Name: Leptospira yanagawae Saopaulo
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6808

Type strain:

Species: Leptospira yanagawae

Strain Designation: Saopaulo

Culture col. no.: DSM 21522, ATCC 700523

Strain history: <- CDC <- ATCC <- R. S. Weyant <- Inst. Trop. Hyg. Amsterdam

NCBI tax ID(s): 293069 (species)

Section

Leptospira yanagawae Saopaulo is an aerobe, Gram-negative, motile bacterium that was isolated from water.

Gram-negative
motile
spiral-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Spirochaetota*
	Class	*Spirochaetia*
	Order	*Leptospirales*
	Family	*Leptospiraceae*
	Genus	*Leptospira*
	Species	**Leptospira yanagawae**
	Full Scientific Name (LPSN)	Leptospira yanagawae Smythe et al. 2013

Information on morphological and physiological properties Morphology

[Ref.: #30912]	Gram stain	negative

[Ref.: #30912]	Cell shape	spiral-shaped

[Ref.: #30912]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #30912]			growth	12-36 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30912]

Oxygen tolerance

aerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15759]	Sample type/isolated from	water
[Ref.: #15759]	Country	Brazil
[Ref.: #15759]	Country ISO 3 Code	BRA
[Ref.: #15759]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY631882 (>99% sequence identity) for Leptospira from Microbeatlas

Aquatic Samples	3560
Soil Samples	824
Animal Samples	382
Plant Samples	195
Total Samples	4961

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15759]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15759]	Leptospira genomosp. 5 serovar Saopaulo strain Sao Paulo 16S ribosomal RNA gene, partial sequence	AY631882	1422	ENA	293070 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Leptospira yanagawae serovar Saopaulo str. Sao Paulo = ATCC 700523	GCA_000332475	contig	GenBank	1249483 tax ID	*
[Ref.: #66792]	Leptospira yanagawae serovar Saopaulo str. Sao Paulo = ATCC 700523	1249483.3	wgs	PATRIC	1249483 tax ID	*

[Ref.: #15759]	GC-content	37.9 mol%
[Ref.: #30912]	GC-content	37 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Leptospira yanagawae serovar Saopaulo str. Sao Paulo = ATCC 700523 PATRIC: 1249483.3
[Ref.: #69480]	motile	yes	85.246	yes
[Ref.: #69480]	gram-positive	no	98.12	yes
[Ref.: #69480]	anaerobic	no	95.964	yes
[Ref.: #69480]	aerobic	yes	80.099	yes
[Ref.: #69480]	halophile	no	92.439	no
[Ref.: #69480]	spore-forming	no	93.974	no
[Ref.: #69480]	glucose-util	yes	64.155	no
[Ref.: #69480]	flagellated	no	76.92	no
[Ref.: #69480]	thermophile	no	98.547	no
[Ref.: #69480]	glucose-ferment	no	88.947	no

Availability in culture collections External links

[Ref.: #15759]

Culture collection no.

DSM 21522, ATCC 700523

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Classification of Leptospira genomospecies 1, 3, 4 and 5 as Leptospira alstonii sp. nov., Leptospira vanthielii sp. nov., Leptospira terpstrae sp. nov. and Leptospira yanagawae sp. nov., respectively.	Smythe L, Adler B, Hartskeerl RA, Galloway RL, Turenne CY, Levett PN, The International Committee On Systematics Of Prokaryotes Subcommittee On The Taxonomy Of	Int J Syst Evol Microbiol	10.1099/ijs.0.047324-0	2012	*

References

#15759

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21522

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30912

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27242 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#27242

IJSEM 1859 2013 ( DOI 10.1099/ijs.0.047324-0 , PubMed 22984140 )

* These data were automatically processed and therefore are not curated

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Leptospira yanagawae serovar Saopaulo str. Sao Paulo = ATCC 700523

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