Raoult D.	PLoS One	10.1371/journal.pone.0223543	2019
Pathogenicity	Effect of Elaeagnus angustifolia Honey in the Protection Against Ethanol-Induced Chronic Gastric Injury via Counteracting Oxidative Stress, Interfering with Inflammation and Regulating Gut Microbiota in Mice.	Zhu M, Yang J, Zhao H, Qiu Y, Yuan L, Hong J, Cao W.	Foods	10.3390/foods14091600	2025
Genetics	Association of distinct microbial signatures with premalignant colorectal adenomas.	Lee JWJ, Plichta DR, Asher S, Delsignore M, Jeong T, McGoldrick J, Staller K, Khalili H, Xavier RJ, Chung DC.	Cell Host Microbe	10.1016/j.chom.2023.04.007	2023
Pathogenicity	Impact of commonly used drugs on the composition and metabolic function of the gut microbiota.	Vich Vila A, Collij V, Sanna S, Sinha T, Imhann F, Bourgonje AR, Mujagic Z, Jonkers DMAE, Masclee AAM, Fu J, Kurilshikov A, Wijmenga C, Zhernakova A, Weersma RK.	Nat Commun	10.1038/s41467-019-14177-z	2020
	Metagenomic Shotgun Sequencing Reveals Specific Human Gut Microbiota Associated with Insulin Resistance and Body Fat Distribution in Saudi Women.	Aljuraiban GS, Alfhili MA, Aldhwayan MM, Aljazairy EA, Al-Musharaf S.	Biomolecules	10.3390/biom13040640	2023
	New insights into the interactions between Blastocystis, the gut microbiota, and host immunity.	Deng L, Wojciech L, Gascoigne NRJ, Peng G, Tan KSW.	PLoS Pathog	10.1371/journal.ppat.1009253	2021
Phylogeny	Diversity and community of methanogens in the large intestine of finishing pigs.	Mi J, Peng H, Wu Y, Wang Y, Liao X.	BMC Microbiol	10.1186/s12866-019-1459-x	2019
	Effects of hydrogen in headspace and bicarbonate in media on rumen fermentation, methane production and methanogenic population using in vitro gas production techniques	Qiao JY, Tan ZL, Guan LL, Tang SX, Zhou CS, Han XF, Wang M, Kang JH, He ZX.	Anim Feed Sci Technol	10.1016/j.anifeedsci.2015.05.004	2015
	Investigation of the Critical Biomass of Acclimated Microbial Communities to High Ammonia Concentrations for a Successful Bioaugmentation of Biogas Anaerobic Reactors with Ammonia Inhibition.	Kalamaras SD, Christou ML, Tzenos CA, Vasileiadis S, Karpouzas DG, Kotsopoulos TA.	Microorganisms	10.3390/microorganisms11071710	2023
Enzymology	Intestinal Methanobrevibacter smithii but not total bacteria is related to diet-induced weight gain in rats.	Mathur R, Kim G, Morales W, Sung J, Rooks E, Pokkunuri V, Weitsman S, Barlow GM, Chang C, Pimentel M.	Obesity (Silver Spring)	10.1002/oby.20277	2013
Genetics	Binning long reads in metagenomics datasets using composition and coverage information.	Wickramarachchi A, Lin Y.	Algorithms Mol Biol	10.1186/s13015-022-00221-z	2022
	Deuterium isotope probing (DIP) on Listeria innocua: Optimisation of labelling and impact on viability state.	Trigueros S, Brauge T, Dedole T, Debuiche S, Rebuffel V, Morales S, Marcoux PR, Midelet G.	PLoS One	10.1371/journal.pone.0280885	2023
Pathogenicity	Gut Feelings: How Microbiota Might Impact the Development and Course of Anorexia Nervosa.	Seitz J, Dahmen B, Keller L, Herpertz-Dahlmann B.	Nutrients	10.3390/nu12113295	2020
Genetics	Multi-kingdom gut microbiota dysbiosis is associated with the development of pulmonary arterial hypertension.	Chen Y, Chen Z, Liang L, Li J, Meng L, Yuan W, Xie B, Zhang X, Feng L, Jia Y, Fu Z, Su P, Tong Z, Zhong J, Liu X.	EBioMedicine	10.1016/j.ebiom.2025.105686	2025
	Small Intestinal Bacterial Overgrowth and Irritable Bowel Syndrome - An Update.	Takakura W, Pimentel M.	Front Psychiatry	10.3389/fpsyt.2020.00664	2020
Pathogenicity	Detection of Dysbiosis and Increased Intestinal Permeability in Brazilian Patients with Relapsing-Remitting Multiple Sclerosis.	Pellizoni FP, Leite AZ, Rodrigues NC, Ubaiz MJ, Gonzaga MI, Takaoka NNC, Mariano VS, Omori WP, Pinheiro DG, Matheucci Junior E, Gomes E, de Oliveira GLV.	Int J Environ Res Public Health	10.3390/ijerph18094621	2021
Enzymology	A synthetic consortium of 100 gut commensals modulates the composition and function in a colon model of the microbiome of elderly subjects.	Perez M, Ntemiri A, Tan H, Harris HMB, Roager HM, Ribiere C, O'Toole PW.	Gut Microbes	10.1080/19490976.2021.1919464	2021
	Coated tannin supplementation improves growth performance, nutrients digestibility, and intestinal function in weaned piglets.	Xu T, Ma X, Zhou X, Qian M, Yang Z, Cao P, Han X.	J Anim Sci	10.1093/jas/skac088	2022
	Causal relationship between gut microbiota and chronic renal failure: a two-sample Mendelian randomization study.	Liu X, Mo J, Yang X, Peng L, Zeng Y, Zheng Y, Song G.	Front Microbiol	10.3389/fmicb.2024.1356478	2024
Metabolism	Modeling Dynamics of Human Gut Microbiota Derived from Gluten Metabolism: Obtention, Maintenance and Characterization of Complex Microbial Communities.	Carnicero-Mayo Y, Saenz de Miera LE, Ferrero MA, Navasa N, Casqueiro J.	Int J Mol Sci	10.3390/ijms25074013	2024
	Dispersion of antimicrobial resistant bacteria in pig farms and in the surrounding environment.	Scicchitano D, Leuzzi D, Babbi G, Palladino G, Turroni S, Laczny CC, Wilmes P, Correa F, Leekitcharoenphon P, Savojardo C, Luise D, Martelli P, Trevisi P, Aarestrup FM, Candela M, Rampelli S.	Anim Microbiome	10.1186/s42523-024-00305-8	2024
	IgA Determines Bacterial Composition in the Gut.	Gupta S, Gupta SL, Singh A, Oswal N, Bal V, Rath S, George A, Basu S.	Crohns Colitis 360	10.1093/crocol/otad030	2023
Genetics	Microbial and Metabolic Gut Profiling across Seven Malignancies Identifies Fecal Faecalibacillus intestinalis and Formic Acid as Commonly Altered in Cancer Patients.	Kulecka M, Czarnowski P, Balabas A, Turkot M, Kruczkowska-Tarantowicz K, Zeber-Lubecka N, Dabrowska M, Paszkiewicz-Kozik E, Walewski J, Lugowska I, Kosela-Paterczyk H, Rutkowski P, Kluska A, Piatkowska M, Jagiello-Gruszfeld A, Tenderenda M, Gawinski C, Wyrwicz L, Borucka M, Krzakowski M, Zajac L, Kaminski M, Mikula M, Ostrowski J.	Int J Mol Sci	10.3390/ijms25158026	2024
	The Bacterial Composition of the Gut Microbiota of Mexicans with Overweight and Obesity: A Systematic Review	Samudio-Cruz M, Luna-Angulo A, Cabrera-Ruiz E, Landa-Solis C, Rangel-Lopez E, Carrillo-Mora P, Rios-Martinez J, Toledo-Perez R, Paniagua-Perez R, Martinez-Canseco C, Lino-Gonzalez A, Saldana Solano A, Sanchez-Chapul L.	Microorganisms		2025
	Pattern of methane levels with lactulose breath testing; can we shorten the test duration?	Shaker A, Peng B, Soffer E.	JGH Open	10.1002/jgh3.12592	2021
Genetics	Four functional profiles for fibre and mucin metabolism in the human gut microbiome.	Labarthe S, Plancade S, Raguideau S, Plaza Onate F, Le Chatelier E, Leclerc M, Laroche B.	Microbiome	10.1186/s40168-023-01667-y	2023
	Effects of probiotic administration on overweight or obese children: a meta-analysis and systematic review.	Li Y, Liu T, Qin L, Wu L.	J Transl Med	10.1186/s12967-023-04319-9	2023
	Toxic effects of DEHP and MEHP on gut-liver axis in rats via intestinal flora and metabolomics.	Wang J, Liu H, Kou X, Zhang Y, Wang Y, Chen C, Xiang Z, Wang X, Su C, Liu Y.	iScience	10.1016/j.isci.2024.111135	2024
	Compiling a versatile toolbox for inducible gene expression in Methanosarcina mazei.	Huttermann J, Schmitz R.	Microlife	10.1093/femsml/uqae019	2024
	Weaning Time Affects the Archaeal Community Structure and Functional Potential in Pigs.	Deng F, Peng Y, Zhang Z, Howe S, Wu Z, Dou J, Li Y, Wei X, Wang X, Liang Y, Zhao J, Li Y.	Front Microbiol	10.3389/fmicb.2022.845621	2022
	Archaea influence composition of endoscopically visible ileocolonic biofilms.	Orgler E, Baumgartner M, Duller S, Kumptisch C, Hausmann B, Moser D, Khare V, Lang M, Kocher T, Frick A, Muttenthaler M, Makristathis A, Moissl-Eichinger C, Gasche C.	Gut Microbes	10.1080/19490976.2024.2359500	2024
	Gut-Brain Axis and its Neuro-Psychiatric Effects: A Narrative Review.	Shaik L, Kashyap R, Thotamgari SR, Singh R, Khanna S.	Cureus	10.7759/cureus.11131	2020
	First Study on profiling of gut microbiome in wild and captive Sumatran orangutans (Pongo abelii).	Safika S, Indrawati A, Afiff U, Hastuti YT, Zureni Z, Jati AP.	Vet World	10.14202/vetworld.2023.717-727	2023
Pathogenicity	Targeting the Gut-Kidney Axis in Diarrhea with Kidney-Yang Deficiency Syndrome: The Role of Sishen Pills in Regulating TMAO-Mediated Inflammatory Response.	Xie S, Fang L, Deng N, Shen J, Tan Z, Peng X.	Med Sci Monit	10.12659/msm.944185	2024
	Microbial collaborations and conflicts: unraveling interactions in the gut ecosystem.	Wang S, Mu L, Yu C, He Y, Hu X, Jiao Y, Xu Z, You S, Liu SL, Bao H.	Gut Microbes	10.1080/19490976.2023.2296603	2024
	The sanitary indoor environment-a potential source for intact human-associated anaerobes.	Pausan MR, Blohs M, Mahnert A, Moissl-Eichinger C.	NPJ Biofilms Microbiomes	10.1038/s41522-022-00305-z	2022
Phylogeny	Effects of Dietary Nonfibrous Carbohydrate/Neutral Detergent Fiber Ratio on Methanogenic Archaea and Cellulose-Degrading Bacteria in the Rumen of Karakul Sheep: a 16S rRNA Gene Sequencing Study.	Bai T, Pu X, Guo X, Liu J, Zhao L, Zhang X, Zhang S, Cheng L.	Appl Environ Microbiol	10.1128/aem.01291-22	2023
Metabolism	Temporal analysis of the effect of extruded flaxseed on the swine gut microbiota.	Holman DB, Baurhoo B, Chenier MR.	Can J Microbiol	10.1139/cjm-2014-0317	2014
	Are Faecal Microbiota Analyses on Species-Level Suitable Clinical Biomarkers? A Pilot Study in Subjects with Morbid Obesity.	Farup PG, Maseng MG.	Microorganisms	10.3390/microorganisms9030664	2021
	Effects of ethnicity and geography on the fecal microbiota and dietary habits of Tibeto-Burman hill tribes in Northern Thailand.	Seetaraso T, Gruneck L, Jinatham V, Kantakat S, Albert ML, Therdtatha P, Inta A, Srikummool M, Kampuansai J, Popluechai S.	PLoS One	10.1371/journal.pone.0332108	2025
Metabolism	Structural and Functional Characterization of the Gut Microbiota in Elderly Women With Migraine.	Chen J, Wang Q, Wang A, Lin Z.	Front Cell Infect Microbiol	10.3389/fcimb.2019.00470	2019
	The Obesity-Epigenetics-Microbiome Axis: Strategies for Therapeutic Intervention.	Nohesara S, Mostafavi Abdolmaleky H, Pirani A, Pettinato G, Thiagalingam S.	Nutrients	10.3390/nu17091564	2025
Phylogeny	Methanobrevibacter smithii is the predominant methanogen in patients with constipation-predominant IBS and methane on breath.	Kim G, Deepinder F, Morales W, Hwang L, Weitsman S, Chang C, Gunsalus R, Pimentel M.	Dig Dis Sci	10.1007/s10620-012-2197-1	2012
	Networks of gut bacteria relate to cardiovascular disease in a multi-ethnic population: the HELIUS study.	Warmbrunn MV, Boulund U, Aron-Wisnewsky J, de Goffau MC, Abeka RE, Davids M, Bresser LRF, Levin E, Clement K, Galenkamp H, Ferwerda B, van den Born BJH, Kurilshikov A, Fu J, Zwinderman AH, Soeters MR, van Raalte DH, Herrema H, Groen AK, Nieuwdorp M.	Cardiovasc Res	10.1093/cvr/cvae018	2024
	Distinct filament morphology and membrane tethering features of the dual FtsZ paralogs in Odinarchaeota.	Kumari J, Uthaman A, Bose S, Kundu A, Sharma V, Dutta S, Dhar A, Roy S, Srinivasan R, Pande S, Vinothkumar KR, Gayathri P, Palani S.	EMBO J	10.1038/s44318-025-00529-7	2025
	Evaluation of the nifH gene marker of Methanobrevibacter smithii for the detection of sewage pollution in environmental waters in Southeast Queensland, Australia.	Ahmed W, Sidhu JP, Toze S.	Environ Sci Technol	10.1021/es203372u	2012
	Gastrointestinal Microbiota and Breast Cancer Chemotherapy Interactions: A Systematic Review.	Csendes D, Gutlapalli SD, Prakash K, Swarnakari KM, Bai M, Manoharan MP, Raja R, Jamil A, Desai A, Desai DM, Khan S.	Cureus	10.7759/cureus.31648	2022
	The functional landscape of the appendix microbiome under conditions of health and disease	Sagor M, Islam T, Tamanna N, Bappy M, Danishuddin, Haque M, Lackner M.	Gut Pathog		2025
	Critical appraisal of the SIBO hypothesis and breath testing: A clinical practice update endorsed by the European society of neurogastroenterology and motility (ESNM) and the American neurogastroenterology and motility society (ANMS).	Kashyap P, Moayyedi P, Quigley EMM, Simren M, Vanner S.	Neurogastroenterol Motil	10.1111/nmo.14817	2024
Enzymology	Study of amino acids absorption and gut microbiome on consumption of pea protein blended with enzymes-probiotics supplement.	Rathi A, Gaonkar T, Dhar D, Kallapura G, Jadhav S.	Front Nutr	10.3389/fnut.2024.1307734	2024
Genetics	Beyond bacteria: Reconstructing microorganism connections and deciphering the predicted mutualisms in mammalian gut metagenomes.	Dai Q, Ding J, Cui X, Zhu Y, Chen H, Zhu L.	Ecol Evol	10.1002/ece3.9829	2023
	Microbiome and Diet in Colon Cancer Development and Treatment.	Kato I, Sun J.	Cancer J	10.1097/ppo.0000000000000649	2023
Proteome	Community- and genome-based evidence for a shaping influence of redox potential on bacterial protein evolution.	Dick JM, Meng D.	mSystems	10.1128/msystems.00014-23	2023
	Diagnostic, prognostic, and therapeutic potentials of gut microbiome profiling in human schistosomiasis: A comprehensive systematic review.	Oyono MG, Kenmoe S, Ebogo Belobo JT, Mbah Ntepe LJ, Kameni M, Kamguia LM, Mpotje T, Nono JK.	PLoS Negl Trop Dis	10.1371/journal.pntd.0012844	2025
	Quorum Sensing in Halorubrum saccharovorum Facilitates Cross-Domain Signaling between Archaea and Bacteria.	Thompson TP, Busetti A, Gilmore BF.	Microorganisms	10.3390/microorganisms11051271	2023
	The role of probiotics and synbiotics on treatment of gestational diabetes: systematic review and meta-analysis.	Suastika AV, Widiana IGR, Fatmawati NND, Suastika K, Paulus IB, Sujaya IN.	AJOG Glob Rep	10.1016/j.xagr.2023.100285	2024
	"Trust your gut": exploring the connection between gut microbiome dysbiosis and the advancement of Metabolic Associated Steatosis Liver Disease (MASLD)/Metabolic Associated Steatohepatitis (MASH): a systematic review of animal and human studies.	Bahitham W, Banoun Y, Aljahdali M, Almuaiqly G, Bahshwan SM, Aljahdali L, Sanai FM, Rosado AS, Sergi CM.	Front Nutr	10.3389/fnut.2025.1637071	2025
	Potential Value of Biomarker-Based Approaches for Evaluation and Management of Costly Functional Gastrointestinal Diseases.	Camilleri M, BouSaba J.	Clin Gastroenterol Hepatol	10.1016/j.cgh.2023.04.030	2023
	Dietary honokiol supplementation improves antioxidant capacity, enhances intestinal health, and modulates cecal microbial composition and function of broiler chickens.	Du E, Jiang M, Chen F, Fan Q, Guo S, Zhao N, Jin F, Guo W, Huang S, Wei J.	Poult Sci	10.1016/j.psj.2024.103798	2024
Genetics	Reduced B12 uptake and increased gastrointestinal formate are associated with archaeome-mediated breath methane emission in humans.	Kumpitsch C, Fischmeister FPS, Mahnert A, Lackner S, Wilding M, Sturm C, Springer A, Madl T, Holasek S, Hogenauer C, Berg IA, Schoepf V, Moissl-Eichinger C.	Microbiome	10.1186/s40168-021-01130-w	2021
Enzymology	Technical note: Comparison of biomarker and molecular biological methods for estimating methanogen abundance.	McCartney CA, Bull ID, Waters SM, Dewhurst RJ.	J Anim Sci	10.2527/jas.2013-6513	2013
Metabolism	Interrelation between gut microbiota, SCFA, and fatty acid composition in pigs.	Sebastia C, Folch JM, Ballester M, Estelle J, Passols M, Munoz M, Garcia-Casco JM, Fernandez AI, Castello A, Sanchez A, Crespo-Piazuelo D.	mSystems	10.1128/msystems.01049-23	2024
	Processing and storage methods affect oral and gut microbiome composition.	Superdock DK, Zhang W, Poole AC.	Front Microbiol	10.3389/fmicb.2023.1253570	2023
	Fluorescence in situ hybridization probing of protozoal Entodinium spp. and their methanogenic colonizers in the rumen of cattle fed alfalfa hay or triticale straw.	Xia Y, Kong YH, Seviour R, Forster RJ, Kisidayova S, McAllister TA.	J Appl Microbiol	10.1111/jam.12356	2014
	Dietary fiber for the prevention of childhood obesity: a focus on the involvement of the gut microbiota.	Yang Z, Yang M, Deehan EC, Cai C, Madsen KL, Wine E, Li G, Li J, Liu J, Zhang Z.	Gut Microbes	10.1080/19490976.2024.2387796	2024
	Using whole-genome sequencing (WGS) to plot colorectal cancer-related gut microbiota in a population with varied geography.	Shuwen H, Yinhang W, Xingming Z, Jing Z, Jinxin L, Wei W, Kefeng D.	Gut Pathog	10.1186/s13099-022-00524-x	2022
	Microbial water quality in freshwater lakes with different land use.	Staley ZR, Chase E, Mitraki C, Crisman TL, Harwood VJ.	J Appl Microbiol	10.1111/jam.12312	2013
Pathogenicity	Hydrophobicity of imidazole derivatives correlates with improved activity against human methanogenic archaea.	Khelaifia S, Brunel JM, Raoult D, Drancourt M.	Int J Antimicrob Agents	10.1016/j.ijantimicag.2013.02.013	2013
Enzymology	A real-time qPCR assay for the detection of the nifH gene of Methanobrevibacter smithii, a potential indicator of sewage pollution.	Johnston C, Ufnar JA, Griffith JF, Gooch JA, Stewart JR.	J Appl Microbiol	10.1111/j.1365-2672.2010.04824.x	2010
	Effects of propyl propane thiosulfinate on nutrient utilization, ruminal fermentation, microbial population and methane emissions in goats	Martinez-Fernandez G, Abecia L, Ramos-Morales E, Martin-Garcia AI, Molina-Alcaide E, Yanez-Ruiz DR.	Anim Feed Sci Technol	10.1016/j.anifeedsci.2014.01.008	2014
	Environmental, socioeconomic, and health factors associated with gut microbiome species and strains in isolated Honduras villages.	Shridhar SV, Beghini F, Alexander M, Singh A, Juarez RM, Brito IL, Christakis NA.	Cell Rep	10.1016/j.celrep.2024.114442	2024
Genetics	Rumen metagenome reveals the mechanism of mitigation methane emissions by unsaturated fatty acid while maintaining the performance of dairy cows.	Yang Z, Zheng Y, Liu S, Xie T, Wang Q, Wang Z, Li S, Wang W.	Anim Nutr	10.1016/j.aninu.2024.06.003	2024
Metabolism	Gut microbiota comparison of vaginally and cesarean born infants exclusively breastfed by mothers secreting alpha1-2 fucosylated oligosaccharides in breast milk.	Tonon KM, Morais TB, Taddei CR, Araujo-Filho HB, Abrao ACFV, Miranda A, de Morais MB.	PLoS One	10.1371/journal.pone.0246839	2021
	Sweet Orange Juice Processing By-Product Extracts: A Caries Management Alternative to Chlorhexidine.	Saha S, Boesch C, Maycock J, Wood S, Do T.	Biomolecules	10.3390/biom13111607	2023
Genetics	Assessment of metagenomic workflows using a newly constructed human gut microbiome mock community.	Mori H, Kato T, Ozawa H, Sakamoto M, Murakami T, Taylor TD, Toyoda A, Ohkuma M, Kurokawa K, Ohno H.	DNA Res	10.1093/dnares/dsad010	2023
Genetics	Correlation of the gut microbiome and immune-related adverse events in gastrointestinal cancer patients treated with immune checkpoint inhibitors.	Zhang Y, Cheng S, Zou H, Han Z, Xie T, Zhang B, Dai D, Yin X, Liang Y, Kou Y, Tan Y, Shen L, Peng Z.	Front Cell Infect Microbiol	10.3389/fcimb.2023.1099063	2023
Enzymology	Laboratory tools for detection of archaea in humans.	Dridi B.	Clin Microbiol Infect	10.1111/j.1469-0691.2012.03952.x	2012
	Metagenomic sequencing identified microbial species in the rumen and cecum microbiome responsible for niacin treatment and related to intramuscular fat content in finishing cattle.	Yang Z, Chen X, Yu M, Jing R, Bao L, Zhao X, Pan K, Chao B, Qu M.	Front Microbiol	10.3389/fmicb.2024.1334068	2024
	The Gut Microbiome Is Altered in Postmenopausal Women With Osteoporosis and Osteopenia.	Rettedal EA, Ilesanmi-Oyelere BL, Roy NC, Coad J, Kruger MC.	JBMR Plus	10.1002/jbm4.10452	2021
Metabolism	The Crystal Structure of Dph2 in Complex with Elongation Factor 2 Reveals the Structural Basis for the First Step of Diphthamide Biosynthesis.	Fenwick MK, Dong M, Lin H, Ealick SE.	Biochemistry	10.1021/acs.biochem.9b00718	2019
Enzymology	Probiotics for the improvement of metabolic profiles in patients with metabolic-associated fatty liver disease: A systematic review and meta-analysis of randomized controlled trials.	Wang Q, Wang Z, Pang B, Zheng H, Cao Z, Feng C, Ma W, Wei J.	Front Endocrinol (Lausanne)	10.3389/fendo.2022.1014670	2022
	Sewage pollution in urban stormwater runoff as evident from the widespread presence of multiple microbial and chemical source tracking markers.	Sidhu JP, Ahmed W, Gernjak W, Aryal R, McCarthy D, Palmer A, Kolotelo P, Toze S.	Sci Total Environ	10.1016/j.scitotenv.2013.06.020	2013
	Contributions of Human-Associated Archaeal Metabolites to Tumor Microenvironment and Carcinogenesis.	Cai M, Kandalai S, Tang X, Zheng Q.	Microbiol Spectr	10.1128/spectrum.02367-21	2022
Genetics	Dynamics of Gut Microbiota and Short-Chain Fatty Acids during a Cycling Grand Tour Are Related to Exercise Performance and Modulated by Dietary Intake.	Fernandez-Sanjurjo M, Fernandez J, Martinez-Camblor P, Rodriguez-Alonso M, Ortolano-Rios R, Pinto-Hernandez P, Castilla-Silgado J, Coto-Vilcapoma A, Ruiz L, Villar CJ, Tomas-Zapico C, Margolles A, Fernandez-Garcia B, Iglesias-Gutierrez E, Lombo F.	Nutrients	10.3390/nu16050661	2024
	Gut Microbiota-Based Therapies for Irritable Bowel Syndrome.	Stern EK, Brenner DM.	Clin Transl Gastroenterol	10.1038/ctg.2018.2	2018
	Thg1 family 3'-5' RNA polymerases as tools for targeted RNA synthesis.	Jayasinghe MI, Patel KJ, Jackman JE.	RNA	10.1261/rna.080156.124	2024
	Tobacco-smoking-related prevalence of methanogens in the oral fluid microbiota.	Grine G, Terrer E, Boualam MA, Aboudharam G, Chaudet H, Ruimy R, Drancourt M.	Sci Rep	10.1038/s41598-018-27372-7	2018
Metabolism	Differences in the methanogen population exist in sika deer (Cervus nippon) fed different diets in China.	Li ZP, Liu HL, Jin CA, Cui XZ, Jing Y, Yang FH, Li GY, Wright AD.	Microb Ecol	10.1007/s00248-013-0282-4	2013
Genetics	Dysbiosis and relapse-related microbiome in inflammatory bowel disease: A shotgun metagenomic approach.	Serrano-Gomez G, Mayorga L, Oyarzun I, Roca J, Borruel N, Casellas F, Varela E, Pozuelo M, Machiels K, Guarner F, Vermeire S, Manichanh C.	Comput Struct Biotechnol J	10.1016/j.csbj.2021.11.037	2021
	Microbes as medicine.	Daisley BA, Allen-Vercoe E.	Ann N Y Acad Sci	10.1111/nyas.15237	2024
	Sarecycline Demonstrated Reduced Activity Compared to Minocycline against Microbial Species Representing Human Gastrointestinal Microbiota.	Ghannoum MA, Long L, Bunick CG, Del Rosso JQ, Gamal A, Tyring SK, McCormick TS, Grada A.	Antibiotics (Basel)	10.3390/antibiotics11030324	2022
Genetics	Age-related prevalence of Methanomassiliicoccus luminyensis in the human gut microbiome.	Dridi B, Henry M, Richet H, Raoult D, Drancourt M.	APMIS	10.1111/j.1600-0463.2012.02899.x	2012
Phylogeny	Intestinal Dysbiosis in Subjects with Obesity from Western Mexico and Its Association with a Proinflammatory Profile and Disturbances of Folate (B9) and Carbohydrate Metabolism.	Riggen-Bueno V, Del Toro-Arreola S, Baltazar-Diaz TA, Vega-Magana AN, Pena-Rodriguez M, Castano-Jimenez PA, Sanchez-Orozco LV, Vera-Cruz JM, Bueno-Topete MR.	Metabolites	10.3390/metabo14020121	2024
Genetics	Multi-biome analysis identifies distinct gut microbial signatures and their crosstalk in ulcerative colitis and Crohn's disease.	Akiyama S, Nishijima S, Kojima Y, Kimura M, Ohsugi M, Ueki K, Mizokami M, Hattori M, Tsuchiya K, Uemura N, Kawai T, Bork P, Nagata N.	Nat Commun	10.1038/s41467-024-54797-8	2024
Phylogeny	Biodiversity and composition of methanogenic populations in the rumen of cows fed alfalfa hay or triticale straw.	Kong Y, Xia Y, Seviour R, Forster R, McAllister TA.	FEMS Microbiol Ecol	10.1111/1574-6941.12062	2013
	In-depth metataxonomic investigation reveals low richness, high intervariability, and diverse phylotype candidates of archaea in the human urogenital tract.	Kim YB, Whon TW, Kim JY, Kim J, Kim Y, Lee SH, Park SE, Kim EJ, Son HS, Roh SW.	Sci Rep	10.1038/s41598-023-38710-9	2023
	The Overlooked Microbiome-Considering Archaea and Eukaryotes Using Multiplex Nanopore-16S-/18S-rDNA-Sequencing: A Technical Report Focusing on Nasopharyngeal Microbiomes.	Baehren C, Pembaur A, Weil PP, Wewers N, Schult F, Wirth S, Postberg J, Aydin M.	Int J Mol Sci	10.3390/ijms24021426	2023
Phylogeny	IgA-Biome Profiles Correlate with Clinical Parkinson's Disease Subtypes.	Brown EL, Essigmann HT, Hoffman KL, Alexander AS, Newmark M, Jiang ZD, Suescun J, Schiess MC, Hanis CL, DuPont HL.	J Parkinsons Dis	10.3233/jpd-230066	2023
	A randomized trial involving a multifunctional diet reveals systematic lipid remodeling and improvements in cardiometabolic risk factors in middle aged to aged adults.	Arroyo CB, Ocariz MG, Rogova O, Al-Majdoub M, Bjorck I, Tovar J, Spegel P.	Front Nutr	10.3389/fnut.2023.1236153	2023
	Characterization of Systemic and Mucosal Humoral Immune Responses to an Adjuvanted Intranasal SARS-CoV-2 Protein Subunit Vaccine Candidate in Mice.	Maltseva M, Galipeau Y, Renner TM, Deschatelets L, Durocher Y, Akache B, Langlois MA.	Vaccines (Basel)	10.3390/vaccines11010030	2022
	Effect of repeated Campylobacter jejuni infection on gut flora and mucosal defense in a rat model of post infectious functional and microbial bowel changes.	Sung J, Morales W, Kim G, Pokkunuri V, Weitsman S, Rooks E, Marsh Z, Barlow GM, Chang C, Pimentel M.	Neurogastroenterol Motil	10.1111/nmo.12118	2013
	Sulfated lactosyl archaeol (SLA) archaeosomes as a vaccine adjuvant.	Akache B, McCluskie MJ.	Hum Vaccin Immunother	10.1080/21645515.2024.2395081	2024
Pathogenicity	Archaea prevalence in inflamed pulp tissues.	Efenberger M, Agier J, Pawlowska E, Brzezinska-Blaszczyk E.	Cent Eur J Immunol	10.5114/ceji.2015.51358	2015
	Multi-omics revealed the long-term effect of ruminal keystone bacteria and the microbial metabolome on lactation performance in adult dairy goats.	Wang D, Chen L, Tang G, Yu J, Chen J, Li Z, Cao Y, Lei X, Deng L, Wu S, Guan LL, Yao J.	Microbiome	10.1186/s40168-023-01652-5	2023
	Effects of synbiotic supplementation on anthropometric indices and body composition in overweight or obese children and adolescents: a randomized, double-blind, placebo-controlled clinical trial.	Atazadegan MA, Heidari-Beni M, Entezari MH, Sharifianjazi F, Kelishadi R.	World J Pediatr	10.1007/s12519-022-00664-9	2023
Pathogenicity	Monosodium L-Glutamate and Dietary Fat Differently Modify the Composition of the Intestinal Microbiota in Growing Pigs.	Feng ZM, Li TJ, Wu L, Xiao DF, Blachier F, Yin YL.	Obes Facts	10.1159/000380889	2015
	Characterization of the ruminal microbiota in sheep and goats fed different levels of tannin-rich Sericea lespedeza hay.	Min BR, Wang W, Pitta DW, Indugu N, Patra AK, Wang HH, Abrahamsen F, Hilaire M, Puchala R.	J Anim Sci	10.1093/jas/skae198	2024
	An Aggregation-defective Mutant of Methanothermobacter sp. CaT2 Reveals Unique Protein-dependent Aggregation.	Sumikawa K, Kosaka T, Mayahara N, Matsutani M, Udo K, Yamada M.	Microbes Environ	10.1264/jsme2.me19014	2019
	Chitin-glucan supplementation improved postprandial metabolism and altered gut microbiota in subjects at cardiometabolic risk in a randomized trial.	Ranaivo H, Zhang Z, Alligier M, Van Den Berghe L, Sothier M, Lambert-Porcheron S, Feugier N, Cuerq C, Machon C, Neyrinck AM, Seethaler B, Rodriguez J, Roumain M, Muccioli GG, Maquet V, Laville M, Bischoff SC, Walter J, Delzenne NM, Nazare JA.	Sci Rep	10.1038/s41598-022-12920-z	2022
Genetics	Integrative analysis with microbial modelling and machine learning uncovers potential alleviators for ulcerative colitis.	Zhu J, Yin J, Chen J, Hu M, Lu W, Wang H, Zhang H, Chen W.	Gut Microbes	10.1080/19490976.2024.2336877	2024
	Fecal Microbiota Transplantation Could Improve Chronic Diarrhea in Cynomolgus Monkey by Alleviating Inflammation and Modulating Gut Microbiota.	Tian P, Gao J, Liang L, Cui B, Hu Q, Zhou W, Li B, Liu Y, Chen T, Rao J, Wei H.	Biomedicines	10.3390/biomedicines10123016	2022
Enzymology	Molecular diversity of methanogens in fecal samples from captive Sumatran orangutans (Pongo abelii).	Facey HV, Northwood KS, Wright AD.	Am J Primatol	10.1002/ajp.21992	2012
	The Role of the Gut Microbiota in Anorexia Nervosa in Children and Adults-Systematic Review.	Anton-Paduraru DT, Trofin F, Nastase EV, Miftode RS, Miftode IL, Trandafirescu MF, Cojocaru E, Tarca E, Mindru DE, Dorneanu OS.	Int J Mol Sci	10.3390/ijms25010041	2023
	Poly-omic risk scores predict inflammatory bowel disease diagnosis.	Arehart CH, Sterrett JD, Garris RL, Quispe-Pilco RE, Gignoux CR, Evans LM, Stanislawski MA.	mSystems	10.1128/msystems.00677-23	2024
Pathogenicity	Gut microbiota and inflammation patterns for specialized athletes: a multi-cohort study across different types of sports.	Li Y, Cheng M, Zha Y, Yang K, Tong Y, Wang S, Lu Q, Ning K.	mSystems	10.1128/msystems.00259-23	2023
Pathogenicity	Intestinal Microbes in Autoimmune and Inflammatory Disease.	Wu WH, Zegarra-Ruiz DF, Diehl GE.	Front Immunol	10.3389/fimmu.2020.597966	2020
	Double emulsions as a high-throughput enrichment and isolation platform for slower-growing microbes.	McCully AL, Loop Yao M, Brower KK, Fordyce PM, Spormann AM.	ISME Commun	10.1038/s43705-023-00241-9	2023
Metabolism	Diversity of methanogens in the hindgut of captive white rhinoceroses, Ceratotherium simum.	Luo YH, Wright AD, Li YL, Li H, Yang QH, Luo LJ, Yang MX.	BMC Microbiol	10.1186/1471-2180-13-207	2013
	Exploring the Relationship between the Gut Microbiota and Ageing: A Possible Age Modulator.	Salazar J, Duran P, Diaz MP, Chacin M, Santeliz R, Mengual E, Gutierrez E, Leon X, Diaz A, Bernal M, Escalona D, Hernandez LAP, Bermudez V.	Int J Environ Res Public Health	10.3390/ijerph20105845	2023
	Relationship of human-associated microbial source tracking markers with Enterococci in Gulf of Mexico waters.	Gordon KV, Brownell M, Wang SY, Lepo JE, Mott J, Nathaniel R, Kilgen M, Hellein KN, Kennedy E, Harwood VJ.	Water Res	10.1016/j.watres.2012.10.032	2013
	The vulvar microbiome in lichen sclerosus and high-grade intraepithelial lesions.	Pagan L, Huisman BW, van der Wurff M, Naafs RGC, Schuren FHJ, Sanders IMJG, Smits WK, Zwittink RD, Burggraaf J, Rissmann R, Piek JMJ, Henderickx JGE, van Poelgeest MIE.	Front Microbiol	10.3389/fmicb.2023.1264768	2023
	An open-label pilot trial of faecal microbiome transfer to restore the gut microbiome in anorexia nervosa: protocol.	Wilson BC, Derraik JGB, Albert BB, Leong KSW, Tweedie-Cullen RY, Creagh C, Depczynski M, Edwards T, Vatanen T, Thabrew H, Cutfield WS, O'Sullivan JM.	BMJ Open	10.1136/bmjopen-2022-070616	2023
	HuBac and nifH source tracking markers display a relationship to land use but not rainfall.	Gentry-Shields J, Rowny JG, Stewart JR.	Water Res	10.1016/j.watres.2012.09.016	2012
	The gut microbiota in multiple sclerosis varies with disease activity.	Thirion F, Sellebjerg F, Fan Y, Lyu L, Hansen TH, Pons N, Levenez F, Quinquis B, Stankevic E, Sondergaard HB, Dantoft TM, Poulsen CS, Forslund SK, Vestergaard H, Hansen T, Brix S, Oturai A, Sorensen PS, Ehrlich SD, Pedersen O.	Genome Med	10.1186/s13073-022-01148-1	2023
	Effects of Microbiota Imbalance in Anxiety and Eating Disorders: Probiotics as Novel Therapeutic Approaches.	Navarro-Tapia E, Almeida-Toledano L, Sebastiani G, Serra-Delgado M, Garcia-Algar O, Andreu-Fernandez V.	Int J Mol Sci	10.3390/ijms22052351	2021
	Gut microbiota in forty cases of egyptian relapsing remitting multiple sclerosis.	Elgendy SG, Abd-Elhameed R, Daef E, Mohammed SM, Hassan HM, El-Mokhtar MA, Nasreldein A, Khedr EM.	Iran J Microbiol	10.18502/ijm.v13i5.7428	2021
	Exercise and microbiome: From big data to therapy.	Meng D, Ai S, Spanos M, Shi X, Li G, Cretoiu D, Zhou Q, Xiao J.	Comput Struct Biotechnol J	10.1016/j.csbj.2023.10.034	2023
Phylogeny	Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry identification of Archaea: towards the universal identification of living organisms.	Dridi B, Raoult D, Drancourt M.	APMIS	10.1111/j.1600-0463.2011.02833.x	2012
	Microbiota as a state-of-the-art approach in precision medicine for pancreatic cancer management: A comprehensive systematic review.	Hesami Z, Sabzehali F, Khorsand B, Alipour S, Sadeghi A, Asri N, Pazienza V, Houri H.	iScience	10.1016/j.isci.2025.112314	2025
	Is detection of enteropathogens and human or animal faecal markers in the environment associated with subsequent child enteric infections and growth: an individual participant data meta-analysis.	Mertens A, Arnold BF, Benjamin-Chung J, Boehm AB, Brown J, Capone D, Clasen T, Fuhrmeister ER, Grembi JA, Holcomb D, Knee J, Kwong LH, Lin A, Luby SP, Nala R, Nelson K, Njenga SM, Null C, Pickering AJ, Rahman M, Reese HE, Steinbaum L, Stewart JR, Thilakaratne R, Cumming O, Colford JM, Ercumen A.	Lancet Glob Health	10.1016/s2214-109x(23)00563-6	2024
Pathogenicity	Associations of plasma trimethylamine N-oxide, choline, carnitine, and betaine with inflammatory and cardiometabolic risk biomarkers and the fecal microbiome in the Multiethnic Cohort Adiposity Phenotype Study.	Fu BC, Hullar MAJ, Randolph TW, Franke AA, Monroe KR, Cheng I, Wilkens LR, Shepherd JA, Madeleine MM, Le Marchand L, Lim U, Lampe JW.	Am J Clin Nutr	10.1093/ajcn/nqaa015	2020
	Contribution of lateral gene transfer to the gene repertoire of a gut-adapted methanogen.	Lurie-Weinberger MN, Peeri M, Gophna U.	Genomics	10.1016/j.ygeno.2011.10.005	2012
Genetics	Human Genes Involved in the Interaction between Host and Gut Microbiome: Regulation and Pathogenic Mechanisms.	Boccuto L, Tack J, Ianiro G, Abenavoli L, Scarpellini E.	Genes (Basel)	10.3390/genes14040857	2023
Genetics	In Vitro Modelling of Oral Microbial Invasion in the Human Colon.	Etienne-Mesmin L, Meslier V, Uriot O, Fournier E, Deschamps C, Denis S, David A, Jegou S, Morabito C, Quinquis B, Thirion F, Plaza Onate F, Le Chatelier E, Ehrlich SD, Blanquet-Diot S, Almeida M.	Microbiol Spectr	10.1128/spectrum.04344-22	2023
Metabolism	Elevated serum ceramides are linked with obesity-associated gut dysbiosis and impaired glucose metabolism.	Kayser BD, Prifti E, Lhomme M, Belda E, Dao MC, Aron-Wisnewsky J, MICRO-Obes Consortium, Kontush A, Zucker JD, Rizkalla SW, Dugail I, Clement K.	Metabolomics	10.1007/s11306-019-1596-0	2019
Enzymology	Archaea as emerging organisms in complex human microbiomes.	Dridi B, Raoult D, Drancourt M.	Anaerobe	10.1016/j.anaerobe.2011.03.001	2011
	Rumen and fecal microbiota profiles associated with immunity of young and adult goats.	Luo T, Li Y, Zhang W, Liu J, Shi H.	Front Immunol	10.3389/fimmu.2022.978402	2022
	Impact of inulin and yeast containing synbiotic on calves' productivity and greenhouse gas production.	Jonova S, Ilgaza A, Zolovs M, Balins A.	Vet World	10.14202/vetworld.2020.1017-1024	2020
	Gut Microbiota as a Potential Predictive Biomarker in Relapsing-Remitting Multiple Sclerosis.	Navarro-Lopez V, Mendez-Miralles MA, Vela-Yebra R, Fries-Ramos A, Sanchez-Pellicer P, Ruzafa-Costas B, Nunez-Delegido E, Gomez-Gomez H, Chumillas-Lidon S, Pico-Monllor JA, Navarro-Moratalla L.	Genes (Basel)	10.3390/genes13050930	2022
	Christensenella minuta interacts with multiple gut bacteria.	Xu C, Jiang H, Feng LJ, Jiang MZ, Wang YL, Liu SJ.	Front Microbiol	10.3389/fmicb.2024.1301073	2024
Metabolism	Interplay between Dysbiosis of Gut Microbiome, Lipid Metabolism, and Tumorigenesis: Can Gut Dysbiosis Stand as a Prognostic Marker in Cancer?	Chattopadhyay I, Gundamaraju R, Jha NK, Gupta PK, Dey A, Mandal CC, Ford BM.	Dis Markers	10.1155/2022/2941248	2022
	Outcome of breath tests in adult patients with suspected small intestinal bacterial overgrowth.	Mattsson J, Minaya MT, Monegro M, Lebwohl B, Lewis SK, Green PH, Stenberg R.	Gastroenterol Hepatol Bed Bench		2017
Phylogeny	Increased Gut Redox and Depletion of Anaerobic and Methanogenic Prokaryotes in Severe Acute Malnutrition.	Million M, Tidjani Alou M, Khelaifia S, Bachar D, Lagier JC, Dione N, Brah S, Hugon P, Lombard V, Armougom F, Fromonot J, Robert C, Michelle C, Diallo A, Fabre A, Guieu R, Sokhna C, Henrissat B, Parola P, Raoult D.	Sci Rep	10.1038/srep26051	2016
Enzymology	Culture-based indicators of fecal contamination and molecular microbial indicators rarely correlate with Campylobacter spp. in recreational waters.	Hellein KN, Battie C, Tauchman E, Lund D, Oyarzabal OA, Lepo JE.	J Water Health	10.2166/wh.2011.154	2011
	In silico docking and molecular dynamics for the discovery of inhibitors of enteric methane production in ruminants - A review.	Ranaweera KKTN, Baik M.	Anim Biosci	10.5713/ab.24.0291	2025
Phylogeny	Performance of human fecal anaerobe-associated PCR-based assays in a multi-laboratory method evaluation study.	Layton BA, Cao Y, Ebentier DL, Hanley K, Balleste E, Brandao J, Byappanahalli M, Converse R, Farnleitner AH, Gentry-Shields J, Gidley ML, Gourmelon M, Lee CS, Lee J, Lozach S, Madi T, Meijer WG, Noble R, Peed L, Reischer GH, Rodrigues R, Rose JB, Schriewer A, Sinigalliano C, Srinivasan S, Stewart J, Van De Werfhorst LC, Wang D, Whitman R, Wuertz S, Jay J, Holden PA, Boehm AB, Shanks O, Griffith JF.	Water Res	10.1016/j.watres.2013.05.060	2013
	Improvement of crAssphage detection/quantification method and its extensive application for food safety.	Lee SY, Yang J, Lee JH.	Front Microbiol	10.3389/fmicb.2023.1185788	2023
	Microbiota, Microbial Metabolites, and Barrier Function in A Patient with Anorexia Nervosa after Fecal Microbiota Transplantation.	Prochazkova P, Roubalova R, Dvorak J, Tlaskalova-Hogenova H, Cermakova M, Tomasova P, Sediva B, Kuzma M, Bulant J, Bilej M, Hrabak P, Meisnerova E, Lambertova A, Papezova H.	Microorganisms	10.3390/microorganisms7090338	2019
	Hydrogen-methane breath testing results influenced by oral hygiene.	Erdrich S, Tan ECK, Hawrelak JA, Myers SP, Harnett JE.	Sci Rep	10.1038/s41598-020-79554-x	2021
Enzymology	A new methanogen "Methanobrevibacter massiliense" isolated in a case of severe periodontitis.	Huynh HTT, Pignoly M, Drancourt M, Aboudharam G.	BMC Res Notes	10.1186/s13104-017-2980-3	2017
	Sewage exfiltration as a source of storm drain contamination during dry weather in urban watersheds.	Sercu B, Van De Werfhorst LC, Murray JL, Holden PA.	Environ Sci Technol	10.1021/es200981k	2011
	Effects of Coenzyme Q10 on the Biomarkers (Hydrogen, Methane, SCFA and TMA) and Composition of the Gut Microbiome in Rats.	Ivanova AY, Shirokov IV, Toshchakov SV, Kozlova AD, Obolenskaya ON, Mariasina SS, Ivlev VA, Gartseev IB, Medvedev OS.	Pharmaceuticals (Basel)	10.3390/ph16050686	2023
Enzymology	Lean breed Landrace pigs harbor fecal methanogens at higher diversity and density than obese breed Erhualian pigs.	Luo YH, Su Y, Wright AD, Zhang LL, Smidt H, Zhu WY.	Archaea	10.1155/2012/605289	2012
Metabolism	Co-abundance analysis reveals hidden players associated with high methane yield phenotype in sheep rumen microbiome.	Ghanbari Maman L, Palizban F, Fallah Atanaki F, Elmi Ghiasi N, Ariaeenejad S, Ghaffari MR, Hosseini Salekdeh G, Kavousi K.	Sci Rep	10.1038/s41598-020-61942-y	2020
Metabolism	L-Arabinose Elicits Gut-Derived Hydrogen Production and Ameliorates Metabolic Syndrome in C57BL/6J Mice on High-Fat-Diet.	Zhao L, Wang Y, Zhang G, Zhang T, Lou J, Liu J.	Nutrients	10.3390/nu11123054	2019
Genetics	An extended catalog of integrated prophages in the infant and adult fecal microbiome shows high prevalence of lysogeny.	Dikareva E, Matharu D, Lahtinen E, Kolho KL, De Vos WM, Salonen A, Ponsero AJ.	Front Microbiol	10.3389/fmicb.2023.1254535	2023
	Influence of maternal factors on the rumen microbiome and subsequent host performance.	Cunningham HC, Austin KJ, Cammack KM.	Transl Anim Sci	10.1093/tas/txy058	2018
Metabolism	Degradation of lignified secondary cell walls of lucerne (Medicago sativa L.) by rumen fungi growing in methanogenic co-culture.	Bootten TJ, Joblin KN, McArdle BH, Harris PJ.	J Appl Microbiol	10.1111/j.1365-2672.2011.05127.x	2011
Phylogeny	Isolation of a Novel Thermophilic Methanogen and the Evolutionary History of the Class Methanobacteria.	Lv Z, Ding J, Wang H, Wan J, Chen Y, Liang L, Yu T, Wang Y, Wang F.	Biology (Basel)	10.3390/biology11101514	2022
Enzymology	Molecular profiling and identification of methanogenic archaeal species from rabbit caecum.	Kusar D, Avgustin G.	FEMS Microbiol Ecol	10.1111/j.1574-6941.2010.00980.x	2010
Genetics	Scalable Microbial Strain Inference in Metagenomic Data Using StrainFacts.	Smith BJ, Li X, Shi ZJ, Abate A, Pollard KS.	Front Bioinform	10.3389/fbinf.2022.867386	2022
Metabolism	Gut Colonization with Methanogenic Archaea Lowers Plasma Trimethylamine N-oxide Concentrations in Apolipoprotein e-/- Mice.	Ramezani A, Nolin TD, Barrows IR, Serrano MG, Buck GA, Regunathan-Shenk R, West RE, Latham PS, Amdur R, Raj DS.	Sci Rep	10.1038/s41598-018-33018-5	2018
	Immunogenic properties of the human gut-associated archaeon Methanomassiliicoccus luminyensis and its susceptibility to antimicrobial peptides.	Bang C, Vierbuchen T, Gutsmann T, Heine H, Schmitz RA.	PLoS One	10.1371/journal.pone.0185919	2017
Metabolism	Gut enterotype-dependent modulation of gut microbiota and their metabolism in response to xanthohumol supplementation in healthy adults.	Jamieson PE, Smart EB, Bouranis JA, Choi J, Danczak RE, Wong CP, Paraiso IL, Maier CS, Ho E, Sharpton TJ, Metz TO, Bradley R, Stevens JF.	Gut Microbes	10.1080/19490976.2024.2315633	2024
Enzymology	Terrestrial sources homogenize bacterial water quality during rainfall in two urbanized watersheds in Santa Barbara, CA.	Sercu B, Van De Werfhorst LC, Murray JL, Holden PA.	Microb Ecol	10.1007/s00248-011-9874-z	2011
Metabolism	Serotonin Pathway of Tryptophan Metabolism in Small Intestinal Bacterial Overgrowth-A Pilot Study with Patients Diagnosed with Lactulose Hydrogen Breath Test and Treated with Rifaximin.	Chojnacki C, Poplawski T, Konrad P, Fila M, Chojnacki J, Blasiak J.	J Clin Med	10.3390/jcm10102065	2021
	Efficacy and Safety of Fecal Microbiota Transplantation for Clearance of Multidrug-Resistant Organisms under Multiple Comorbidities: A Prospective Comparative Trial.	Shin J, Lee JH, Park SH, Cha B, Kwon KS, Kim H, Shin YW.	Biomedicines	10.3390/biomedicines10102404	2022
	Methane and Constipation-predominant Irritable Bowel Syndrome: Entwining Pillars of Emerging Neurogastroenterology.	Bin Waqar SH, Rehan A.	Cureus	10.7759/cureus.4764	2019
	Phylogenetic diversity analysis of shotgun metagenomic reads describes gut microbiome development and treatment effects in the post-weaned pig.	Gaio D, DeMaere MZ, Anantanawat K, Eamens GJ, Falconer L, Chapman TA, Djordjevic S, Darling AE.	PLoS One	10.1371/journal.pone.0270372	2022
Pathogenicity	The antimicrobial resistance pattern of cultured human methanogens reflects the unique phylogenetic position of archaea.	Dridi B, Fardeau ML, Ollivier B, Raoult D, Drancourt M.	J Antimicrob Chemother	10.1093/jac/dkr251	2011
	Metagenomic characterization of the maternal prenatal gastrointestinal microbiome by pregravid BMI.	Dreisbach C, Alhusen J, Prescott S, Dudley D, Trinchieri G, Siega-Riz AM.	Obesity (Silver Spring)	10.1002/oby.23659	2023
	Clinical efficacy of weight loss herbal intervention therapy and lifestyle modifications on obesity and its association with distinct gut microbiome: A randomized double-blind phase 2 study.	Cao MZ, Wei CH, Wen MC, Song Y, Srivastava K, Yang N, Shi YM, Miao M, Chung D, Li XM.	Front Endocrinol (Lausanne)	10.3389/fendo.2023.1054674	2023
Genetics	Loss of microbial diversity and pathogen domination of the gut microbiota in critically ill patients.	Ravi A, Halstead FD, Bamford A, Casey A, Thomson NM, van Schaik W, Snelson C, Goulden R, Foster-Nyarko E, Savva GM, Whitehouse T, Pallen MJ, Oppenheim BA.	Microb Genom	10.1099/mgen.0.000293	2019
	Induction of Strong and Specific Humoral and T-helper 1 Cellular Responses by HBsAg Entrapped in the Methanobrevibacter smithii Archaeosomes.	Aghasadeghi MR, Delbaz SA, Sadat SM, Siadat SD, Ardestani MS, Rahimi P, Bolhassani A, Roudsari RV, Bahramali G, Motevalli F, Davari M, Vakily H, Salmani AS, Nobari MB.	Avicenna J Med Biotechnol		2014
Phylogeny	MiDAS 5: Global diversity of bacteria and archaea in anaerobic digesters.	Dueholm MKD, Andersen KS, Korntved AC, Rudkjobing V, Alves M, Bajon-Fernandez Y, Batstone D, Butler C, Cruz MC, Davidsson A, Erijman L, Holliger C, Koch K, Kreuzinger N, Lee C, Lyberatos G, Mutnuri S, O'Flaherty V, Oleskowicz-Popiel P, Pokorna D, Rajal V, Recktenwald M, Rodriguez J, Saikaly PE, Tooker N, Vierheilig J, De Vrieze J, Wurzbacher C, Nielsen PH.	Nat Commun	10.1038/s41467-024-49641-y	2024
	The Role of Gut Microbiota in the Onset and Progression of Obesity and Associated Comorbidities.	Enache RM, Profir M, Rosu OA, Cretoiu SM, Gaspar BS.	Int J Mol Sci	10.3390/ijms252212321	2024
Transcriptome	Gut metatranscriptomics based de novo assembly reveals microbial signatures predicting immunotherapy outcomes in non-small cell lung cancer.	Dora D, Kiraly P, Somodi C, Ligeti B, Dulka E, Galffy G, Lohinai Z.	J Transl Med	10.1186/s12967-024-05835-y	2024
	Maternal Consumption of Non-Nutritive Sweeteners during Pregnancy Is Associated with Alterations in the Colostrum Microbiota.	Tapia-Gonzalez A, Velez-Ixta JM, Bueno-Hernandez N, Pina-Escobedo A, Briones-Garduno JC, de la Rosa-Ruiz L, Aguayo-Guerrero J, Mendoza-Martinez VM, Snowball-Del-Pilar L, Escobedo G, Melendez-Mier G, Mendez-Garcia LA, Garcia-Mena J, Esquivel-Velazquez M.	Nutrients	10.3390/nu15234928	2023
	Features of gut microbiota in patients with anorexia nervosa.	Yuan R, Yang L, Yao G, Geng S, Ge Q, Bo S, Li X.	Chin Med J (Engl)	10.1097/cm9.0000000000002362	2022
Enzymology	Lack of correlation between enterococcal counts and the presence of human specific fecal markers in Mississippi creek and coastal waters.	Flood C, Ufnar J, Wang S, Johnson J, Carr M, Ellender R.	Water Res	10.1016/j.watres.2010.09.026	2011
Metabolism	Microbial vitamin production mediates dietary effects on diabetic risk.	Wang D, Pham VT, Steinert RE, Zhernakova A, Fu J.	Gut Microbes	10.1080/19490976.2022.2154550	2022
	Unexplored Archaeal Diversity in the Great Ape Gut Microbiome.	Raymann K, Moeller AH, Goodman AL, Ochman H.	mSphere	10.1128/msphere.00026-17	2017
	Delayed Gastric Emptying Is Not Associated with a Microbiological Diagnosis of Small Intestinal Bacterial Overgrowth.	Calderon G, Siwiec RM, Bohm ME, Nowak TV, Wo JM, Gupta A, Xu H, Shin A.	Dig Dis Sci	10.1007/s10620-020-06153-1	2021
	Limosilactobacillus reuteri in Health and Disease.	Abuqwider J, Altamimi M, Mauriello G.	Microorganisms	10.3390/microorganisms10030522	2022
Phylogeny	The Draft Genome of the Non-Host-Associated Methanobrevibacter arboriphilus Strain DH1 Encodes a Large Repertoire of Adhesin-Like Proteins.	Poehlein A, Daniel R, Seedorf H.	Archaea	10.1155/2017/4097425	2017
	Gut Colonization by Methanogenic Archaea Is Associated with Organic Dairy Consumption in Children.	van de Pol JA, van Best N, Mbakwa CA, Thijs C, Savelkoul PH, Arts IC, Hornef MW, Mommers M, Penders J.	Front Microbiol	10.3389/fmicb.2017.00355	2017
Enzymology	A semi-automated protocol for Archaea DNA extraction from stools.	Khelaifia S, Ramonet PY, Bedotto Buffet M, Drancourt M.	BMC Res Notes	10.1186/1756-0500-6-186	2013
Metabolism	Microbial equol production attenuates colonic methanogenesis and sulphidogenesis in vitro.	Bolca S, Verstraete W.	Anaerobe	10.1016/j.anaerobe.2010.03.002	2010
Metabolism	The Diversity, Composition, and Metabolic Pathways of Archaea in Pigs.	Deng F, Li Y, Peng Y, Wei X, Wang X, Howe S, Yang H, Xiao Y, Li H, Zhao J, Li Y.	Animals (Basel)	10.3390/ani11072139	2021
Pathogenicity	The Influence of Probiotic Supplementation on the Obesity Indexes, Neuroinflammatory and Oxidative Stress Markers, Gut Microbial Diversity, and Working Memory in Obese Thai Children.	Khongtan S, Sivamaruthi BS, Thangaleela S, Kesika P, Bharathi M, Sirilun S, Choeisoongnern T, Peerajan S, Sittiprapaporn P, Chaiyasut C.	Foods	10.3390/foods12213890	2023
Enzymology	Correlation between body mass index and gut concentrations of Lactobacillus reuteri, Bifidobacterium animalis, Methanobrevibacter smithii and Escherichia coli.	Million M, Angelakis E, Maraninchi M, Henry M, Giorgi R, Valero R, Vialettes B, Raoult D.	Int J Obes (Lond)	10.1038/ijo.2013.20	2013
	Screening macroalgae for mitigation of enteric methane in vitro.	Wasson DE, Stefenoni H, Cueva SF, Lage C, Raisanen SE, Melgar A, Fetter M, Hennessy M, Narayan K, Indugu N, Pitta D, Yarish C, Hristov AN.	Sci Rep	10.1038/s41598-023-36359-y	2023
	The Gut Microbiome Profile in Obesity: A Systematic Review.	Castaner O, Goday A, Park YM, Lee SH, Magkos F, Shiow STE, Schroder H.	Int J Endocrinol	10.1155/2018/4095789	2018
Phylogeny	Hybridization capture reveals microbial diversity missed using current profiling methods.	Gasc C, Peyret P.	Microbiome	10.1186/s40168-018-0442-3	2018
	Investigating Antibody Reactivity to the Intestinal Microbiome in Severe Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS): A Feasibility Study.	Seton KA, Defernez M, Telatin A, Tiwari SK, Savva GM, Hayhoe A, Noble A, de Carvalho-KoK ALS, James SA, Bansal A, Wileman T, Carding SR.	Int J Mol Sci	10.3390/ijms242015316	2023
	Fecal Microbial Diversity and Structure Are Associated with Diet Quality in the Multiethnic Cohort Adiposity Phenotype Study.	Maskarinec G, Hullar MAJ, Monroe KR, Shepherd JA, Hunt J, Randolph TW, Wilkens LR, Boushey CJ, Le Marchand L, Lim U, Lampe JW.	J Nutr	10.1093/jn/nxz065	2019
	Systematic review and meta-analysis of calculating degree of comorbidity of irritable bowel syndrome with migraine.	Todor TS, Fukudo S.	Biopsychosoc Med	10.1186/s13030-023-00275-4	2023
Pathogenicity	Abnormal weight gain and gut microbiota modifications are side effects of long-term doxycycline and hydroxychloroquine treatment.	Angelakis E, Million M, Kankoe S, Lagier JC, Armougom F, Giorgi R, Raoult D.	Antimicrob Agents Chemother	10.1128/aac.02437-14	2014
	Metagenomic analysis reveals unexplored diversity of archaeal virome in the human gut.	Li R, Wang Y, Hu H, Tan Y, Ma Y.	Nat Commun	10.1038/s41467-022-35735-y	2022
	A low FODMAP diet is associated with changes in the microbiota and reduction in breath hydrogen but not colonic volume in healthy subjects.	Sloan TJ, Jalanka J, Major GAD, Krishnasamy S, Pritchard S, Abdelrazig S, Korpela K, Singh G, Mulvenna C, Hoad CL, Marciani L, Barrett DA, Lomer MCE, de Vos WM, Gowland PA, Spiller RC.	PLoS One	10.1371/journal.pone.0201410	2018
Genetics	Acute appendicitis manifests as two microbiome state types with oral pathogens influencing severity.	Blohs M, Mahnert A, Brunnader K, Flucher C, Castellani C, Till H, Singer G, Moissl-Eichinger C.	Gut Microbes	10.1080/19490976.2022.2145845	2023
	High-throughput DNA sequencing of the moose rumen from different geographical locations reveals a core ruminal methanogenic archaeal diversity and a differential ciliate protozoal diversity.	Ishaq SL, Sundset MA, Crouse J, Wright AG.	Microb Genom	10.1099/mgen.0.000034	2015
Enzymology	Children living near a sanitary landfill have increased breath methane and Methanobrevibacter smithii in their intestinal microbiota.	de Araujo Filho HB, Carmo-Rodrigues MS, Mello CS, Melli LC, Tahan S, Pignatari AC, de Morais MB.	Archaea	10.1155/2014/576249	2014
	Molecular evaluation of the human gut methanogenic archaeal microbiota reveals an age-associated increase of the diversity.	Mihajlovski A, Dore J, Levenez F, Alric M, Brugere JF.	Environ Microbiol Rep	10.1111/j.1758-2229.2009.00116.x	2010
	The repertoire of archaea cultivated from severe periodontitis.	Huynh HT, Pignoly M, Nkamga VD, Drancourt M, Aboudharam G.	PLoS One	10.1371/journal.pone.0121565	2015
Metabolism	Research on Gut Microbiota-Derived Secondary Bile Acids in Cancer Progression.	Yang R, Qian L.	Integr Cancer Ther	10.1177/15347354221114100	2022
	Effects of cofD gene knock-out on the methanogenesis of Methanobrevibacter ruminantium.	Ma J, Wang X, Zhou T, Hu R, Zou H, Wang Z, Tan C, Zhang X, Peng Q, Xue B, Wang L.	AMB Express	10.1186/s13568-021-01236-2	2021
Enzymology	A DNA microarray for the versatile diagnosis of infectious diarrhea.	Donatin E, Buffet S, Leroy Q, Raoult D, Drancourt M.	APMIS	10.1111/apm.12081	2013
	Halophilic Archaea Halorhabdus Rudnickae and Natrinema Salaciae Activate Human Dendritic Cells and Orient T Helper Cell Responses.	Krawczyk KT, Locht C, Kowalewicz-Kulbat M.	Front Immunol	10.3389/fimmu.2022.833635	2022
Genetics	Biosynthetic potential of the gut microbiome in longevous populations.	Liu S, Zhang Z, Wang X, Ma Y, Ruan H, Wu X, Li B, Mou X, Chen T, Lu Z, Zhao W.	Gut Microbes	10.1080/19490976.2024.2426623	2024
Genetics	Alterations in the intestinal microbiome and metabolic profile of patients with cirrhosis supplemented with lactulose, Clostridium butyricum, and Bifidobacterium longum infantis: a randomized placebo-controlled trial.	Lu H, Zhu X, Wu L, Lou X, Pan X, Liu B, Zhang H, Zhu L, Li L, Wu Z.	Front Microbiol	10.3389/fmicb.2023.1169811	2023
	Associations of disordered eating with the intestinal microbiota and short-chain fatty acids among young adults with type 1 diabetes.	Igudesman D, Crandell J, Corbin KD, Zaharieva DP, Addala A, Thomas JM, Bulik CM, Pence BW, Pratley RE, Kosorok MR, Maahs DM, Carroll IM, Mayer-Davis EJ.	Nutr Metab Cardiovasc Dis	10.1016/j.numecd.2022.11.017	2023
	Peri-implantitis-associated methanogens: a preliminary report.	Belkacemi S, Mazel A, Tardivo D, Tavitian P, Stephan G, Bianca G, Terrer E, Drancourt M, Aboudharam G.	Sci Rep	10.1038/s41598-018-27862-8	2018
Genetics	Metagenomic analysis provides bases on individualized shift of colon microbiome affected by delaying colostrum feeding in neonatal calves.	Song Y, Wen S, Li F, Fischer-Tlustos A, He Z, Guan LL, Steele M.	Front Microbiol	10.3389/fmicb.2022.1035331	2022
Pathogenicity	Intestinal microbiota influences clinical outcome and side effects of early breast cancer treatment.	Terrisse S, Derosa L, Iebba V, Ghiringhelli F, Vaz-Luis I, Kroemer G, Fidelle M, Christodoulidis S, Segata N, Thomas AM, Martin AL, Sirven A, Everhard S, Aprahamian F, Nirmalathasan N, Aarnoutse R, Smidt M, Ziemons J, Caldas C, Loibl S, Denkert C, Durand S, Iglesias C, Pietrantonio F, Routy B, Andre F, Pasolli E, Delaloge S, Zitvogel L.	Cell Death Differ	10.1038/s41418-021-00784-1	2021
Biotechnology	Quantitative Analysis of Core Lipid Production in Methanothermobacter marburgensis at Different Scales.	Baumann LMF, Taubner RS, Olah K, Rohrweber AC, Schuster B, Birgel D, Rittmann SKR.	Bioengineering (Basel)	10.3390/bioengineering9040169	2022
Metabolism	Histone variants in archaea and the evolution of combinatorial chromatin complexity.	Stevens KM, Swadling JB, Hocher A, Bang C, Gribaldo S, Schmitz RA, Warnecke T.	Proc Natl Acad Sci U S A	10.1073/pnas.2007056117	2020
	Ethnic variations in metabolic syndrome components and their associations with the gut microbiota: the HELIUS study.	Balvers M, de Goffau M, van Riel N, van den Born BJ, Galenkamp H, Zwinderman K, Nieuwdorp M, Levin E.	Genome Med	10.1186/s13073-024-01295-7	2024
Phylogeny	Functional eubacteria species along with trans-domain gut inhabitants favour dysgenic diversity in oxalate stone disease.	Suryavanshi MV, Bhute SS, Gune RP, Shouche YS.	Sci Rep	10.1038/s41598-018-33773-5	2018
	Lactobacillus reuteri DSM 17938 and Agave Inulin in Children with Cerebral Palsy and Chronic Constipation: A Double-Blind Randomized Placebo Controlled Clinical Trial.	Garcia Contreras AA, Vasquez Garibay EM, Sanchez Ramirez CA, Fafutis Morris M, Delgado Rizo V.	Nutrients	10.3390/nu12102971	2020
	Gut bacterial microbiota in patients with myasthenia gravis: results from the MYBIOM study.	Totzeck A, Ramakrishnan E, Schlag M, Stolte B, Kizina K, Bolz S, Thimm A, Stettner M, Marchesi JR, Buer J, Kleinschnitz C, Verhasselt HL, Hagenacker T.	Ther Adv Neurol Disord	10.1177/17562864211035657	2021
	Relationship between Nutrient Intake and Human Gut Microbiota in Monozygotic Twins.	Matsumoto N, Park J, Tomizawa R, Kawashima H, Hosomi K, Mizuguchi K, Honda C, Ozaki R, Iwatani Y, Watanabe M, Kunisawa J.	Medicina (Kaunas)	10.3390/medicina57030275	2021
Pathogenicity	A versatile medium for cultivating methanogenic archaea.	Khelaifia S, Raoult D, Drancourt M.	PLoS One	10.1371/journal.pone.0061563	2013
Genetics	Comprehensive lung microbial gene and genome catalogs assist the mechanism survey of Mesomycoplasma hyopneumoniae strains causing pig lung lesions.	Li J, Huang F, Zhou Y, Huang T, Tong X, Zhang M, Chen J, Zhang Z, Du H, Liu Z, Zhou M, Xiahou Y, Ai H, Chen C, Huang L.	Imeta	10.1002/imt2.258	2024
Metabolism	Akkermansia, a Possible Microbial Marker for Poor Glycemic Control in Qataris Children Consuming Arabic Diet-A Pilot Study on Pediatric T1DM in Qatar.	Lakshmanan AP, Kohil A, El Assadi F, Al Zaidan S, Al Abduljabbar S, Bangarusamy DK, Al Khalaf F, Petrovski G, Terranegra A.	Nutrients	10.3390/nu13030836	2021
	Breath methane to hydrogen ratio as a surrogate marker of intestinal dysbiosis in head and neck cancer.	Dharmawardana N, Goddard T, Woods C, Watson DI, Butler R, Ooi EH, Yazbeck R.	Sci Rep	10.1038/s41598-020-72115-2	2020
Enzymology	Ketonuria Is Associated with Changes to the Abundance of Roseburia in the Gut Microbiota of Overweight and Obese Women at 16 Weeks Gestation: A Cross-Sectional Observational Study.	Robinson H, Barrett H, Gomez-Arango L, McIntyre HD, Callaway L, Dekker Nitert M.	Nutrients	10.3390/nu11081836	2019
	Fiber Consumption Mediates Differences in Several Gut Microbes in a Subpopulation of Young Mexican Adults.	Rodriguez-Lara A, Plaza-Diaz J, Lopez-Uriarte P, Vazquez-Aguilar A, Reyes-Castillo Z, Alvarez-Mercado AI.	Nutrients	10.3390/nu14061214	2022
	Exhaled Hydrogen as a Marker of Intestinal Fermentation Is Associated with Diarrhea in Kidney Transplant Recipients.	Rodrigues FG, Swarte JC, Douwes RM, Knobbe TJ, Sotomayor CG, Blokzijl H, Weersma RK, Heilberg IP, Bakker SJL, de Borst MH, TransplantLines Investigators.	J Clin Med	10.3390/jcm10132854	2021
	Microbial dysbiosis in irritable bowel syndrome: A single-center metagenomic study in Saudi Arabia.	Masoodi I, Alshanqeeti AS, Alyamani EJ, AlLehibi AA, Alqutub AN, Alsayari KN, Alomair AO.	JGH Open	10.1002/jgh3.12313	2020
Genetics	Metagenomic Analyses of Multiple Gut Datasets Revealed the Association of Phage Signatures in Colorectal Cancer.	Zuo W, Michail S, Sun F.	Front Cell Infect Microbiol	10.3389/fcimb.2022.918010	2022
	Methanosphaera stadtmanae induces a type IV hypersensitivity response in a mouse model of airway inflammation.	Bernatchez E, Gold MJ, Langlois A, Blais-Lecours P, Boucher M, Duchaine C, Marsolais D, McNagny KM, Blanchet MR.	Physiol Rep	10.14814/phy2.13163	2017
	Radical-Driven Methane Formation in Humans Evidenced by Exogenous Isotope-Labeled DMSO and Methionine.	Keppler F, Boros M, Polag D.	Antioxidants (Basel)	10.3390/antiox12071381	2023
Phylogeny	A putative new order of methanogenic Archaea inhabiting the human gut, as revealed by molecular analyses of the mcrA gene.	Mihajlovski A, Alric M, Brugere JF.	Res Microbiol	10.1016/j.resmic.2008.06.007	2008
	Detection of the nifH gene of Methanobrevibacter smithii: a potential tool to identify sewage pollution in recreational waters.	Ufnar JA, Wang SY, Christiansen JM, Yampara-Iquise H, Carson CA, Ellender RD.	J Appl Microbiol	10.1111/j.1365-2672.2006.02989.x	2006
	Specific gut bacterial and fungal microbiota pattern in the first half of pregnancy is linked to the development of gestational diabetes mellitus in the cohort including obese women.	Vavreckova M, Galanova N, Kostovcik M, Krystynik O, Ivanovova E, Roubalova R, Jiraskova Zakostelska Z, Friedecky D, Friedecka J, Haluzik M, Karasek D, Kostovcikova K.	Front Endocrinol (Lausanne)	10.3389/fendo.2022.970825	2022
	Potential of Akkermansia muciniphila and its outer membrane proteins as therapeutic targets for neuropsychological diseases.	Zhang F, Wang D.	Front Microbiol	10.3389/fmicb.2023.1191445	2023
Metabolism	Differences in the rumen methanogen populations of lactating Jersey and Holstein dairy cows under the same diet regimen.	King EE, Smith RP, St-Pierre B, Wright AD.	Appl Environ Microbiol	10.1128/aem.05130-11	2011
	Is the Impact of Starvation on the Gut Microbiota Specific or Unspecific to Anorexia Nervosa? A Narrative Review Based on a Systematic Literature Search.	Mack I, Penders J, Cook J, Dugmore J, Mazurak N, Enck P.	Curr Neuropharmacol	10.2174/1570159x16666180118101354	2018
Phylogeny	Managing Contamination and Diverse Bacterial Loads in 16S rRNA Deep Sequencing of Clinical Samples: Implications of the Law of Small Numbers.	Dyrhovden R, Rippin M, Ovrebo KK, Nygaard RM, Ulvestad E, Kommedal O.	mBio	10.1128/mbio.00598-21	2021
Enzymology	Validation and field testing of library-independent microbial source tracking methods in the Gulf of Mexico.	Harwood VJ, Brownell M, Wang S, Lepo J, Ellender RD, Ajidahun A, Hellein KN, Kennedy E, Ye X, Flood C.	Water Res	10.1016/j.watres.2009.06.029	2009
	A Non-Invasive Neonatal Signature Predicts Later Development of Atopic Diseases.	Sereme Y, Michel M, Mezouar S, Guindo CO, Kaba L, Grine G, Mura T, Mege JL, Tran TA, Corbeau P, Filleron A, Vitte J.	J Clin Med	10.3390/jcm11102749	2022
	Methane and hydrogen positivity on breath test is associated with greater body mass index and body fat.	Mathur R, Amichai M, Chua KS, Mirocha J, Barlow GM, Pimentel M.	J Clin Endocrinol Metab	10.1210/jc.2012-3144	2013
Phylogeny	T-RFLP-based mcrA gene analysis of methanogenic archaea in association with oral infections and evidence of a novel Methanobrevibacter phylotype.	Vianna ME, Conrads G, Gomes BP, Horz HP.	Oral Microbiol Immunol	10.1111/j.1399-302x.2009.00539.x	2009
	Meta-analysis reveals obesity associated gut microbial alteration patterns and reproducible contributors of functional shift.	Chanda D, De D.	Gut Microbes	10.1080/19490976.2024.2304900	2024
	Evolution of Intestinal Gases and Fecal Short-Chain Fatty Acids Produced in vitro by Preterm Infant Gut Microbiota During the First 4 Weeks of Life.	Wang X, Li J, Li N, Guan K, Yin D, Zhang H, Ding G, Hu Y.	Front Pediatr	10.3389/fped.2021.726193	2021
	TMAO as a potential biomarker and therapeutic target for chronic kidney disease: A review.	Zixin Y, Lulu C, Xiangchang Z, Qing F, Binjie Z, Chunyang L, Tai R, Dongsheng O.	Front Pharmacol	10.3389/fphar.2022.929262	2022
Metabolism	Degradation enhancement of rice straw by co-culture of Phanerochaete chrysosporium and Trichoderma viride.	Chen KJ, Tang JC, Xu BH, Lan SL, Cao Y.	Sci Rep	10.1038/s41598-019-56123-5	2019
Enzymology	Archaea and Bacteria Exposure in Danish Livestock Farmers.	Bonlokke JH, Duchaine C, Schlunssen V, Sigsgaard T, Veillette M, Basinas I.	Ann Work Expo Health	10.1093/annweh/wxz058	2019
	Canine Mucosal Artificial Colon: development of a new colonic in vitro model adapted to dog sizes.	Deschamps C, Denis S, Humbert D, Priymenko N, Chalancon S, De Bodt J, Van de Wiele T, Ipharraguerre I, Alvarez-Acero I, Achard C, Apper E, Blanquet-Diot S.	Appl Microbiol Biotechnol	10.1007/s00253-023-12987-2	2024
	Perturbed gut microbiome and fecal and serum metabolomes are associated with chronic kidney disease severity.	Wang H, Ainiwaer A, Song Y, Qin L, Peng A, Bao H, Qin H.	Microbiome	10.1186/s40168-022-01443-4	2023
	Diversity and community pattern of sulfate-reducing bacteria in piglet gut.	Ran S, Mu C, Zhu W.	J Anim Sci Biotechnol	10.1186/s40104-019-0346-5	2019
	The effects of feeding ferric citrate on ruminal bacteria, methanogenic archaea and methane production in growing beef steers.	Clemmons BA, Schneider LG, Melchior EA, Lindholm-Perry AK, Hales KE, Wells JE, Freetly HC, Hansen SL, Drewnoski ME, Hartman SJ, Myer PR.	Access Microbiol	10.1099/acmi.0.000180	2021
	Dietary High Zinc Oxide Modulates the Microbiome of Ileum and Colon in Weaned Piglets.	Yu T, Zhu C, Chen S, Gao L, Lv H, Feng R, Zhu Q, Xu J, Chen Z, Jiang Z.	Front Microbiol	10.3389/fmicb.2017.00825	2017
Pathogenicity	Resistant starch and the gut microbiome: Exploring beneficial interactions and dietary impacts.	Chen Z, Liang N, Zhang H, Li H, Guo J, Zhang Y, Chen Y, Wang Y, Shi N.	Food Chem X	10.1016/j.fochx.2024.101118	2024
	Systematic Review: The Gut Microbiome and Its Potential Clinical Application in Inflammatory Bowel Disease.	Aldars-Garcia L, Chaparro M, Gisbert JP.	Microorganisms	10.3390/microorganisms9050977	2021
Pathogenicity	Development of an Index Score for Intestinal Inflammation-Associated Dysbiosis Using Real-World Stool Test Results.	Chen L, Reynolds C, David R, Peace Brewer A.	Dig Dis Sci	10.1007/s10620-019-05828-8	2020
	Breath methane concentrations and markers of obesity in patients with functional gastrointestinal disorders.	Wilder-Smith CH, Olesen SS, Materna A, Drewes AM.	United European Gastroenterol J	10.1177/2050640617744457	2018
	Human gut metatranscriptome changes induced by a fermented milk product are associated with improved tolerance to a flatulogenic diet.	Oyarzun I, Le Neve B, Yanez F, Xie Z, Pichaud M, Serrano-Gomez G, Roca J, Veiga P, Azpiroz F, Tap J, Manichanh C.	Comput Struct Biotechnol J	10.1016/j.csbj.2022.04.001	2022
	Metagenomic analysis of the interaction between the gut microbiota and colorectal cancer: a paired-sample study based on the GMrepo database.	Chen H, Jiao J, Wei M, Jiang X, Yang R, Yu X, Zhang G, Zhou X.	Gut Pathog	10.1186/s13099-022-00527-8	2022
	Archaeosome adjuvants: immunological capabilities and mechanism(s) of action.	Krishnan L, Sprott GD.	Vaccine	10.1016/j.vaccine.2008.02.026	2008
Genetics	Connections between the human gut microbiome and gestational diabetes mellitus.	Kuang YS, Lu JH, Li SH, Li JH, Yuan MY, He JR, Chen NN, Xiao WQ, Shen SY, Qiu L, Wu YF, Hu CY, Wu YY, Li WD, Chen QZ, Deng HW, Papasian CJ, Xia HM, Qiu X.	Gigascience	10.1093/gigascience/gix058	2017
Genetics	PyDamage: automated ancient damage identification and estimation for contigs in ancient DNA de novo assembly.	Borry M, Hubner A, Rohrlach AB, Warinner C.	PeerJ	10.7717/peerj.11845	2021
	Deciphering the Urinary Microbiota Repertoire by Culturomics Reveals Mostly Anaerobic Bacteria From the Gut.	Dubourg G, Morand A, Mekhalif F, Godefroy R, Corthier A, Yacouba A, Diakite A, Cornu F, Cresci M, Brahimi S, Caputo A, Lechevallier E, Tsimaratos M, Moal V, Lagier JC, Raoult D.	Front Microbiol	10.3389/fmicb.2020.513305	2020
	Characterisation of gut microbiota of obesity and type 2 diabetes in a rodent model.	Ibrahim KS, Bourwis N, Dolan S, Lang S, Spencer J, Craft JA.	Biosci Microbiota Food Health	10.12938/bmfh.2019-031	2021
	Culturomics Discloses Anti-Tubercular Enterococci Exclusive of Pulmonary Tuberculosis: A Preliminary Report.	Fellag M, Gouba N, Bedotto M, Sakana M, Zingue D, Tarnagda Z, Million M, Drancourt M.	Microorganisms	10.3390/microorganisms8101544	2020
Metabolism	Volatilisation of metals and metalloids: an inherent feature of methanoarchaea?	Meyer J, Michalke K, Kouril T, Hensel R.	Syst Appl Microbiol	10.1016/j.syapm.2008.02.001	2008
Biotechnology	Characterization of the Pig Gut Microbiome and Antibiotic Resistome in Industrialized Feedlots in China.	Wang C, Li P, Yan Q, Chen L, Li T, Zhang W, Li H, Chen C, Han X, Zhang S, Xu M, Li B, Zhang X, Ni H, Ma Y, Dong B, Li S, Liu S.	mSystems	10.1128/msystems.00206-19	2019
	Safety of intranasally administered archaeal lipid mucosal vaccine adjuvant and delivery (AMVAD) vaccine in mice.	Patel GB, Ponce A, Zhou H, Chen W.	Int J Toxicol	10.1080/10915810802352703	2008
Genetics	Shotgun Metagenomics of Gut Microbiota in Humans with up to Extreme Longevity and the Increasing Role of Xenobiotic Degradation.	Rampelli S, Soverini M, D'Amico F, Barone M, Tavella T, Monti D, Capri M, Astolfi A, Brigidi P, Biagi E, Franceschi C, Turroni S, Candela M.	mSystems	10.1128/msystems.00124-20	2020
Enzymology	Development of methods for the detection and quantification of 7alpha-dehydroxylating clostridia, Desulfovibrio vulgaris, Methanobrevibacter smithii, and Lactobacillus plantarum in human feces.	Ridlon JM, McGarr SE, Hylemon PB.	Clin Chim Acta	10.1016/j.cccn.2005.02.004	2005
	Weighted Gene Co-Expression Network Analysis Identifies a Functional Guild and Metabolite Cluster Mediating the Relationship between Mucosal Inflammation and Adherence to the Mediterranean Diet in Ulcerative Colitis.	Strauss JC, Haskey N, Ramay HR, Ghosh TS, Taylor LM, Yousuf M, Ohland C, McCoy KD, Ingram RJM, Ghosh S, Panaccione R, Raman M.	Int J Mol Sci	10.3390/ijms24087323	2023
Metabolism	Effects of Bacterial CLPB Protein Fragments on Food Intake and PYY Secretion.	Dominique M, Lucas N, Legrand R, Boulete IM, Bole-Feysot C, Deroissart C, Leon F, Nobis S, do Rego JC, Lambert G, Dechelotte P.	Nutrients	10.3390/nu13072223	2021
Metabolism	Evidence of increased diversity of methanogenic archaea with plant extract supplementation.	Ohene-Adjei S, Chaves AV, McAllister TA, Benchaar C, Teather RM, Forster RJ.	Microb Ecol	10.1007/s00248-007-9340-0	2008
	Effects of the probiotic Lactiplantibacillus plantarum IMC 510® on body composition, biochemical parameters, gut microbiota composition and function, and clinical symptoms of overweight/obese subjects.	Pagliai G, Coman MM, Baldi S, Dinu M, Nannini G, Russo E, Curini L, Colombini B, Lotti S, Pallecchi M, Di Gloria L, Bartolucci G, Ramazzotti M, Verdenelli MC, Sofi F, Amedei A.	Front Nutr	10.3389/fnut.2023.1142527	2023
	Taxonomic Characterization and Short-Chain Fatty Acids Production of the Obese Microbiota.	Martinez-Cuesta MC, Del Campo R, Garriga-Garcia M, Pelaez C, Requena T.	Front Cell Infect Microbiol	10.3389/fcimb.2021.598093	2021
Pathogenicity	The archaeome in metaorganism research, with a focus on marine models and their bacteria-archaea interactions.	von Hoyningen-Huene AJE, Bang C, Rausch P, Ruhlemann M, Fokt H, He J, Jensen N, Knop M, Petersen C, Schmittmann L, Zimmer T, Baines JF, Bosch TCG, Hentschel U, Reusch TBH, Roeder T, Franke A, Schulenburg H, Stukenbrock E, Schmitz RA.	Front Microbiol	10.3389/fmicb.2024.1347422	2024
Genetics	Culture- and metagenomics-enabled analyses of the Methanosphaera genus reveals their monophyletic origin and differentiation according to genome size.	Hoedt EC, Parks DH, Volmer JG, Rosewarne CP, Denman SE, McSweeney CS, Muir JG, Gibson PR, Cuiv PO, Hugenholtz P, Tyson GW, Morrison M.	ISME J	10.1038/s41396-018-0225-7	2018
Phylogeny	The Modulation of Gut Microbiota Composition in the Pathophysiology of Gestational Diabetes Mellitus: A Systematic Review.	Kunasegaran T, Balasubramaniam VRMT, Arasoo VJT, Palanisamy UD, Ramadas A.	Biology (Basel)	10.3390/biology10101027	2021
Metabolism	Formate oxidation in the intestinal mucus layer enhances fitness of Salmonella enterica serovar Typhimurium.	Winter MG, Hughes ER, Muramatsu MK, Jimenez AG, Chanin RB, Spiga L, Gillis CC, McClelland M, Andrews-Polymenis H, Winter SE.	mBio	10.1128/mbio.00921-23	2023
	Cross-feeding in the gut microbiome: Ecology and mechanisms.	Culp EJ, Goodman AL.	Cell Host Microbe	10.1016/j.chom.2023.03.016	2023
	Gut Microbiota and Short-Chain Fatty Acid Profile between Normal and Moderate Malnutrition Children in Yogyakarta, Indonesia.	Kamil RZ, Murdiati A, Juffrie M, Nakayama J, Rahayu ES.	Microorganisms	10.3390/microorganisms9010127	2021
	A causal effects of gut microbiota in the development of migraine.	He Q, Wang W, Xiong Y, Tao C, Ma L, Ma J, You C, International Headache Genetics Consortium.	J Headache Pain	10.1186/s10194-023-01609-x	2023
Enzymology	Obesity-associated gut microbiota is enriched in Lactobacillus reuteri and depleted in Bifidobacterium animalis and Methanobrevibacter smithii.	Million M, Maraninchi M, Henry M, Armougom F, Richet H, Carrieri P, Valero R, Raccah D, Vialettes B, Raoult D.	Int J Obes (Lond)	10.1038/ijo.2011.153	2012
Phylogeny	Glyphosate and its formulations Roundup Bioflow and RangerPro alter bacterial and fungal community composition in the rat caecum microbiome.	Mesnage R, Panzacchi S, Bourne E, Mein CA, Perry MJ, Hu J, Chen J, Mandrioli D, Belpoggi F, Antoniou MN.	Front Microbiol	10.3389/fmicb.2022.888853	2022
Phylogeny	Sub-clinical detection of gut microbial biomarkers of obesity and type 2 diabetes.	Yassour M, Lim MY, Yun HS, Tickle TL, Sung J, Song YM, Lee K, Franzosa EA, Morgan XC, Gevers D, Lander ES, Xavier RJ, Birren BW, Ko G, Huttenhower C.	Genome Med	10.1186/s13073-016-0271-6	2016
Genetics	Variations in the Relative Abundance of Gut Bacteria Correlate with Lipid Profiles in Healthy Adults.	Kalnina I, Gudra D, Silamikelis I, Viksne K, Roga A, Skinderskis E, Fridmanis D, Klovins J.	Microorganisms	10.3390/microorganisms11112656	2023
Enzymology	Optimized microbial DNA extraction from diarrheic stools.	Donatin E, Drancourt M.	BMC Res Notes	10.1186/1756-0500-5-702	2012
Genetics	HumanMycobiomeScan: a new bioinformatics tool for the characterization of the fungal fraction in metagenomic samples.	Soverini M, Turroni S, Biagi E, Brigidi P, Candela M, Rampelli S.	BMC Genomics	10.1186/s12864-019-5883-y	2019
Genetics	MetaBMF: a scalable binning algorithm for large-scale reference-free metagenomic studies.	Ma T, Xiao D, Xing X.	Bioinformatics	10.1093/bioinformatics/btz577	2020
	The Hypersaline Archaeal Histones HpyA and HstA Are DNA Binding Proteins That Defy Categorization According to Commonly Used Functional Criteria.	Sakrikar S, Hackley RK, Martinez-Pastor M, Darnell CL, Vreugdenhil A, Schmid AK.	mBio	10.1128/mbio.03449-22	2023
	Rhubarb Enema Decreases Circulating Trimethylamine N-Oxide Level and Improves Renal Fibrosis Accompanied With Gut Microbiota Change in Chronic Kidney Disease Rats.	Ji C, Li Y, Mo Y, Lu Z, Lu F, Lin Q, Liu X, Zou C, Wu Y.	Front Pharmacol	10.3389/fphar.2021.780924	2021
Metabolism	Metabolic effects of eradicating breath methane using antibiotics in prediabetic subjects with obesity.	Mathur R, Chua KS, Mamelak M, Morales W, Barlow GM, Thomas R, Stefanovski D, Weitsman S, Marsh Z, Bergman RN, Pimentel M.	Obesity (Silver Spring)	10.1002/oby.21385	2016
	Short-Chain Fatty Acids Modulate Healthy Gut Microbiota Composition and Functional Potential.	Peterson CT, Perez Santiago J, Iablokov SN, Chopra D, Rodionov DA, Peterson SN.	Curr Microbiol	10.1007/s00284-022-02825-5	2022
Pathogenicity	In-vitro archaeacidal activity of biocides against human-associated archaea.	Khelaifia S, Brunel JM, Drancourt M.	PLoS One	10.1371/journal.pone.0062738	2013
	Clinical response and changes in the fecal microbiota and metabolite levels after fecal microbiota transplantation in patients with inflammatory bowel disease and recurrent Clostridioides difficile infection.	Osaki H, Jodai Y, Koyama K, Omori T, Horiguchi N, Kamano T, Funasaka K, Nagasaka M, Nakagawa Y, Shibata T, Ohmiya N.	Fujita Med J	10.20407/fmj.2020-021	2021
Biotechnology	Tailored Nanoparticles With the Potential to Reduce Ruminant Methane Emissions.	Altermann E, Reilly K, Young W, Ronimus RS, Muetzel S.	Front Microbiol	10.3389/fmicb.2022.816695	2022
	Homemade Elemental Diet to Treat Intestinal Methanogen Overgrowth: A Case Report.	O'Dwyer D.	Integr Med (Encinitas)		2021
	Effect of Long-Term Supplementation With Silkworm Pupae Oil on the Methane Yield, Ruminal Protozoa, and Archaea Community in Sheep.	Thirumalaisamy G, Malik PK, Trivedi S, Kolte AP, Bhatta R.	Front Microbiol	10.3389/fmicb.2022.780073	2022
Metabolism	Influence of sire breed on the interplay among rumen microbial populations inhabiting the rumen liquid of the progeny in beef cattle.	Hernandez-Sanabria E, Goonewardene LA, Wang Z, Zhou M, Moore SS, Guan LL.	PLoS One	10.1371/journal.pone.0058461	2013
Metabolism	Characterization of variation in rumen methanogenic communities under different dietary and host feed efficiency conditions, as determined by PCR-denaturing gradient gel electrophoresis analysis.	Zhou M, Hernandez-Sanabria E, Guan LL.	Appl Environ Microbiol	10.1128/aem.00010-10	2010
Metabolism	The rumen microbial metaproteome as revealed by SDS-PAGE.	Snelling TJ, Wallace RJ.	BMC Microbiol	10.1186/s12866-016-0917-y	2017
	How does age determine the development of human immune-mediated arthritis?	Degboe Y, Vastert SJ, Prakken BJ, McInnes IB.	Nat Rev Rheumatol	10.1038/s41584-022-00814-3	2022
	Improving Nutritive Value of Purple Field Corn Residue and Rice Straw by Culturing with White-Rot Fungi.	Khonkhaeng B, Cherdthong A.	J Fungi (Basel)	10.3390/jof6020069	2020
	Alterations of the human gut microbiome in multiple sclerosis.	Jangi S, Gandhi R, Cox LM, Li N, von Glehn F, Yan R, Patel B, Mazzola MA, Liu S, Glanz BL, Cook S, Tankou S, Stuart F, Melo K, Nejad P, Smith K, Topcuolu BD, Holden J, Kivisakk P, Chitnis T, De Jager PL, Quintana FJ, Gerber GK, Bry L, Weiner HL.	Nat Commun	10.1038/ncomms12015	2016
	Interactions between Anaerobic Fungi and Methanogens in the Rumen and Their Biotechnological Potential in Biogas Production from Lignocellulosic Materials.	Li Y, Meng Z, Xu Y, Shi Q, Ma Y, Aung M, Cheng Y, Zhu W.	Microorganisms	10.3390/microorganisms9010190	2021
	The role of small intestinal bacterial overgrowth and false positive diagnosis of lactose intolerance in southwest Hungary-A retrospective observational study.	Varju P, Ystad B, Gede N, Hegyi P, Pecsi D, Czimmer J.	PLoS One	10.1371/journal.pone.0230784	2020
	Epigenetics in depression and gut-brain axis: A molecular crosstalk.	Begum N, Mandhare A, Tryphena KP, Srivastava S, Shaikh MF, Singh SB, Khatri DK.	Front Aging Neurosci	10.3389/fnagi.2022.1048333	2022
	Insights into the Mechanisms That May Clarify Obesity as a Risk Factor for Multiple Sclerosis.	Huitema MJD, Schenk GJ.	Curr Neurol Neurosci Rep	10.1007/s11910-018-0827-5	2018
	Functional diversity of nanohaloarchaea within xylan-degrading consortia.	Reva O, Messina E, La Cono V, Crisafi F, Smedile F, La Spada G, Marturano L, Selivanova EA, Rohde M, Krupovic M, Yakimov MM.	Front Microbiol	10.3389/fmicb.2023.1182464	2023
	Metabolic Modeling to Interrogate Microbial Disease: A Tale for Experimentalists.	Jean-Pierre F, Henson MA, O'Toole GA.	Front Mol Biosci	10.3389/fmolb.2021.634479	2021
	A systematic review on the role of microbiota in the pathogenesis and treatment of eating disorders.	Carbone EA, D'Amato P, Vicchio G, De Fazio P, Segura-Garcia C.	Eur Psychiatry	10.1192/j.eurpsy.2020.109	2020
Pathogenicity	Persistent Legionnaires' Disease and Associated Antibiotic Treatment Engender a Highly Disturbed Pulmonary Microbiome Enriched in Opportunistic Microorganisms.	Perez-Cobas AE, Ginevra C, Rusniok C, Jarraud S, Buchrieser C.	mBio	10.1128/mbio.00889-20	2020
	Early Dietary Patterns and Microbiota Development: Still a Way to Go from Descriptive Interactions to Health-Relevant Solutions.	Iozzo P, Sanguinetti E.	Front Nutr	10.3389/fnut.2018.00005	2018
Pathogenicity	The Gut Microbiome, Aging, and Longevity: A Systematic Review.	Badal VD, Vaccariello ED, Murray ER, Yu KE, Knight R, Jeste DV, Nguyen TT.	Nutrients	10.3390/nu12123759	2020
	Gut microbiome transitions across generations in different ethnicities in an urban setting-the HELIUS study.	van der Vossen EWJ, Davids M, Bresser LRF, Galenkamp H, van den Born BH, Zwinderman AH, Levin E, Nieuwdorp M, de Goffau MC.	Microbiome	10.1186/s40168-023-01488-z	2023
Genetics	Short Chain Fatty Acid Metabolism in Relation to Gut Microbiota and Genetic Variability.	Ramos Meyers G, Samouda H, Bohn T.	Nutrients	10.3390/nu14245361	2022
Metabolism	H2 and acetate transfers during xylan fermentation between a butyrate-producing xylanolytic species and hydrogenotrophic microorganisms from the human gut.	Chassard C, Bernalier-Donadille A.	FEMS Microbiol Lett	10.1111/j.1574-6968.2005.00016.x	2006
Metabolism	Relationships between anaerobic consortia and removal efficiencies in an UASB reactor degrading 2,4 dichlorophenol (DCP).	Sponza DT, Cigal C.	J Environ Manage	10.1016/j.jenvman.2007.01.034	2008
Genetics	Positive Synergistic Effects of Quercetin and Rice Bran on Human Gut Microbiota Reduces Enterobacteriaceae Family Abundance and Elevates Propionate in a Bioreactor Model.	Ghimire S, Wongkuna S, Sankaranarayanan R, Ryan EP, Bhat GJ, Scaria J.	Front Microbiol	10.3389/fmicb.2021.751225	2021
Pathogenicity	Microbiome Dysbiosis: A Pathological Mechanism at the Intersection of Obesity and Glaucoma.	Pezzino S, Sofia M, Greco LP, Litrico G, Filippello G, Sarva I, La Greca G, Latteri S.	Int J Mol Sci	10.3390/ijms24021166	2023
Phylogeny	Analysis of methanogen diversity in the rumen using temporal temperature gradient gel electrophoresis: identification of uncultured methanogens.	Nicholson MJ, Evans PN, Joblin KN.	Microb Ecol	10.1007/s00248-006-9182-1	2007
	Microbiota Composition and Functional Profiling Throughout the Gastrointestinal Tract of Commercial Weaning Piglets.	Gresse R, Chaucheyras Durand F, Duniere L, Blanquet-Diot S, Forano E.	Microorganisms	10.3390/microorganisms7090343	2019
	Perspective: Assessing Tolerance to Nondigestible Carbohydrate Consumption.	Holscher HD, Chumpitazi BP, Dahl WJ, Fahey GC, Liska DJ, Slavin JL, Verbeke K.	Adv Nutr	10.1093/advances/nmac091	2022
	Metagenomic Analysis of the Pediatric-Onset Multiple Sclerosis Gut Microbiome.	Mirza AI, Zhu F, Knox N, Forbes JD, Van Domselaar G, Bernstein CN, Graham M, Marrie RA, Hart J, Yeh EA, Arnold DL, Bar-Or A, O'Mahony J, Zhao Y, Hsiao W, Banwell B, Waubant E, Tremlett H.	Neurology	10.1212/wnl.0000000000013245	2022
	Preliminary studies demonstrating acetoclastic methanogenesis in a rat colonic ring model.	Carter EA, Barr RG.	J Nutr Metab	10.1155/2013/540967	2013
Genetics	The gut microbiome of healthy Japanese and its microbial and functional uniqueness.	Nishijima S, Suda W, Oshima K, Kim SW, Hirose Y, Morita H, Hattori M.	DNA Res	10.1093/dnares/dsw002	2016
	Sulfated archaeal glycolipid archaeosomes as a safe and effective vaccine adjuvant for induction of cell-mediated immunity.	McCluskie MJ, Deschatelets L, Krishnan L.	Hum Vaccin Immunother	10.1080/21645515.2017.1316912	2017
	The Connection Between Physical Exercise and Gut Microbiota: Implications for Competitive Sports Athletes.	Wegierska AE, Charitos IA, Topi S, Potenza MA, Montagnani M, Santacroce L.	Sports Med	10.1007/s40279-022-01696-x	2022
	Narrative Review: Advancing Dysbiosis Treatment in Onco-Hematology with Microbiome-Based Therapeutic Approach.	Biennier S, Fontaine M, Duquenoy A, Schwintner C, Dore J, Corvaia N.	Microorganisms	10.3390/microorganisms12112256	2024
Phylogeny	Toward the identification of methanogenic archaeal groups as targets of methane mitigation in livestock animalsr.	St-Pierre B, Cersosimo LM, Ishaq SL, Wright AD.	Front Microbiol	10.3389/fmicb.2015.00776	2015
Phylogeny	MaLiAmPi enables generalizable and taxonomy-independent microbiome features from technically diverse 16S-based microbiome studies.	Minot SS, Garb B, Roldan A, Tang AS, Oskotsky TT, Rosenthal C, Hoffman NG, Sirota M, Golob JL.	Cell Rep Methods	10.1016/j.crmeth.2023.100639	2023
	Methanobrevibacter oralis: a comprehensive review.	Pilliol V, Mahmoud Abdelwadoud B, Aicha H, Lucille T, Gerard A, Herve T, Michel D, Ghiles G, Elodie T.	J Oral Microbiol	10.1080/20002297.2024.2415734	2024
Genetics	A Catalog of over 5,000 Metagenome-Assembled Microbial Genomes from the Caprinae Gut Microbiota.	Zhang XX, Lv QB, Yan QL, Zhang Y, Guo RC, Meng JX, Ma H, Qin SY, Zhu QH, Li CQ, Liu R, Liu G, Li SH, Sun DB, Ni HB.	Microbiol Spectr	10.1128/spectrum.02211-22	2022
Genetics	Vaginal Microbiota Changes During Estrous Cycle in Dairy Heifers.	Quereda JJ, Barba M, Moce ML, Gomis J, Jimenez-Trigos E, Garcia-Munoz A, Gomez-Martin A, Gonzalez-Torres P, Carbonetto B, Garcia-Rosello E.	Front Vet Sci	10.3389/fvets.2020.00371	2020
Enzymology	Increased prevalence of Methanosphaera stadtmanae in inflammatory bowel diseases.	Blais Lecours P, Marsolais D, Cormier Y, Berberi M, Hache C, Bourdages R, Duchaine C.	PLoS One	10.1371/journal.pone.0087734	2014
Genetics	Using genome comparisons of wild-type and resistant mutants of Methanococcus maripaludis to help understand mechanisms of resistance to methane inhibitors.	Long F, Cheung CY, Whitman WB, Cook GM, Ronimus RS.	Access Microbiol	10.1099/acmi.0.000244	2021
	Rapid clonal expansion and prolonged maintenance of memory CD8+ T cells of the effector (CD44highCD62Llow) and central (CD44highCD62Lhigh) phenotype by an archaeosome adjuvant independent of TLR2.	Krishnan L, Gurnani K, Dicaire CJ, van Faassen H, Zafer A, Kirschning CJ, Sad S, Sprott GD.	J Immunol	10.4049/jimmunol.178.4.2396	2007
Metabolism	Comprehensive functional core microbiome comparison in genetically obese and lean hosts under the same environment.	Martinez-Alvaro M, Zubiri-Gaitan A, Hernandez P, Greenacre M, Ferrer A, Blasco A.	Commun Biol	10.1038/s42003-021-02784-w	2021
	Methanobrevibacter attenuation via probiotic intervention reduces flatulence in adult human: A non-randomised paired-design clinical trial of efficacy.	Seo M, Heo J, Yoon J, Kim SY, Kang YM, Yu J, Cho S, Kim H.	PLoS One	10.1371/journal.pone.0184547	2017
	Gut Microbial Diversity Assessment of Indian Type-2-Diabetics Reveals Alterations in Eubacteria, Archaea, and Eukaryotes.	Bhute SS, Suryavanshi MV, Joshi SM, Yajnik CS, Shouche YS, Ghaskadbi SS.	Front Microbiol	10.3389/fmicb.2017.00214	2017
Genetics	Towards facilitated interpretation of shotgun metagenomics long-read sequencing data analyzed with KMA for the detection of bacterial pathogens and their antimicrobial resistance genes.	Gand M, Navickaite I, Bartsch LJ, Grutzke J, Overballe-Petersen S, Rasmussen A, Otani S, Michelacci V, Matamoros BR, Gonzalez-Zorn B, Brouwer MSM, Di Marcantonio L, Bloemen B, Vanneste K, Roosens NHCJ, AbuOun M, De Keersmaecker SCJ.	Front Microbiol	10.3389/fmicb.2024.1336532	2024
Metabolism	Methanogenesis in the Digestive Tracts of the Tropical Millipedes Archispirostreptus gigas (Diplopoda, Spirostreptidae) and Epibolus pulchripes (Diplopoda, Pachybolidae).	Horvathova T, Sustr V, Chronakova A, Semanova S, Lang K, Dietrich C, Hubacek T, Ardestani MM, Lara AC, Brune A, Simek M.	Appl Environ Microbiol	10.1128/aem.00614-21	2021
Pathogenicity	Effect of natural polyphenols in Chinese herbal medicine on obesity and diabetes: Interactions among gut microbiota, metabolism, and immunity.	Chen K, Gao Z, Ding Q, Tang C, Zhang H, Zhai T, Xie W, Jin Z, Zhao L, Liu W.	Front Nutr	10.3389/fnut.2022.962720	2022
	Impact of cystic fibrosis disease on archaea and bacteria composition of gut microbiota.	Miragoli F, Federici S, Ferrari S, Minuti A, Rebecchi A, Bruzzese E, Buccigrossi V, Guarino A, Callegari ML.	FEMS Microbiol Ecol	10.1093/femsec/fiw230	2017
	Blastocystis Colonization Is Associated with Increased Diversity and Altered Gut Bacterial Communities in Healthy Malian Children.	Kodio A, Coulibaly D, Kone AK, Konate S, Doumbo S, Guindo A, Bittar F, Gouriet F, Raoult D, Thera MA, Ranque S.	Microorganisms	10.3390/microorganisms7120649	2019
Enzymology	Large-scale comparative metagenomics of Blastocystis, a common member of the human gut microbiome.	Beghini F, Pasolli E, Truong TD, Putignani L, Caccio SM, Segata N.	ISME J	10.1038/ismej.2017.139	2017
	Interplay between inflammatory bowel disease therapeutics and the gut microbiome reveals opportunities for novel treatment approaches.	O'Reilly C, Mills S, Rea MC, Lavelle A, Ghosh S, Hill C, Ross RP.	Microbiome Res Rep	10.20517/mrr.2023.41	2023
Pathogenicity	Tracing the evolving dynamics and research hotspots of microbiota and immune microenvironment from the past to the new era.	Huang R, Yao Y, Tong X, Wang L, Qian W, Lu J, Zhang W, Liu Y, Wang S, Xian S, Zhu Y, Huang J, Guo X, Gu M, Lv H, Bi W, Meng C, Chang Z, Zhang J, Xu D, Ji S.	Microbiol Spectr	10.1128/spectrum.00135-23	2023
Metabolism	Gut microbiota in early pregnancy among women with Hyperglycaemia vs. Normal blood glucose.	Gao B, Zhong M, Shen Q, Wu Y, Cao M, Ju S, Chen L.	BMC Pregnancy Childbirth	10.1186/s12884-020-02961-5	2020
	Gut microbiome composition may be an indicator of preclinical Alzheimer's disease.	Ferreiro AL, Choi J, Ryou J, Newcomer EP, Thompson R, Bollinger RM, Hall-Moore C, Ndao IM, Sax L, Benzinger TLS, Stark SL, Holtzman DM, Fagan AM, Schindler SE, Cruchaga C, Butt OH, Morris JC, Tarr PI, Ances BM, Dantas G.	Sci Transl Med	10.1126/scitranslmed.abo2984	2023
	Impact of birth weight and postnatal diet on the gut microbiota of young adult guinea pigs.	Al K, Sarr O, Dunlop K, Gloor GB, Reid G, Burton J, Regnault TR.	PeerJ	10.7717/peerj.2840	2017
	Carbohydrate Intolerance and Disaccharidase Measurement - a Mini-Review.	Burke M.	Clin Biochem Rev	10.33176/aacb-19-00025	2019
	Enteroendocrine Cells: Sensing Gut Microbiota and Regulating Inflammatory Bowel Diseases.	Yu Y, Yang W, Li Y, Cong Y.	Inflamm Bowel Dis	10.1093/ibd/izz217	2020
Phylogeny	Gut microbiota patterns associated with colonization of different Clostridium difficile ribotypes.	Skraban J, Dzeroski S, Zenko B, Mongus D, Gangl S, Rupnik M.	PLoS One	10.1371/journal.pone.0058005	2013
Metabolism	Distinct Bile Acid Profiles in Patients With Chronic Hepatitis B Virus Infection Reveal Metabolic Interplay Between Host, Virus and Gut Microbiome.	Sun Z, Huang C, Shi Y, Wang R, Fan J, Yu Y, Zhang Z, Zhu K, Li M, Ni Q, Chen Z, Zheng M, Yang Z.	Front Med (Lausanne)	10.3389/fmed.2021.708495	2021
Enzymology	A metagenome-wide association study of gut microbiota in asthma in UK adults.	Wang Q, Li F, Liang B, Liang Y, Chen S, Mo X, Ju Y, Zhao H, Jia H, Spector TD, Xie H, Guo R.	BMC Microbiol	10.1186/s12866-018-1257-x	2018
	Host microbiome in tuberculosis: disease, treatment, and immunity perspectives.	Pant A, Das B, Arimbasseri GA.	Front Microbiol	10.3389/fmicb.2023.1236348	2023
Metabolism	Effects of reductive acetogenic bacteria and lauric acid on in vivo ruminal fermentation, microbial populations, and methane mitigation in Hanwoo steers in South Korea.	Kim SH, Mamuad LL, Choi YJ, Sung HG, Cho KK, Lee SS.	J Anim Sci	10.1093/jas/sky266	2018
Metabolism	Review article: inhibition of methanogenic archaea by statins as a targeted management strategy for constipation and related disorders.	Gottlieb K, Wacher V, Sliman J, Pimentel M.	Aliment Pharmacol Ther	10.1111/apt.13469	2016
	Probiotics maintain the gut microbiome homeostasis during Indian Antarctic expedition by ship.	Srivastava AK, Rohil V, Bhushan B, Eslavath MR, Gupta H, Chanda S, Kumar B, Varshney R, Ganju L.	Sci Rep	10.1038/s41598-021-97890-4	2021
	Dietary lignans, plasma enterolactone levels, and metabolic risk in men: exploring the role of the gut microbiome.	Li Y, Wang F, Li J, Ivey KL, Wilkinson JE, Wang DD, Li R, Liu G, Eliassen HA, Chan AT, Clish CB, Huttenhower C, Hu FB, Sun Q, Rimm EB.	BMC Microbiol	10.1186/s12866-022-02495-0	2022
Enzymology	Reconstruction of ancient microbial genomes from the human gut.	Wibowo MC, Yang Z, Borry M, Hubner A, Huang KD, Tierney BT, Zimmerman S, Barajas-Olmos F, Contreras-Cubas C, Garcia-Ortiz H, Martinez-Hernandez A, Luber JM, Kirstahler P, Blohm T, Smiley FE, Arnold R, Ballal SA, Pamp SJ, Russ J, Maixner F, Rota-Stabelli O, Segata N, Reinhard K, Orozco L, Warinner C, Snow M, LeBlanc S, Kostic AD.	Nature	10.1038/s41586-021-03532-0	2021
	A Cross-Sectional Study of Compositional and Functional Profiles of Gut Microbiota in Sardinian Centenarians.	Wu L, Zeng T, Zinellu A, Rubino S, Kelvin DJ, Carru C.	mSystems	10.1128/msystems.00325-19	2019
	Cage and maternal effects on the bacterial communities of the murine gut.	Singh G, Brass A, Cruickshank SM, Knight CG.	Sci Rep	10.1038/s41598-021-89185-5	2021
Metabolism	In vitro bacterial growth and in vivo ruminal microbiota populations associated with bloat in steers grazing wheat forage.	Min BR, Pinchak WE, Anderson RC, Hume ME.	J Anim Sci	10.2527/jas.2005-399	2006
Phylogeny	Gut microbiota in pregnant Malaysian women: a comparison between trimesters, body mass index and gestational diabetes status.	Abdullah B, Daud S, Aazmi MS, Idorus MY, Mahamooth MIJ.	BMC Pregnancy Childbirth	10.1186/s12884-022-04472-x	2022
Metabolism	The Oligosaccharyltransferase AglB Supports Surface-Associated Growth and Iron Oxidation in Methanococcus maripaludis.	Holten MP, Fonseca DR, Costa KC.	Appl Environ Microbiol	10.1128/aem.00995-21	2021
Pathogenicity	Exploring Bacterial Attributes That Underpin Symbiont Life in the Monogastric Gut.	Tannock GW.	Appl Environ Microbiol	10.1128/aem.01128-22	2022
Enzymology	A common vaginal microbiota composition among breeds of Bos taurus indicus (Gyr and Nellore).	Giannattasio-Ferraz S, Laguardia-Nascimento M, Gasparini MR, Leite LR, Araujo FMG, de Matos Salim AC, de Oliveira AP, Nicoli JR, de Oliveira GC, da Fonseca FG, Barbosa-Stancioli EF.	Braz J Microbiol	10.1007/s42770-019-00120-3	2019
	Gut microbiota as an antioxidant system in centenarians associated with high antioxidant activities of gut-resident Lactobacillus.	Wu L, Xie X, Li Y, Liang T, Zhong H, Yang L, Xi Y, Zhang J, Ding Y, Wu Q.	NPJ Biofilms Microbiomes	10.1038/s41522-022-00366-0	2022
Phylogeny	In-Silico Detection of Oral Prokaryotic Species With Highly Similar 16S rRNA Sequence Segments Using Different Primer Pairs.	Regueira-Iglesias A, Vazquez-Gonzalez L, Balsa-Castro C, Blanco-Pintos T, Martin-Biedma B, Arce VM, Carreira MJ, Tomas I.	Front Cell Infect Microbiol	10.3389/fcimb.2021.770668	2021
	Age-Associated Changes in Gut Microbiota and Dietary Components Related with the Immune System in Adulthood and Old Age: A Cross-Sectional Study.	Salazar N, Arboleya S, Fernandez-Navarro T, de Los Reyes-Gavilan CG, Gonzalez S, Gueimonde M.	Nutrients	10.3390/nu11081765	2019
	Detection of methanogens and proteobacteria from a single cell of rumen ciliate protozoa.	Irbis C, Ushida K.	J Gen Appl Microbiol	10.2323/jgam.50.203	2004
	Effects of dietary energy levels on rumen fermentation, microbiota, and gastrointestinal morphology in growing ewes.	Wang Q, Wang Y, Wang X, Dai C, Tang W, Li J, Huang P, Li Y, Ding X, Huang J, Hussain T, Yang H, Zhu M.	Food Sci Nutr	10.1002/fsn3.1955	2020
	Breast Milk: A Meal Worth Having.	Duale A, Singh P, Al Khodor S.	Front Nutr	10.3389/fnut.2021.800927	2021
	Integrating biological knowledge for mechanistic inference in the host-associated microbiome.	Santangelo BE, Apgar M, Colorado ASB, Martin CG, Sterrett J, Wall E, Joachimiak MP, Hunter LE, Lozupone CA.	Front Microbiol	10.3389/fmicb.2024.1351678	2024
	Gut microbiome and metabolome profiling in Framingham heart study reveals cholesterol-metabolizing bacteria.	Li C, Strazar M, Mohamed AMT, Pacheco JA, Walker RL, Lebar T, Zhao S, Lockart J, Dame A, Thurimella K, Jeanfavre S, Brown EM, Ang QY, Berdy B, Sergio D, Invernizzi R, Tinoco A, Pishchany G, Vasan RS, Balskus E, Huttenhower C, Vlamakis H, Clish C, Shaw SY, Plichta DR, Xavier RJ.	Cell	10.1016/j.cell.2024.03.014	2024
	Multiomics signatures of type 1 diabetes with and without albuminuria.	Clos-Garcia M, Ahluwalia TS, Winther SA, Henriksen P, Ali M, Fan Y, Stankevic E, Lyu L, Vogt JK, Hansen T, Legido-Quigley C, Rossing P, Pedersen O.	Front Endocrinol (Lausanne)	10.3389/fendo.2022.1015557	2022
Metabolism	Anaerobic bioconversion of cellulose by Ruminococcus albus, Methanobrevibacter smithii, and Methanosarcina barkeri.	Miller TL, Currenti E, Wolin MJ.	Appl Microbiol Biotechnol	10.1007/s002530000430	2000
Pathogenicity	Mediterranean Diet to Prevent the Development of Colon Diseases: A Meta-Analysis of Gut Microbiota Studies.	Illescas O, Rodriguez-Sosa M, Gariboldi M.	Nutrients	10.3390/nu13072234	2021
	Is Probiotic Supplementation Useful for the Management of Body Weight and Other Anthropometric Measures in Adults Affected by Overweight and Obesity with Metabolic Related Diseases? A Systematic Review and Meta-Analysis.	Perna S, Ilyas Z, Giacosa A, Gasparri C, Peroni G, Faliva MA, Rigon C, Naso M, Riva A, Petrangolini G, A Redha A, Rondanelli M.	Nutrients	10.3390/nu13020666	2021
	Salt tolerance of archaeal extremely halophilic lipid membranes.	Tenchov B, Vescio EM, Sprott GD, Zeidel ML, Mathai JC.	J Biol Chem	10.1074/jbc.m600369200	2006
Pathogenicity	Facilitating a high-quality dietary pattern induces shared microbial responses linking diet quality, blood pressure, and microbial sterol metabolism in caregiver-child dyads.	Hill EB, Chen L, Bailey MT, Singh Khalsa A, Maltz R, Kelleher K, Spees CK, Zhu J, Loman BR.	Gut Microbes	10.1080/19490976.2022.2150502	2022
Metabolism	The effect of a methanogen, Methanobrevibacter smithii, on the growth rate, organic acid production, and specific ATP activity of three predominant ruminal cellulolytic bacteria.	Rychlik JL, May T.	Curr Microbiol	10.1007/s002849910035	2000
	Risk assessment with gut microbiome and metabolite markers in NAFLD development.	Leung H, Long X, Ni Y, Qian L, Nychas E, Siliceo SL, Pohl D, Hanhineva K, Liu Y, Xu A, Nielsen HB, Belda E, Clement K, Loomba R, Li H, Jia W, Jia W, Panagiotou G.	Sci Transl Med	10.1126/scitranslmed.abk0855	2022
	Association of Flavonifractor plautii, a Flavonoid-Degrading Bacterium, with the Gut Microbiome of Colorectal Cancer Patients in India.	Gupta A, Dhakan DB, Maji A, Saxena R, P K VP, Mahajan S, Pulikkan J, Kurian J, Gomez AM, Scaria J, Amato KR, Sharma AK, Sharma VK.	mSystems	10.1128/msystems.00438-19	2019
Metabolism	Bacteria and methanogens differ along the gastrointestinal tract of Chinese roe deer (Capreolus pygargus).	Li Z, Zhang Z, Xu C, Zhao J, Liu H, Fan Z, Yang F, Wright AD, Li G.	PLoS One	10.1371/journal.pone.0114513	2014
	Distinct composition and metabolic functions of human gut microbiota are associated with cachexia in lung cancer patients.	Ni Y, Lohinai Z, Heshiki Y, Dome B, Moldvay J, Dulka E, Galffy G, Berta J, Weiss GJ, Sommer MOA, Panagiotou G.	ISME J	10.1038/s41396-021-00998-8	2021
	Understanding the interactions between bacteria in the human gut through metabolic modeling.	Shoaie S, Karlsson F, Mardinoglu A, Nookaew I, Bordel S, Nielsen J.	Sci Rep	10.1038/srep02532	2013
	Lactobacillus salivarius Subspecies salicinius SA-03 is a New Probiotic Capable of Enhancing Exercise Performance and Decreasing Fatigue.	Lee MC, Hsu YJ, Ho HH, Hsieh SH, Kuo YW, Sung HC, Huang CC.	Microorganisms	10.3390/microorganisms8040545	2020
Pathogenicity	Proteobacteria Overgrowth and Butyrate-Producing Taxa Depletion in the Gut Microbiota of Glycogen Storage Disease Type 1 Patients.	Ceccarani C, Bassanini G, Montanari C, Casiraghi MC, Ottaviano E, Morace G, Biasucci G, Paci S, Borghi E, Verduci E.	Metabolites	10.3390/metabo10040133	2020
	Community members in activated sludge as determined by molecular probe technology.	Xu W, Brand VR, Suresh S, Jensen MA, Davis RW, Criddle CS, St Onge RP, Hyman RW.	Water Res	10.1016/j.watres.2019.115104	2020
	Nutraceuticals and Herbal Food Supplements for Weight Loss: Is There a Prebiotic Role in the Mechanism of Action?	Bertuccioli A, Cardinali M, Biagi M, Moricoli S, Morganti I, Zonzini GB, Rigillo G.	Microorganisms	10.3390/microorganisms9122427	2021
Genetics	Methanobacterium formicicum as a target rumen methanogen for the development of new methane mitigation interventions: A review.	Chellapandi P, Bharathi M, Sangavai C, Prathiviraj R.	Vet Anim Sci	10.1016/j.vas.2018.09.001	2018
	Archaeosomes as adjuvants for combination vaccines.	Patel GB, Zhou H, KuoLee R, Chen W.	J Liposome Res	10.1081/lpr-200039200	2004
	The structure of microbial populations in Nelore GIT reveals inter-dependency of methanogens in feces and rumen.	Andrade BGN, Bressani FA, Cuadrat RRC, Tizioto PC, de Oliveira PSN, Mourao GB, Coutinho LL, Reecy JM, Koltes JE, Walsh P, Berndt A, Palhares JCP, Regitano LCA.	J Anim Sci Biotechnol	10.1186/s40104-019-0422-x	2020
	Beneficial metabolic transformations and prebiotic potential of hemp bran and its alcalase hydrolysate, after colonic fermentation in a gut model.	Nissen L, Casciano F, Babini E, Gianotti A.	Sci Rep	10.1038/s41598-023-27726-w	2023
Genetics	The human gut microbiome: a review of the effect of obesity and surgically induced weight loss.	Sweeney TE, Morton JM.	JAMA Surg	10.1001/jamasurg.2013.5	2013
	Lovastatin lactone may improve irritable bowel syndrome with constipation (IBS-C) by inhibiting enzymes in the archaeal methanogenesis pathway.	Muskal SM, Sliman J, Kokai-Kun J, Pimentel M, Wacher V, Gottlieb K.	F1000Res	10.12688/f1000research.8406.3	2016
	Advantages and limitations of experimental autoimmune encephalomyelitis in breaking down the role of the gut microbiome in multiple sclerosis.	Melamed E, Palmer JL, Fonken C.	Front Mol Neurosci	10.3389/fnmol.2022.1019877	2022
	Associations among organochlorine pesticides, Methanobacteriales, and obesity in Korean women.	Lee HS, Lee JC, Lee IK, Moon HB, Chang YS, Jacobs DR, Lee DH.	PLoS One	10.1371/journal.pone.0027773	2011
	Holstein and Jersey Steers Differ in Rumen Microbiota and Enteric Methane Emissions Even Fed the Same Total Mixed Ration.	Islam M, Kim SH, Ramos SC, Mamuad LL, Son AR, Yu Z, Lee SS, Cho YI, Lee SS.	Front Microbiol	10.3389/fmicb.2021.601061	2021
Metabolism	Intestinal Microbial Metabolites Are Linked to Severity of Myocardial Infarction in Rats.	Lam V, Su J, Hsu A, Gross GJ, Salzman NH, Baker JE.	PLoS One	10.1371/journal.pone.0160840	2016
Pathogenicity	The Impact of Starvation on the Microbiome and Gut-Brain Interaction in Anorexia Nervosa.	Seitz J, Belheouane M, Schulz N, Dempfle A, Baines JF, Herpertz-Dahlmann B.	Front Endocrinol (Lausanne)	10.3389/fendo.2019.00041	2019
Pathogenicity	Acute and persistent effects of commonly used antibiotics on the gut microbiome and resistome in healthy adults.	Anthony WE, Wang B, Sukhum KV, D'Souza AW, Hink T, Cass C, Seiler S, Reske KA, Coon C, Dubberke ER, Burnham CD, Dantas G, Kwon JH.	Cell Rep	10.1016/j.celrep.2022.110649	2022
	Gut commensals and their metabolites in health and disease.	Krishnamurthy HK, Pereira M, Bosco J, George J, Jayaraman V, Krishna K, Wang T, Bei K, Rajasekaran JJ.	Front Microbiol	10.3389/fmicb.2023.1244293	2023
	Garlic and Its Bioactive Compounds: Implications for Methane Emissions and Ruminant Nutrition.	Sari NF, Ray P, Rymer C, Kliem KE, Stergiadis S.	Animals (Basel)	10.3390/ani12212998	2022
Metabolism	Microbial Diversity and Organic Acid Production of Guinea Pig Faecal Samples.	Palakawong Na Ayudthaya S, van der Oost H, van der Oost J, van Vliet DM, Plugge CM.	Curr Microbiol	10.1007/s00284-019-01630-x	2019
Genetics	Longitudinal flux balance analyses of a patient with episodic colonic inflammation reveals microbiome metabolic dynamics.	Basile A, Heinken A, Hertel J, Smarr L, Li W, Treu L, Valle G, Campanaro S, Thiele I.	Gut Microbes	10.1080/19490976.2023.2226921	2023
Metabolism	Phosphatidylserine receptor-mediated recognition of archaeosome adjuvant promotes endocytosis and MHC class I cross-presentation of the entrapped antigen by phagosome-to-cytosol transport and classical processing.	Gurnani K, Kennedy J, Sad S, Sprott GD, Krishnan L.	J Immunol	10.4049/jimmunol.173.1.566	2004
Pathogenicity	Rubidium chloride modulated the fecal microbiota community in mice.	Chen Q, He Z, Zhuo Y, Li S, Yang W, Hu L, Zhong H.	BMC Microbiol	10.1186/s12866-021-02095-4	2021
Enzymology	Cross-Comparison of Human Wastewater-Associated Molecular Markers in Relation to Fecal Indicator Bacteria and Enteric Viruses in Recreational Beach Waters.	Hughes B, Beale DJ, Dennis PG, Cook S, Ahmed W.	Appl Environ Microbiol	10.1128/aem.00028-17	2017
Metabolism	Interplay between the human gut microbiome and host metabolism.	Visconti A, Le Roy CI, Rosa F, Rossi N, Martin TC, Mohney RP, Li W, de Rinaldis E, Bell JT, Venter JC, Nelson KE, Spector TD, Falchi M.	Nat Commun	10.1038/s41467-019-12476-z	2019
	Changes in intestinal microbiota in postmenopausal oestrogen receptor-positive breast cancer patients treated with (neo)adjuvant chemotherapy.	Aarnoutse R, Ziemons J, Hillege LE, de Vos-Geelen J, de Boer M, Bisschop SMP, Vriens BEPJ, Vincent J, van de Wouw AJ, Le GN, Venema K, Rensen SS, Penders J, Smidt ML.	NPJ Breast Cancer	10.1038/s41523-022-00455-5	2022
	Gut microbiota profile of Indonesian stunted children and children with normal nutritional status.	Surono IS, Widiyanti D, Kusumo PD, Venema K.	PLoS One	10.1371/journal.pone.0245399	2021
	Effect of diet on the gut mycobiome and potential implications in inflammatory bowel disease.	Buttar J, Kon E, Lee A, Kaur G, Lunken G.	Gut Microbes	10.1080/19490976.2024.2399360	2024
Metabolism	Impacts of biofilms on the conversion of cellulose.	Brethauer S, Shahab RL, Studer MH.	Appl Microbiol Biotechnol	10.1007/s00253-020-10595-y	2020
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	Toxicity of Methylated Bismuth Compounds Produced by Intestinal Microorganisms to Bacteroides thetaiotaomicron, a Member of the Physiological Intestinal Microbiota.	Bialek B, Diaz-Bone RA, Pieper D, Hollmann M, Hensel R.	J Toxicol	10.1155/2011/608349	2011
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Metabolism	Interspecies H2 transfer in cellulose degradation between fibrolytic bacteria and H2-utilizing microorganisms from the human colon.	Robert C, Del'Homme C, Bernalier-Donadille A.	FEMS Microbiol Lett	10.1111/j.1574-6968.2001.tb10949.x	2001
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Genetics	Gut Bacteria Missing in Severe Acute Malnutrition, Can We Identify Potential Probiotics by Culturomics?	Tidjani Alou M, Million M, Traore SI, Mouelhi D, Khelaifia S, Bachar D, Caputo A, Delerce J, Brah S, Alhousseini D, Sokhna C, Robert C, Diallo BA, Diallo A, Parola P, Golden M, Lagier JC, Raoult D.	Front Microbiol	10.3389/fmicb.2017.00899	2017
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Metabolism	The intestinal microbiota and metabolites in patients with anorexia nervosa.	Prochazkova P, Roubalova R, Dvorak J, Kreisinger J, Hill M, Tlaskalova-Hogenova H, Tomasova P, Pelantova H, Cermakova M, Kuzma M, Bulant J, Bilej M, Smitka K, Lambertova A, Holanova P, Papezova H.	Gut Microbes	10.1080/19490976.2021.1902771	2021
Pathogenicity	Gastrointestinal tolerance of low FODMAP oral nutrition supplements in healthy human subjects: a randomized controlled trial.	Erickson J, Korczak R, Wang Q, Slavin J.	Nutr J	10.1186/s12937-017-0256-3	2017
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Transcriptome	Impact of 16S rRNA Gene Redundancy and Primer Pair Selection on the Quantification and Classification of Oral Microbiota in Next-Generation Sequencing.	Regueira-Iglesias A, Vazquez-Gonzalez L, Balsa-Castro C, Blanco-Pintos T, Vila-Blanco N, Carreira MJ, Tomas I.	Microbiol Spectr	10.1128/spectrum.04398-22	2023
	Changes in gut microbiota in the acute phase after spinal cord injury correlate with severity of the lesion.	Bazzocchi G, Turroni S, Bulzamini MC, D'Amico F, Bava A, Castiglioni M, Cagnetta V, Losavio E, Cazzaniga M, Terenghi L, De Palma L, Frasca G, Aiachini B, Cremascoli S, Massone A, Oggerino C, Onesta MP, Rapisarda L, Pagliacci MC, Biscotto S, Scarazzato M, Giovannini T, Balloni M, Candela M, Brigidi P, Kiekens C.	Sci Rep	10.1038/s41598-021-92027-z	2021
Metabolism	Degradation of fresh ryegrass by methanogenic co-cultures of ruminal fungi grown in the presence or absence of Fibrobacter succinogenes.	Joblin KN, Matsui H, Naylor GE, Ushida K.	Curr Microbiol	10.1007/s00284-001-0078-5	2002
Pathogenicity	Gut Microbiota of Obese Children Influences Inflammatory Mucosal Immune Pathways in the Respiratory Tract to Influenza Virus Infection: Optimization of an Ideal Duration of Microbial Colonization in a Gnotobiotic Pig Model.	Renu S, Deblais L, Patil V, Schrock J, Kathayat D, Srivastava V, Feliciano-Ruiz N, Han Y, Ramesh A, Lakshmanappa YS, Ghimire S, Dhakal S, Rajashekara G, Renukaradhya GJ.	Microbiol Spectr	10.1128/spectrum.02674-21	2022
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Metabolism	Increasing activity of H(2)-metabolizing microbes lowers decompression sickness risk in pigs during H(2) dives.	Kayar SR, Fahlman A, Lin WC, Whitman WB.	J Appl Physiol (1985)	10.1152/jappl.2001.91.6.2713	2001
	An online atlas of human plasma metabolite signatures of gut microbiome composition.	Dekkers KF, Sayols-Baixeras S, Baldanzi G, Nowak C, Hammar U, Nguyen D, Varotsis G, Brunkwall L, Nielsen N, Eklund AC, Bak Holm J, Nielsen HB, Ottosson F, Lin YT, Ahmad S, Lind L, Sundstrom J, Engstrom G, Smith JG, Arnlov J, Orho-Melander M, Fall T.	Nat Commun	10.1038/s41467-022-33050-0	2022
Metabolism	Gut Microbiota-Derived Propionate Regulates the Expression of Reg3 Mucosal Lectins and Ameliorates Experimental Colitis in Mice.	Bajic D, Niemann A, Hillmer AK, Mejias-Luque R, Bluemel S, Docampo M, Funk MC, Tonin E, Boutros M, Schnabl B, Busch DH, Miki T, Schmid RM, van den Brink MRM, Gerhard M, Stein-Thoeringer CK.	J Crohns Colitis	10.1093/ecco-jcc/jjaa065	2020
Genetics	Metagenomic insights into the diversity of carbohydrate-degrading enzymes in the yak fecal microbial community.	Gong G, Zhou S, Luo R, Gesang Z, Suolang S.	BMC Microbiol	10.1186/s12866-020-01993-3	2020
Pathogenicity	Viruses as key reservoirs of antibiotic resistance genes in the environment.	Debroas D, Siguret C.	ISME J	10.1038/s41396-019-0478-9	2019
Enzymology	Identification of archaeal rDNA from subgingival dental plaque by PCR amplification and sequence analysis.	Kulik EM, Sandmeier H, Hinni K, Meyer J.	FEMS Microbiol Lett	10.1111/j.1574-6968.2001.tb10553.x	2001
Phylogeny	Real-time analysis of gut flora in Entamoeba histolytica infected patients of Northern India.	Verma AK, Verma R, Ahuja V, Paul J.	BMC Microbiol	10.1186/1471-2180-12-183	2012
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	Lactobacillus reuteri and Escherichia coli in the human gut microbiota may predict weight gain associated with vancomycin treatment.	Million M, Thuny F, Angelakis E, Casalta JP, Giorgi R, Habib G, Raoult D.	Nutr Diabetes	10.1038/nutd.2013.28	2013
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Metabolism	Specific Microbial Taxa and Functional Capacity Contribute to Chicken Abdominal Fat Deposition.	Xiang H, Gan J, Zeng D, Li J, Yu H, Zhao H, Yang Y, Tan S, Li G, Luo C, Xie Z, Zhao G, Li H.	Front Microbiol	10.3389/fmicb.2021.643025	2021
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Pathogenicity	Microbiota, IgA and Multiple Sclerosis.	Boussamet L, Rajoka MSR, Berthelot L.	Microorganisms	10.3390/microorganisms10030617	2022
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Metabolism	Changes in Microbial Biofilm Communities during Colonization of Sewer Systems.	Auguet O, Pijuan M, Batista J, Borrego CM, Gutierrez O.	Appl Environ Microbiol	10.1128/aem.01538-15	2015
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Genetics	Pan-genome of the dominant human gut-associated archaeon, Methanobrevibacter smithii, studied in twins.	Hansen EE, Lozupone CA, Rey FE, Wu M, Guruge JL, Narra A, Goodfellow J, Zaneveld JR, McDonald DT, Goodrich JA, Heath AC, Knight R, Gordon JI.	Proc Natl Acad Sci U S A	10.1073/pnas.1000071108	2011
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Genetics	Metabolic phenotyping of the human microbiome.	Barton W, O'Sullivan O, Cotter PD.	F1000Res	10.12688/f1000research.19481.1	2019
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Metabolism	Investigation of a new acetogen isolated from an enrichment of the tammar wallaby forestomach.	Gagen EJ, Wang J, Padmanabha J, Liu J, de Carvalho IP, Liu J, Webb RI, Al Jassim R, Morrison M, Denman SE, McSweeney CS.	BMC Microbiol	10.1186/s12866-014-0314-3	2014
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	Application of Mootral^TM Reduces Methane Production by Altering the Archaea Community in the Rumen Simulation Technique.	Eger M, Graz M, Riede S, Breves G.	Front Microbiol	10.3389/fmicb.2018.02094	2018
	A pioneer calf foetus microbiome.	Guzman CE, Wood JL, Egidi E, White-Monsant AC, Semenec L, Grommen SVH, Hill-Yardin EL, De Groef B, Franks AE.	Sci Rep	10.1038/s41598-020-74677-7	2020
	Changes in microbiota composition, bile and fatty acid metabolism, in successful faecal microbiota transplantation for Clostridioides difficile infection.	Brown JR, Flemer B, Joyce SA, Zulquernain A, Sheehan D, Shanahan F, O'Toole PW.	BMC Gastroenterol	10.1186/s12876-018-0860-5	2018
Metabolism	Shifts in gut microbiome and metabolome are associated with risk of recurrent atrial fibrillation.	Li J, Zuo K, Zhang J, Hu C, Wang P, Jiao J, Liu Z, Yin X, Liu X, Li K, Yang X.	J Cell Mol Med	10.1111/jcmm.15959	2020
Genetics	Leveraging Genomic Associations in Precision Digital Care for Weight Loss: Cohort Study.	Sinha R, Kachru D, Ricchetti RR, Singh-Rambiritch S, Muthukumar KM, Singaravel V, Irudayanathan C, Reddy-Sinha C, Junaid I, Sharma G, Francis-Lyon PA.	J Med Internet Res	10.2196/25401	2021
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Genetics	Repertoire of the gut microbiota from stomach to colon using culturomics and next-generation sequencing.	Mailhe M, Ricaboni D, Vitton V, Gonzalez JM, Bachar D, Dubourg G, Cadoret F, Robert C, Delerce J, Levasseur A, Fournier PE, Angelakis E, Lagier JC, Raoult D.	BMC Microbiol	10.1186/s12866-018-1304-7	2018
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Genetics	Finding the right fit: evaluation of short-read and long-read sequencing approaches to maximize the utility of clinical microbiome data.	Gehrig JL, Portik DM, Driscoll MD, Jackson E, Chakraborty S, Gratalo D, Ashby M, Valladares R.	Microb Genom	10.1099/mgen.0.000794	2022
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Biotechnology	Selection and assembly of indigenous bacteria and methanogens from spent metalworking fluids and their potential as a starting culture in a fluidized bed reactor.	Vyrides I, Rivett DW, Bruce KD, Lilley AK.	Microb Biotechnol	10.1111/1751-7915.13448	2019
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Biotechnology	Methanogenic bacteria: presence in foodstuffs.	Brusa T, Ferrari F, Canzi E.	J Basic Microbiol	10.1002/(sici)1521-4028(199805)38:2<79::aid-jobm79>3.0.co;2-j	1998
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Pathogenicity	Archaeosome adjuvant overcomes tolerance to tumor-associated melanoma antigens inducing protective CD8 T cell responses.	Krishnan L, Deschatelets L, Stark FC, Gurnani K, Sprott GD.	Clin Dev Immunol	10.1155/2010/578432	2010
Metabolism	Rumen methanogen and protozoal communities of Tibetan sheep and Gansu Alpine Finewool sheep grazing on the Qinghai-Tibetan Plateau, China.	Huang J, Li Y.	BMC Microbiol	10.1186/s12866-018-1351-0	2018
	Evaluation of Glass Wool Filters and Hollow-Fiber Ultrafiltration Concentration Methods for qPCR Detection of Human Adenoviruses and Polyomaviruses in River Water.	Ahmed W, Gyawali P, Toze S.	Water Air Soil Pollut	10.1007/s11270-016-3026-5	2016
	The gut microbiota contributes to the pathogenesis of anorexia nervosa in humans and mice.	Fan Y, Stoving RK, Berreira Ibraim S, Hyotylainen T, Thirion F, Arora T, Lyu L, Stankevic E, Hansen TH, Dechelotte P, Sinioja T, Ragnarsdottir O, Pons N, Galleron N, Quinquis B, Levenez F, Roume H, Falony G, Vieira-Silva S, Raes J, Clausen L, Telleus GK, Backhed F, Oresic M, Ehrlich SD, Pedersen O.	Nat Microbiol	10.1038/s41564-023-01355-5	2023
Metabolism	Genomics and metagenomics of trimethylamine-utilizing Archaea in the human gut microbiome.	Borrel G, McCann A, Deane J, Neto MC, Lynch DB, Brugere JF, O'Toole PW.	ISME J	10.1038/ismej.2017.72	2017
	Characterization of the Gut Microbiota in Individuals with Overweight or Obesity during a Real-World Weight Loss Dietary Program: A Focus on the Bacteroides 2 Enterotype.	Alili R, Belda E, Fabre O, Pelloux V, Giordano N, Legrand R, Bel Lassen P, Swartz TD, Zucker JD, Clement K.	Biomedicines	10.3390/biomedicines10010016	2021
	Amino acid supplements and metabolic health: a potential interplay between intestinal microbiota and systems control.	Bifari F, Ruocco C, Decimo I, Fumagalli G, Valerio A, Nisoli E.	Genes Nutr	10.1186/s12263-017-0582-2	2017
Metabolism	Inulin-grown Faecalibacterium prausnitzii cross-feeds fructose to the human intestinal epithelium.	Fagundes RR, Bourgonje AR, Saeed A, Vich Vila A, Plomp N, Blokzijl T, Sadaghian Sadabad M, von Martels JZH, van Leeuwen SS, Weersma RK, Dijkstra G, Harmsen HJM, Faber KN.	Gut Microbes	10.1080/19490976.2021.1993582	2021
Genetics	How much metagenomic sequencing is enough to achieve a given goal?	Ni J, Yan Q, Yu Y.	Sci Rep	10.1038/srep01968	2013
	Archaeosomes as novel antigen delivery systems.	Sprott GD, Tolson DL, Patel GB.	FEMS Microbiol Lett	10.1111/j.1574-6968.1997.tb12618.x	1997
	How microbial glycosyl hydrolase activity in the gut mucosa initiates microbial cross-feeding.	Berkhout MD, Plugge CM, Belzer C.	Glycobiology	10.1093/glycob/cwab105	2022
Phylogeny	Genomic expansion of magnetotactic bacteria reveals an early common origin of magnetotaxis with lineage-specific evolution.	Lin W, Zhang W, Zhao X, Roberts AP, Paterson GA, Bazylinski DA, Pan Y.	ISME J	10.1038/s41396-018-0098-9	2018
Metabolism	H2 metabolism is widespread and diverse among human colonic microbes.	Wolf PG, Biswas A, Morales SE, Greening C, Gaskins HR.	Gut Microbes	10.1080/19490976.2016.1182288	2016
	Quantitative analysis of ruminal methanogenic microbial populations in beef cattle divergent in phenotypic residual feed intake (RFI) offered contrasting diets.	Carberry CA, Kenny DA, Kelly AK, Waters SM.	J Anim Sci Biotechnol	10.1186/2049-1891-5-41	2014
	Obesity and the gut microbiome: Striving for causality.	Harley IT, Karp CL.	Mol Metab	10.1016/j.molmet.2012.07.002	2012
	Functional Comparison of Bacteria from the Human Gut and Closely Related Non-Gut Bacteria Reveals the Importance of Conjugation and a Paucity of Motility and Chemotaxis Functions in the Gut Environment.	Dobrijevic D, Abraham AL, Jamet A, Maguin E, van de Guchte M.	PLoS One	10.1371/journal.pone.0159030	2016
Enzymology	Alternative fecal indicators and their empirical relationships with enteric viruses, Salmonella enterica, and Pseudomonas aeruginosa in surface waters of a tropical urban catchment.	Liang L, Goh SG, Vergara GG, Fang HM, Rezaeinejad S, Chang SY, Bayen S, Lee WA, Sobsey MD, Rose JB, Gin KY.	Appl Environ Microbiol	10.1128/aem.02670-14	2015
Metabolism	Gut microbiota, cirrhosis, and alcohol regulate bile acid metabolism in the gut.	Ridlon JM, Kang DJ, Hylemon PB, Bajaj JS.	Dig Dis	10.1159/000371678	2015
	Archaea in symbioses.	Wrede C, Dreier A, Kokoschka S, Hoppert M.	Archaea	10.1155/2012/596846	2012
	Turning Participatory Microbiome Research into Usable Data: Lessons from the American Gut Project.	Debelius JW, Vazquez-Baeza Y, McDonald D, Xu Z, Wolfe E, Knight R.	J Microbiol Biol Educ	10.1128/jmbe.v17i1.1034	2016
Metabolism	Archaebiotics: proposed therapeutic use of archaea to prevent trimethylaminuria and cardiovascular disease.	Brugere JF, Borrel G, Gaci N, Tottey W, O'Toole PW, Malpuech-Brugere C.	Gut Microbes	10.4161/gmic.26749	2014
	Lactose malabsorption testing in daily clinical practice: a critical retrospective analysis and comparison of the hydrogen/methane breath test and genetic test (c/t-13910 polymorphism) results.	Enko D, Rezanka E, Stolba R, Halwachs-Baumann G.	Gastroenterol Res Pract	10.1155/2014/464382	2014
Enzymology	Gut Microbiota Alteration is Characterized by a Proteobacteria and Fusobacteria Bloom in Kwashiorkor and a Bacteroidetes Paucity in Marasmus.	Pham TP, Tidjani Alou M, Bachar D, Levasseur A, Brah S, Alhousseini D, Sokhna C, Diallo A, Wieringa F, Million M, Raoult D.	Sci Rep	10.1038/s41598-019-45611-3	2019
Phylogeny	Comparative metagenomic and metatranscriptomic analyses reveal the breed effect on the rumen microbiome and its associations with feed efficiency in beef cattle.	Li F, Hitch TCA, Chen Y, Creevey CJ, Guan LL.	Microbiome	10.1186/s40168-019-0618-5	2019
	Study of completed archaeal genomes and proteomes: hypothesis of strong mutational AT pressure existed in their common predecessor.	Khrustalev VV, Barkovsky EV.	Genomics Proteomics Bioinformatics	10.1016/s1672-0229(10)60003-4	2010
	The landscape of microbiota research in Iran; a bibliometric and network analysis.	Aazami H, DehghanBanadaki H, Ejtahed HS, Fahimfar N, Razi F, Soroush AR, Hasani-Ranjbar S, Pasalar P, Ahmadi Badi S, Siadat SD, Larijani B.	J Diabetes Metab Disord	10.1007/s40200-020-00488-2	2020
Phylogeny	Rumen Microbiome Composition Is Altered in Sheep Divergent in Feed Efficiency.	McLoughlin S, Spillane C, Claffey N, Smith PE, O'Rourke T, Diskin MG, Waters SM.	Front Microbiol	10.3389/fmicb.2020.01981	2020
	Occurrence of microbial indicators, pathogenic bacteria and viruses in tropical surface waters subject to contrasting land use.	Goh SG, Saeidi N, Gu X, Vergara GGR, Liang L, Fang H, Kitajima M, Kushmaro A, Gin KY.	Water Res	10.1016/j.watres.2018.11.058	2019
	Functional amplification and preservation of human gut microbiota.	Gaci N, Chaudhary PP, Tottey W, Alric M, Brugere JF.	Microb Ecol Health Dis	10.1080/16512235.2017.1308070	2017
	Shifts on Gut Microbiota Associated to Mediterranean Diet Adherence and Specific Dietary Intakes on General Adult Population.	Garcia-Mantrana I, Selma-Royo M, Alcantara C, Collado MC.	Front Microbiol	10.3389/fmicb.2018.00890	2018
	The effects of co-cultivation with the acetogen Acetitomaculum ruminis on the fermentative metabolism of the rumen fungi Neocallimastix patriciarum and Neocallimastix sp. strain L2.	Rees EM, Lloyd D, Williams AG.	FEMS Microbiol Lett	10.1111/j.1574-6968.1995.tb07880.x	1995
Enzymology	Association of fecal indicator bacteria with human viruses and microbial source tracking markers at coastal beaches impacted by nonpoint source pollution.	McQuaig S, Griffith J, Harwood VJ.	Appl Environ Microbiol	10.1128/aem.00024-12	2012
Metabolism	The potent in vitro skin permeation of archaeosome made from lipids extracted of Sulfolobus acidocaldarius.	Moghimipour E, Kargar M, Ramezani Z, Handali S.	Archaea	10.1155/2013/782012	2013
	Gut-CNS-Axis as Possibility to Modulate Inflammatory Disease Activity-Implications for Multiple Sclerosis.	Fleck AK, Schuppan D, Wiendl H, Klotz L.	Int J Mol Sci	10.3390/ijms18071526	2017
Pathogenicity	Effect of coumarin on glucose uptake by anaerobic rumen fungi in the presence and absence of Methanobrevibacter smithii.	Cansunar E, Richardson AJ, Wallace G, Stewart CS.	FEMS Microbiol Lett	10.1111/j.1574-6968.1990.tb13970.x	1990
	Resistant starch intake facilitates weight loss in humans by reshaping the gut microbiota.	Li H, Zhang L, Li J, Wu Q, Qian L, He J, Ni Y, Kovatcheva-Datchary P, Yuan R, Liu S, Shen L, Zhang M, Sheng B, Li P, Kang K, Wu L, Fang Q, Long X, Wang X, Li Y, Ye Y, Ye J, Bao Y, Zhao Y, Xu G, Liu X, Panagiotou G, Xu A, Jia W.	Nat Metab	10.1038/s42255-024-00988-y	2024
	Immunomodulating Activity and Therapeutic Effects of Short Chain Fatty Acids and Tryptophan Post-biotics in Inflammatory Bowel Disease.	Russo E, Giudici F, Fiorindi C, Ficari F, Scaringi S, Amedei A.	Front Immunol	10.3389/fimmu.2019.02754	2019
	Membrane Lipid Composition and Amino Acid Excretion Patterns of Methanothermococcus okinawensis Grown in the Presence of Inhibitors Detected in the Enceladian Plume.	Taubner RS, Baumann LMF, Bauersachs T, Clifford EL, Mahnert B, Reischl B, Seifert R, Peckmann J, Rittmann SKR, Birgel D.	Life (Basel)	10.3390/life9040085	2019
	Production of Citrate by Anaerobic Fungi in the Presence of Co-culture Methanogens as Revealed by (1)H NMR Spectrometry.	Cheng YF, Jin W, Mao SY, Zhu WY.	Asian-Australas J Anim Sci	10.5713/ajas.2013.13134	2013
	Gut Microbiota Composition and Predicted Microbial Metabolic Pathways of Obesity Prone and Obesity Resistant Outbred Sprague-Dawley CD Rats May Account for Differences in Their Phenotype.	Obanda DN, Keenan MJ, Page R, Raggio AM, Taylor CM, Marx BD, Stout RW, Guice J, Luo M, Welsh DA, Coulon D, Husseneder C.	Front Nutr	10.3389/fnut.2021.746515	2021
	Colonic Transit Time Is a Driven Force of the Gut Microbiota Composition and Metabolism: In Vitro Evidence.	Tottey W, Feria-Gervasio D, Gaci N, Laillet B, Pujos E, Martin JF, Sebedio JL, Sion B, Jarrige JF, Alric M, Brugere JF.	J Neurogastroenterol Motil	10.5056/jnm16042	2017
Metabolism	Completion of the gut microbial epi-bile acid pathway.	Doden HL, Wolf PG, Gaskins HR, Anantharaman K, Alves JMP, Ridlon JM.	Gut Microbes	10.1080/19490976.2021.1907271	2021
Genetics	Metabolic Modeling Elucidates the Transactions in the Rumen Microbiome and the Shifts Upon Virome Interactions.	Islam MM, Fernando SC, Saha R.	Front Microbiol	10.3389/fmicb.2019.02412	2019
	Effect of Fecal Microbiota Transplantation on 8-Week Remission in Patients With Ulcerative Colitis: A Randomized Clinical Trial.	Costello SP, Hughes PA, Waters O, Bryant RV, Vincent AD, Blatchford P, Katsikeros R, Makanyanga J, Campaniello MA, Mavrangelos C, Rosewarne CP, Bickley C, Peters C, Schoeman MN, Conlon MA, Roberts-Thomson IC, Andrews JM.	JAMA	10.1001/jama.2018.20046	2019
Metabolism	Comparative Analysis of Methanogenic Communities in Different Laboratory-Scale Anaerobic Digesters.	Ziganshin AM, Ziganshina EE, Kleinsteuber S, Nikolausz M.	Archaea	10.1155/2016/3401272	2016
Metabolism	Gut microbiota of obese subjects with Prader-Willi syndrome is linked to metabolic health.	Olsson LM, Poitou C, Tremaroli V, Coupaye M, Aron-Wisnewsky J, Backhed F, Clement K, Caesar R.	Gut	10.1136/gutjnl-2019-319322	2020
	Strategies to promote abundance of Akkermansia muciniphila, an emerging probiotics in the gut, evidence from dietary intervention studies.	Zhou K.	J Funct Foods	10.1016/j.jff.2017.03.045	2017
	Influence of the microbiome, diet and genetics on inter-individual variation in the human plasma metabolome.	Chen L, Zhernakova DV, Kurilshikov A, Andreu-Sanchez S, Wang D, Augustijn HE, Vich Vila A, Lifelines Cohort Study, Weersma RK, Medema MH, Netea MG, Kuipers F, Wijmenga C, Zhernakova A, Fu J.	Nat Med	10.1038/s41591-022-02014-8	2022
	The Development of a Novel qPCR Assay-Set for Identifying Fecal Contamination Originating from Domestic Fowls and Waterfowl in Israel.	Ohad S, Ben-Dor S, Prilusky J, Kravitz V, Dassa B, Chalifa-Caspi V, Kashi Y, Rorman E.	Front Microbiol	10.3389/fmicb.2016.00145	2016
	Comparison of the gut microbiota of people in France and Saudi Arabia.	Yasir M, Angelakis E, Bibi F, Azhar EI, Bachar D, Lagier JC, Gaborit B, Hassan AM, Jiman-Fatani AA, Alshali KZ, Robert C, Dutour A, Raoult D.	Nutr Diabetes	10.1038/nutd.2015.3	2015
	Effects of the gut microbiota on host adiposity are modulated by the short-chain fatty-acid binding G protein-coupled receptor, Gpr41.	Samuel BS, Shaito A, Motoike T, Rey FE, Backhed F, Manchester JK, Hammer RE, Williams SC, Crowley J, Yanagisawa M, Gordon JI.	Proc Natl Acad Sci U S A	10.1073/pnas.0808567105	2008
	Characterization of Microbiota in Children with Chronic Functional Constipation.	de Meij TG, de Groot EF, Eck A, Budding AE, Kneepkens CM, Benninga MA, van Bodegraven AA, Savelkoul PH.	PLoS One	10.1371/journal.pone.0164731	2016
Pathogenicity	Insight into the intestinal microbiome of farrowing sows following the administration of garlic (Allium sativum) extract and probiotic bacteria cultures under farming conditions.	Satora M, Magdziarz M, Rzasa A, Rypula K, Ploneczka-Janeczko K.	BMC Vet Res	10.1186/s12917-020-02659-y	2020
Genetics	Shifts in the Human Gut Microbiota Structure Caused by Quadruple Helicobacter pylori Eradication Therapy.	Olekhnovich EI, Manolov AI, Samoilov AE, Prianichnikov NA, Malakhova MV, Tyakht AV, Pavlenko AV, Babenko VV, Larin AK, Kovarsky BA, Starikova EV, Glushchenko OE, Safina DD, Markelova MI, Boulygina EA, Khusnutdinova DR, Malanin SY, Abdulkhakov SR, Abdulkhakov RA, Grigoryeva TV, Kostryukova ES, Govorun VM, Ilina EN.	Front Microbiol	10.3389/fmicb.2019.01902	2019
Metabolism	A probiotic modulates the microbiome and immunity in multiple sclerosis.	Tankou SK, Regev K, Healy BC, Tjon E, Laghi L, Cox LM, Kivisakk P, Pierre IV, Hrishikesh L, Gandhi R, Cook S, Glanz B, Stankiewicz J, Weiner HL.	Ann Neurol	10.1002/ana.25244	2018
Phylogeny	Breeding farm, level of feeding and presence of antibiotics in the feed influence rabbit cecal microbiota.	Velasco-Galilea M, Guivernau M, Piles M, Vinas M, Rafel O, Sanchez A, Ramayo-Caldas Y, Gonzalez-Rodriguez O, Sanchez JP.	Anim Microbiome	10.1186/s42523-020-00059-z	2020
Metabolism	Cocultivation of Anaerobic Fungi with Rumen Bacteria Establishes an Antagonistic Relationship.	Swift CL, Louie KB, Bowen BP, Hooker CA, Solomon KV, Singan V, Daum C, Pennacchio CP, Barry K, Shutthanandan V, Evans JE, Grigoriev IV, Northen TR, O'Malley MA.	mBio	10.1128/mbio.01442-21	2021
Metabolism	Chromatinization of Escherichia coli with archaeal histones.	Rojec M, Hocher A, Stevens KM, Merkenschlager M, Warnecke T.	Elife	10.7554/elife.49038	2019
Genetics	Methods in microbiome research: Past, present, and future.	Gotschlich EC, Colbert RA, Gill T.	Best Pract Res Clin Rheumatol	10.1016/j.berh.2020.101498	2019
Phylogeny	Species-level functional profiling of metagenomes and metatranscriptomes.	Franzosa EA, McIver LJ, Rahnavard G, Thompson LR, Schirmer M, Weingart G, Lipson KS, Knight R, Caporaso JG, Segata N, Huttenhower C.	Nat Methods	10.1038/s41592-018-0176-y	2018
Metabolism	Monitoring bacterial community of human gut microbiota reveals an increase in Lactobacillus in obese patients and Methanogens in anorexic patients.	Armougom F, Henry M, Vialettes B, Raccah D, Raoult D.	PLoS One	10.1371/journal.pone.0007125	2009
Metabolism	Effect of exogenous fibrolytic enzymes and ammonia fiber expansion on the fermentation of wheat straw in an artificial rumen system (RUSITEC)1.	Saleem AM, Ribeiro GO, Sanderson H, Alipour D, Brand T, Hunerberg M, Yang WZ, Santos LV, McAllister TA.	J Anim Sci	10.1093/jas/skz224	2019
Metabolism	MetaGeneAnnotator: detecting species-specific patterns of ribosomal binding site for precise gene prediction in anonymous prokaryotic and phage genomes.	Noguchi H, Taniguchi T, Itoh T.	DNA Res	10.1093/dnares/dsn027	2008
	Methane Medicine: A Rising Star Gas with Powerful Anti-Inflammation, Antioxidant, and Antiapoptosis Properties.	Jia Y, Li Z, Liu C, Zhang J.	Oxid Med Cell Longev	10.1155/2018/1912746	2018
Metabolism	Comparison of enteric methane yield and diversity of ruminal methanogens in cattle and buffaloes fed on the same diet.	Malik PK, Trivedi S, Mohapatra A, Kolte AP, Sejian V, Bhatta R, Rahman H.	PLoS One	10.1371/journal.pone.0256048	2021
	The Microbial Ecosystem Distinguishes Chronically Diseased Tissue from Adjacent Tissue in the Sigmoid Colon of Chronic, Recurrent Diverticulitis Patients.	Schieffer KM, Sabey K, Wright JR, Toole DR, Drucker R, Tokarev V, Harris LR, Deiling S, Eshelman MA, Hegarty JP, Yochum GS, Koltun WA, Lamendella R, Stewart DB.	Sci Rep	10.1038/s41598-017-06787-8	2017
	Assessment of Ruminal Bacterial and Archaeal Community Structure in Yak (Bos grunniens).	Zhou Z, Fang L, Meng Q, Li S, Chai S, Liu S, Schonewille JT.	Front Microbiol	10.3389/fmicb.2017.00179	2017
	Pathways and functions of gut microbiota metabolism impacting host physiology.	Krishnan S, Alden N, Lee K.	Curr Opin Biotechnol	10.1016/j.copbio.2015.08.015	2015
Enzymology	Enzymatic Antioxidant Systems in Early Anaerobes: Theoretical Considerations.	Slesak I, Slesak H, Zimak-Piekarczyk P, Rozpadek P.	Astrobiology	10.1089/ast.2015.1328	2016
	The oral microflora in obesity and type-2 diabetes.	Shillitoe E, Weinstock R, Kim T, Simon H, Planer J, Noonan S, Cooney R.	J Oral Microbiol	10.3402/jom.v4i0.19013	2012
	Associative patterns among anaerobic fungi, methanogenic archaea, and bacterial communities in response to changes in diet and age in the rumen of dairy cows.	Kumar S, Indugu N, Vecchiarelli B, Pitta DW.	Front Microbiol	10.3389/fmicb.2015.00781	2015
Genetics	Metatranscriptome of human faecal microbial communities in a cohort of adult men.	Abu-Ali GS, Mehta RS, Lloyd-Price J, Mallick H, Branck T, Ivey KL, Drew DA, DuLong C, Rimm E, Izard J, Chan AT, Huttenhower C.	Nat Microbiol	10.1038/s41564-017-0084-4	2018
Cultivation	Mutual Exclusion of Methanobrevibacter Species in the Human Gut Microbiota Facilitates Directed Cultivation of a Candidatus Methanobrevibacter Intestini Representative.	Low A, Lee JKY, Gounot JS, Ravikrishnan A, Ding Y, Saw WY, Tan LWL, Moong DKN, Teo YY, Nagarajan N, Seedorf H	Microbiol Spectr	10.1128/spectrum.00849-22	2022
Genetics	Complete Genome Sequence of Methanobrevibacter smithii Strain KB11, Isolated from a Korean Fecal Sample.	Kim BC, Jeong H	Genome Announc	10.1128/genomeA.00038-18	2018
Enzymology	Relationship between rumen methanogens and methane production in dairy cows fed diets supplemented with a feed enzyme additive.	Zhou M, Chung YH, Beauchemin KA, Holtshausen L, Oba M, McAllister TA, Guan LL	J Appl Microbiol	10.1111/j.1365-2672.2011.05126.x	2011
Metabolism	High prevalence of Methanobrevibacter smithii and Methanosphaera stadtmanae detected in the human gut using an improved DNA detection protocol.	Dridi B, Henry M, El Khechine A, Raoult D, Drancourt M	PLoS One	10.1371/journal.pone.0007063	2009
Pathogenicity	Isolation and antimicrobial susceptibility testing of fecal strains of the archaeon Methanobrevibacter smithii.	Dermoumi HL, Ansorg RA	Chemotherapy	10.1159/000063219	2001
Phylogeny	Expanding the cultivable human archaeome: Methanobrevibacter intestini sp. nov. and strain Methanobrevibacter smithii 'GRAZ-2' from human faeces.	Weinberger V, Mohammadzadeh R, Blohs M, Kalt K, Mahnert A, Moser S, Cecovini M, Mertelj P, Zurabishvili T, Arora B, Wolf J, Shinde T, Madl T, Habisch H, Kolb D, Pernitsch D, Hingerl K, Metcalf W, Moissl-Eichinger C.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006751	2025
Phylogeny	Pseudobensingtonia carpini sp. nov., a novel yeast species isolated from plant leaves in China.	Chai CY, Song BY, Lu D, Zhang CY, Hui FL.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006642	2025
	Pseudokiefferiella ferringtoni sp. nov. (Diptera: Chironomidae: Diamesinae) from North America.	Makarchenko EA.	Zootaxa	10.11646/zootaxa.5493.4.10	2024
	Overview of the Genus Pseudocercospora on Vitaceous Plants in Korea with Introduction of Pseudocercospora neovitis sp. nov.	Aida AIN, Abasova L, Jang HR, Jeong JW, Choi IY, Shin HD.	Mycobiology	10.1080/12298093.2025.2518787	2025
	'Candidatus Pseudomonas auctus' sp. nov. JDE115 isolated from nodules on soybean (Glycines max).	Ali MS, Mony FTZ, Evans M, Rideout S, Haak D, Vieira P, Eisenback JD.	PLoS One	10.1371/journal.pone.0331920	2025
Pathogenicity	Candidatus Methanosphaera massiliense sp. nov., a methanogenic archaeal species found in a human fecal sample and prevalent in pigs and red kangaroos.	Pilliol V, Morsli M, Terlier L, Hassani Y, Malat I, Guindo CO, Davoust B, Lamglait B, Drancourt M, Aboudharam G, Grine G, Terrer E.	Microbiol Spectr	10.1128/spectrum.05141-22	2024

References

#464	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 861
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Methanobrevibacter smithii (DSM 861, ATCC 35061, JCM 30028)

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