Name: Levilactobacillus namurensis DSM 19117
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6667

Type strain:

Species: Levilactobacillus namurensis

Culture col. no.: DSM 19117, CCUG 52843, CIP 109498, LMG 23583, JCM 15612, BCRC 80773, NBRC 107158

Strain history: CIP <- 2007, CCUG <- 2006, LMG

NCBI tax ID(s): 1423773 (strain), 380393 (species)

SI-ID 133812

LMG 23583, CCUG 52843, DSM 19117, CIP 109498, JCM 15612

Special Collections

Section

Levilactobacillus namurensis DSM 19117 is a microaerophile, Gram-positive, rod-shaped bacterium that was isolated from sourdough, manufactured with wheat, rye and spelt flour.

Gram-positive
rod-shaped
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Levilactobacillus*
	Species	**Levilactobacillus namurensis**
	Full Scientific Name (LPSN)	Levilactobacillus namurensis (Scheirlinck et al. 2007) Zheng et al. 2020

Synonym

Lactobacillus namurensis

Information on morphological and physiological properties Morphology

[Ref.: #31892]	Gram stain	positive
[Ref.: #121230]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %95.585

[Ref.: #31892]	Cell length	6 µm

[Ref.: #31892]	Cell width	0.75 µm

[Ref.: #31892]	Cell shape	rod-shaped
[Ref.: #121230]	Cell shape	rod-shaped

[Ref.: #31892]	Motility	no
[Ref.: #121230]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %90

[Ref.: #59682]

Incubation period

1 day

[Ref.: #31892]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7916]

Culture medium

PEDIOCOCCUS DAMNOSUS MEDIUM (DSMZ Medium 231)

[Ref.: #7916]

Culture medium growth

[Ref.: #7916]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7916]

Culture medium composition

expand / minimize

[Ref.: #37563]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #37563]

Culture medium growth

[Ref.: #37563]

Culture medium composition

expand / minimize

[Ref.: #121230]

Culture medium

CIP Medium 40

[Ref.: #121230]

Culture medium growth

[Ref.: #121230]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #7916]		growth	30 °C
[Ref.: #31892]		optimum	15 °C
[Ref.: #37563]		growth	30 °C
[Ref.: #59682]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #121230]		growth	15-37 °C
[Ref.: #121230]	no	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #7916]	Oxygen tolerance	microaerophile
[Ref.: #31892]	Oxygen tolerance	facultative anaerobe
[Ref.: #59682]	Oxygen tolerance	aerobe
[Ref.: #59682]	Oxygen tolerance	anaerobe

[Ref.: #31892]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31892]		NaCl		growth	05-07	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31892]	arginine ChEBI	+	carbon source
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31892]	esculin ChEBI	+	hydrolysis
[Ref.: #31892]	fructose ChEBI	+	carbon source
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31892]	galactose ChEBI	+	carbon source
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31892]	gluconate ChEBI	+	carbon source
[Ref.: #68371]	gluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31892]	glucose ChEBI	+	carbon source
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31892]	maltose ChEBI	+	carbon source
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31892]	mannitol ChEBI	+	carbon source
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31892]	melibiose ChEBI	+	carbon source
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31892]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #121230]	nitrate ChEBI	-	reduction
[Ref.: #121230]	nitrate ChEBI	+	respiration
[Ref.: #121230]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31892]	ribose ChEBI	+	carbon source
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #121230]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #121230]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #121230]	alcohol dehydrogenase	+	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #121230]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #121230]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121230]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #121230]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #121230]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #7916]	14388	-	-	-	-	+	+	+	-	-	+	+	+	+	-	-	-	-	-	+/-	-	-	+	+	-	-	+	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-
[Ref.: #121230]	11573	not determinedn.d.	-	-	-	+/-	+	-	-	-	+	+/-	+/-	+	-	-	-	-	-	-	-	-	+/-	+/-	-	-	+/-	-	-	+	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121230]	11910	-	+	+	+	-	+	-	+	-	+	+	+	+	+	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7916]	Sample type/isolated from	sourdough, manufactured with wheat, rye and spelt flour
[Ref.: #7916]	Geographic location (country and/or sea, region)	Namur
[Ref.: #7916]	Country	Belgium
[Ref.: #7916]	Country ISO 3 Code	BEL
[Ref.: #7916]	Continent	Europe

[Ref.: #59682]	Sample type/isolated from	Sourdough based on wheat,rye and spelt flour
[Ref.: #59682]	Sampling date	2004-08-30
[Ref.: #59682]	Geographic location (country and/or sea, region)	Namur
[Ref.: #59682]	Country	Belgium
[Ref.: #59682]	Country ISO 3 Code	BEL
[Ref.: #59682]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Belgian sourdough

[Ref.: #121230]	Sample type/isolated from	Food, Sourdough based on wheat, rye and spelt flour
[Ref.: #121230]	Geographic location (country and/or sea, region)	Namur
[Ref.: #121230]	Country	Belgium
[Ref.: #121230]	Country ISO 3 Code	BEL
[Ref.: #121230]	Continent	Europe
[Ref.: #121230]	Isolation date	2004
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Food
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC483562 (>99% sequence identity) for Levilactobacillus namurensis from Microbeatlas

Aquatic Samples	82
Soil Samples	222
Animal Samples	1349
Plant Samples	108
Total Samples	1761

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7916]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121230]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus namurensis gene for 16S ribosomal RNA, partial sequence	LC483562	1509	GenBank ENA	380393 tax ID
[Ref.: #7916]	Lactobacillus namurensis partial pheS gene for phenylalanyl-tRNA synthetase alpha chain, type strain LMG 23583T	AM259120	392	GenBank ENA	380393 tax ID
[Ref.: #31892]	Lactobacillus namurensis partial 16S rRNA gene, type strain LMG 23584T	AM259119	1518	GenBank ENA	380393 tax ID
[Ref.: #124043]	Lactobacillus namurensis gene for 16S rRNA, partial sequence, strain: NBRC 107158.	AB626072	1491	GenBank ENA	380393 tax ID	*
[Ref.: #20218]	Lactobacillus namurensis partial 16S rRNA gene, type strain LMG 23583T	AM259118	1518	GenBank ENA	380393 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Levilactobacillus namurensis DSM 19117	GCA_001434785	scaffold	GenBank ENA	1423773 tax ID
[Ref.: #67770]	Levilactobacillus namurensis NBRC 107158	GCA_007992015	contig	GenBank ENA	380393 tax ID
[Ref.: #66792]	Lactobacillus namurensis DSM 19117	1423773.3	wgs	PATRIC	1423773 tax ID	*
[Ref.: #66792]	Lactobacillus namurensis strain NBRC 107158	380393.5	wgs	PATRIC	380393 tax ID	*
[Ref.: #66792]	Levilactobacillus namurensis DSM 19117	2695420716	draft	JGI IMG/M	1423773 tax ID	*

[Ref.: #7916]	GC-content	52 mol%
[Ref.: #67770]	GC-content	52 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	52 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Levilactobacillus namurensis DSM 19117 DSM 19117 NCBI: GCA_001434785.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillus namurensis DSM 19117 PATRIC: 1423773.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	95.585	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	84.248	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	83.515	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	95.227	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.5	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90	yes

Availability in culture collections External links

[Ref.: #7916]

Culture collection no.

DSM 19117, CCUG 52843, CIP 109498, LMG 23583, JCM 15612, BCRC 80773, NBRC 107158

[Ref.: #76141]

SI-ID 133812

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus namurensis sp. nov., isolated from a traditional Belgian sourdough.	Scheirlinck I, Van der Meulen R, Van Schoor A, Cleenwerck I, Huys G, Vandamme P, De Vuyst L, Vancanneyt M	Int J Syst Evol Microbiol	10.1099/ijs.0.64607-0	2007	*

References

#7916

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19117

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31892

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28151 (see below)

#37563 ; Curators of the CIP;
#59682 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 52843

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76141

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID133812.1 )

#121230 Collection of Institut Pasteur ; Curators of the CIP; CIP 109498

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#28151

IJSEM 223 2007 ( DOI 10.1099/ijs.0.64607-0 , PubMed 17267954 )

* These data were automatically processed and therefore are not curated

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Levilactobacillus namurensis DSM 19117 DSM 19117

Lactobacillus namurensis DSM 19117

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