Name: Lactobacillus taiwanensis FI RDI 006
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6690

Type strain:

Species: Lactobacillus taiwanensis

Strain Designation: FI RDI 006

Culture col. no.: DSM 21401, BCRC 17755, CIP 110030, JCM 18086

Strain history: CIP <- 2009, DSMZ

NCBI tax ID(s): 1423809 (strain), 508451 (species)

SI-ID 363648

BCRC 17755, DSM 21401, CIP 110030, LMG 26978

Other strains from Lactobacillus taiwanensis

L. taiwanensis ST-465-5-N, DSM 28674
L. taiwanensis MJJ0609-8, DSM 100220
L. taiwanensis CCUG 60241
L. taiwanensis JCM 8667
L. taiwanensis JCM 8675
L. taiwanensis JCM 8687
L. taiwanensis JCM 8694

Section

Lactobacillus taiwanensis FI RDI 006 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from silage cattle feed.

Gram-positive
rod-shaped
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Lactobacillus*
	Species	**Lactobacillus taiwanensis**
	Full Scientific Name (LPSN)	Lactobacillus taiwanensis Wang et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29122]	Gram stain	positive
[Ref.: #123422]	Gram stain	positive

[Ref.: #29122]	Cell length	11 µm

[Ref.: #29122]	Cell width	0.75 µm

[Ref.: #29122]	Cell shape	rod-shaped
[Ref.: #123422]	Cell shape	rod-shaped

[Ref.: #29122]	Motility	no
[Ref.: #123422]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15686]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #15686]

Culture medium growth

[Ref.: #15686]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15686]

Culture medium composition

expand / minimize

[Ref.: #37897]

Culture medium

MEDIUM 20 - for Anaerobic bacteria

[Ref.: #37897]

Culture medium growth

[Ref.: #37897]

Culture medium composition

expand / minimize

[Ref.: #123422]

Culture medium

CIP Medium 20

[Ref.: #123422]

Culture medium growth

[Ref.: #123422]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #123422]

Culture medium

CIP Medium 40

[Ref.: #123422]

Culture medium growth

[Ref.: #123422]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #15686]	growth	37 °C
[Ref.: #29122]	growth	30-45 °C
[Ref.: #29122]	optimum	37 °C
[Ref.: #37897]	growth	37 °C
[Ref.: #67770]	growth	37 °C
[Ref.: #123422]	growth	15-45 °C

[Ref.: #15686]	Temperature range	mesophilic
[Ref.: #29122]	Temperature range	mesophilic
[Ref.: #37897]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29122]			growth	4.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #15686]	Oxygen tolerance	microaerophile
[Ref.: #29122]	Oxygen tolerance	anaerobe
[Ref.: #123422]	Oxygen tolerance	facultative anaerobe

[Ref.: #29122]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29122]		NaCl		optimum	5	%

[Ref.: #29122]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #29122]	esculin ChEBI	+	hydrolysis
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #29122]	fructose ChEBI	+	carbon source
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #29122]	galactose ChEBI	+	carbon source
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #29122]	glucose ChEBI	+	carbon source
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #29122]	lactose ChEBI	+	carbon source
[Ref.: #68371]	lactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #29122]	maltose ChEBI	+	carbon source
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #29122]	mannose ChEBI	+	carbon source
[Ref.: #68371]	melezitose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #123422]	nitrate ChEBI	-	reduction
[Ref.: #123422]	nitrate ChEBI	+	respiration
[Ref.: #123422]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #29122]	sucrose ChEBI	+	carbon source
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #29122]	trehalose ChEBI	+	carbon source
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #123422]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #123422]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	+	3.2.1.31	* from API zym
[Ref.: #123422]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #123422]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123422]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #123422]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #15686]	14738	-	-	-	-	-	+	-	-	-	-	+	+	+	+	+	-	-	-	+	-	-	-	+	+	+	+	+	+	+	+	-	+	+	-	+	-	+	-	-	+	+	-	+	-	-	-	-	+	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123422]	12304	-	+	+	+	-	+	+	-	-	-	+	+	-	+	+	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15686]	Sample type/isolated from	silage cattle feed
[Ref.: #15686]	Geographic location (country and/or sea, region)	Miaoli, Jhunan
[Ref.: #15686]	Country	Taiwan
[Ref.: #15686]	Country ISO 3 Code	TWN
[Ref.: #15686]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Silage cattle feed
[Ref.: #67770]	Country	Taiwan
[Ref.: #67770]	Country ISO 3 Code	TWN
[Ref.: #67770]	Continent	Asia

[Ref.: #123422]	Sample type/isolated from	Silage cattle feed
[Ref.: #123422]	Country	Taiwan
[Ref.: #123422]	Country ISO 3 Code	TWN
[Ref.: #123422]	Continent	Asia
[Ref.: #123422]	Isolation date	2006
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC521984 (>99% sequence identity) for Lactobacillus from Microbeatlas

Aquatic Samples	5652
Soil Samples	4782
Animal Samples	173268
Plant Samples	1535
Total Samples	185237

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15686]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123422]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus taiwanensis JCM 18086 gene for 16S rRNA, partial sequence	LC521984	1506	ENA	508451 tax ID
[Ref.: #15686]	Lactobacillus taiwanensis strain BCRC 17755 16S ribosomal RNA gene, partial sequence	EU487512	1526	ENA	508451 tax ID
[Ref.: #20218]	Lactobacillus taiwanensis partial 16S rRNA gene, type strain CIP 110030T	HE573918	1509	ENA	508451 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus taiwanensis DSM 21401	GCA_001436695	scaffold	GenBank	1423809 tax ID
[Ref.: #66792]	Lactobacillus taiwanensis DSM 21401	1423809.3	wgs	PATRIC	1423809 tax ID	*
[Ref.: #66792]	Lactobacillus taiwanensis DSM 21401	2660238553	draft	JGI IMG/M	1423809 tax ID	*

[Ref.: #15686]	GC-content	35.8 mol%
[Ref.: #67770]	GC-content	35.8 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	34 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillus taiwanensis DSM 21401 PATRIC: 1423809.3
[Ref.: #69480]	motile	no	96.136	yes
[Ref.: #69480]	gram-positive	yes	95.928	no
[Ref.: #69480]	anaerobic	no	65.044	no
[Ref.: #69480]	halophile	yes	85.143	no
[Ref.: #69480]	spore-forming	no	94.961	no
[Ref.: #69480]	thermophile	no	99.79	yes
[Ref.: #69480]	glucose-util	yes	91.112	yes
[Ref.: #69480]	aerobic	no	97.511	no
[Ref.: #69480]	flagellated	no	98.045	no
[Ref.: #69480]	glucose-ferment	yes	91.397	no

Availability in culture collections External links

[Ref.: #15686]

Culture collection no.

DSM 21401, BCRC 17755, CIP 110030, JCM 18086

[Ref.: #76164]

SI-ID 363648

Literature:

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Expression of FABP4, adipsin and adiponectin in Paneth cells is modulated by gut Lactobacillus.	Su X, Yan H, Huang Y, Yun H, Zeng B, Wang E, Liu Y, Zhang Y, Liu F, Che Y, Zhang Z, Yang R	Sci Rep	10.1038/srep18588	2015	*
Phylogeny	Lactobacillus taiwanensis sp. nov., isolated from silage.	Wang LT, Kuo HP, Wu YC, Tai CJ, Lee FL	Int J Syst Evol Microbiol	10.1099/ijs.0.006783-0	2009	*

References

#15686

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21401

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#29122

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25548 (see below)

#37897 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#76164

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID363648.1 )

#123422 Collection of Institut Pasteur ; Curators of the CIP; CIP 110030

#25548

IJSEM 2064 2009 ( DOI 10.1099/ijs.0.006783-0 , PubMed 19605711 )

* These data were automatically processed and therefore are not curated

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Lactobacillus taiwanensis DSM 21401

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Change proposal