Name: Leuconostoc gasicomitatum TB1-10
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6838

Type strain:

Species: Leuconostoc gasicomitatum

Strain Designation: TB1-10

Culture col. no.: DSM 15947, CCUG 46042, LMG 18811, JCM 12535, CECT 5767

Strain history: LMG 18811 <-- P. Vandamme R-2564 <-- K. J. Björkroth TB1-10.

NCBI tax ID(s): 762550 (strain), 115778 (species)

SI-ID 12467

LMG 18811, CCUG 46042, KCTC 3752, CCUG43389, CECT 5767, DSM 15947, JCM 12535, VTT E-042568

Section

Leuconostoc gasicomitatum TB1-10 is an anaerobe, Gram-positive bacterium that was isolated from modified-atmosphere packaged, tomato-marinated broiler meat strips.

Gram-positive
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Leuconostoc*
	Species	**Leuconostoc gasicomitatum**
	Full Scientific Name (LPSN)	Leuconostoc gasicomitatum Björkroth et al. 2001

Synonym

Leuconostoc gelidum subsp. gasicomitatum

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %96.661

[Ref.: #69480]	Motility	no Confidence in %95.912

[Ref.: #57035]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6204]

Culture medium

MRS pre-reduced (DSMZ Medium 11b)

[Ref.: #6204]

Culture medium growth

[Ref.: #6204]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #6204]	growth	22 °C
[Ref.: #57035]	growth	20-30 °C
[Ref.: #67770]	growth	22 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6204]	Oxygen tolerance	anaerobe
[Ref.: #6204]	Oxygen tolerance	microaerophile
[Ref.: #57035]	Oxygen tolerance	facultative anaerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %94.633
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #6204]	Murein short key	A11.05
[Ref.: #6204]	Murein types	A3alpha L-Lys-L-Ala₂

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #6204]	14336	-	-	-	-	+	+	+	-	-	-	-	+	+	+	-	-	-	-	-	-	-	+	+	-	-	+	-	+	+	-	+	+	+	-	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6204]	Sample type/isolated from	modified-atmosphere packaged, tomato-marinated broiler meat strips
[Ref.: #6204]	Geographic location (country and/or sea, region)	Helsinki
[Ref.: #6204]	Country	Finland
[Ref.: #6204]	Country ISO 3 Code	FIN
[Ref.: #6204]	Continent	Europe

[Ref.: #57035]	Sample type/isolated from	Tomato-marinated broiler meat strips
[Ref.: #57035]	Geographic location (country and/or sea, region)	Helsinki
[Ref.: #57035]	Country	Finland
[Ref.: #57035]	Country ISO 3 Code	FIN
[Ref.: #57035]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	MA-packaged, tomato-marinated broiler meat strips
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Bottled, canned, packed food
#Engineered	#Food production	#Meat
#Host	#Birds	#Chicken

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC483550 (>99% sequence identity) for Leuconostoc from Microbeatlas

Aquatic Samples	487
Soil Samples	427
Animal Samples	2225
Plant Samples	290
Total Samples	3429

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6204]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6204]	Leuconostoc gasicomitatum strain LMG 18811 16S small subunit ribosomal RNA gene, partial sequence	AF231131	1494	GenBank ENA	762550 tax ID
[Ref.: #67770]	Leuconostoc gelidum subsp. gasicomitatum gene for 16S ribosomal RNA, partial sequence	LC483550	1489	GenBank ENA	115778 tax ID
[Ref.: #124043]	Leuconostoc gasicomitatum DNA, 16S-23S rRNA intergenic spacer region, strain: JCM 12535.	AB290438	380	GenBank ENA	115778 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Leuconostoc gasicomitatum LMG 18811 type strain: LMG 18811	GCA_000196855	complete	GenBank ENA	762550 tax ID	*
[Ref.: #66792]	Leuconostoc gasicomitatum LMG 18811	762550.4	complete	PATRIC	762550 tax ID	*
[Ref.: #66792]	Leuconostoc gelidum gasicomitatum LMG 18811	649633064	complete	JGI IMG/M	762550 tax ID	*

[Ref.: #6204]	GC-content	37 mol%
[Ref.: #67770]	GC-content	37 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Leuconostoc gelidum subsp. gasicomitatum LMG 18811 type strain: LMG 18811 NCBI: GCA_000196855.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Leuconostoc gelidum subsp. gasicomitatum LMG 18811 type strain: LMG 18811 NCBI: GCA_000196855.1
[Ref.: #69480]	motile	no	95.912	no
[Ref.: #69480]	flagellated	no	98.012	no
[Ref.: #69480]	gram-positive	yes	96.661	no
[Ref.: #69480]	anaerobic	no	90.681	no
[Ref.: #69480]	aerobic	no	96.438	yes
[Ref.: #69480]	halophile	yes	94.74	no
[Ref.: #69480]	spore-forming	no	94.633	no
[Ref.: #69480]	thermophile	no	99.871	yes
[Ref.: #69480]	glucose-util	yes	86.171	no
[Ref.: #69480]	glucose-ferment	yes	91.255	no

Availability in culture collections External links

[Ref.: #6204]

Culture collection no.

DSM 15947, CCUG 46042, LMG 18811, JCM 12535, CECT 5767

[Ref.: #76303]

SI-ID 12467

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Leuconostoc gasicomitatum as Leuconostoc gelidum subsp. gasicomitatum comb. nov., description of Leuconostoc gelidum subsp. aenigmaticum subsp. nov., designation of Leuconostoc gelidum subsp. gelidum subsp. nov. and emended description of Leuconostoc gelidum.	Rahkila R, De Bruyne K, Johansson P, Vandamme P, Bjorkroth J	Int J Syst Evol Microbiol	10.1099/ijs.0.058263-0	2014	*
Phylogeny	Leuconostoc miyukkimchii sp. nov., isolated from brown algae (Undaria pinnatifida) kimchi.	Lee SH, Park MS, Jung JY, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.032367-0	2011	*
Genetics	Genome sequence of a food spoilage lactic acid bacterium, Leuconostoc gasicomitatum LMG 18811T, in association with specific spoilage reactions.	Johansson P, Paulin L, Sade E, Salovuori N, Alatalo ER, Bjorkroth KJ, Auvinen P	Appl Environ Microbiol	10.1128/AEM.00102-11	2011	*

References

#6204

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15947

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#57035 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 46042

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76303

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID12467.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Leuconostoc gelidum subsp. gasicomitatum LMG 18811 type strain: LMG 18811

Leuconostoc gelidum subsp. gasicomitatum LMG 18811 type strain: LMG 18811

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