Lactiplantibacillus fabifermentans (DSM 21115, LMG 24284, R-34115)

Name: Lactiplantibacillus fabifermentans (DSM 21115, LMG 24284, R-34115)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6682

Type strain

Strain Designation R-34115

Culture col. no. DSM 21115 LMG 24284 R-34115

NCBI tax ID(s) 1413187 483011

Special Collections DSMZ Literature strains

History <- L. De Vuyst and K. De Bruyne <- N. Camu, Vrije Univ. Brussels, Belgium; R-34115

Links

Lactiplantibacillus fabifermentans R-34115 is a microaerophile, mesophilic, Gram-positive prokaryote that was isolated from cocoa bean heap fermentation.

Gram-positive rod-shaped microaerophile mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 311003

LMG24284,DSM 21115

@ref 20215

Last LPSN update 2025-12-16 09:48:23

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Lactiplantibacillus

Species Lactiplantibacillus fabifermentans

Full scientific name Lactiplantibacillus fabifermentans (De Bruyne et al. 2009) Zheng et al. 2020

Synonyms (1)

Lactobacillus fabifermentans

BacDive ID	Other strains from **Lactiplantibacillus fabifermentans** (1)	Type strain
140024	L. fabifermentans T30 PCM01, T30PCM01, DSM 28391

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
28904	positive	10 µm	2 µm	rod-shaped
125438	positive					92.159

Pigmentation

28904

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
15486	MRS MEDIUM (DSMZ Medium 11)		Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
15486	positive	growth	30	mesophilic
28904	positive	growth	10-37
28904	positive	optimum	23.5	psychrophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
15486	microaerophile
28904	facultative anaerobe
125439	microaerophile	95.4

Spore formation

@ref	Spore formation	Confidence
125439		93.1

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	+	builds acid from	from API 50CH acid
28904	22599 ChEBI	arabinose	+	carbon source
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
28904	17057 ChEBI	cellobiose	+	carbon source
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
28904	4853 ChEBI	esculin	+	hydrolysis
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
28904	28757 ChEBI	fructose	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
28904	28260 ChEBI	galactose	+	carbon source
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
28904	17234 ChEBI	glucose	+	carbon source
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
28904	17306 ChEBI	maltose	+	carbon source
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
28904	29864 ChEBI	mannitol	+	carbon source
28904	37684 ChEBI	mannose	+	carbon source
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
28904	33942 ChEBI	ribose	+	carbon source
28904	17814 ChEBI	salicin	+	carbon source
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
28904	17992 ChEBI	sucrose	+	carbon source
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
28904	27082 ChEBI	trehalose	+	carbon source
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid
28904	18222 ChEBI	xylose	+	carbon source

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
15486	-	-	-	-	+	-	-	-	-	-	+	+	+	+	-	-	-	-	+	-	-	-	+	+	+	+	+	+	+	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
15486	-	-	-	-	+	+	+	-	-	-	+	+	+	+	-	-	-	-	+	-	-	-	+	+	+	+	+	+	+	-	-	+	+	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	-
#Host Body-Site	#Plant	#Fruit (Seed)

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
15486	cocoa bean heap fermentation	Ghana	GHA	Africa

Taxonmaps

69479

Global distribution of 16S sequence AM905388 (>99% sequence identity) for Lactobacillaceae from Microbeatlas

Aquatic Samples	4479
Soil Samples	2696
Animal Samples	29069
Plant Samples	2393
Total Samples	38637

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15486	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	NMG01 assembly for Lactiplantibacillus fabifermentans DSM 21115	scaffold	GCA_000498955	1578.21	2563367174	1413187	39.31

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Lactobacillus fabifermentans gene for 16S rRNA, partial sequence, strain: DSM 21115	AB626075	1491		483011
15486	Lactobacillus fabifermentans partial 16S rRNA gene, type strain LMG 24284T	AM905388	1532		483011

GC content

15486

GC-content (mol%)44.9

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lactiplantibacillus fabifermentans DSM 21115
NCBI: GCA_000498955

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	93.10	no
125439	motility	BacteriaNetⓘ	no	73.50	no
125439	gram_stain	BacteriaNetⓘ	positive	85.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	95.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lacticaseibacillus fabifermentans DSM 21115 DSM 21115
NCBI: GCA_000498955.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.16	yes
125438	anaerobic	anaerobicⓘ	no	86.39	yes
125438	aerobic	aerobicⓘ	no	93.39	yes
125438	spore-forming	spore-formingⓘ	no	79.75	no
125438	thermophilic	thermophileⓘ	no	96.08	no
125438	flagellated	motile2+ⓘ	no	87.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Isolation and Identification of Chicken-Derived Lactic Acid Bacteria: In Vitro Probiotic Properties and Antagonistic Effects against Salmonella pullorum, Staphylococcus aureus, and Escherichia coli.	Tian C, Wang L, Liu M, Liu J, Qiu M, Chen Y.	Microorganisms	10.3390/microorganisms12040795	2024
	Effect of coadministration of Lactiplantibacillus fabifermentans and linear/branched fructans mixtures on the intestinal health of Wistar rats.	Ramirez-Perez JI, Abud-Archila M, Ovando-Chacon SL, Soria-Guerra RE, Ruiz-Cabrera MA, Godinez-Hernandez CI, Grajales-Lagunes A.	Int J Biol Macromol	10.1016/j.ijbiomac.2023.125748	2023
	Effect of linear and branched fructans on growth and probiotic characteristics of seven Lactobacillus spp. isolated from an autochthonous beverage from Chiapas, Mexico.	Ramirez-Perez JI, Alvarez-Gutierrez PE, Lujan-Hidalgo MC, Ovando-Chacon SL, Soria-Guerra RE, Ruiz-Cabrera MA, Grajales-Lagunes A, Abud-Archila M.	Arch Microbiol	10.1007/s00203-022-02984-w	2022
	Exploration of Lactiplantibacillus fabifermentans and Furfurilactobacillus rossiae as potential cocoa fermentation starters.	Korcari D, Ricci G, Fanton A, Emide D, Barbiroli A, Fortina MG.	J Appl Microbiol	10.1111/jam.15687	2022
	Characterization of microbiota of naturally fermented sauerkraut by high-throughput sequencing.	Zhang S, Zhang Y, Wu L, Zhang L, Wang S.	Food Sci Biotechnol	10.1007/s10068-022-01221-w	2023
	Fine Cocoa Fermentation with Selected Lactic Acid Bacteria: Fermentation Performance and Impact on Chocolate Composition and Sensory Properties.	Korcari D, Fanton A, Ricci G, Rabitti NS, Laureati M, Hogenboom J, Pellegrino L, Emide D, Barbiroli A, Fortina MG.	Foods	10.3390/foods12020340	2023
	Sugar lowering in fermented apple-pear juice orchestrates a promising metabolic answer in the gut microbiome and intestinal integrity.	Tlais AZA, Polo A, Granehall L, Filannino P, Vincentini O, De Battistis F, Di Cagno R, Gobbetti M.	Curr Res Food Sci	10.1016/j.crfs.2024.100833	2024
Phylogeny	Lactobacillus mudanjiangensis sp. nov., Lactobacillus songhuajiangensis sp. nov. and Lactobacillus nenjiangensis sp. nov., isolated from Chinese traditional pickle and sourdough.	Gu CT, Li CY, Yang LJ, Huo GC	Int J Syst Evol Microbiol	10.1099/ijs.0.054296-0	2013
Phylogeny	Lactobacillus fabifermentans sp. nov. and Lactobacillus cacaonum sp. nov., isolated from Ghanaian cocoa fermentations.	De Bruyne K, Camu N, De Vuyst L, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijs.0.001172-0	2009

References

#15486	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21115
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#25343	IJSEM 7 2009 ( DOI 10.1099/ijs.0.001172-0 , PubMed 19126714 )
#28904	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25343
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68371	Automatically annotated from API 50CH acid .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Lactiplantibacillus fabifermentans (DSM 21115, LMG 24284, R-34115)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000498955

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media