Name: Fructobacillus durionis D-24
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6864

Type strain:

Species: Fructobacillus durionis

Strain Designation: D-24

Culture col. no.: DSM 19113, CCUG 49949, CIP 108761, LAB 1679, LMG 22556, JCM 17831, BCRC 81233, CECT 7089, NRIC 0663

Strain history: CIP <- 2005, CCUG <- 2004, LMG <- J. J. Leisner, Copenhagen, Denmark: strain D-24

NCBI tax ID(s): 1121906 (strain), 283737 (species)

SI-ID 96608

LMG 22556, CCUG 49949, CIP 108761, CECT 7089, DSM 19113, JCM 17831

Special Collections

Section

When using BacDive for research please cite our paper

Fructobacillus durionis D-24 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from Tempoyak.

Gram-positive
rod-shaped
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Fructobacillus*
	Species	**Fructobacillus durionis**
	Full Scientific Name (LPSN)	Fructobacillus durionis (Leisner et al. 2005) Endo and Okada 2008

Synonym

Leuconostoc durionis

Information on morphological and physiological properties Morphology

[Ref.: #31380]	Gram stain	positive
[Ref.: #118982]	Gram stain	positive
[Ref.: #125438]	Gram stain	positive Confidence in %91.853

[Ref.: #31380]	Cell shape	rod-shaped
[Ref.: #118982]	Cell shape	rod-shaped

[Ref.: #31380]	Motility	no
[Ref.: #118982]	Motility	no
[Ref.: #125438]	Motility	no Confidence in %95

[Ref.: #118982]

Hemolysis ability

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7900]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #7900]

Culture medium growth

[Ref.: #7900]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7900]

Culture medium composition

expand / minimize

[Ref.: #37642]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #37642]

Culture medium growth

[Ref.: #37642]

Culture medium composition

expand / minimize

[Ref.: #118982]

Culture medium

CIP Medium 40

[Ref.: #118982]

Culture medium growth

[Ref.: #118982]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #7900]	growth	30 °C
[Ref.: #31380]	growth	5.0-35 °C
[Ref.: #31380]	optimum	20 °C
[Ref.: #37642]	growth	30 °C
[Ref.: #67770]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #31380]			optimum	3.9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7900]	Oxygen tolerance	microaerophile
[Ref.: #31380]	Oxygen tolerance	aerobe

[Ref.: #31380]	Ability of spore formation	no
[Ref.: #125438]	Ability of spore formation	no Confidence in %91.946
[Ref.: #125439]	Ability of spore formation	no Confidence in %91.8

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31380]		NaCl		optimum	8	%

[Ref.: #31380]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31380]	fructose ChEBI	+	carbon source
[Ref.: #31380]	gluconate ChEBI	+	carbon source
[Ref.: #31380]	glucose ChEBI	+	carbon source
[Ref.: #31380]	maltose ChEBI	+	carbon source
[Ref.: #31380]	mannitol ChEBI	+	carbon source
[Ref.: #118982]	nitrate ChEBI	-	reduction
[Ref.: #118982]	nitrite ChEBI	-	reduction
[Ref.: #31380]	ribose ChEBI	+	carbon source
[Ref.: #31380]	sucrose ChEBI	+	carbon source
[Ref.: #31380]	trehalose ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #118982]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #118982]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #118982]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #118982]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #118982]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #118982]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #118982]	11438	-	+	-	-	-	+	-	-	-	-	+	+	-	-	-	+	-	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	acetoin degradation	100	3 of 3
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	chorismate metabolism	77.78	7 of 9
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	phenylalanine metabolism	69.23	9 of 13
[Ref.: #66794]	vitamin B1 metabolism	69.23	9 of 13
[Ref.: #66794]	aspartate and asparagine metabolism	66.67	6 of 9
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	pentose phosphate pathway	63.64	7 of 11
[Ref.: #66794]	C4 and CAM-carbon fixation	62.5	5 of 8
[Ref.: #66794]	ketogluconate metabolism	62.5	5 of 8
[Ref.: #66794]	NAD metabolism	61.11	11 of 18
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	pyrimidine metabolism	57.78	26 of 45
[Ref.: #66794]	photosynthesis	57.14	8 of 14
[Ref.: #66794]	degradation of sugar alcohols	56.25	9 of 16
[Ref.: #66794]	valine metabolism	55.56	5 of 9
[Ref.: #66794]	purine metabolism	54.26	51 of 94
[Ref.: #66794]	glycolysis	52.94	9 of 17
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	threonine metabolism	50	5 of 10
[Ref.: #66794]	gluconeogenesis	50	4 of 8
[Ref.: #66794]	sulfopterin metabolism	50	2 of 4
[Ref.: #66794]	isoleucine metabolism	50	4 of 8
[Ref.: #66794]	suberin monomers biosynthesis	50	1 of 2
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	tetrahydrofolate metabolism	50	7 of 14
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	flavin biosynthesis	46.67	7 of 15
[Ref.: #66794]	proline metabolism	45.45	5 of 11
[Ref.: #66794]	non-pathway related	44.74	17 of 38
[Ref.: #66794]	tryptophan metabolism	44.74	17 of 38
[Ref.: #66794]	d-mannose degradation	44.44	4 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	44.44	4 of 9
[Ref.: #66794]	serine metabolism	44.44	4 of 9
[Ref.: #66794]	oxidative phosphorylation	43.96	40 of 91
[Ref.: #66794]	ubiquinone biosynthesis	42.86	3 of 7
[Ref.: #66794]	reductive acetyl coenzyme A pathway	42.86	3 of 7
[Ref.: #66794]	propanol degradation	42.86	3 of 7
[Ref.: #66794]	mevalonate metabolism	42.86	3 of 7
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	glycine metabolism	40	4 of 10
[Ref.: #66794]	ethylmalonyl-CoA pathway	40	2 of 5
[Ref.: #66794]	glutamate and glutamine metabolism	39.29	11 of 28
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	37.5	3 of 8
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	33.33	2 of 6
[Ref.: #66794]	octane oxidation	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	lysine metabolism	33.33	14 of 42
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
[Ref.: #66794]	L-lactaldehyde degradation	33.33	1 of 3
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	histidine metabolism	31.03	9 of 29
[Ref.: #66794]	methionine metabolism	30.77	8 of 26
[Ref.: #66794]	propionate fermentation	30	3 of 10
[Ref.: #66794]	tyrosine metabolism	28.57	4 of 14
[Ref.: #66794]	degradation of pentoses	28.57	8 of 28
[Ref.: #66794]	citric acid cycle	28.57	4 of 14
[Ref.: #66794]	alanine metabolism	27.59	8 of 29
[Ref.: #66794]	vitamin B6 metabolism	27.27	3 of 11
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	25	1 of 4
[Ref.: #66794]	glycogen biosynthesis	25	1 of 4
[Ref.: #66794]	arginine metabolism	25	6 of 24
[Ref.: #66794]	isoprenoid biosynthesis	23.08	6 of 26
[Ref.: #66794]	urea cycle	23.08	3 of 13
[Ref.: #66794]	leucine metabolism	23.08	3 of 13
[Ref.: #66794]	degradation of hexoses	22.22	4 of 18
[Ref.: #66794]	glutathione metabolism	21.43	3 of 14
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7900]	Sample type/isolated from	Tempoyak
[Ref.: #7900]	Country	Malaysia
[Ref.: #7900]	Country ISO 3 Code	MYS
[Ref.: #7900]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Tempoyak (Malaysian acid-fermented condiment made from pulp of the durian fruit)
[Ref.: #67770]	Country	Malaysia
[Ref.: #67770]	Country ISO 3 Code	MYS
[Ref.: #67770]	Continent	Asia

[Ref.: #118982]	Sample type/isolated from	Traditional Malaysian acid-fermented condiment (tempoyak)
[Ref.: #118982]	Country	Malaysia
[Ref.: #118982]	Country ISO 3 Code	MYS
[Ref.: #118982]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Vegetable (incl. Grains)
#Engineered	#Food production	#Food
#Engineered	#Food production	#Fermented

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC519997 (>99% sequence identity) for Fructobacillus durionis subclade from Microbeatlas

Aquatic Samples	3
Soil Samples	4
Animal Samples	111
Plant Samples	11
Total Samples	129

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7900]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #118982]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Fructobacillus durionis JCM 17831 gene for 16S rRNA, partial sequence	LC519997	1448	GenBank ENA	283737 tax ID
[Ref.: #7900]	Leuconostoc durionis 16S rRNA gene, type strain LMG 22556T	AJ780981	1502	GenBank ENA	283737 tax ID
[Ref.: #20218]	Fructobacillus durionis DNA, 16S-23S rRNA intergenic spacer region, strain: LMG 22556	AB290444	350	GenBank ENA	283737 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Fructobacillus durionis DSM 19113	GCA_900112405	contig	GenBank ENA	283737 tax ID
[Ref.: #66792]	Fructobacillus durionis strain DSM 19113	283737.4	wgs	PATRIC	283737 tax ID	*
[Ref.: #66792]	Fructobacillus durionis DSM 19113	2603880187	draft	JGI IMG/M	283737 tax ID	*

[Ref.: #7900]	GC-content	44 mol%
[Ref.: #67770]	GC-content	44 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Fructobacillus durionis strain DSM 19113 PATRIC: 283737.4
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	91.853	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	83.159	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	91.946	yes
[Ref.: #125438]	aerobic	aerobicⓘ	no	87.948	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	94.012	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	95	yes

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Fructobacillus durionis DSM 19113 NCBI: GCA_900112405
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	91.8
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	61.2
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	82.5
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	microaerophile	88.2

Availability in culture collections External links

[Ref.: #7900]

Culture collection no.

DSM 19113, CCUG 49949, CIP 108761, LAB 1679, LMG 22556, JCM 17831, BCRC 81233, CECT 7089, NRIC 0663

[Ref.: #76329]

SI-ID 96608

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of the genus Leuconostoc and proposals of Fructobacillus fructosus gen. nov., comb. nov., Fructobacillus durionis comb. nov., Fructobacillus ficulneus comb. nov. and Fructobacillus pseudoficulneus comb. nov.	Endo A, Okada S	Int J Syst Evol Microbiol	10.1099/ijs.0.65609-0	2008	*
Phylogeny	Leuconostoc durionis sp. nov., a heterofermenter with no detectable gas production from glucose.	Leisner JJ, Vancanneyt M, Van der Meulen R, Lefebvre K, Engelbeen K, Hoste B, Laursen BG, Bay L, Rusul G, De Vuyst L, Swings J	Int J Syst Evol Microbiol	10.1099/ijs.0.63434-0	2005	*

References

#7900

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19113

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31380

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27693 (see below)

#37642 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#76329

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID96608.1 )

#118982 Collection of Institut Pasteur ; Curators of the CIP; CIP 108761

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

#27693

IJSEM 1267 2005 ( DOI 10.1099/ijs.0.63434-0 , PubMed 15879266 )

* These data were automatically processed and therefore are not curated

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Fructobacillus durionis strain DSM 19113

Fructobacillus durionis DSM 19113

Change proposal

Change proposal