Lapidilactobacillus concavus (DSM 17758, AS 1.5017, LMG 22739)

Name: Lapidilactobacillus concavus (DSM 17758, AS 1.5017, LMG 22739)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6636

Type strain

Strain Designation C-5-1

Culture col. no. DSM 17758 AS 1.5017 LMG 22739 C-5-1 NBRC 106101 4 more

NCBI tax ID(s) 1423735 287844

Special Collections DSMZ JCM CIP Literature strains

History <- X. Dong; C-5-1 AS 1.5017 <-- H. Tong C-5-1. CIP <- 2005, X. Dong, Chinese Academy Sciences, Beijing, China: strain C-5-1

Links

Lapidilactobacillus concavus C-5-1 is a microaerophile, Gram-positive, rod-shaped bacterium that was isolated from distilled pirit-fermenting cellar.

Gram-positive rod-shaped microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 134034

NBRC 106101,LMG 22739,AS 1.5017,DSM 17758,JCM 14153,CGMCC 1.5017,VTT E-052938,CIP 108991

@ref 20215

Last LPSN update 2026-02-09 11:19:16

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Lapidilactobacillus

Species Lapidilactobacillus concavus

Full scientific name Lapidilactobacillus concavus (Tong and Dong 2005) Zheng et al. 2020

Synonyms (1)

Lactobacillus concavus

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31423	positive	2.25 µm	0.55 µm	rod-shaped
118720	positive			rod-shaped
125438					94.021
125438	positive				94.159

Pigmentation

31423

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7172	MRS MEDIUM (DSMZ Medium 11)	Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
38373	MEDIUM 40- for Lactobacillus and Leuconostoc		Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
118720	CIP Medium 40	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
7172	positive	growth	37
31423	positive	growth	10-42
31423	positive	optimum	33.5
38373	positive	growth	37
67770	positive	growth	37

Culture pH

@ref	Ability	Type	PH	PH range
31423	positive	optimum	6.2
31423	positive	growth	3.8-8.1	acidophile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
7172	microaerophile
31423	facultative anaerobe
118720	facultative anaerobe
125439	obligate aerobe	99

Spore formation

31423

Spore formationno

Observation

31423

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31423	17057 ChEBI	cellobiose	+	carbon source
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
31423	4853 ChEBI	esculin	+	hydrolysis
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
31423	28757 ChEBI	fructose	+	carbon source
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
31423	5417 ChEBI	glucosamine	+	carbon source
31423	17234 ChEBI	glucose	+	carbon source
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
31423	17306 ChEBI	maltose	+	carbon source
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
118720	17632 ChEBI	nitrate	-	reduction
118720	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
31423	17814 ChEBI	salicin	+	carbon source
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	+	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
31423	27082 ChEBI	trehalose	+	carbon source
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
118720	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
118720	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
118720	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
118720	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
118720	ornithine decarboxylase	-	4.1.1.17
118720	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
118720	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	acetate fermentation	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	formaldehyde oxidation	100	3 of 3
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	teichoic acid biosynthesis	100	1 of 1
66794	chorismate metabolism	88.89	8 of 9
66794	peptidoglycan biosynthesis	86.67	13 of 15
66794	palmitate biosynthesis	81.82	18 of 22
66794	cellulose degradation	80	4 of 5
66794	phenylalanine metabolism	76.92	10 of 13
66794	dTDPLrhamnose biosynthesis	75	6 of 8
66794	ppGpp biosynthesis	75	3 of 4
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	glycolysis	70.59	12 of 17
66794	starch degradation	70	7 of 10
66794	Entner Doudoroff pathway	70	7 of 10
66794	NAD metabolism	66.67	12 of 18
66794	acetoin degradation	66.67	2 of 3
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	valine metabolism	66.67	6 of 9
66794	d-mannose degradation	66.67	6 of 9
66794	photosynthesis	64.29	9 of 14
66794	d-xylose degradation	63.64	7 of 11
66794	ketogluconate metabolism	62.5	5 of 8
66794	gluconeogenesis	62.5	5 of 8
66794	methionine metabolism	61.54	16 of 26
66794	oxidative phosphorylation	60.44	55 of 91
66794	glycogen metabolism	60	3 of 5
66794	flavin biosynthesis	60	9 of 15
66794	purine metabolism	59.57	56 of 94
66794	pyrimidine metabolism	57.78	26 of 45
66794	aspartate and asparagine metabolism	55.56	5 of 9
66794	serine metabolism	55.56	5 of 9
66794	pentose phosphate pathway	54.55	6 of 11
66794	degradation of pentoses	53.57	15 of 28
66794	non-pathway related	52.63	20 of 38
66794	butanoate fermentation	50	2 of 4
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	CMP-KDO biosynthesis	50	2 of 4
66794	C4 and CAM-carbon fixation	50	4 of 8
66794	sulfopterin metabolism	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	glycogen biosynthesis	50	2 of 4
66794	threonine metabolism	50	5 of 10
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	50	4 of 8
66794	adipate degradation	50	1 of 2
66794	selenocysteine biosynthesis	50	3 of 6
66794	vitamin B1 metabolism	46.15	6 of 13
66794	metabolism of disaccharids	45.45	5 of 11
66794	degradation of hexoses	44.44	8 of 18
66794	degradation of sugar acids	44	11 of 25
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	mevalonate metabolism	42.86	3 of 7
66794	tetrahydrofolate metabolism	42.86	6 of 14
66794	glutathione metabolism	42.86	6 of 14
66794	propanol degradation	42.86	3 of 7
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	glycine metabolism	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	glutamate and glutamine metabolism	39.29	11 of 28
66794	alanine metabolism	37.93	11 of 29
66794	isoleucine metabolism	37.5	3 of 8
66794	lipid metabolism	35.48	11 of 31
66794	octane oxidation	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	lysine metabolism	33.33	14 of 42
66794	sphingosine metabolism	33.33	2 of 6
66794	L-lactaldehyde degradation	33.33	1 of 3
66794	degradation of sugar alcohols	31.25	5 of 16
66794	leucine metabolism	30.77	4 of 13
66794	myo-inositol biosynthesis	30	3 of 10
66794	reductive acetyl coenzyme A pathway	28.57	2 of 7
66794	cysteine metabolism	27.78	5 of 18
66794	proline metabolism	27.27	3 of 11
66794	tryptophan metabolism	26.32	10 of 38
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	histidine metabolism	24.14	7 of 29
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	urea cycle	23.08	3 of 13
66794	sulfate reduction	23.08	3 of 13
66794	isoprenoid biosynthesis	23.08	6 of 26
66794	nitrate assimilation	22.22	2 of 9
66794	molybdenum cofactor biosynthesis	22.22	2 of 9
66794	CO2 fixation in Crenarchaeota	22.22	2 of 9
66794	tyrosine metabolism	21.43	3 of 14
66794	arginine metabolism	20.83	5 of 24

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
118720	-	-	-	-	-	+	+	-	-	-	+	+	-	-	-	+	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
118720	not determinedn.d.	-	-	-	+/-	-	+/-	-	-	-	-	+	+/-	-	-	-	-	-	-	-	-	-	+	+/-	+/-	+	+	+	+	-	-	-	+	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Fermented
#Engineered	#Food production	#Beverage

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
7172	distilled pirit-fermenting cellar	Hebei Province	China	CHN	Asia
67770	Distilled-spirit-fermenting cellar
118720	Distilled spirit fermenting cellar walls	Hebei	China	CHN	Asia	2004

Taxonmaps

69479

Global distribution of 16S sequence LC258135 (>99% sequence identity) for Lapidilactobacillus from Microbeatlas

Aquatic Samples	581
Soil Samples	734
Animal Samples	2349
Plant Samples	163
Total Samples	3827

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7172	1	Risk group (German classification) According to TRBA 466
118720	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM143583v1 assembly for Lapidilactobacillus concavus DSM 17758	scaffold	GCA_001435835	1423735.3	2671180578	1423735	57.21
67770	ASM798902v1 assembly for Lapidilactobacillus concavus NBRC 106101	contig	GCA_007989025	287844.3	8065105112	287844	56.43

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
7172	Lactobacillus concavus strain AS 1.5017 16S ribosomal RNA gene, partial sequence	AY683322	1528	287844
67770	Lactobacillus concavus gene for 16S ribosomal RNA, partial sequence, strain: JCM 14153	LC258135	1515	287844
124043	Lactobacillus concavus gene for 16S rRNA, partial sequence, strain: NBRC 106101.	AB682360	1499	287844

GC content

@ref	GC-content (mol%)	Method
7172	46.9
31423	46.4
67770	46.4	thermal denaturation, midpoint method (Tm)
67770	43.3	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lapidilactobacillus concavus DSM 17758
NCBI: GCA_001435835

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	73.60	no
125439	motility	BacteriaNetⓘ	no	56.10	no
125439	gram_stain	BacteriaNetⓘ	positive	84.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus concavus DSM 17758
PATRIC: 1423735.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	94.16	no
125438	anaerobic	anaerobicⓘ	no	85.12	yes
125438	spore-forming	spore-formingⓘ	no	89.38	yes
125438	aerobic	aerobicⓘ	no	97.13	yes
125438	thermophilic	thermophileⓘ	no	94.99	yes
125438	flagellated	motile2+ⓘ	no	94.02	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus concavus sp. nov., isolated from the walls of a distilled spirit fermenting cellar in China.	Tong H, Dong X	Int J Syst Evol Microbiol	10.1099/ijs.0.63509-0	2005

References

#7172	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17758
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27730	IJSEM 2199 2005 ( DOI 10.1099/ijs.0.63509-0 , PubMed 16166732 )
#31423	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27730
#38373	; Curators of the CIP;
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#118720	Collection of Institut Pasteur ; Curators of the CIP; CIP 108991
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lapidilactobacillus concavus (DSM 17758, AS 1.5017, LMG 22739)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Metabolite production

Enzymes

Pathway annotation

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001435835

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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