Name: Leptospira santarosai 1342
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6801

Type strain:

Species: Leptospira santarosai

Strain Designation: 1342, LT 821, Shermani

Culture col. no.: DSM 21524, ATCC 43286

Strain history: <- R. Galloway, CDC; Shermani {2008} <- N. B. Gale

NCBI tax ID(s): 28183 (species)

SI-ID 41756

ATCC 43286

Other strains from Leptospira santarosai

Section

Leptospira santarosai 1342 is a bacterium that was isolated from spiney rat kidney, Proechimys semispinosus.

16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Spirochaetota*
	Class	*Spirochaetia*
	Order	*Leptospirales*
	Family	*Leptospiraceae*
	Genus	*Leptospira*
	Species	**Leptospira santarosai**
	Full Scientific Name (LPSN)	Leptospira santarosai Yasuda et al. 1987

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15760]	Sample type/isolated from	spiney rat kidney, Proechimys semispinosus
[Ref.: #15760]	Host species	Proechimys semispinosus
[Ref.: #15760]	Country	Panama
[Ref.: #15760]	Country ISO 3 Code	PAN
[Ref.: #15760]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Rodentia (Other)
#Host Body-Site	#Urogenital tract	#Kidney

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15760]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15760]	Leptospira santarosai serovar Shermani strain LT 821 16S ribosomal RNA gene, partial sequence	AY631883	1431	ENA	758847 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Leptospira santarosai serovar Shermani str. LT 821	GCA_000313175	contig	GenBank	758847 tax ID	*
[Ref.: #66792]	Leptospira santarosai serovar Shermani str. LT 821	758847.3	wgs	PATRIC	758847 tax ID	*

[Ref.: #15760]

GC-content

40.7 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Leptospira santarosai serovar Shermani str. LT 821 LT 821 NCBI: GCA_000313175.1
[Ref.: #69480]	motile	yes	88.796	no
[Ref.: #69480]	flagellated	no	77.109	no
[Ref.: #69480]	gram-positive	no	98.202	no
[Ref.: #69480]	anaerobic	no	93.88	no
[Ref.: #69480]	aerobic	yes	65.264	no
[Ref.: #69480]	halophile	no	93.579	no
[Ref.: #69480]	spore-forming	no	88.069	no
[Ref.: #69480]	glucose-util	yes	65.992	no
[Ref.: #69480]	thermophile	no	84.145	no
[Ref.: #69480]	glucose-ferment	no	86.259	no
[Ref.: #69480]	motile	yes	88.796	no
[Ref.: #69480]	flagellated	no	77.109	no
[Ref.: #69480]	gram-positive	no	98.202	no
[Ref.: #69480]	anaerobic	no	93.88	no
[Ref.: #69480]	aerobic	yes	65.264	no
[Ref.: #69480]	halophile	no	93.579	no
[Ref.: #69480]	spore-forming	no	88.069	no
[Ref.: #69480]	thermophile	no	84.145	no
[Ref.: #69480]	glucose-util	yes	65.992	no
[Ref.: #69480]	glucose-ferment	no	86.259	no

Availability in culture collections External links

[Ref.: #15760]

Culture collection no.

DSM 21524, ATCC 43286

[Ref.: #76269]

SI-ID 41756

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Factors associated with severity and mortality in patients with confirmed leptospirosis at a regional hospital in northern Taiwan.	Wang HK, Lee MH, Chen YC, Hsueh PR, Chang SC	J Microbiol Immunol Infect	10.1016/j.jmii.2018.05.005	2018	*
Phylogeny	Plurality of Leptospira strains on slaughtered animals suggest a broader concept of adaptability of leptospires to cattle.	Pinto PS, Pestana C, Medeiros MA, Lilenbaum W	Acta Trop	10.1016/j.actatropica.2017.04.032	2017	*
Metabolism	Leptospiral outer membrane protein LipL32 induces inflammation and kidney injury in zebrafish larvae.	Chang MY, Cheng YC, Hsu SH, Ma TL, Chou LF, Hsu HH, Tian YC, Chen YC, Sun YJ, Hung CC, Pan RL, Yang CW	Sci Rep	10.1038/srep27838	2016	*
Metabolism	LipL41, a hemin binding protein from Leptospira santarosai serovar Shermani.	Lin MH, Chang YC, Hsiao CD, Huang SH, Wang MS, Ko YC, Yang CW, Sun YJ	PLoS One	10.1371/journal.pone.0083246	2013	*
Genetics	Sequence of Leptospira santarosai serovar Shermani genome and prediction of virulence-associated genes.	Chou LF, Chen YT, Lu CW, Ko YC, Tang CY, Pan MJ, Tian YC, Chiu CH, Hung CC, Yang CW	Gene	10.1016/j.gene.2012.09.074	2012	*
Pathogenicity	Demographic and clinical features of leptospirosis: three-year experience in central Taiwan.	Lin PC, Chi CY, Ho MW, Chen CM, Ho CM, Wang JH	J Microbiol Immunol Infect		2008	*
Pathogenicity	Leptospirosis in Taiwan--an underestimated infectious disease.	Yang CW	Chang Gung Med J	3002/300202	2007	*
Metabolism	Leptospiral outer membrane protein induces extracellular matrix accumulation through a TGF-beta1/Smad-dependent pathway.	Tian YC, Chen YC, Hung CC, Chang CT, Wu MS, Phillips AO, Yang CW	J Am Soc Nephrol	10.1681/ASN.2006020159	2006	*
Pathogenicity	Upregulation of chemokine CXCL1/KC by leptospiral membrane lipoprotein preparation in renal tubule epithelial cells.	Hung CC, Chang CT, Chen KH, Tian YC, Wu MS, Pan MJ, Vandewalle A, Yang CW	Kidney Int	10.1038/sj.ki.5000362	2006	*
Pathogenicity	Toll-like receptor 2 mediates early inflammation by leptospiral outer membrane proteins in proximal tubule cells.	Yang CW, Hung CC, Wu MS, Tian YC, Chang CT, Pan MJ, Vandewalle A	Kidney Int	10.1038/sj.ki.5000119	2006	*
Metabolism	Leptospiral membrane proteins stimulate pro-inflammatory chemokines secretion by renal tubule epithelial cells through toll-like receptor 2 and p38 mitogen activated protein kinase.	Hung CC, Chang CT, Tian YC, Wu MS, Yu CC, Pan MJ, Vandewalle A, Yang CW	Nephrol Dial Transplant	10.1093/ndt/gfi316	2005	*
Metabolism	Omp52 is a growth-phase-regulated outer membrane protein of Leptospira santarosai serovar Shermani.	Hsieh WJ, Chang YF, Chen CS, Pan MJ	FEMS Microbiol Lett	10.1016/j.femsle.2004.12.021	2005	*
	Potential impact on kidney infection: a whole-genome analysis of Leptospira santarosai serovar Shermani.	Chou LF, Chen TW, Ko YC, Pan MJ, Tian YC, Chiu CH, Tang P, Hung CC, Yang CW	Emerg Microbes Infect	10.1038/emi.2014.78	2014	*

References

#15760

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21524

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#76269

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID41756.1 )

* These data were automatically processed and therefore are not curated

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Leptospira santarosai serovar Shermani str. LT 821 LT 821

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