Leptospira broomii (DSM 21534, ATCC BAA-1107, KIT 5399)

Name: Leptospira broomii (DSM 21534, ATCC BAA-1107, KIT 5399)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6806

Type strain

Strain Designation 5399

Culture col. no. DSM 21534 ATCC BAA-1107 KIT 5399 5399

NCBI tax ID(s) 301541

Special Collections DSMZ

History DSMZ <- R. Galloway, CDC; strain 5399 {2008} <- P. N. Levett

Links

Leptospira broomii 5399 is a bacterium that was isolated from human patient with leptospirosis.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 290984

DSM 21534,ATCC BAA-1107

@ref 20215

Last LPSN update 2026-05-29 08:26:29

Domain Bacteria

Phylum Spirochaetota

Class Spirochaetia

Order Leptospirales

Family Leptospiraceae

Genus Leptospira

Species Leptospira broomii

Full scientific name Leptospira broomii Levett et al. 2006

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	93.083
125439	negative	98.147

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
15766	LEPTOSPIRA-MEDIUM (DSMZ Medium 1113)		Medium recipe at MediaDive	Name: LEPTOSPIRA-MEDIUM (DSMZ Medium 1113) Composition: Leptospira Medium Base EMJH 2.3 g/l Agarose 1.5 g/l Leptospira Enrichment EMJH Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
15766	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	90.374

Spore formation

@ref	Spore formation	Confidence
125439		99.304

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Infection	#Disease
#Infection	#Patient
#Host	#Human

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
15766	human patient with leptospirosis	Homo sapiens	Denmark	DNK	Europe

Taxonmaps

69479

Global distribution of 16S sequence AY796065 (>99% sequence identity) for Leptospira from Microbeatlas

Aquatic Samples	1106
Soil Samples	169
Animal Samples	1640
Plant Samples	92
Total Samples	3007

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15766	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	gls454050v02 assembly for Leptospira broomii serovar Hurstbridge str. 5399	contig	GCA_000243715	1049789.4	2541047153	1049789	67.81

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15766	Leptospira broomii strain 5399 16S ribosomal RNA gene, partial sequence	AY796065	1431		301541

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: gls454050v02 assembly for Leptospira broomii serovar Hurstbridge str. 5399
BV-BRC: 1049789.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	90.37	no
125439	gram_stain	BacteriaNetⓘ	negative	98.15	no
125439	motility	BacteriaNetⓘ	no	81.81	no
125439	spore_formation	BacteriaNetⓘ	no	99.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Leptospira broomii serovar Hurstbridge str. 5399
PATRIC: 1049789.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	93.08	no
125438	anaerobic	anaerobicⓘ	no	86.00	no
125438	spore-forming	spore-formingⓘ	no	84.36	no
125438	aerobic	aerobicⓘ	yes	77.45	no
125438	thermophilic	thermophileⓘ	no	92.94	yes
125438	flagellated	motile2+ⓘ	yes	54.53	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Leptospira broomii sp. nov., isolated from humans with leptospirosis.	Levett PN, Morey RE, Galloway RL, Steigerwalt AG	Int J Syst Evol Microbiol	10.1099/ijs.0.63783-0	2006

References

#15766	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21534
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Leptospira broomii (DSM 21534, ATCC BAA-1107, KIT 5399)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000243715

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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