Name: Fructobacillus fructosus 353
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6861

Type strain:

Species: Fructobacillus fructosus

Strain Designation: 353

Culture col. no.: DSM 20349, ATCC 13162, IFO 3516, NBRC 3516, NCIB 10784, CCUG 32246, NRRL B-2041, LMG 9498, NCIMB 10784, JCM 1119, BCRC 14019, CIP 102985, KCTC 3544, NCFB 2345, NRIC 1058, NCDO 2345

Strain history: CIP <- 1987, DSM <- K.O. Stetter <- Fujikii <- IFO <- Kodama: strain 353

NCBI tax ID(s): 930946 (strain), 1631 (species)

SI-ID 297006

LMG 9498, ATCC 13162, DSM 20349, IFO 3516, JCM 1119, NCFB 2345, NCFB 2347, NCIMB 10784, NRRL B-2041, NCIB 10784, CCUG 32246, CIP 102985, NCDO 2345, CCRC 14019, KCTC 3544, NBRC 3516, BCRC 12191, CCRC 12191, BCRC 14019, CECT 7088, CECT 5748

Section

Fructobacillus fructosus 353 is an aerobe, mesophilic bacterium that was isolated from flowers.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Fructobacillus*
	Species	**Fructobacillus fructosus**
	Full Scientific Name (LPSN)	Fructobacillus fructosus (Kodama 1956) Endo and Okada 2008

	Synonym	Leuconostoc fructosum
	Synonym	Lactobacillus fructosus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %96

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8753]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #8753]

Culture medium growth

[Ref.: #8753]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8753]

Culture medium composition

expand / minimize

[Ref.: #40495]

Culture medium

MEDIUM 44 - for Lactobacillus fructosus

[Ref.: #40495]

Culture medium growth

[Ref.: #40495]

Culture medium composition

expand / minimize

[Ref.: #119471]

Culture medium

CIP Medium 44

[Ref.: #119471]

Culture medium growth

[Ref.: #119471]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8753]	growth	30 °C
[Ref.: #40495]	growth	30 °C
[Ref.: #50927]	growth	37 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #8753]	Temperature range	mesophilic
[Ref.: #40495]	Temperature range	mesophilic
[Ref.: #50927]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #50927]	Oxygen tolerance	aerobe
[Ref.: #50927]	Oxygen tolerance	microaerophile

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %100

[Ref.: #8753]	Name of produced compound	NAD pyrophosphorylase
[Ref.: #8753]	Name of produced compound	phosphoribosyl nicotinamide transferase

[Ref.: #8753]	Murein short key	A11.04
[Ref.: #8753]	Murein types	A3alpha L-Lys-L-Ala

[Ref.: #67770]

Observation

Assay of Nicotinamide and fructose

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8753]	Sample type/isolated from	flowers

[Ref.: #50927]	Sample type/isolated from	Flowers

[Ref.: #67770]	Sample type/isolated from	Flowers

[Ref.: #119471]	Sample type/isolated from	Plant, Flowers
* marker position based on {}

Isolation sources categories

#Host Body-Site

#Plant

#Flower

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC062898 (>99% sequence identity) for Fructobacillus fructosus subclade from Microbeatlas

Aquatic Samples	49
Soil Samples	38
Animal Samples	1369
Plant Samples	93
Total Samples	1549

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8753]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119471]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Fructobacillus fructosus gene for 16S ribosomal RNA, partial sequence, strain: JCM 1119	LC062898	1494	ENA	1631 tax ID
[Ref.: #20218]	Leuconostoc fructosus 16S ribosomal RNA gene, partial sequence	AF360737	1475	ENA	930946 tax ID	*
[Ref.: #20218]	Fructobacillus fructosus gene for 16S rRNA, partial sequence, strain: NBRC 3516	AB680098	1475	ENA	1631 tax ID	*
[Ref.: #20218]	L.fructosus 16S rRNA gene	X61140	1332	ENA	930946 tax ID	*
[Ref.: #20218]	Fructobacillus fructosus DNA, 16S-23S rRNA intergenic spacer region, strain: NRIC 1058	AB290446	352	ENA	1631 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Fructobacillus fructosus NRIC 1058	GCA_001047095	scaffold	GenBank	1631 tax ID
[Ref.: #67770]	Fructobacillus fructosus KCTC 3544 DSM 20349	GCA_001438695	scaffold	GenBank	930946 tax ID
[Ref.: #67770]	Fructobacillus fructosus KCTC 3544	GCA_000185045	contig	GenBank	930946 tax ID
[Ref.: #66792]	Fructobacillus fructosus strain NRIC 1058	1631.5	wgs	PATRIC	1631 tax ID	*
[Ref.: #66792]	Fructobacillus fructosus NRIC 1058	2814123064	draft	JGI IMG/M	1631 tax ID	*
[Ref.: #66792]	Fructobacillus fructosus 353, KCTC 3544	651324031	draft	JGI IMG/M	930946 tax ID	*

[Ref.: #67770]

GC-content

43.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Fructobacillus fructosus KCTC 3544 DSM 20349 NCBI: GCA_001438695.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Fructobacillus fructosus KCTC 3544 PATRIC: 930946.3
[Ref.: #69480]	motile	no	96.231	no
[Ref.: #69480]	flagellated	no	98.561	no
[Ref.: #69480]	gram-positive	yes	92.309	no
[Ref.: #69480]	anaerobic	no	89.708	yes
[Ref.: #69480]	halophile	yes	92.816	no
[Ref.: #69480]	spore-forming	no	96.502	no
[Ref.: #69480]	glucose-util	yes	85.559	no
[Ref.: #69480]	aerobic	no	97.304	no
[Ref.: #69480]	thermophile	no	99.273	yes
[Ref.: #69480]	glucose-ferment	yes	87.806	no

Availability in culture collections External links

[Ref.: #8753]

Culture collection no.

DSM 20349, ATCC 13162, IFO 3516, NBRC 3516, NCIB 10784, CCUG 32246, NRRL B-2041, LMG 9498, NCIMB 10784, JCM 1119, BCRC 14019, CIP 102985, KCTC 3544, NCFB 2345, NRIC 1058, NCDO 2345

[Ref.: #76326]

SI-ID 297006

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Introduction of bifunctional alcohol/acetaldehyde dehydrogenase gene (adhE) in Fructobacillus fructosus settled its fructophilic characteristics.	Maeno S, Kajikawa A, Dicks L, Endo A	Res Microbiol	10.1016/j.resmic.2018.09.004	2018	*
Phylogeny	Reclassification of the genus Leuconostoc and proposals of Fructobacillus fructosus gen. nov., comb. nov., Fructobacillus durionis comb. nov., Fructobacillus ficulneus comb. nov. and Fructobacillus pseudoficulneus comb. nov.	Endo A, Okada S	Int J Syst Evol Microbiol	10.1099/ijs.0.65609-0	2008	*

References

#8753

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20349

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#40495 ; Curators of the CIP;
#50927 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 32246

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76326

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297006.1 )

#119471 Collection of Institut Pasteur ; Curators of the CIP; CIP 102985
* These data were automatically processed and therefore are not curated

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Fructobacillus fructosus KCTC 3544 DSM 20349

Fructobacillus fructosus KCTC 3544

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