Secundilactobacillus similis (DSM 23365, JCM 2765, LMG 23904)

Name: Secundilactobacillus similis (DSM 23365, JCM 2765, LMG 23904)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6694

Type strain

Strain Designation M36

Culture col. no. DSM 23365 JCM 2765 LMG 23904 M36 CIP 110209 1 more

NCBI tax ID(s) 414682

Special Collections DSMZ JCM CIP Literature strains

History DSMZ <- JCM/RIKEN <- M. Seki <- S. Tanasupawat JCM <-- M. Seki M36 <-- S. Tanasupawat. CIP <- 2010, JCM <- 1984, M. Seki: strain M36 <- S. Tanasupawat

Links

Secundilactobacillus similis M36 is an anaerobe, Gram-positive, rod-shaped bacterium that was isolated from fermented cane molasses at alcohol plants.

Gram-positive rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 63892

JCM 2765,LMG 23904,KCTC 15120,CECT 8645,CIP 110209,DSM 23365

@ref 20215

Last LPSN update 2026-05-29 08:26:28

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Secundilactobacillus

Species Secundilactobacillus similis

Full scientific name Secundilactobacillus similis (Kitahara et al. 2010) Zheng et al. 2020

Synonyms (1)

Lactobacillus similis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29360	positive	3.5 µm	0.5 µm	rod-shaped
122618	positive			rod-shaped
125439					93.904
125438	positive				92.733

Pigmentation

29360

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
16808	MRS MEDIUM (DSMZ Medium 11)	Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
40415	MEDIUM 40- for Lactobacillus and Leuconostoc		Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
122618	CIP Medium 40	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
16808	positive	growth	35
29360	positive	growth	15-37
29360	positive	optimum	37
40415	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
16808	anaerobe
16808	microaerophile
29360	facultative anaerobe
122618	obligate aerobe
125439	facultative anaerobe	94.363

Spore formation

@ref	Spore formation	Confidence
29360
122618
125439		94.884

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
29360	22599 ChEBI	arabinose	+	carbon source
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
29360	28260 ChEBI	galactose	+	carbon source
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
29360	24265 ChEBI	gluconate	+	carbon source
29360	17234 ChEBI	glucose	+	carbon source
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
29360	17716 ChEBI	lactose	+	carbon source
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
29360	17306 ChEBI	maltose	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
29360	28053 ChEBI	melibiose	+	carbon source
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
29360	506227 ChEBI	N-acetylglucosamine	+	carbon source
122618	17632 ChEBI	nitrate	-	reduction
122618	16301 ChEBI	nitrite	-	reduction
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
29360	33942 ChEBI	ribose	+	carbon source
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid
29360	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
122618	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
29360	alpha-galactosidase	+	3.2.1.22
122618	catalase	-	1.11.1.6
122618	oxidase	+
122618	urease	-	3.5.1.5

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	ppGpp biosynthesis	100	4 of 4
66794	quinate degradation	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	acetoin degradation	100	3 of 3
66794	palmitate biosynthesis	100	22 of 22
66794	pentose phosphate pathway	100	11 of 11
66794	ribulose monophosphate pathway	100	2 of 2
66794	formaldehyde oxidation	100	3 of 3
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	teichoic acid biosynthesis	100	1 of 1
66794	coenzyme A metabolism	100	4 of 4
66794	L-lactaldehyde degradation	100	3 of 3
66794	acetate fermentation	100	4 of 4
66794	threonine metabolism	90	9 of 10
66794	valine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	vitamin B1 metabolism	84.62	11 of 13
66794	peptidoglycan biosynthesis	80	12 of 15
66794	methylglyoxal degradation	80	4 of 5
66794	purine metabolism	77.66	73 of 94
66794	vitamin B12 metabolism	76.47	26 of 34
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	flavin biosynthesis	73.33	11 of 15
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	heme metabolism	71.43	10 of 14
66794	photosynthesis	71.43	10 of 14
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	urea cycle	69.23	9 of 13
66794	phenylalanine metabolism	69.23	9 of 13
66794	pyrimidine metabolism	68.89	31 of 45
66794	glutamate and glutamine metabolism	67.86	19 of 28
66794	serine metabolism	66.67	6 of 9
66794	arginine metabolism	66.67	16 of 24
66794	enterobactin biosynthesis	66.67	2 of 3
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	NAD metabolism	66.67	12 of 18
66794	cyanate degradation	66.67	2 of 3
66794	glycolysis	64.71	11 of 17
66794	tetrahydrofolate metabolism	64.29	9 of 14
66794	d-xylose degradation	63.64	7 of 11
66794	proline metabolism	63.64	7 of 11
66794	ketogluconate metabolism	62.5	5 of 8
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	isoleucine metabolism	62.5	5 of 8
66794	leucine metabolism	61.54	8 of 13
66794	Entner Doudoroff pathway	60	6 of 10
66794	lipoate biosynthesis	60	3 of 5
66794	glycogen metabolism	60	3 of 5
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	propanol degradation	57.14	4 of 7
66794	degradation of sugar alcohols	56.25	9 of 16
66794	cysteine metabolism	55.56	10 of 18
66794	non-pathway related	55.26	21 of 38
66794	alanine metabolism	55.17	16 of 29
66794	histidine metabolism	55.17	16 of 29
66794	oxidative phosphorylation	54.95	50 of 91
66794	methionine metabolism	53.85	14 of 26
66794	ethanol fermentation	50	1 of 2
66794	sulfopterin metabolism	50	2 of 4
66794	adipate degradation	50	1 of 2
66794	citric acid cycle	50	7 of 14
66794	CMP-KDO biosynthesis	50	2 of 4
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	tryptophan metabolism	50	19 of 38
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	degradation of pentoses	50	14 of 28
66794	butanoate fermentation	50	2 of 4
66794	cyclohexanol degradation	50	2 of 4
66794	lactate fermentation	50	2 of 4
66794	suberin monomers biosynthesis	50	1 of 2
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	glutathione metabolism	50	7 of 14
66794	isoprenoid biosynthesis	50	13 of 26
66794	gluconeogenesis	50	4 of 8
66794	lysine metabolism	47.62	20 of 42
66794	vitamin B6 metabolism	45.45	5 of 11
66794	d-mannose degradation	44.44	4 of 9
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	mevalonate metabolism	42.86	3 of 7
66794	tyrosine metabolism	42.86	6 of 14
66794	lipid metabolism	41.94	13 of 31
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	propionate fermentation	40	4 of 10
66794	glycine metabolism	40	4 of 10
66794	gallate degradation	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	degradation of hexoses	38.89	7 of 18
66794	dTDPLrhamnose biosynthesis	37.5	3 of 8
66794	carnitine metabolism	37.5	3 of 8
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	IAA biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	nitrate assimilation	33.33	3 of 9
66794	octane oxidation	33.33	1 of 3
66794	allantoin degradation	33.33	3 of 9
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	sulfate reduction	30.77	4 of 13
66794	coenzyme M biosynthesis	30	3 of 10
66794	myo-inositol biosynthesis	30	3 of 10
66794	starch degradation	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	degradation of sugar acids	28	7 of 25
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	ascorbate metabolism	27.27	6 of 22
66794	biotin biosynthesis	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	glycogen biosynthesis	25	1 of 4
66794	4-hydroxymandelate degradation	22.22	2 of 9

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
16808	-	-	-	-	-	+	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
122618	not determinedn.d.	-	-	-	+/-	+/-	+/-	-	-	-	+/-	+/-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	+/-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Sugary food
#Engineered	#Industrial	#Plant (Factory)

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
16808	fermented cane molasses at alcohol plants	Thailand	THA	Asia
67770	Fermented molasses
122618	Fermented cane molasses	Thailand	THA	Asia

Taxonmaps

69479

Global distribution of 16S sequence LC071812 (>99% sequence identity) for Secundilactobacillus from Microbeatlas

Aquatic Samples	475
Soil Samples	256
Animal Samples	5495
Plant Samples	232
Total Samples	6458

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16808	1	Risk group (German classification) According to TRBA 466
122618	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3953858v1 assembly for Secundilactobacillus similis DSM 23365 = JCM 2765	scaffold	GCA_039538585			1423804	63.38
67770	ASM143659v1 assembly for Secundilactobacillus similis DSM 23365 = JCM 2765	scaffold	GCA_001436595	1423804.4	2700989125	1423804	27.12
67770	ASM131107v1 assembly for Secundilactobacillus similis DSM 23365 = JCM 2765	contig	GCA_001311075	1423804.3	2728369669	1423804	22.66

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Lactobacillus similis gene for 16S rRNA, partial sequence, strain: JCM 2765	AB289056	682	1423804
16808	Lactobacillus similis gene for 16S rRNA, partial sequence	AB282889	1528	1423804
67770	Lactobacillus similis gene for 16S ribosomal RNA, partial sequence, strain: JCM 2765	LC071812	1462	1423804

GC content

@ref	GC-content (mol%)	Method
16808	48.5	high performance liquid chromatography (HPLC)
29360	48.5
67770	47	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3953858v1 assembly for Secundilactobacillus similis DSM 23365 = JCM 2765
NCBI: GCA_039538585

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	94.36	no
125439	gram_stain	BacteriaNetⓘ	positive	88.90	no
125439	motility	BacteriaNetⓘ	no	93.90	no
125439	spore_formation	BacteriaNetⓘ	no	94.88	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus similis DSM 23365 = JCM 2765
PATRIC: 1423804.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.73	yes
125438	anaerobic	anaerobicⓘ	no	82.97	no
125438	spore-forming	spore-formingⓘ	no	77.76	yes
125438	aerobic	aerobicⓘ	no	90.87	no
125438	thermophilic	thermophileⓘ	no	94.99	yes
125438	flagellated	motile2+ⓘ	no	89.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Volatile profile and sensory properties of gluten-free bread with yellow pea flour and sourdough	Drakula S, Novotni D, Cukelj Mustac N, Voucko B, Krpan M, Vahcic N, Hruskar M, Curic D.	Eur Food Res Technol	10.1007/s00217-023-04439-y	2024
	Probiotic containing Lactobacillus reuteri DSM 17648 as an adjunct treatment for Helicobacter pylori infection: A randomized, double-blind, placebo-controlled trial.	Ismail NI, Nawawi KNM, Hsin DCC, Hao KW, Mahmood NRKN, Chearn GLC, Wong Z, Tamil AM, Joseph H, Raja Ali RA.	Helicobacter	10.1111/hel.13017	2023
	Complete genome sequencing of four marine bacteria, Gilvimarinus japonicus NBRC 111987^T, Halioxenophilus aromaticivorans JCM 19134^T, Maricurvus nonylphenolicus JCM 17778^T, and Simiduia litorea JCM 19759^T belonging to the family Cellvibrionaceae.	Miura T, Miyakawa T, Kusuya Y, Kamino K.	Microbiol Resour Announc	10.1128/mra.00873-24	2024
	Immunosuppressive Effects of Two Probiotics, Lactobacillus paracasei DSM 13434 and Lactobacillus plantarum DSM 15312, on CD4+ T Cells of Multiple Sclerosis Patients.	Chakamian K, Robat-Jazi B, Naser Moghadasi A, Mansouri F, Nodehi M, Motevaseli E, Izad M, Yekaninejad S, Shirzad M, Bidad K, Oraei M, Ansaripour B, Saboor-Yaraghi AA.	Iran J Allergy Asthma Immunol	10.18502/ijaai.v22i1.12004	2023
	The Effects of High-Dose Probiotic Supplementation on Immune Activation and Neurocognitive Disorders in People Living with HIV Undergoing Successful Antiretroviral Treatment: The Procog Study.	Vassallo M, Zerlini M, Fabre R, Joly H, Durant J, Makinson A, Mauries A, Capeau J, Fellahi S, Bastard JP, Pradier C, Lebrun-Frenay C.	Pathogens	10.3390/pathogens14060568	2025
	Enhanced Macrophage and Granulocytic Recruitment with Increased Neo-Angiogenesis in Chicken Embryo Yolk Sac Following In Ovo Probiotic Blend Administration.	Biagini L, Pesaro S, Galosi L, Volpatti D, De Bellis D, Roncarati A, Gavazza A, Rossi G.	Vet Sci	10.3390/vetsci12090892	2025
Pathogenicity	The Impact of Probiotics on Clinical Symptoms and Peripheral Cytokines Levels in Parkinson's Disease: Preliminary In Vivo Data.	Magistrelli L, Contaldi E, Visciglia A, Deusebio G, Pane M, Amoruso A.	Brain Sci	10.3390/brainsci14111147	2024
Pathogenicity	Long-term Probiotics Intervention Facilitates Recovery of Motor and Non-motor Functions by Regulating Inflammation and Modulating Gut-brain Axis in 6-OHDA Rat Model of Parkinson's Disease.	Sharma S, Jain S, Chittora R, Chaudhry R, Nag TC, A E, Radhakrishnan DM, Pandey S, Das S, Bamola VD, Kochhar KP.	Ann Neurosci	10.1177/09727531251335746	2025
	The efficacy of the prenatal administration of Lactobacillus reuteri LR92 DSM 26866 on the prevention of infantile colic: a randomized control trial.	Pourmirzaiee MA, Famouri F, Moazeni W, Hassanzadeh A, Hajihashemi M.	Eur J Pediatr	10.1007/s00431-020-03641-4	2020
	Probiotic treatment using a mix of three Lactobacillus strains for lumbar spine bone loss in postmenopausal women: a randomised, double-blind, placebo-controlled, multicentre trial.	Jansson PA, Curiac D, Lazou Ahren I, Hansson F, Martinsson Niskanen T, Sjogren K, Ohlsson C.	Lancet Rheumatol	10.1016/s2665-9913(19)30068-2	2019
	Lactobacilli and Bifidobacteria: A Parapostbiotic Approach to Study and Explain Their Mutual Bioactive Influence.	Altieri C, Filippone A, Bevilacqua A, Corbo MR, Sinigaglia M.	Foods	10.3390/foods13182966	2024
Metabolism	Enzymatic analysis of levan produced by lactic acid bacteria in fermented doughs.	Shi Q, Hou Y, Xu Y, Morkeberg Krogh KBR, Tenkanen M.	Carbohydr Polym	10.1016/j.carbpol.2018.12.044	2019
	Data-Driven Monitoring of Probiotic Fermentation in Fruit Juices Using Near-Infrared Spectroscopy and Aquaphotomics: An Innovative Approach to Food Valorization.	Regatieri L, Vitalis F, Bujna E, Nguyen QD, Kovacs Z.	Foods	10.3390/foods14071274	2025
	Effect of In Ovo Supplementation of Slab51 Probiotic Mixture, Associated with Marek's Disease Vaccine, on Growth Performance, Intestinal Morphology and Eimeria spp. Infection in Broiler Chickens.	Biagini L, Galosi L, Tambella AM, Roncarati A, De Bellis D, Pesaro S, Attili AR, Berardi S, Rossi G.	Animals (Basel)	10.3390/ani14233435	2024
	The Effectiveness of a Lactobacilli-Based Probiotic Food Supplement on Bone Mineral Density and Bone Metabolism in Australian Early Postmenopausal Women: Protocol for a Double-Blind Randomized Placebo-Controlled Trial.	Resciniti SM, Biesiekierski JR, Ghasem-Zadeh A, Moschonis G.	Nutrients	10.3390/nu16081150	2024
Metabolism	Probiotics as Potential Tool to Mitigate Nucleotide Metabolism Alterations Induced by DiNP Dietary Exposure in Danio rerio.	Giommi C, Maradonna F, Ladisa C, Habibi HR, Carnevali O.	Int J Mol Sci	10.3390/ijms252011151	2024
Metabolism	Functional cream cheese supplemented with Bifidobacterium animalis subsp. lactis DSM 10140 and Lactobacillus reuteri DSM 20016 and prebiotics.	Speranza B, Campaniello D, Monacis N, Bevilacqua A, Sinigaglia M, Corbo MR.	Food Microbiol	10.1016/j.fm.2017.11.001	2018
Metabolism	Exopolysaccharides Production during the Fermentation of Soybean and Fava Bean Flours by Leuconostoc mesenteroides DSM 20343.	Xu Y, Coda R, Shi Q, Tuomainen P, Katina K, Tenkanen M.	J Agric Food Chem	10.1021/acs.jafc.6b05495	2017
	Evaluation of efficacy and safety of Lacticaseibacillus rhamnosus LRa05 in the eradication of Helicobacter pylori: a randomized, double-blind, placebo-controlled trial.	Niu Y, Li J, Qian H, Liang C, Shi X, Bu S.	Front Immunol	10.3389/fimmu.2024.1450414	2024
Pathogenicity	Fermented Soymilk with Probiotic Lactobacilli and Bifidobacterium Strains Ameliorates Dextran-Sulfate-Sodium-Induced Colitis in Rats.	Al Zahrani AJ, Shori AB, Al-Judaibi E.	Nutrients	10.3390/nu16203478	2024
	[Nucleotide sequence and structural analysis of cryptic plasmid pBL90 from Brevibacterium lactofermentum].	Novikov AD, Ryabchenko LE, Shustikova TE, Beletsky AV, Mardanov AV, Ravin NV, Yanenko AS.	Genetika	10.1134/s1022795416100070	2016
	Cannabidiol reshapes the gut microbiome to promote endurance exercise in mice.	Chen S, Lee YB, Song MY, Lim C, Cho H, Shim HJ, Kim JS, Park BH, Kim JK, Bae EJ.	Exp Mol Med	10.1038/s12276-025-01404-5	2025
	Probiotics for the Management of Infantile Colic.	Szajewska H, Dryl R.	J Pediatr Gastroenterol Nutr	10.1097/mpg.0000000000001220	2016
	Assessment of the feed additive consisting of Lactiplantibacillus plantarum DSM 23375 for all animal species for the renewal of its authorisation (Agri-King, Inc.).	EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Bampidis V, Azimonti G, Bastos ML, Christensen H, Dusemund B, Durjava M, Kouba M, Lopez-Alonso M, Lopez Puente S, Marcon F, Mayo B, Pechova A, Petkova M, Ramos F, Sanz Y, Villa RE, Woutersen R, Anguita M, Brozzi R, Garcia-Cazorla Y.	EFSA J	10.2903/j.efsa.2023.8054	2023
Pathogenicity	Human breast milk isolated lactic acid bacteria: antimicrobial and immunomodulatory activity on the Galleria mellonella burn wound model.	Guarnieri A, Venditti N, Cutuli MA, Brancazio N, Salvatore G, Magnifico I, Pietrangelo L, Falcone M, Vergalito F, Nicolosi D, Scarsella F, Davinelli S, Scapagnini G, Petronio Petronio G, Di Marco R.	Front Cell Infect Microbiol	10.3389/fcimb.2024.1428525	2024
	Highly efficient CRISPR-Cas9 base editing in Bifidobacterium with bypass of restriction modification systems.	Lin H-C, Hsiao W-C, Hsu Y-C, Lin M-C, Hsu C-C, Zhang MM.	Appl Environ Microbiol	10.1128/aem.01985-24	2025
	Psychobiotics Ameliorate Depression and Anxiety Status in Surgical Oncology Patients: Results from the ProDeCa Study.	Tzikos G, Chamalidou E, Christopoulou D, Apostolopoulou A, Gkarmiri S, Pertsikapa M, Menni AE, Theodorou IM, Stavrou G, Doutsini ND, Shrewsbury AD, Papavramidis T, Tsetis JK, Theodorou H, Konsta A, Kotzampassi K.	Nutrients	10.3390/nu17050857	2025
	Exploiting Bacteria for Improving Hypoxemia of COVID-19 Patients.	Trinchieri V, Marazzato M, Ceccarelli G, Lombardi F, Piccirilli A, Santinelli L, Maddaloni L, Vassalini P, Mastroianni CM, d'Ettorre G.	Biomedicines	10.3390/biomedicines10081851	2022
Metabolism	Cloning, Purification and Characterization of Acetyl Xylane Esterase from Anoxybacillus flavithermus DSM 2641(T) with Activity on Low Molecular-Weight Acetates.	Eminoglu A, Ulker S, Sandalli C.	Protein J	10.1007/s10930-015-9618-x	2015
	Lactiplantibacillus (Lactobacillus) plantarum as a Complementary Treatment to Improve Symptomatology in Neurodegenerative Disease: A Systematic Review of Open Access Literature.	Beltran-Velasco AI, Reiriz M, Uceda S, Echeverry-Alzate V.	Int J Mol Sci	10.3390/ijms25053010	2024
	Rewiring Mood: Precision Psychobiotics as Adjunct or Stand-Alone Therapy in Depression Using Insights from 19 Randomized Controlled Trials in Adults.	Menni AE, Theodorou H, Tzikos G, Theodorou IM, Semertzidou E, Stelmach V, Shrewsbury AD, Stavrou G, Kotzampassi K.	Nutrients	10.3390/nu17122022	2025
	Effects of Multispecies Probiotic Supplementation on Serum Bone Turnover Markers in Postmenopausal Women with Osteopenia: A Randomized, Double-Blind, Placebo-Controlled Trial.	Vanitchanont M, Vallibhakara SA, Sophonsritsuk A, Vallibhakara O.	Nutrients	10.3390/nu16030461	2024
	Production of prebiotic xylooligosaccharides from alkaline extracted wheat straw using the K80R-variant of a thermostable alkali-tolerant xylanase	Faryar R, Linares-Pasten JA, Immerzeel P, Mamo G, Andersson M, Stalbrand H, Mattiasson B, Karlsson EN.	Food and bioproducts processing : transactions of the Institution of Chemical Engineers, Part C.	10.1016/j.fbp.2014.11.004	2015
Metabolism	Strategic Modification of Gut Microbiota through Oral Bacteriotherapy Influences Hypoxia Inducible Factor-1alpha: Therapeutic Implication in Alzheimer's Disease.	Bonfili L, Gong C, Lombardi F, Cifone MG, Eleuteri AM.	Int J Mol Sci	10.3390/ijms23010357	2021
Metabolism	Evaluation of Two Lactic Acid Bacteria Starter Cultures for the Fermentation of Natural Black Table Olives (Olea europaea L cv Kalamon).	Papadelli M, Zoumpopoulou G, Georgalaki M, Anastasiou R, Manolopoulou E, Lytra I, Papadimitriou K, Tsakalidou E.	Pol J Microbiol	10.5604/01.3001.0009.2121	2015
	Technological and Enzymatic Characterization of Autochthonous Lactic Acid Bacteria Isolated from Viili Natural Starters.	Rampanti G, Cantarini A, Cardinali F, Milanovic V, Garofalo C, Aquilanti L, Osimani A.	Foods	10.3390/foods13071115	2024
	Effects of the probiotic Enterococcus faecium NCIMB 10415 on selected lactic acid bacteria and enterobacteria in co-culture.	Starke IC, Zentek J, Vahjen W.	Benef Microbes	10.3920/bm2014.0052	2015
	Gut microbiota as a novel target for treating anxiety and depression: from mechanisms to multimodal interventions.	Ruohan Z, Ruting W, Hongxi W, Zhenjin H, Jiale L, Rongxin Z, Feng J, Yuanbo S.	Front Microbiol	10.3389/fmicb.2025.1664800	2025
	Assessment of the feed additive consisting of Lactococcus lactis DSM 11037 for all animal species for the renewal of its authorisation (Chr. Hansen A/S).	EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Bampidis V, Azimonti G, Bastos ML, Christensen H, Dusemund B, Fasmon Durjava M, Kouba M, Lopez-Alonso M, Lopez Puente S, Marcon F, Mayo B, Pechova A, Petkova M, Ramos F, Sanz Y, Villa RE, Woutersen R, Saarela M, Brozzi R, Galobart J, Gregoretti L, Revez J.	EFSA J	10.2903/j.efsa.2022.7241	2022
	Assessment of the feed additive consisting of Levilactobacillus brevis (formerly Lactobacillus brevis) DSM 12835 EU for all animal species for the renewal of its authorisation (Lactosan GmbH & Co KG).	EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Bampidis V, Azimonti G, Bastos ML, Christensen H, Dusemund B, Fasmon Durjava M, Kouba M, Lopez-Alonso M, Lopez Puente S, Marcon F, Mayo B, Pechova A, Petkova M, Ramos F, Sanz Y, Villa RE, Woutersen R, Saarela M, Galobart J, Gregoretti L, Revez J, Vettori MV, Brozzi R.	EFSA J	10.2903/j.efsa.2021.6900	2021
Genetics	Genomic analysis of Enterococcus faecium strain RAOG174 associated with acute chorioamnionitis carried antibiotic resistance gene: is it time for precise microbiological identification for appropriate antibiotic use?	Pongchaikul P, Romero R, Mongkolsuk P, Vivithanaporn P, Wongsurawat T, Jenjaroenpun P, Nitayanon P, Thaipisuttikul I, Kamlungkuea T, Singsaneh A, Santanirand P, Chaemsaithong P.	BMC Genomics	10.1186/s12864-023-09511-1	2023
	Bifidobacterium infantis and Bifidobacterium breve Improve Symptomatology and Neuronal Damage in Neurodegenerative Disease: A Systematic Review.	Reiriz M, Beltran-Velasco AI, Echeverry-Alzate V, Martinez-Miguel E, Gomez-Senent S, Uceda S, Clemente-Suarez VJ.	Nutrients	10.3390/nu17030391	2025
	Assessment of the feed additive consisting of Lentilactobacillus buchneri (formerly Lactobacillus buchneri) DSM 16774 for all animal species for the renewal of its authorisation (Lactosan GmbH & Co.KG).	EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Bampidis V, Azimonti G, Bastos ML, Christensen H, Dusemund B, Fasmon Durjava M, Kouba M, Lopez-Alonso M, Lopez Puente S, Marcon F, Mayo B, Pechova A, Petkova M, Ramos F, Sanz Y, Villa RE, Woutersen R, Saarela M, Brozzi R, Galobart J, Revez J, Gregoretti L.	EFSA J	10.2903/j.efsa.2021.6696	2021
	Detoxification of Acrylamide by Potentially Probiotic Strains of Lactic Acid Bacteria and Yeast.	Maher A, Miskiewicz K, Rosicka-Kaczmarek J, Nowak A.	Molecules	10.3390/molecules29204922	2024
Genetics	Draft Genome Sequences of Bifidobacterium animalis Consecutively Isolated from Healthy Japanese Individuals.	Tsukimi T, Watabe T, Tanaka K, Sato MP, Suzuki H, Tomita M, Fukuda S.	J Genomics	10.7150/jgen.38516	2020
	Fecal Protein Profile in Eight Dogs Suffering from Acute Uncomplicated Diarrhea before and after Treatment.	Cerquetella M, Mangiaterra S, Rossi G, Gavazza A, Marchegiani A, Sagratini G, Ricciutelli M, Angeloni S, Fioretti L, Marini C, Pucciarelli S, Vincenzetti S.	Vet Sci	10.3390/vetsci10030233	2023
Metabolism	Novel probiotic-fermented milk with angiotensin I-converting enzyme inhibitory peptides produced by Bifidobacterium bifidum MF 20/5.	Gonzalez-Gonzalez C, Gibson T, Jauregi P.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2013.09.002	2013
	Postbiotics: an insightful review of the latest category in functional biotics.	Amobonye A, Pillay B, Hlope F, Asong ST, Pillai S.	World J Microbiol Biotechnol	10.1007/s11274-025-04483-8	2025
	Optimization of a cryoprotective medium for infant formula probiotic applications using response surface methodology	Shamekhi F, Shuhaimi M, Ariff AB, Yazid AM.	Ann Microbiol	10.1007/s13213-011-0328-0	2012
	Adjustment of impact phenolic compounds, antioxidant activity and aroma profile in Cabernet Sauvignon wine by mixed fermentation of Pichia kudriavzevii and Saccharomyces cerevisiae.	Liu W, Ji R, Aimaier A, Sun J, Pu X, Shi X, Cheng W, Wang B.	Food Chem X	10.1016/j.fochx.2023.100685	2023
	Assessment of the feed additive consisting of Pediococcus pentosaceus DSM 12834 for all animal species for the renewal of its authorisation (Lactosan GmbH & Co KG).	EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Bampidis V, Azimonti G, Bastos ML, Christensen H, Dusemund B, Fasmon Durjava M, Kouba M, Lopez-Alonso M, Lopez Puente S, Marcon F, Mayo B, Pechova A, Petkova M, Ramos F, Sanz Y, Villa RE, Woutersen R, Saarela M, Brozzi R, Galobart J, Revez J, Gregoretti L.	EFSA J	10.2903/j.efsa.2021.6713	2021
	Assessment of the feed additive consisting of Lactiplantibacillus plantarum (formerly Lactobacillus plantarum) DSM 12836 for all animal species for the renewal of its authorisation (Lactosan GmbH & Co KG).	EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Bampidis V, Azimonti G, Bastos ML, Christensen H, Dusemund B, Fasmon Durjava M, Kouba M, Lopez-Alonso M, Lopez Puente S, Marcon F, Mayo B, Pechova A, Petkova M, Ramos F, Sanz Y, Villa RE, Woutersen R, Cocconcelli PS, Glandorf B, Herman L, Maradona MP, Saarela M, Galobart J, Gregoretti L, Innocenti M, Lopez-Galvez G, Revez J, Vettori MV, Brozzi R.	EFSA J	10.2903/j.efsa.2021.6626	2021
Pathogenicity	Functional and chemical properties of Phoenix dactylifera l. Polysaccharides and the effect of date flesh and seed intervention on some blood biomarkers: A contrastive analysis.	Noorbakhsh H, Rabbani Khorasgani M.	Food Chem X	10.1016/j.fochx.2023.100834	2023
	Identification of FtfL as a novel target of berberine in intestinal bacteria.	Yan J, Fang C, Yang G, Li J, Liu Y, Zhang L, Yang P, Fang J, Gu Y, Zhang Y, Jiang W.	BMC Biol	10.1186/s12915-023-01778-w	2023
	Human microbiome in post-acute COVID-19 syndrome (PACS).	Fallah A, Sedighian H, Kachuei R, Fooladi AAI.	Curr Res Microb Sci	10.1016/j.crmicr.2024.100324	2025
Pathogenicity	Probiotics Supplementation Attenuates Inflammation and Oxidative Stress Induced by Chronic Sleep Restriction.	Zheng Y, Zhang L, Bonfili L, de Vivo L, Eleuteri AM, Bellesi M.	Nutrients	10.3390/nu15061518	2023
Enzymology	Smoked sausages of bovine meat produced in North Macedonia as a source of pro-technological lactic acid bacteria and coagulase-negative cocci.	Rampanti G, Nikolovska Nedelkoska D, Kalevska T, Stojanovska T, Harasym J, Cardinali F, Orkusz A, Milanovic V, Garofalo C, Bonifazi A, Aquilanti L, Osimani A.	Heliyon	10.1016/j.heliyon.2024.e37548	2024
	Oxygen Sparing Effect of Bacteriotherapy in COVID-19.	Ceccarelli G, Marazzato M, Celani L, Lombardi F, Piccirilli A, Mancone M, Trinchieri V, Pugliese F, Mastroianni CM, d'Ettorre G.	Nutrients	10.3390/nu13082898	2021
	Alteration of the Gut-Lung Axis After Severe COVID-19 Infection and Modulation Through Probiotics: A Randomized, Controlled Pilot Study.	Horvath A, Habisch H, Prietl B, Pfeifer V, Balazs I, Kovacs G, Foris V, John N, Kleinschek D, Feldbacher N, Gronbaek H, Moller HJ, Zukauskaite K, Madl T, Stadlbauer V.	Nutrients	10.3390/nu16223840	2024
	Marinated Sea Bream Fillets Enriched with Lactiplantibacillus plantarum and Bifidobacterium animalis subsp. lactis: Brine Optimization and Product Design.	Speranza B, Bevilacqua A, Racioppo A, Campaniello D, Sinigaglia M, Corbo MR.	Foods	10.3390/foods10030661	2021
	Therapeutic effects of probiotics and herbal medications on oxalate nephrolithiasis: a mini systematic review.	Taheri H, Feizabadi MM, Keikha R, Afkari R.	Iran J Microbiol	10.18502/ijm.v16i1.14866	2024
	Short communication: the complete genome sequence of Bifidobacterium animalis subspecies animalis ATCC 25527(T) and comparative analysis of growth in milk with B. animalis subspecies lactis DSM 10140(T).	Loquasto JR, Barrangou R, Dudley EG, Roberts RF.	J Dairy Sci	10.3168/jds.2011-4499	2011
	Bacterial Lysate from the Multi-Strain Probiotic SLAB51 Triggers Adaptative Responses to Hypoxia in Human Caco-2 Intestinal Epithelial Cells under Normoxic Conditions and Attenuates LPS-Induced Inflammatory Response.	Lombardi F, Augello FR, Palumbo P, Bonfili L, Artone S, Altamura S, Sheldon JM, Latella G, Cifone MG, Eleuteri AM, Cinque B.	Int J Mol Sci	10.3390/ijms24098134	2023
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	Wide-genome selection of lactic acid bacteria harboring genes that promote the elimination of antinutritional factors.	Pham HH, Kim DH, Nguyen TL.	Front Plant Sci	10.3389/fpls.2023.1145041	2023
	Erythritol-enriched powder and oral biofilm regrowth on dental implants: an in vitro study.	Amate-Fernandez P, Figueiredo R, Blanc V, Alvarez G, Leon R, Valmaseda-Castellon E.	Med Oral Patol Oral Cir Bucal	10.4317/medoral.24622	2021
	Mode of killing determines the necrotrophic response of oral bacteria.	Zayed N, Figueiredo J, Van Holm W, Boon N, Bernaerts K, Teughels W.	J Oral Microbiol	10.1080/20002297.2023.2184930	2023
	Postoperative Ileus after Stimulation with Probiotics before Ileostomy Closure.	Rodriguez-Padilla A, Morales-Martin G, Perez-Quintero R, Gomez-Salgado J, Balongo-Garcia R, Ruiz-Frutos C.	Nutrients	10.3390/nu13020626	2021
	Design of a new lyoprotectant increasing freeze-dried Lactobacillus strain survival to long-term storage.	Bodzen A, Jossier A, Dupont S, Mousset PY, Beney L, Lafay S, Gervais P.	BMC Biotechnol	10.1186/s12896-021-00726-2	2021
	A probiotic mix partially protects against castration-induced bone loss in male mice.	Lawenius L, Collden H, Horkeby K, Wu J, Grahnemo L, Vandenput L, Ohlsson C, Sjogren K.	J Endocrinol	10.1530/joe-21-0408	2022
	Factors Associated With Short-Term Eradication of Rectal Colonization by KPC-2 Producing Klebsiella pneumoniae in an Outbreak Setting.	Pellice M, Rodriguez-Nunez O, Rico V, Aguero D, Morata L, Cardozo C, Puerta-Alcalde P, Garcia-Vidal C, Rubio E, Fernandez-Pittol MJ, Vergara A, Pitart C, Marco F, Santana G, Rodriguez-Serna L, Vilella A, Lopez E, Soriano A, Martinez JA, Del Rio A.	Front Microbiol	10.3389/fmicb.2021.630826	2021
	Q-Switch Nd:YAG Laser-Assisted Elimination of Multi-Species Biofilm on Titanium Surfaces.	Namour M, Namour M, Verspecht T, El Mobadder M, Teughels W, Peremans A, Nammour S, Rompen E.	Materials (Basel)	10.3390/ma13071573	2020
	Diversion Colitis and Probiotic Stimulation: Effects of Bowel Stimulation Prior to Ileostomy Closure.	Rodriguez-Padilla A, Morales-Martin G, Perez-Quintero R, Rada-Morgades R, Gomez-Salgado J, Ruiz-Frutos C.	Front Med (Lausanne)	10.3389/fmed.2021.654573	2021
	Ultrasound-Attenuated Microorganisms Inoculated in Vegetable Beverages: Effect of Strains, Temperature, Ultrasound and Storage Conditions on the Performances of the Treatment.	Campaniello D, Corbo MR, Speranza B, Sinigaglia M, Bevilacqua A.	Microorganisms	10.3390/microorganisms8081219	2020
	Emerging Strategies against Non-Typhoidal Salmonella: From Pathogenesis to Treatment.	Sima CM, Buzila ER, Trofin F, Paduraru D, Lunca C, Duhaniuc A, Dorneanu OS, Nastase EV.	Curr Issues Mol Biol	10.3390/cimb46070442	2024
Metabolism	Bifidobacterium response to lactulose ingestion in the gut relies on a solute-binding protein-dependent ABC transporter.	Yoshida K, Hirano R, Sakai Y, Choi M, Sakanaka M, Kurihara S, Iino H, Xiao JZ, Katayama T, Odamaki T.	Commun Biol	10.1038/s42003-021-02072-7	2021
	Isolation of Prebiotics from Artocarpus integer's Seed.	Wong JC, Hii SL, Koh CC.	Int J Food Sci	10.1155/2021/9940078	2021
	Alginate- and Gelatin-Coated Apple Pieces as Carriers for Bifidobacterium animalis subsp. lactis DSM 10140.	Campaniello D, Bevilacqua A, Speranza B, Sinigaglia M, Corbo MR.	Front Microbiol	10.3389/fmicb.2020.566596	2020
Metabolism	Type I/II Interferon in HIV-1-Infected Patients: Expression in Gut Mucosa and in Peripheral Blood Mononuclear Cells and Its Modification upon Probiotic Supplementation.	Pinacchio C, Scheri GC, Statzu M, Santinelli L, Ceccarelli G, Innocenti GP, Vullo V, Antonelli G, Brenchley JM, d'Ettorre G, Scagnolari C.	J Immunol Res	10.1155/2018/1738676	2018
	Safety and efficacy of Alterion NE^® (Bacillus subtilis DSM 29784) as a feed additive for minor poultry species for fattening and reared for laying.	EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Rychen G, Aquilina G, Azimonti G, Bampidis V, Bastos ML, Bories G, Chesson A, Cocconcelli PS, Flachowsky G, Gropp J, Kolar B, Kouba M, Lopez-Alonso M, Lopez Puente S, Mantovani A, Mayo B, Ramos F, Villa RE, Wallace RJ, Wester P, Brozzi R, Saarela M.	EFSA J	10.2903/j.efsa.2018.5204	2018
	Effect of microbial inoculation and storage length on the fermentation profile and nutritive value of high-moisture corn ensiled at 2 different dry matter concentrations.	Saylor BA, Heinzen C, Diepersloot EC, Ferraretto LF.	J Anim Sci	10.1093/jas/skac254	2022
	Oral Bacteriotherapy in Patients With COVID-19: A Retrospective Cohort Study.	Ceccarelli G, Borrazzo C, Pinacchio C, Santinelli L, Innocenti GP, Cavallari EN, Celani L, Marazzato M, Alessandri F, Ruberto F, Pugliese F, Venditti M, Mastroianni CM, d'Ettorre G.	Front Nutr	10.3389/fnut.2020.613928	2020
	Antibacterial Effectiveness of Fecal Water and in Vitro Activity of a Multi-Strain Probiotic Formulation against Multi-Drug Resistant Microorganisms.	Oliva A, Miele MC, De Angelis M, Costantini S, Mascellino MT, Mastroianni CM, Vullo V, d'Ettorre G.	Microorganisms	10.3390/microorganisms8030332	2020
Genetics	Genomic and epigenetic landscapes drive CRISPR-based genome editing in Bifidobacterium.	Pan M, Morovic W, Hidalgo-Cantabrana C, Roberts A, Walden KKO, Goh YJ, Barrangou R.	Proc Natl Acad Sci U S A	10.1073/pnas.2205068119	2022
	Safety and efficacy of Lactobacillus parafarraginis DSM 32962 as a silage additive for all animal species.	EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Bampidis V, Azimonti G, Bastos ML, Christensen H, Dusemund B, Kos Durjava M, Kouba M, Lopez-Alonso M, Lopez Puente S, Marcon F, Mayo B, Pechova A, Petkova M, Ramos F, Sanz Y, Villa RE, Woutersen R, Cocconcelli PS, Glandorf B, Prieto Maradona M, Saarela M, Galobart J, Gregoretti L, Innocenti M, Lopez-Galvez G, Pettenati E, Sofianidis K, Vettori MV, Brozzi R.	EFSA J	10.2903/j.efsa.2020.6201	2020
	Diversion Colitis: Macro and Microscopic Findings after Probiotics Stimulation.	Rodriguez-Padilla A, Morales-Martin G, Perez-Quintero R, Gomez-Salgado J, Rada-Morgades R, Ruiz-Frutos C.	Biology (Basel)	10.3390/biology10040303	2021
	Elaboration of Nanostructured Levan-Based Colloid System as a Biological Alternative with Antimicrobial Activity for Applications in the Management of Pathogenic Microorganisms.	Radenkovs V, Valdovska A, Galina D, Cairns S, Jakovlevs D, Gaidukovs S, Cinkmanis I, Juhnevica-Radenkova K.	Nanomaterials (Basel)	10.3390/nano13222969	2023
	A randomized double-blind placebo controlled pilot study of probiotics in adolescents with severe obesity.	Verma A, Nelson MT, DePaolo WR, Hampe C, Roth CL.	J Diabetes Metab Disord	10.1007/s40200-021-00855-7	2021
	Impact of inulin and yeast containing synbiotic on calves' productivity and greenhouse gas production.	Jonova S, Ilgaza A, Zolovs M, Balins A.	Vet World	10.14202/vetworld.2020.1017-1024	2020
	Can Probiotics, Particularly Limosilactobacillus fermentum UCO-979C and Lacticaseibacillus rhamnosus UCO-25A, Be Preventive Alternatives against SARS-CoV-2?	Valdebenito-Navarrete H, Fuentes-Barrera V, Smith CT, Salas-Burgos A, Zuniga FA, Gomez LA, Garcia-Cancino A.	Biology (Basel)	10.3390/biology12030384	2023
	Adhesive Interactions Between Lactic Acid Bacteria and beta-Lactoglobulin: Specificity and Impact on Bacterial Location in Whey Protein Isolate.	Gomand F, Borges F, Guerin J, El-Kirat-Chatel S, Francius G, Dumas D, Burgain J, Gaiani C.	Front Microbiol	10.3389/fmicb.2019.01512	2019
Pathogenicity	Antibiotic susceptibility patterns and resistance genes of starter cultures and probiotic bacteria used in food.	Kastner S, Perreten V, Bleuler H, Hugenschmidt G, Lacroix C, Meile L.	Syst Appl Microbiol	10.1016/j.syapm.2005.07.009	2006
Biotechnology	Use of traditional African fermented beverages as delivery vehicles for Bifidobacterium lactis DSM 10140.	McMaster LD, Kokott SA, Reid SJ, Abratt VR.	Int J Food Microbiol	10.1016/j.ijfoodmicro.2004.12.013	2005
	A Viability Quantitative PCR Dilemma: Are Longer Amplicons Better?	Van Holm W, Ghesquiere J, Boon N, Verspecht T, Bernaerts K, Zayed N, Chatzigiannidou I, Teughels W.	Appl Environ Microbiol	10.1128/aem.02653-20	2021
	Combined acid hydrolysis and fermentation improves bioactivity of citrus flavonoids in vitro and in vivo.	Konig A, Sadova N, Dornmayr M, Schwarzinger B, Neuhauser C, Stadlbauer V, Wallner M, Woischitzschlager J, Muller A, Tona R, Kofel D, Weghuber J.	Commun Biol	10.1038/s42003-023-05424-7	2023
	Gut Microbiome Disruption Following SARS-CoV-2: A Review.	Righi E, Dalla Vecchia I, Auerbach N, Morra M, Gorska A, Sciammarella C, Lambertenghi L, Gentilotti E, Mirandola M, Tacconelli E, Sartor A.	Microorganisms	10.3390/microorganisms12010131	2024
	Identification of the gene for beta-fructofuranosidase of Bifidobacterium lactis DSM10140(T) and characterization of the enzyme expressed in Escherichia coli.	Ehrmann MA, Korakli M, Vogel RF.	Curr Microbiol	10.1007/s00284-002-3908-1	2003
	Modulation of the effect of dextran sulfate sodium-induced acute colitis by the administration of different probiotic strains of Lactobacillus and Bifidobacterium.	Osman N, Adawi D, Ahrne S, Jeppsson B, Molin G.	Dig Dis Sci	10.1023/b:ddas.0000017459.59088.43	2004
	Probiotics protect mice from CoCrMo particles-induced osteolysis.	Wang Z, Xue K, Bai M, Deng Z, Gan J, Zhou G, Qian H, Bao N, Zhao J.	Int J Nanomedicine	10.2147/ijn.s130485	2017
	Evaluation of Dietary Supplements Containing Viable Bacteria by Cultivation/MALDI-TOF Mass Spectrometry and PCR Identification.	Mohar Lorbeg P, Golob M, Kramer M, Treven P, Bogovic Matijasic B.	Front Microbiol	10.3389/fmicb.2021.700138	2021
	Texture promoting capacity and EPS formation by lactic acid bacteria in three different oat-based non-dairy media	Martensson O, Oste R, Holst O.	Eur Food Res Technol		2002
	In Vitro Effects of Streptococcus oralis Biofilm on Peri-Implant Soft Tissue Cells.	Ingendoh-Tsakmakidis A, Eberhard J, Falk CS, Stiesch M, Winkel A.	Cells	10.3390/cells9051226	2020
	The Utilisation of Acrylamide by Selected Microorganisms Used for Fermentation of Food.	Petka K, Wajda L, Duda-Chodak A.	Toxics	10.3390/toxics9110295	2021
	Probiotics and Isoflavones as a Promising Therapeutic for Calcium Status and Bone Health: A Narrative Review.	Harahap IA, Suliburska J.	Foods	10.3390/foods10112685	2021
	Effect of probiotic Lactobacillus strains on acute diarrhea in a cohort of nonhospitalized children attending day-care centers.	Rosenfeldt V, Michaelsen KF, Jakobsen M, Larsen CN, Moller PL, Tvede M, Weyrehter H, Valerius NH, Paerregaard A.	Pediatr Infect Dis J	10.1097/00006454-200205000-00013	2002
	The effect of Lactobacillus reuteri supplementation in Helicobacter pylori infection: a placebo-controlled, single-blind study.	Buckley M, Lacey S, Doolan A, Goodbody E, Seamans K.	BMC Nutr	10.1186/s40795-018-0257-4	2018
	Probiotics Differently Affect Gut-Associated Lymphoid Tissue Indolamine-2,3-Dioxygenase mRNA and Cerebrospinal Fluid Neopterin Levels in Antiretroviral-Treated HIV-1 Infected Patients: A Pilot Study.	Scagnolari C, Corano Scheri G, Selvaggi C, Schietroma I, Najafi Fard S, Mastrangelo A, Giustini N, Serafino S, Pinacchio C, Pavone P, Fanello G, Ceccarelli G, Vullo V, d'Ettorre G.	Int J Mol Sci	10.3390/ijms17101639	2016
Genetics	Comparative Genomics Analyses Reveal the Differences between B. longum subsp. infantis and B. longum subsp. longum in Carbohydrate Utilisation, CRISPR-Cas Systems and Bacteriocin Operons.	Li M, Zhou X, Stanton C, Ross RP, Zhao J, Zhang H, Yang B, Chen W.	Microorganisms	10.3390/microorganisms9081713	2021
	Effect of probiotic Lactobacillus strains in young children hospitalized with acute diarrhea.	Rosenfeldt V, Michaelsen KF, Jakobsen M, Larsen CN, Moller PL, Pedersen P, Tvede M, Weyrehter H, Valerius NH, Paerregaard A.	Pediatr Infect Dis J	10.1097/00006454-200205000-00012	2002
Pathogenicity	A comparative study on the use of flow cytometry and colony forming units for assessment of the antibacterial effect of bacteriocins.	Budde BB, Rasch M.	Int J Food Microbiol	10.1016/s0168-1605(00)00399-8	2001
	High potency multistrain probiotic improves liver histology in non-alcoholic fatty liver disease (NAFLD): a randomised, double-blind, proof of concept study.	Duseja A, Acharya SK, Mehta M, Chhabra S, Shalimar, Rana S, Das A, Dattagupta S, Dhiman RK, Chawla YK.	BMJ Open Gastroenterol	10.1136/bmjgast-2019-000315	2019
	Therapeutic methods of gut microbiota modification in colorectal cancer management - fecal microbiota transplantation, prebiotics, probiotics, and synbiotics.	Kazmierczak-Siedlecka K, Daca A, Fic M, van de Wetering T, Folwarski M, Makarewicz W.	Gut Microbes	10.1080/19490976.2020.1764309	2020
	Differences in folate production by bifidobacteria of different origins.	Sugahara H, Odamaki T, Hashikura N, Abe F, Xiao JZ.	Biosci Microbiota Food Health	10.12938/bmfh.2015-003	2015
	Exploring the Therapeutic Potentials of Exopolysaccharides Derived From Lactic Acid Bacteria and Bifidobacteria: Antioxidant, Antitumor, and Periodontal Regeneration.	Khalil MA, Sonbol FI, Al-Madboly LA, Aboshady TA, Alqurashi AS, Ali SS.	Front Microbiol	10.3389/fmicb.2022.803688	2022
Genetics	Genome-Wide Assessment of Stress-Associated Genes in Bifidobacteria.	Schopping M, Vesth T, Jensen K, Franzen CJ, Zeidan AA.	Appl Environ Microbiol	10.1128/aem.02251-21	2022
	Identification of Species and Subspecies of Lactic Acid Bacteria Present in Spanish Cheeses Type "Torta" by MALDI-TOF MS and pheS gene Analyses.	Sanchez-Juanes F, Teixeira-Martin V, Gonzalez-Buitrago JM, Velazquez E, Flores-Felix JD.	Microorganisms	10.3390/microorganisms8020301	2020
	A Combined Proteomics, Metabolomics and In Vivo Analysis Approach for the Characterization of Probiotics in Large-Scale Production.	Bianchi L, Laghi L, Correani V, Schifano E, Landi C, Uccelletti D, Mattei B.	Biomolecules	10.3390/biom10010157	2020
Pathogenicity	A pilot study on the effects of probiotic supplementation on neuropsychological performance and microRNA-29a-c levels in antiretroviral-treated HIV-1-infected patients.	Ceccarelli G, Fratino M, Selvaggi C, Giustini N, Serafino S, Schietroma I, Corano Scheri G, Pavone P, Passavanti G, Alunni Fegatelli D, Mezzaroma I, Antonelli G, Vullo V, Scagnolari C, d'Ettorre G.	Brain Behav	10.1002/brb3.756	2017
	Clinical effectiveness of adding probiotics to a low FODMAP diet: Randomized double-blind placebo-controlled study.	Turan B, Bengi G, Cehreli R, Akpinar H, Soyturk M.	World J Clin Cases	10.12998/wjcc.v9.i25.7417	2021
	Comparison of the modulatory effects of three structurally similar potential prebiotic substrates on an in vitro multi-species oral biofilm.	Verspecht T, Van Holm W, Boon N, Bernaerts K, Daep CA, Zayed N, Quirynen M, Teughels W.	Sci Rep	10.1038/s41598-021-94510-z	2021
Genetics	Genome-Guided Mass Spectrometry Expedited the Discovery of Paraplantaricin TC318, a Lantibiotic Produced by Lactobacillus paraplantarum Strain Isolated From Cheese.	Hussein WE, Huang E, Ozturk I, Somogyi A, Yang X, Liu B, Yousef AE.	Front Microbiol	10.3389/fmicb.2020.01381	2020
	Studies on structure-function relationships of acetolactate decarboxylase from Enterobacter cloacae.	Ji F, Feng Y, Li M, Yang Y, Wang T, Wang J, Bao Y, Xue S.	RSC Adv	10.1039/c8ra07379a	2018
Pathogenicity	Supplemental Bacillus subtilis DSM 32315 manipulates intestinal structure and microbial composition in broiler chickens.	Ma Y, Wang W, Zhang H, Wang J, Zhang W, Gao J, Wu S, Qi G.	Sci Rep	10.1038/s41598-018-33762-8	2018
Metabolism	beta-Galactosidase from Lactobacillus helveticus DSM 20075: Biochemical Characterization and Recombinant Expression for Applications in Dairy Industry.	Kittibunchakul S, Pham ML, Tran AM, Nguyen TH.	Int J Mol Sci	10.3390/ijms20040947	2019
	Effect of probiotic treatment on the clinical course, intestinal microbiome, and toxigenic Clostridium perfringens in dogs with acute hemorrhagic diarrhea.	Ziese AL, Suchodolski JS, Hartmann K, Busch K, Anderson A, Sarwar F, Sindern N, Unterer S.	PLoS One	10.1371/journal.pone.0204691	2018
	Sporulation is dispensable for the vegetable-associated life cycle of the human pathogen Bacillus cereus.	Antequera-Gomez ML, Diaz-Martinez L, Guadix JA, Sanchez-Tevar AM, Sopena-Torres S, Hierrezuelo J, Doan HK, Leveau JHJ, de Vicente A, Romero D.	Microb Biotechnol	10.1111/1751-7915.13816	2021
	Characterisation of a Hydroxycinnamic Acid Esterase From the Bifidobacterium longum subsp. longum Taxon.	Kelly SM, O'Callaghan J, Kinsella M, van Sinderen D.	Front Microbiol	10.3389/fmicb.2018.02690	2018
Metabolism	Bile acids drive the newborn's gut microbiota maturation.	van Best N, Rolle-Kampczyk U, Schaap FG, Basic M, Olde Damink SWM, Bleich A, Savelkoul PHM, von Bergen M, Penders J, Hornef MW.	Nat Commun	10.1038/s41467-020-17183-8	2020
	Bifidobacterium animalis subsp. lactis decreases urinary oxalate excretion in a mouse model of primary hyperoxaluria.	Klimesova K, Whittamore JM, Hatch M.	Urolithiasis	10.1007/s00240-014-0728-2	2015
	Effects of probiotics (Vivomixx®) in obese pregnant women and their newborn: study protocol for a randomized controlled trial.	Halkjaer SI, Nilas L, Carlsen EM, Cortes D, Halldorsson TI, Olsen SF, Pedersen AE, Krogfelt KA, Petersen AM.	Trials	10.1186/s13063-016-1617-5	2016
	Formation and Characterization of Early Bacterial Biofilms on Different Wood Typologies Applied in Dairy Production.	Cruciata M, Gaglio R, Scatassa ML, Sala G, Cardamone C, Palmeri M, Moschetti G, La Mantia T, Settanni L.	Appl Environ Microbiol	10.1128/aem.02107-17	2018
Metabolism	Dysbiosis by neutralizing commensal mediated inhibition of pathobionts.	Herrero ER, Slomka V, Boon N, Bernaerts K, Hernandez-Sanabria E, Quirynen M, Teughels W.	Sci Rep	10.1038/srep38179	2016
Metabolism	Host-probiotic interaction: new insight into the role of the endocannabinoid system by in vivo and ex vivo approaches.	Gioacchini G, Rossi G, Carnevali O.	Sci Rep	10.1038/s41598-017-01322-1	2017
Enzymology	Separation of the poly(glycerophosphate) lipoteichoic acids of Enterococcus faecalis Kiel 27738, Enterococcus hirae ATCC 9790 and Leuconostoc mesenteroides DSM 20343 into molecular species by affinity chromatography on concanavalin A.	Leopold K, Fischer W.	Eur J Biochem	10.1111/j.1432-1033.1991.tb15839.x	1991
	Amplicon Sequencing of the slpH Locus Permits Culture-Independent Strain Typing of Lactobacillus helveticus in Dairy Products.	Moser A, Wuthrich D, Bruggmann R, Eugster-Meier E, Meile L, Irmler S.	Front Microbiol	10.3389/fmicb.2017.01380	2017
	The Microbiome as a Therapeutic Target for Multiple Sclerosis: Can Genetically Engineered Probiotics Treat the Disease?	Kohl HM, Castillo AR, Ochoa-Reparaz J.	Diseases	10.3390/diseases8030033	2020
	Randomized, controlled trial evaluating the effect of multi-strain probiotic on the mucosal microbiota in canine idiopathic inflammatory bowel disease.	White R, Atherly T, Guard B, Rossi G, Wang C, Mosher C, Webb C, Hill S, Ackermann M, Sciabarra P, Allenspach K, Suchodolski J, Jergens AE.	Gut Microbes	10.1080/19490976.2017.1334754	2017
Phylogeny	Bifidobacterium animalis subsp. lactis ATCC 27673 is a genomically unique strain within its conserved subspecies.	Loquasto JR, Barrangou R, Dudley EG, Stahl B, Chen C, Roberts RF.	Appl Environ Microbiol	10.1128/aem.01777-13	2013
Metabolism	Genomic overview and biological functions of exopolysaccharide biosynthesis in Bifidobacterium spp.	Hidalgo-Cantabrana C, Sanchez B, Milani C, Ventura M, Margolles A, Ruas-Madiedo P.	Appl Environ Microbiol	10.1128/aem.02977-13	2014
Metabolism	Necrotrophic growth of periodontopathogens is a novel virulence factor in oral biofilms.	Rodriguez Herrero E, Boon N, Pauwels M, Bernaerts K, Slomka V, Quirynen M, Teughels W.	Sci Rep	10.1038/s41598-017-01239-9	2017
Genetics	A Genomic Toolkit for the Mechanistic Dissection of Intractable Human Gut Bacteria.	Bisanz JE, Soto-Perez P, Noecker C, Aksenov AA, Lam KN, Kenney GE, Bess EN, Haiser HJ, Kyaw TS, Yu FB, Rekdal VM, Ha CWY, Devkota S, Balskus EP, Dorrestein PC, Allen-Vercoe E, Turnbaugh PJ.	Cell Host Microbe	10.1016/j.chom.2020.04.006	2020
Metabolism	Eruca sativa might influence the growth, survival under simulated gastrointestinal conditions and some biological features of Lactobacillus acidophilus, Lactobacillus plantarum and Lactobacillus rhamnosus strains.	Fratianni F, Pepe S, Cardinale F, Granese T, Cozzolino A, Coppola R, Nazzaro F.	Int J Mol Sci	10.3390/ijms151017790	2014
	Local and systemic immune mechanisms underlying the anti-colitis effects of the dairy bacterium Lactobacillus delbrueckii.	Santos Rocha C, Gomes-Santos AC, Garcias Moreira T, de Azevedo M, Diniz Luerce T, Mariadassou M, Longaray Delamare AP, Langella P, Maguin E, Azevedo V, Caetano de Faria AM, Miyoshi A, van de Guchte M.	PLoS One	10.1371/journal.pone.0085923	2014
	Combined moist airtight storage and feed fermentation of barley by the yeast Wickerhamomyces anomalus and a lactic acid bacteria consortium.	Borling Welin J, Lyberg K, Passoth V, Olstorpe M.	Front Plant Sci	10.3389/fpls.2015.00270	2015
	The emerging role of probiotics as a mitigation strategy against coronavirus disease 2019 (COVID-19).	Mirzaei R, Attar A, Papizadeh S, Jeda AS, Hosseini-Fard SR, Hosseini-Fard SR, Jamasbi E, Kazemi S, Amerkani S, Talei GR, Moradi P, Jalalifar S, Yousefimashouf R, Hossain MA, Keyvani H, Karampoor S.	Arch Virol	10.1007/s00705-021-05036-8	2021
Enzymology	Role of bifidobacteria in the hydrolysis of chlorogenic acid.	Raimondi S, Anighoro A, Quartieri A, Amaretti A, Tomas-Barberan FA, Rastelli G, Rossi M.	Microbiologyopen	10.1002/mbo3.219	2015
Metabolism	Arabinoxylan oligosaccharide hydrolysis by family 43 and 51 glycosidases from Lactobacillus brevis DSM 20054.	Michlmayr H, Hell J, Lorenz C, Bohmdorfer S, Rosenau T, Kneifel W.	Appl Environ Microbiol	10.1128/aem.02130-13	2013
Enzymology	Molecular cloning and characterization of a beta-L-Arabinobiosidase in Bifidobacterium longum that belongs to a novel glycoside hydrolase family.	Fujita K, Sakamoto S, Ono Y, Wakao M, Suda Y, Kitahara K, Suganuma T.	J Biol Chem	10.1074/jbc.m110.190512	2011
	Immune response to Bifidobacterium bifidum strains support Treg/Th17 plasticity.	Lopez P, Gonzalez-Rodriguez I, Gueimonde M, Margolles A, Suarez A.	PLoS One	10.1371/journal.pone.0024776	2011
	Probiotics. Some evidence of their effectiveness.	Reid G, Hammond JA.	Can Fam Physician		2005
	Comparison of the complete genome sequences of Bifidobacterium animalis subsp. lactis DSM 10140 and Bl-04.	Barrangou R, Briczinski EP, Traeger LL, Loquasto JR, Richards M, Horvath P, Coute-Monvoisin AC, Leyer G, Rendulic S, Steele JL, Broadbent JR, Oberg T, Dudley EG, Schuster S, Romero DA, Roberts RF.	J Bacteriol	10.1128/jb.00155-09	2009
Enzymology	High frequency of histamine-producing bacteria in the enological environment and instability of the histidine decarboxylase production phenotype.	Lucas PM, Claisse O, Lonvaud-Funel A.	Appl Environ Microbiol	10.1128/aem.01496-07	2008
Metabolism	Catabolism of glucose and lactose in Bifidobacterium animalis subsp. lactis, studied by 13C Nuclear Magnetic Resonance.	Gonzalez-Rodriguez I, Gaspar P, Sanchez B, Gueimonde M, Margolles A, Neves AR.	Appl Environ Microbiol	10.1128/aem.02529-13	2013
Phylogeny	Classification of a moderately oxygen-tolerant isolate from baby faeces as Bifidobacterium thermophilum.	von Ah U, Mozzetti V, Lacroix C, Kheadr EE, Fliss I, Meile L.	BMC Microbiol	10.1186/1471-2180-7-79	2007
Genetics	Comparative genomics of the Bifidobacterium breve taxon.	Bottacini F, O'Connell Motherway M, Kuczynski J, O'Connell KJ, Serafini F, Duranti S, Milani C, Turroni F, Lugli GA, Zomer A, Zhurina D, Riedel C, Ventura M, van Sinderen D.	BMC Genomics	10.1186/1471-2164-15-170	2014
	Chemical composition and in vitro antimicrobial and mutagenic activities of seven Lamiaceae essential oils.	De Martino L, De Feo V, Nazzaro F.	Molecules	10.3390/molecules14104213	2009
Metabolism	Enzymatic ability of Bifidobacterium animalis subsp. lactis to hydrolyze milk proteins: identification and characterization of endopeptidase O.	Janer C, Arigoni F, Lee BH, Pelaez C, Requena T.	Appl Environ Microbiol	10.1128/aem.71.12.8460-8465.2005	2005
Metabolism	Oxalate-degrading activity in Bifidobacterium animalis subsp. lactis: impact of acidic conditions on the transcriptional levels of the oxalyl coenzyme A (CoA) decarboxylase and formyl-CoA transferase genes.	Turroni S, Bendazzoli C, Dipalo SC, Candela M, Vitali B, Gotti R, Brigidi P.	Appl Environ Microbiol	10.1128/aem.00844-10	2010
Enzymology	Characterization and heterologous expression of the oxalyl coenzyme A decarboxylase gene from Bifidobacterium lactis.	Federici F, Vitali B, Gotti R, Pasca MR, Gobbi S, Peck AB, Brigidi P.	Appl Environ Microbiol	10.1128/aem.70.9.5066-5073.2004	2004
Pathogenicity	Enteral Feeding Interventions in the Prevention of Necrotizing Enterocolitis: A Systematic Review of Experimental and Clinical Studies.	de Lange IH, van Gorp C, Eeftinck Schattenkerk LD, van Gemert WG, Derikx JPM, Wolfs TGAM.	Nutrients	10.3390/nu13051726	2021
Phylogeny	Comparative genomic analyses of 17 clinical isolates of Gardnerella vaginalis provide evidence of multiple genetically isolated clades consistent with subspeciation into genovars.	Ahmed A, Earl J, Retchless A, Hillier SL, Rabe LK, Cherpes TL, Powell E, Janto B, Eutsey R, Hiller NL, Boissy R, Dahlgren ME, Hall BG, Costerton JW, Post JC, Hu FZ, Ehrlich GD.	J Bacteriol	10.1128/jb.00056-12	2012
Phylogeny	Rapid differentiation and in situ detection of 16 sourdough lactobacillus species by multiplex PCR.	Settanni L, van Sinderen D, Rossi J, Corsetti A.	Appl Environ Microbiol	10.1128/aem.71.6.3049-3059.2005	2005
Pathogenicity	Multiparametric flow cytometry and cell sorting for the assessment of viable, injured, and dead bifidobacterium cells during bile salt stress.	Amor KB, Breeuwer P, Verbaarschot P, Rombouts FM, Akkermans AD, De Vos WM, Abee T.	Appl Environ Microbiol	10.1128/aem.68.11.5209-5216.2002	2002
Enzymology	Identification, detection, and enumeration of human bifidobacterium species by PCR targeting the transaldolase gene.	Requena T, Burton J, Matsuki T, Munro K, Simon MA, Tanaka R, Watanabe K, Tannock GW.	Appl Environ Microbiol	10.1128/aem.68.5.2420-2427.2002	2002
Metabolism	Adhesion of bifidobacteria to granular starch and its implications in probiotic technologies.	Crittenden R, Laitila A, Forssell P, Matto J, Saarela M, Mattila-Sandholm T, Myllarinen P.	Appl Environ Microbiol	10.1128/aem.67.8.3469-3475.2001	2001
Phylogeny	Bifidobacterium lactis DSM 10140: identification of the atp (atpBEFHAGDC) operon and analysis of its genetic structure, characteristics, and phylogeny.	Ventura M, Canchaya C, van Sinderen D, Fitzgerald GF, Zink R.	Appl Environ Microbiol	10.1128/aem.70.5.3110-3121.2004	2004
	Screening of probiotic activities of forty-seven strains of Lactobacillus spp. by in vitro techniques and evaluation of the colonization ability of five selected strains in humans.	Jacobsen CN, Rosenfeldt Nielsen V, Hayford AE, Moller PL, Michaelsen KF, Paerregaard A, Sandstrom B, Tvede M, Jakobsen M.	Appl Environ Microbiol	10.1128/aem.65.11.4949-4956.1999	1999
Genetics	Analysis of the genome sequence of Lactobacillus gasseri ATCC 33323 reveals the molecular basis of an autochthonous intestinal organism.	Azcarate-Peril MA, Altermann E, Goh YJ, Tallon R, Sanozky-Dawes RB, Pfeiler EA, O'Flaherty S, Buck BL, Dobson A, Duong T, Miller MJ, Barrangou R, Klaenhammer TR.	Appl Environ Microbiol	10.1128/aem.00054-08	2008
Phylogeny	Bifidobacterium primatium sp. nov., Bifidobacterium scaligerum sp. nov., Bifidobacterium felsineum sp. nov. and Bifidobacterium simiarum sp. nov.: Four novel taxa isolated from the faeces of the cotton top tamarin (Saguinus oedipus) and the emperor tamarin (Saguinus imperator).	Modesto M, Puglisi E, Bonetti A, Michelini S, Spiezio C, Sandri C, Sgorbati B, Morelli L, Mattarelli P.	Syst Appl Microbiol	10.1016/j.syapm.2018.07.005	2018
Phylogeny	Anoxybacillus gonensis sp. nov., a moderately thermophilic, xylose-utilizing, endospore-forming bacterium.	Belduz AO, Dulger S, Demirbag Z.	Int J Syst Evol Microbiol	10.1099/ijs.0.02473-0	2003
	Alkaliphilus flagellatus sp. nov., Butyricicoccus intestinisimiae sp. nov., Clostridium mobile sp. nov., Clostridium simiarum sp. nov., Dysosmobacter acutus sp. nov., Paenibacillus brevis sp. nov., Peptoniphilus ovalis sp. nov. and Tissierella simiarum sp. nov., isolated from monkey faeces.	Li DH, Abuduaini R, Du MX, Wang YJ, Chen HH, Zhou N, Zhu HZ, Lu Y, Yu PJ, Yang YP, Jiang CY, Sun Q, Liu C, Liu SJ.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005276	2022
Phylogeny	Lactobacillus silagei sp. nov., isolated from orchardgrass silage.	Tohno M, Kitahara M, Irisawa T, Masuda T, Uegaki R, Ohkuma M, Tajima K	Int J Syst Evol Microbiol	10.1099/ijs.0.053124-0	2013
Phylogeny	Lactobacillus similis sp. nov., isolated from fermented cane molasses.	Kitahara M, Sakamoto M, Benno Y	Int J Syst Evol Microbiol	10.1099/ijs.0.011551-0	2009
Phylogeny	Characterization of two novel pentose-fermenting and GABA-producing species: Levilactobacillus tujiorum sp. nov. and Secundilactobacillus angelensis sp. nov. Isolated from a solid-state fermented zha-chili.	Zhang Z, Wang Y, Dong Y, Xiang F, Zhang Y, Zhang H, Sun Y, Guo Z	Syst Appl Microbiol	10.1016/j.syapm.2022.126344	2022

References

#16808	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23365
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#25771	IJSEM 187 2010 ( DOI 10.1099/ijs.0.011551-0 , PubMed 19648343 )
#29360	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25771
#40415	; Curators of the CIP;
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122618	Collection of Institut Pasteur ; Curators of the CIP; CIP 110209
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Secundilactobacillus similis (DSM 23365, JCM 2765, LMG 23904)

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