Legionella pneumophila subsp. fraseri R50 is a microaerophile, Gram-negative, rod-shaped bacterium that was isolated from cooling tower.
Gram-negative rod-shaped microaerophile genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Legionellales |
| Family Legionellaceae |
| Genus Legionella |
| Species Legionella pneumophila subsp. fraseri |
| Full scientific name Legionella pneumophila subsp. fraseri Brenner et al. 1989 |
| BacDive ID | Other strains from Legionella pneumophila subsp. fraseri (1) | Type strain |
|---|---|---|
| 6726 | L. pneumophila subsp. fraseri DSM 7514, ATCC 33156, WDCM 00180, CCUG 13398, ... (type strain) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 17912 | BCYE-AGAR (DSMZ Medium 585) | Medium recipe at MediaDive | Name: BCYE AGAR (DSMZ Medium 585) Composition: OXOID Legionella CYE-Agar base | ||
| 38478 | MEDIUM 23 - for Afipia and Legionella | Distilled water make up to (1000.000 ml);Legionella agar (37.000 g);Legionella - enrichment mixture (10.000 ml) | |||
| 121901 | CIP Medium 23 | Medium recipe at CIP | |||
| 121901 | CIP Medium 748 | Medium recipe at CIP |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 17912 | catalase | + | 1.11.1.6 | |
| 121901 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 17912 | cytochrome-c oxidase | + | 1.9.3.1 | |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 121901 | oxidase | + | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 68382 | valine arylamidase | + | from API zym |
| Metadata FA analysis | |||||||||||||||||||||||||||||||||||||||||||||||||
| type of FA analysis | whole cell analysis | ||||||||||||||||||||||||||||||||||||||||||||||||
| method/protocol | CCUG | ||||||||||||||||||||||||||||||||||||||||||||||||
| @ref | 45944 | ||||||||||||||||||||||||||||||||||||||||||||||||
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| Metadata FA analysis | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| type of FA analysis | whole cell analysis | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| method/protocol | CCUG | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| @ref | 45944 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ATCC_33216 assembly for Legionella pneumophila subsp. fraseri ATCC 33216 | scaffold | 91892 | 69.05 | ||||
| 66792 | ASM158269v1 assembly for Legionella pneumophila ATCC 33216 | scaffold | 446 | 68.18 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Legionella pneumophila 16S ribosomal RNA, partial sequence | AH001696 | 135 | 446 | ||
| 20218 | Legionella pneumophila 16S rRNA sequence | M36026 | 1460 | 446 | ||
| 124043 | Legionella maceachernii 16S-23S ribosomal RNA intergenic spacer, partial sequence; and tRNA-Ala gene, complete sequence. | KM609984 | 382 | 91892 | ||
| 124043 | Legionella maceachernii 16S-23S ribosomal RNA intergenic spacer, partial sequence; and tRNA-Ile gene, complete sequence. | KM609985 | 397 | 91892 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.60 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 57.90 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 99.70 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 98.00 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 98.48 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 95.55 | no |
| 125438 | aerobic | aerobicⓘ | no | 76.83 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 91.41 | no |
| 125438 | thermophilic | thermophileⓘ | no | 94.69 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 61.44 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Development of a Multiplex-PCR Serotyping Assay for Characterizing Legionella pneumophila Serogroups Based on the Diversity of Lipopolysaccharide Biosynthetic Loci. | Nakaue R, Qin T, Morita M, Ren H, Chang B, Murai M, Amemura-Maekawa J, Ohnishi M. | J Clin Microbiol | 10.1128/jcm.00157-21 | 2021 | ||
| Use of Fourier-Transform Infrared Spectroscopy With IR Biotyper® System for Legionella pneumophila Serogroups Identification. | Pascale MR, Bisognin F, Mazzotta M, Girolamini L, Marino F, Dal Monte P, Cordovana M, Scaturro M, Ricci ML, Cristino S. | Front Microbiol | 10.3389/fmicb.2022.866426 | 2022 | ||
| Pathogenicity | Bacterial Long-Range Warfare: Aerial Killing of Legionella pneumophila by Pseudomonas fluorescens. | Corre MH, Mercier A, Bouteiller M, Khalil A, Ginevra C, Depayras S, Dupont C, Rouxel M, Gallique M, Grac L, Jarraud S, Giron D, Merieau A, Berjeaud JM, Verdon J. | Microbiol Spectr | 10.1128/spectrum.00404-21 | 2021 | |
| Enzymology | Electrophoretic mobility of Legionella pneumophila serogroups 1 to 14. | Buse HY, Hoelle JM, Muhlen C, Lytle DA. | FEMS Microbiol Lett | 10.1093/femsle/fny067 | 2018 | |
| Highlighting the Potency of Biosurfactants Produced by Pseudomonas Strains as Anti-Legionella Agents. | Loiseau C, Portier E, Corre MH, Schlusselhuber M, Depayras S, Berjeaud JM, Verdon J. | Biomed Res Int | 10.1155/2018/8194368 | 2018 | ||
| Ciliate Paramecium is a natural reservoir of Legionella pneumophila. | Watanabe K, Nakao R, Fujishima M, Tachibana M, Shimizu T, Watarai M. | Sci Rep | 10.1038/srep24322 | 2016 | ||
| Intragenic recombination has a critical role on the evolution of Legionella pneumophila virulence-related effector sidJ. | Costa J, Teixeira PG, d'Avo AF, Junior CS, Verissimo A. | PLoS One | 10.1371/journal.pone.0109840 | 2014 | ||
| Phylogeny | Development of a DNA microarray method for detection and identification of all 15 distinct O-antigen forms of Legionella pneumophila. | Cao B, Yao F, Liu X, Feng L, Wang L. | Appl Environ Microbiol | 10.1128/aem.01957-13 | 2013 | |
| Phylogeny | The N-acylneuraminate cytidyltransferase gene, neuA, is heterogenous in Legionella pneumophila strains but can be used as a marker for epidemiological typing in the consensus sequence-based typing scheme. | Farhat C, Mentasti M, Jacobs E, Fry NK, Luck C. | J Clin Microbiol | 10.1128/jcm.00687-11 | 2011 | |
| Phylogeny | Two-step scheme for rapid identification and differentiation of Legionella pneumophila and non-Legionella pneumophila species. | Zhan XY, Li LQ, Hu CH, Zhu QY. | J Clin Microbiol | 10.1128/jcm.01778-09 | 2010 | |
| Phylogeny | High-throughput typing method to identify a non-outbreak-involved Legionella pneumophila strain colonizing the entire water supply system in the town of Rennes, France. | Sobral D, Le Cann P, Gerard A, Jarraud S, Lebeau B, Loisy-Hamon F, Vergnaud G, Pourcel C. | Appl Environ Microbiol | 10.1128/aem.05556-11 | 2011 | |
| Enzymology | Legionella pneumophila secretes an endoglucanase that belongs to the family-5 of glycosyl hydrolases and is dependent upon type II secretion. | Pearce MM, Cianciotto NP. | FEMS Microbiol Lett | 10.1111/j.1574-6968.2009.01801.x | 2009 | |
| Phylogeny | Identification of legionella species by use of an oligonucleotide array. | Su HP, Tung SK, Tseng LR, Tsai WC, Chung TC, Chang TC. | J Clin Microbiol | 10.1128/jcm.02225-08 | 2009 | |
| Enzymology | Development and evaluation of Chlamylege, a new commercial test allowing simultaneous detection and identification of Legionella, Chlamydophila pneumoniae, and Mycoplasma pneumoniae in clinical respiratory specimens by multiplex PCR. | Ginevra C, Barranger C, Ros A, Mory O, Stephan JL, Freymuth F, Joannes M, Pozzetto B, Grattard F. | J Clin Microbiol | 10.1128/jcm.43.7.3247-3254.2005 | 2005 | |
| Metabolism | The secreted pyomelanin pigment of Legionella pneumophila confers ferric reductase activity. | Chatfield CH, Cianciotto NP. | Infect Immun | 10.1128/iai.00489-07 | 2007 | |
| Enzymology | Quantitative real-time Legionella PCR for environmental water samples: data interpretation. | Joly P, Falconnet PA, Andre J, Weill N, Reyrolle M, Vandenesch F, Maurin M, Etienne J, Jarraud S. | Appl Environ Microbiol | 10.1128/aem.72.4.2801-2808.2006 | 2006 | |
| Molecular evolution of the dotA gene in Legionella pneumophila. | Ko KS, Hong SK, Lee HK, Park MY, Kook YH. | J Bacteriol | 10.1128/jb.185.21.6269-6277.2003 | 2003 | ||
| Enzymology | Rapid method for enumeration of viable Legionella pneumophila and other Legionella spp. in water. | Delgado-Viscogliosi P, Simonart T, Parent V, Marchand G, Dobbelaere M, Pierlot E, Pierzo V, Menard-Szczebara F, Gaudard-Ferveur E, Delabre K, Delattre JM. | Appl Environ Microbiol | 10.1128/aem.71.7.4086-4096.2005 | 2005 | |
| Phylogeny | Population genetic structure of Legionella pneumophila inferred from RNA polymerase gene (rpoB) and DotA gene (dotA) sequences. | Ko KS, Lee HK, Park MY, Park MS, Lee KH, Woo SY, Yun YJ, Kook YH. | J Bacteriol | 10.1128/jb.184.8.2123-2130.2002 | 2002 | |
| Genetics | Packaging of live Legionella pneumophila into pellets expelled by Tetrahymena spp. does not require bacterial replication and depends on a Dot/Icm-mediated survival mechanism. | Berk SG, Faulkner G, Garduno E, Joy MC, Ortiz-Jimenez MA, Garduno RA. | Appl Environ Microbiol | 10.1128/aem.01214-07 | 2008 | |
| Characterization of a tandem repeat polymorphism in Legionella pneumophila and its use for genotyping. | Pourcel C, Vidgop Y, Ramisse F, Vergnaud G, Tram C. | J Clin Microbiol | 10.1128/jcm.41.5.1819-1826.2003 | 2003 | ||
| Metabolism | Targeting species-specific low-affinity 16S rRNA binding sites by using peptide nucleic acids for detection of Legionellae in biofilms. | Wilks SA, Keevil CW. | Appl Environ Microbiol | 10.1128/aem.02918-05 | 2006 | |
| Characterization of a lipoprotein common to Legionella species as a urinary broad-spectrum antigen for diagnosis of Legionnaires' disease. | Kim MJ, Sohn JW, Park DW, Park SC, Chun BC. | J Clin Microbiol | 10.1128/jcm.41.7.2974-2979.2003 | 2003 | ||
| Enzymology | Detection of legionellae in hospital water samples by quantitative real-time LightCycler PCR. | Wellinghausen N, Frost C, Marre R. | Appl Environ Microbiol | 10.1128/aem.67.9.3985-3993.2001 | 2001 | |
| Enzymology | Presence and persistence of Legionella spp. in groundwater. | Costa J, Tiago I, da Costa MS, Verissimo A. | Appl Environ Microbiol | 10.1128/aem.71.2.663-671.2005 | 2005 | |
| Metabolism | Discovery of a nonclassical siderophore, legiobactin, produced by strains of Legionella pneumophila. | Liles MR, Scheel TA, Cianciotto NP. | J Bacteriol | 10.1128/jb.182.3.749-757.2000 | 2000 | |
| Identification of Legionella pneumophila rcp, a pagP-like gene that confers resistance to cationic antimicrobial peptides and promotes intracellular infection. | Robey M, O'Connell W, Cianciotto NP. | Infect Immun | 10.1128/iai.69.7.4276-4286.2001 | 2001 | ||
| Production of respirable vesicles containing live Legionella pneumophila cells by two Acanthamoeba spp. | Berk SG, Ting RS, Turner GW, Ashburn RJ. | Appl Environ Microbiol | 10.1128/aem.64.1.279-286.1998 | 1998 | ||
| Enzymology | Development of conventional and real-time PCR assays for detection of Legionella DNA in respiratory specimens. | Rantakokko-Jalava K, Jalava J. | J Clin Microbiol | 10.1128/jcm.39.8.2904-2910.2001 | 2001 | |
| Metabolism | The Legionella pneumophila iraAB locus is required for iron assimilation, intracellular infection, and virulence. | Viswanathan VK, Edelstein PH, Pope CD, Cianciotto NP. | Infect Immun | 10.1128/iai.68.3.1069-1079.2000 | 2000 | |
| Metabolism | Identification and temperature regulation of Legionella pneumophila genes involved in type IV pilus biogenesis and type II protein secretion. | Liles MR, Viswanathan VK, Cianciotto NP. | Infect Immun | 10.1128/iai.66.4.1776-1782.1998 | 1998 | |
| Enzymology | Application of RNA polymerase beta-subunit gene (rpoB) sequences for the molecular differentiation of Legionella species. | Ko KS, Lee HK, Park MY, Lee KH, Yun YJ, Woo SY, Miyamoto H, Kook YH. | J Clin Microbiol | 10.1128/jcm.40.7.2653-2658.2002 | 2002 | |
| Phylogeny | Characterization of members of the Legionellaceae family by automated ribotyping. | Cordevant C, Tang JS, Cleland D, Lange M. | J Clin Microbiol | 10.1128/jcm.41.1.34-43.2003 | 2003 | |
| Phylogeny | Restriction fragment length polymorphism of rRNA genes for molecular typing of members of the family Legionellaceae. | Bangsborg JM, Gerner-Smidt P, Colding H, Fiehn NE, Bruun B, Hoiby N. | J Clin Microbiol | 10.1128/jcm.33.2.402-406.1995 | 1995 | |
| Phase-variable expression of lipopolysaccharide contributes to the virulence of legionella pneumophila. | Luneberg E, Zahringer U, Knirel YA, Steinmann D, Hartmann M, Steinmetz I, Rohde M, Kohl J, Frosch M. | J Exp Med | 10.1084/jem.188.1.49 | 1998 | ||
| Efficacy of NY-198 against experimental Legionnaires disease. | Kohno S, Yamaguchi K, Dohtsu Y, Koga H, Hayashi T, Hirota M, Saito A, Hara K. | Antimicrob Agents Chemother | 10.1128/aac.32.9.1427 | 1988 | ||
| Identification of mip-like genes in the genus Legionella. | Cianciotto NP, Bangsborg JM, Eisenstein BI, Engleberg NC. | Infect Immun | 10.1128/iai.58.9.2912-2918.1990 | 1990 | ||
| Pathogenicity | Susceptibility of Legionella pneumophila to ofloxacin in vitro and in experimental Legionella pneumonia in guinea pigs. | Saito A, Sawatari K, Fukuda Y, Nagasawa M, Koga H, Tomonaga A, Nakazato H, Fujita K, Shigeno Y, Suzuyama Y. | Antimicrob Agents Chemother | 10.1128/aac.28.1.15 | 1985 | |
| Phylogeny | Hydroxy-fatty acid profiles of Legionella species: diagnostic usefulness assessed by principal component analysis. | Jantzen E, Sonesson A, Tangen T, Eng J. | J Clin Microbiol | 10.1128/jcm.31.6.1413-1419.1993 | 1993 | |
| Monoclonal antibodies to Legionella Mip proteins recognize genus- and species-specific epitopes. | Helbig JH, Ludwig B, Luck PC, Groh A, Witzleb W, Hacker J. | Clin Diagn Lab Immunol | 10.1128/cdli.2.2.160-165.1995 | 1995 | ||
| Genus-specific epitope on the 60-kilodalton Legionella heat shock protein recognized by a monoclonal antibody. | Steinmetz I, Rheinheimer C, Hubner I, Bitter-Suermann D. | J Clin Microbiol | 10.1128/jcm.29.2.346-354.1991 | 1991 | ||
| Cross-reactions between Legionella pneumophila (serogroup 1) and twenty-eight other bacterial species, including other members of the family Legionellaceae. | Collins MT, Espersen F, Hoiby N, Cho SN, Friis-Moller A, Reif JS. | Infect Immun | 10.1128/iai.39.3.1441-1456.1983 | 1983 | ||
| DNA probe specific for Legionella pneumophila. | Grimont PA, Grimont F, Desplaces N, Tchen P. | J Clin Microbiol | 10.1128/jcm.21.3.431-437.1985 | 1985 | ||
| Antigenic analysis of Legionella pneumophila and Tatlockia micdadei (Legionella micdadei) by two-dimensional (crossed) immunoelectrophoresis. | Joly JR, Kenny GE. | Infect Immun | 10.1128/iai.35.2.721-729.1982 | 1982 | ||
| Substrate utilization by Legionella cells after cryopreservation in phosphate buffer. | Weiss E, Westfall HN. | Appl Environ Microbiol | 10.1128/aem.48.2.380-385.1984 | 1984 | ||
| Phylogeny | Identification and DNA fingerprinting of Legionella strains by randomly amplified polymorphic DNA analysis. | Bansal NS, McDonell F. | J Clin Microbiol | 10.1128/jcm.35.9.2310-2314.1997 | 1997 | |
| Phylogeny | Serological and genotypic diversity among serogroup 5- reacting environmental Legionella isolates. | Garrity GM, Elder EM, Davis B, Vickers RM, Brown A. | J Clin Microbiol | 10.1128/jcm.15.4.646-653.1982 | 1982 | |
| Phylogeny | Clinical laboratory differentiation of Legionellaceae family members with pigment production and fluorescence on media supplemented with aromatic substrates. | Vickers RM, Yu VL. | J Clin Microbiol | 10.1128/jcm.19.5.583-587.1984 | 1984 | |
| Phylogeny | Usefulness of fatty acid composition for differentiation of Legionella species. | Diogo A, Verissimo A, Nobre MF, da Costa MS. | J Clin Microbiol | 10.1128/jcm.37.7.2248-2254.1999 | 1999 | |
| Detection of flagella in 278 Legionella strains by latex reagent sensitized with antiflagellum immunoglobulins. | Bornstein N, Marmet D, Dumaine MH, Surgot M, Fleurette J. | J Clin Microbiol | 10.1128/jcm.29.5.953-956.1991 | 1991 | ||
| Phylogeny | Sequence-based classification scheme for the genus Legionella targeting the mip gene. | Ratcliff RM, Lanser JA, Manning PA, Heuzenroeder MW. | J Clin Microbiol | 10.1128/jcm.36.6.1560-1567.1998 | 1998 | |
| Metabolism | Development of the BIOLOG substrate utilization system for identification of Legionella spp. | Mauchline WS, Keevil CW. | Appl Environ Microbiol | 10.1128/aem.57.11.3345-3349.1991 | 1991 | |
| Compilation of small ribosomal subunit RNA structures. | Neefs JM, Van de Peer Y, De Rijk P, Chapelle S, De Wachter R. | Nucleic Acids Res | 10.1093/nar/21.13.3025 | 1993 | ||
| Phylogeny | Legionella pneumophila serogroup Lansing 3 isolated from a patient with fatal pneumonia, and descriptions of L. pneumophila subsp. pneumophila subsp. nov., L. pneumophila subsp. fraseri subsp. nov., and L. pneumophila subsp. pascullei subsp. nov. | Brenner DJ, Steigerwalt AG, Epple P, Bibb WF, McKinney RM, Starnes RW, Colville JM, Selander RK, Edelstein PH, Moss CW. | J Clin Microbiol | 10.1128/jcm.26.9.1695-1703.1988 | 1988 |
| #17912 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25121 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #38478 | ; Curators of the CIP; |
| #45944 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 13399 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68382 | Automatically annotated from API zym . |
| #121901 | Collection of Institut Pasteur ; Curators of the CIP; CIP 103859 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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