Weissella cibaria (DSM 15878, CCUG 41967, LMG 17699)

Name: Weissella cibaria (DSM 15878, CCUG 41967, LMG 17699)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6857

Type strain

Strain Designation II-I-59

Culture col. no. DSM 15878 CCUG 41967 LMG 17699 CIP 107376 KCTC 3807 4 more

NCBI tax ID(s) 137591

Special Collections DSMZ CCUG JCM KCTC CIP

History <- D. Janssens, LMG <- G. Rusal <- J. J. Leisner; II-I-59 CCUG 41967 <-- LMG 17699 <-- J. Leisner II-I-59. <- CCUG <- LMG <- G Rusul <- J Leisner, II-I-59 CIP <- 2002, CCUG <- LMG <- J. Leisner, Weissella confusa: strain II-I-59

Links

Weissella cibaria II-I-59 is a microaerophile, mesophilic, rod-shaped prokaryote that was isolated from chili bo.

rod-shaped microaerophile mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 10764

LMG 17699,CCUG 41967,CIP 107376,KCTC 3807,KCTC 3817,DSM 15878,JCM 12495,CECT 7032,VTT E-082762

@ref 20215

Last LPSN update 2026-02-09 11:19:20

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Weissella

Species Weissella cibaria

Full scientific name Weissella cibaria Björkroth et al. 2002

Synonyms (1)

Weissella kimchii

BacDive ID	Other strains from **Weissella cibaria** (9)	Type strain
6856	W. cibaria CHJ3, DSM 14295, KCCM 41287, KCTC 3746, CIP ...
147453	W. cibaria CCUG 33604, LMG 18501
148155	W. cibaria CCUG 34912
149601	W. cibaria CCUG 38043
155278	W. cibaria CCUG 57177
165612	W. cibaria JCM 7777
172308	W. cibaria LBAE K39, CIP 110545
172309	W. cibaria CRBIP24.131
172310	W. cibaria CRBIP24.95

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
67771		rod-shaped
67771	positive
118272	positive	rod-shaped
125438			94
125438	positive		97.405
125439	positive		98

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6132	MRS MEDIUM (DSMZ Medium 11)	Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
34935	MEDIUM 40- for Lactobacillus and Leuconostoc		Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
118272	CIP Medium 40	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6132	positive	growth	30	mesophilic
34935	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic
67771	positive	growth	30	mesophilic
118272	positive	growth	15-37
118272	negative	growth	10
118272	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
6132	microaerophile
67771	microaerophile
118272	facultative anaerobe
125439	anaerobe	98.3

Spore formation

@ref	Spore formation	Confidence
125439		91.7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
118272	17632 ChEBI	nitrate	-	reduction
118272	17632 ChEBI	nitrate	+	respiration
118272	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
118272	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
118272	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
118272	alcohol dehydrogenase	+	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
118272	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
118272	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
118272	ornithine decarboxylase	-	4.1.1.17
118272	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	coenzyme A metabolism	100	4 of 4
66794	acetate fermentation	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	ribulose monophosphate pathway	100	2 of 2
66794	vitamin K metabolism	100	5 of 5
66794	acetoin degradation	100	3 of 3
66794	formaldehyde oxidation	100	3 of 3
66794	ppGpp biosynthesis	100	4 of 4
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	teichoic acid biosynthesis	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	chorismate metabolism	88.89	8 of 9
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	pentose phosphate pathway	81.82	9 of 11
66794	glycine betaine biosynthesis	80	4 of 5
66794	cellulose degradation	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	glycogen biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	NAD metabolism	72.22	13 of 18
66794	propanol degradation	71.43	5 of 7
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	pyrimidine metabolism	71.11	32 of 45
66794	starch degradation	70	7 of 10
66794	phenylalanine metabolism	69.23	9 of 13
66794	purine metabolism	68.09	64 of 94
66794	valine metabolism	66.67	6 of 9
66794	enterobactin biosynthesis	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	d-xylose degradation	63.64	7 of 11
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	ketogluconate metabolism	62.5	5 of 8
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	gluconeogenesis	62.5	5 of 8
66794	vitamin B1 metabolism	61.54	8 of 13
66794	3-chlorocatechol degradation	60	3 of 5
66794	threonine metabolism	60	6 of 10
66794	methylglyoxal degradation	60	3 of 5
66794	Entner Doudoroff pathway	60	6 of 10
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	methionine metabolism	57.69	15 of 26
66794	photosynthesis	57.14	8 of 14
66794	degradation of pentoses	57.14	16 of 28
66794	CO2 fixation in Crenarchaeota	55.56	5 of 9
66794	serine metabolism	55.56	5 of 9
66794	arginine metabolism	54.17	13 of 24
66794	urea cycle	53.85	7 of 13
66794	glycolysis	52.94	9 of 17
66794	oxidative phosphorylation	51.65	47 of 91
66794	CMP-KDO biosynthesis	50	2 of 4
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	adipate degradation	50	1 of 2
66794	non-pathway related	50	19 of 38
66794	phenylmercury acetate degradation	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	sulfopterin metabolism	50	2 of 4
66794	isoleucine metabolism	50	4 of 8
66794	suberin monomers biosynthesis	50	1 of 2
66794	cysteine metabolism	50	9 of 18
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	lipid metabolism	48.39	15 of 31
66794	glutamate and glutamine metabolism	46.43	13 of 28
66794	isoprenoid biosynthesis	46.15	12 of 26
66794	degradation of hexoses	44.44	8 of 18
66794	d-mannose degradation	44.44	4 of 9
66794	degradation of sugar acids	44	11 of 25
66794	citric acid cycle	42.86	6 of 14
66794	tetrahydrofolate metabolism	42.86	6 of 14
66794	mevalonate metabolism	42.86	3 of 7
66794	glutathione metabolism	42.86	6 of 14
66794	alanine metabolism	41.38	12 of 29
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	O-antigen biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	tyrosine metabolism	35.71	5 of 14
66794	tryptophan metabolism	34.21	13 of 38
66794	L-lactaldehyde degradation	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	lysine metabolism	33.33	14 of 42
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	octane oxidation	33.33	1 of 3
66794	ascorbate metabolism	31.82	7 of 22
66794	degradation of sugar alcohols	31.25	5 of 16
66794	sulfate reduction	30.77	4 of 13
66794	myo-inositol biosynthesis	30	3 of 10
66794	glycine metabolism	30	3 of 10
66794	reductive acetyl coenzyme A pathway	28.57	2 of 7
66794	proline metabolism	27.27	3 of 11
66794	vitamin B6 metabolism	27.27	3 of 11
66794	androgen and estrogen metabolism	25	4 of 16
66794	dTDPLrhamnose biosynthesis	25	2 of 8
66794	toluene degradation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	leucine metabolism	23.08	3 of 13
66794	4-hydroxymandelate degradation	22.22	2 of 9
66794	nitrate assimilation	22.22	2 of 9
66794	histidine metabolism	20.69	6 of 29

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
118272	-	+	-	-	-	-	-	-	-	-	+	+	-	+	-	-	+	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
6132	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	+	-	+	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Food

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
6132	chili bo		Malaysia	MYS	Asia
55282	Chili Bo		Malaysia	MYS	Asia
67770	Chilli Bo		Malaysia	MYS	Asia
67771	From chili bo		Malaysia	MYS	Asia
118272	Food	Chile Bo	Malaysia	MYS	Asia

Taxonmaps

69479

Global distribution of 16S sequence LC096236 (>99% sequence identity) for Weissella from Microbeatlas

Aquatic Samples	3467
Soil Samples	2011
Animal Samples	36370
Plant Samples	2026
Total Samples	43874

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
6132	yes, in single cases	yes, in single cases	1	Risk group (German classification) According to TRBA 466
118272			1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67771	ASM540552v1 assembly for Weissella cibaria JCM 12495	contig	GCA_005405525	137591.149	8115665147	137591	74.08

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
6132	Weissella cibaria partial 16S rRNA gene, strain LMG 17699T	AJ295989	1529	137591
67771	Weissella cibaria gene for 16S ribosomal RNA, partial sequence, strain: JCM 12495	LC096236	1516	137591
124043	Weissella cibaria gene for 16S rRNA, partial sequence, strain: NBRC 106073.	AB682356	1502	137591

GC content

@ref	GC-content (mol%)	Method
6132	44-45
67770	44	thermal denaturation, midpoint method (Tm)
67771	44.0-45.0	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Weissella cibaria JCM 12495
NCBI: GCA_005405525

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	91.70	no
125439	motility	BacteriaNetⓘ	no	84.90	no
125439	gram_stain	BacteriaNetⓘ	positive	98.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	98.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Weissella cibaria strain JCM 12495
PATRIC: 137591.149

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	97.41	yes
125438	anaerobic	anaerobicⓘ	no	81.34	no
125438	spore-forming	spore-formingⓘ	no	88.80	no
125438	aerobic	aerobicⓘ	no	88.52	no
125438	thermophilic	thermophileⓘ	no	95.30	no
125438	flagellated	motile2+ⓘ	no	94.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Bis-Thiourea Quaternary Ammonium Salts as Potential Agents against Bacterial Strains from Food and Environmental Matrices.	Bonomo MG, Giura T, Salzano G, Longo P, Mariconda A, Catalano A, Iacopetta D, Ceramella J, Sinicropi MS, Saturnino C.	Antibiotics (Basel)	10.3390/antibiotics10121466	2021
Biotechnology	Sourdough authentication: quantitative PCR to detect the lactic acid bacterial microbiota in breads.	Pontonio E, Di Cagno R, Mahony J, Lanera A, De Angelis M, van Sinderen D, Gobbetti M.	Sci Rep	10.1038/s41598-017-00549-2	2017
	Safety Evaluation of Weissella cibaria JW15 by Phenotypic and Genotypic Property Analysis.	Jang YJ, Gwon HM, Jeong WS, Yeo SH, Kim SY.	Microorganisms	10.3390/microorganisms9122450	2021
	Acid tolerance and morphological characteristics of five Weissella cibaria bacteriophages isolated from kimchi.	Kong SJ, Park JH.	Food Sci Biotechnol	10.1007/s10068-019-00723-4	2020
	Characteristics on host specificity, infection, and temperature stability of Weissella phages from watery kimchi.	Lee S, Park JH.	Food Sci Biotechnol	10.1007/s10068-021-00920-0	2021
Genetics	Safety Evaluation of Oral Care Probiotics Weissella cibaria CMU and CMS1 by Phenotypic \|and Genotypic Analysis.	Kang MS, Yeu JE, Hong SP.	Int J Mol Sci	10.3390/ijms20112693	2019
Genetics	Genomic Analyses of Weissella cibaria W25, a Potential Bacteriocin-Producing Strain Isolated from Pasture in Campos das Vertentes, Minas Gerais, Brazil.	Teixeira CG, Rodrigues RDS, Yamatogi RS, Lucau-Danila A, Drider D, Nero LA, de Carvalho AF.	Microorganisms	10.3390/microorganisms10020314	2022
	Modeling of starter cultures growth for improved Thai sausage fermentation and cost estimating for sausage preparation and transportation.	Sriphochanart W, Skolpap W.	Food Sci Nutr	10.1002/fsn3.708	2018
Biotechnology	Effect of Bacteriophages on Viability and Growth of Co-cultivated Weissella and Leuconostoc in Kimchi Fermentation.	Kong SJ, Park JH	J Microbiol Biotechnol	10.4014/jmb.1902.02023	2019
Phylogeny	Genetic evidence that Weissella kimchii Choi et al. 2002 is a later heterotypic synonym of Weissella cibaria Bjorkroth et al. 2002.	Ennahar S, Cai Y	Int J Syst Evol Microbiol	10.1099/ijs.0.02783-0	2004
Genetics	Description and Genomic Characteristics of Weissella fermenti sp. nov., Isolated from Kimchi.	Lee JK, Baek JH, Han DM, Lee SH, Kim SY, Jeon CO.	J Microbiol Biotechnol	10.4014/jmb.2306.06010	2023

References

#6132	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15878
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#34935	; Curators of the CIP;
#55282	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 41967
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#118272	Collection of Institut Pasteur ; Curators of the CIP; CIP 107376
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Weissella cibaria (DSM 15878, CCUG 41967, LMG 17699)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Antibiotic resistance

Metabolite tests

Enzymes

Pathway annotation

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_005405525

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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