Paucilactobacillus oligofermentans (DSM 15707, CIP 109911, JCM 16175)

Name: Paucilactobacillus oligofermentans (DSM 15707, CIP 109911, JCM 16175)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6633

Type strain

Strain Designation AMKR18, AV56

Culture col. no. DSM 15707 CIP 109911 JCM 16175 LMG 22743 CCUG 52263 3 more

NCBI tax ID(s) 293371

Special Collections DSMZ CCUG JCM CIP

History DSMZ <- J. Björkroth <- H. Niinivirta, AMKR18 CIP <- 2005, J. Koort, Helsinki Univ., Helsinki, Finland: strain AMKR18 JCM <-- DSM 15707 <-- J. Björkroth <-- H. Niinivirta AMKR18. CIP <- 2005, J. Koort, Helsinki Univ., Helsinki, Finland: strain AMKR18

Links

Paucilactobacillus oligofermentans AMKR18 is a microaerophile, Gram-positive, rod-shaped bacterium that was isolated from broiler leg.

Gram-positive rod-shaped microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 95022

DSM 15707,LMG22743,CCUG 52263,JCM 16175,CIP 109911,CIP 109078

@ref 20215

Last LPSN update 2026-05-29 08:26:27

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Paucilactobacillus

Species Paucilactobacillus oligofermentans

Full scientific name Paucilactobacillus oligofermentans (Koort et al. 2005) Zheng et al. 2020

Synonyms (1)

Lactobacillus oligofermentans

BacDive ID	Other strains from **Paucilactobacillus oligofermentans** (5)	Type strain
6630	P. oligofermentans 423, CCUG 52266, DSM 15704
6631	P. oligofermentans 557, DSM 15705, CCUG 52268
6632	P. oligofermentans GY 048, AMKR 26, CCUG 52264, DSM 15706
6634	P. oligofermentans 5-14, DSM 15708
6635	P. oligofermentans MARL 13, DSM 15709, CCUG 52265

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
121414	positive	rod-shaped
125438			90.5
125438	positive		94.912

Colony morphology

@ref	Incubation period	Hemolysis ability
59487	4 days
121414		0

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6073	MRS MEDIUM (DSMZ Medium 11)	Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
37874	MEDIUM 40- for Lactobacillus and Leuconostoc		Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
40113	MEDIUM 40- for Lactobacillus and Leuconostoc		Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
121414	CIP Medium 40	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
6073	positive	growth	25
37874	positive	growth	25
40113	positive	growth	30
59487	positive	growth	30
67770	positive	growth	25

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
6073	microaerophile
59487	anaerobe
125439	facultative anaerobe	95.435

Spore formation

@ref	Spore formation	Confidence
125438		91.858

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
121414	17632 ChEBI	nitrate	-	reduction
121414	16301 ChEBI	nitrite	-	reduction
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
121414	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
121414	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
121414	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
121414	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
121414	ornithine decarboxylase	-	4.1.1.17
121414	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
121414	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	acetoin degradation	100	3 of 3
66794	ppGpp biosynthesis	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	formaldehyde oxidation	100	3 of 3
66794	teichoic acid biosynthesis	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	palmitate biosynthesis	100	22 of 22
66794	pentose phosphate pathway	90.91	10 of 11
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	pyrimidine metabolism	84.44	38 of 45
66794	threonine metabolism	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	purine metabolism	78.72	74 of 94
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	butanoate fermentation	75	3 of 4
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	octane oxidation	66.67	2 of 3
66794	valine metabolism	66.67	6 of 9
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	NAD metabolism	66.67	12 of 18
66794	d-xylose degradation	63.64	7 of 11
66794	gluconeogenesis	62.5	5 of 8
66794	ketogluconate metabolism	62.5	5 of 8
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	phenylalanine metabolism	61.54	8 of 13
66794	cellulose degradation	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	glycogen metabolism	60	3 of 5
66794	degradation of pentoses	57.14	16 of 28
66794	photosynthesis	57.14	8 of 14
66794	propanol degradation	57.14	4 of 7
66794	glutamate and glutamine metabolism	57.14	16 of 28
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	serine metabolism	55.56	5 of 9
66794	non-pathway related	55.26	21 of 38
66794	glycolysis	52.94	9 of 17
66794	oxidative phosphorylation	52.75	48 of 91
66794	suberin monomers biosynthesis	50	1 of 2
66794	cysteine metabolism	50	9 of 18
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	sulfopterin metabolism	50	2 of 4
66794	acetate fermentation	50	2 of 4
66794	ribulose monophosphate pathway	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	cyclohexanol degradation	50	2 of 4
66794	isoleucine metabolism	50	4 of 8
66794	adipate degradation	50	1 of 2
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	lipid metabolism	48.39	15 of 31
66794	alanine metabolism	48.28	14 of 29
66794	flavin biosynthesis	46.67	7 of 15
66794	methionine metabolism	46.15	12 of 26
66794	urea cycle	46.15	6 of 13
66794	isoprenoid biosynthesis	46.15	12 of 26
66794	proline metabolism	45.45	5 of 11
66794	d-mannose degradation	44.44	4 of 9
66794	mevalonate metabolism	42.86	3 of 7
66794	glutathione metabolism	42.86	6 of 14
66794	tetrahydrofolate metabolism	42.86	6 of 14
66794	citric acid cycle	42.86	6 of 14
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	arachidonate biosynthesis	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	propionate fermentation	40	4 of 10
66794	methylglyoxal degradation	40	2 of 5
66794	O-antigen biosynthesis	40	2 of 5
66794	Entner Doudoroff pathway	40	4 of 10
66794	lysine metabolism	38.1	16 of 42
66794	degradation of sugar alcohols	37.5	6 of 16
66794	vitamin B6 metabolism	36.36	4 of 11
66794	tryptophan metabolism	34.21	13 of 38
66794	IAA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	arginine metabolism	33.33	8 of 24
66794	degradation of hexoses	33.33	6 of 18
66794	chorismate metabolism	33.33	3 of 9
66794	ascorbate metabolism	31.82	7 of 22
66794	leucine metabolism	30.77	4 of 13
66794	glycine metabolism	30	3 of 10
66794	starch degradation	30	3 of 10
66794	coenzyme M biosynthesis	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	reductive acetyl coenzyme A pathway	28.57	2 of 7
66794	lactate fermentation	25	1 of 4
66794	glycogen biosynthesis	25	1 of 4
66794	androgen and estrogen metabolism	25	4 of 16
66794	4-hydroxymandelate degradation	22.22	2 of 9
66794	nitrate assimilation	22.22	2 of 9
66794	tyrosine metabolism	21.43	3 of 14

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121414	-	-	-	-	-	+	+	-	-	-	+	-	-	+	-	+	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
6073	-	-	-	-	+	+	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
6073	-	-	-	-	+	+	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
121414	not determinedn.d.	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	+/-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Birds	#Chicken
#Host Body-Site	#Limb	#Leg

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
6073	broiler leg			Finland	FIN	Europe
59487	Broiler,late shelf life,modified atmosphere pack.	2001-01-01	Helsinki	Finland	FIN	Europe
67770	Modified-atmosphere-packaged poultry products
121414	MAP marinated broiler leg product			Finland	FIN	Europe	2001

Taxonmaps

69479

Global distribution of 16S sequence LC519865 (>99% sequence identity) for Paucilactobacillus from Microbeatlas

Aquatic Samples	3086
Soil Samples	1014
Animal Samples	4002
Plant Samples	304
Total Samples	8406

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6073	1	Risk group (German classification) According to TRBA 466
121414	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	Lactobacillus oligofermentans LMG 22743 genome assembly for Paucilactobacillus oligofermentans DSM 15707 = LMG 22743	complete	GCA_900015005	1423778.5	2901594697	1423778	97.79
67770	ASM143431v1 assembly for Paucilactobacillus oligofermentans DSM 15707 = LMG 22743	scaffold	GCA_001434315	1423778.4	2657245682	1423778	72.25

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6073	Lactobacillus oligofermentans strain AMKR18 16S ribosomal RNA gene, partial sequence	AY733084	1562		1423778
67770	Lactobacillus oligofermentans JCM 16175 gene for 16S rRNA, partial sequence	LC519865	1454		293371

GC content

@ref	GC-content (mol%)	Method
6073	35.3-39.9
67770	35.6	genome sequence analysis
67770	35.3-39.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lactobacillus oligofermentans LMG 22743 genome assembly for Paucilactobacillus oligofermentans DSM 15707 = LMG 22743
BV-BRC: 1423778.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	95.44	no
125439	gram_stain	BacteriaNetⓘ	positive	76.09	no
125439	motility	BacteriaNetⓘ	yes	42.33	no
125439	spore_formation	BacteriaNetⓘ	yes	46.36	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 LACOL
NCBI: GCA_900015005.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	94.91	no
125438	anaerobic	anaerobicⓘ	no	78.71	no
125438	aerobic	aerobicⓘ	no	93.74	no
125438	spore-forming	spore-formingⓘ	no	91.86	no
125438	thermophilic	thermophileⓘ	no	95.50	no
125438	flagellated	motile2+ⓘ	no	90.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Volatile profile and sensory properties of gluten-free bread with yellow pea flour and sourdough	Drakula S, Novotni D, Cukelj Mustac N, Voucko B, Krpan M, Vahcic N, Hruskar M, Curic D.	Eur Food Res Technol	10.1007/s00217-023-04439-y	2024
Genetics	Genomic Characterisation of Limosilactobacillus fermentum CRL2085 Unveiling Probiotic Traits for Application in Cattle Feed.	Ficoseco CMA, Chieffi D, Montemurro M, Bavaro A, Rizzello CG, Nader-Macias MEF, Fadda S, Fanelli F, Fusco V, Vignolo GM.	Environ Microbiol Rep	10.1111/1758-2229.70176	2025
	Assessment of the feed additive consisting of Enterococcus lactis DSM 7134 (Bonvital®) for sows for the renewal of its authorisation (Lactosan GmbH & Co.KG).	EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Villa RE, Azimonti G, Bonos E, Christensen H, Durjava M, Dusemund B, Gehring R, Glandorf B, Kouba M, Lopez-Alonso M, Marcon F, Nebbia C, Pechova A, Prieto-Maradona M, Rohe I, Theodoridou K, Cocconcelli PS, Anguita M, Galobart J, Innocenti ML, Brozzi R.	EFSA J	10.2903/j.efsa.2025.9353	2025
	Demonstration of phage inhibitory action against Clostridium perfringens LMG 11264 within a complex chicken cecal microbiota in vitro.	Wiese M, Klaassens ES, Hatt V, Kreikamp A, Baak ML, Heerikhuisen M, Van Der Vossen JMBM.	Front Antibiot	10.3389/frabi.2025.1599939	2025
	Influence of autochthonous Lactiplantibacillus plantarum strains on microbial safety and bioactive compounds in a fermented quinoa-based beverage as a non-dairy alternative.	Canaviri-Paz P, Gondo TF, Kjellstrom A, Mandoga T, Sithole J, Oscarsson E, Sandahl M, Hakansson A.	Food Chem X	10.1016/j.fochx.2025.102294	2025
	Microbiome-Based Products: Therapeutic Potential for Inflammatory Skin Diseases.	Rusanac A, Skibola Z, Matijasic M, Cipcic Paljetak H, Peric M.	Int J Mol Sci	10.3390/ijms26146745	2025
	Assessment of the feed additive consisting of Enterococcus lactisDSM 7134 (Bonvital®) for chickens reared for laying and minor poultry species other than those used for laying for the renewal of its authorisation (Lactosan GmbH & Co.KG).	EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Bampidis V, Azimonti G, Bastos ML, Christensen H, Durjava M, Dusemund B, Kouba M, Lopez-Alonso M, Lopez Puente S, Marcon F, Mayo B, Pechova A, Petkova M, Ramos F, Villa RE, Woutersen R, Alija-Novo N, Anguita M, Brozzi R.	EFSA J	10.2903/j.efsa.2023.8351	2023
	Transcriptomic time-series analysis of cold- and heat-shock response in psychrotrophic lactic acid bacteria.	Duru IC, Ylinen A, Belanov S, Pulido AA, Paulin L, Auvinen P.	BMC Genomics	10.1186/s12864-020-07338-8	2021
	Assessment of the feed additive consisting of Lacticaseibacillus paracasei (formerly Lactobacillus paracasei)DSM 16245 for all animal species for the renewal of its authorisation (Lactosan GmbH & Co KG).	EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Bampidis V, Azimonti G, Bastos ML, Christensen H, Dusemund B, Fasmon Durjava M, Kouba M, Lopez-Alonso M, Lopez Puente S, Marcon F, Mayo B, Pechova A, Petkova M, Ramos F, Sanz Y, Villa RE, Woutersen R, Saarela M, Galobart J, Gregoretti L, Revez J, Vettori MV, Brozzi R.	EFSA J	10.2903/j.efsa.2021.6902	2021
	In vitro investigations on interference of selected probiotic candidates with Campylobacter jejuni adhesion and invasion of primary chicken derived cecal and Caco-2 cells.	Willer T, Han Z, Pielsticker C, Rautenschlein S.	Gut Pathog	10.1186/s13099-024-00623-x	2024
	The Role of Nutraceuticals and Probiotics in Addition to Lifestyle Intervention in the Management of Childhood Obesity-Part 1: Metabolic Changes.	Street ME, Casadei F, Di Bari ER, Ferraboschi F, Montani AG, Shulhai AM, Esposito S.	Nutrients	10.3390/nu17101630	2025
	Characterization of the Biological Activities of a New Polyphenol-Rich Extract from Cinnamon Bark on a Probiotic Consortium and Its Action after Enzymatic and Microbial Fermentation on Colorectal Cell Lines.	De Giani A, Pagliari S, Zampolli J, Forcella M, Fusi P, Bruni I, Campone L, Di Gennaro P.	Foods	10.3390/foods11203202	2022
	Diversion Colitis and Probiotic Stimulation: Effects of Bowel Stimulation Prior to Ileostomy Closure.	Rodriguez-Padilla A, Morales-Martin G, Perez-Quintero R, Rada-Morgades R, Gomez-Salgado J, Ruiz-Frutos C.	Front Med (Lausanne)	10.3389/fmed.2021.654573	2021
	Safety and efficacy of Bonvital^® (Enterococcus faeciumDSM 7134) as a feed additive for laying hens.	EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP), Bampidis V, Azimonti G, Bastos M, Christensen H, Dusemund B, Kouba M, Fasmon Durjava M, Lopez-Alonso M, Lopez Puente S, Marcon F, Mayo B, Pechova A, Petkova M, Ramos F, Sanz Y, Villa R, Woutersen R, Dierick N, Martelli G, Anguita M, Galobart J, Revez J, Brozzi R.	EFSA J	10.2903/j.efsa.2020.6277	2020
Metabolism	Selected nondigestible carbohydrates and prebiotics support the growth of probiotic fish bacteria mono-cultures in vitro.	Rurangwa E, Laranja JL, Van Houdt R, Delaedt Y, Geraylou Z, Van de Wiele T, Van Loo J, Van Craeyveld V, Courtin CM, Delcour JA, Ollevier F.	J Appl Microbiol	10.1111/j.1365-2672.2008.04034.x	2009
	A randomized double-blind placebo controlled pilot study of probiotics in adolescents with severe obesity.	Verma A, Nelson MT, DePaolo WR, Hampe C, Roth CL.	J Diabetes Metab Disord	10.1007/s40200-021-00855-7	2021
	A review of potential microbiome-gut-brain axis mediated neurocognitive conditions in persons living with HIV.	Rich S, Klann E, Bryant V, Richards V, Wijayabahu A, Bryant K, Mai V, Cook R.	Brain Behav Immun Health	10.1016/j.bbih.2020.100168	2020
Metabolism	Structural Identity of Galactooligosaccharide Molecules Selectively Utilized by Single Cultures of Probiotic Bacterial Strains.	Boger M, van Leeuwen SS, Lammerts van Bueren A, Dijkhuizen L.	J Agric Food Chem	10.1021/acs.jafc.9b05968	2019
Pathogenicity	Probiotics May Have Beneficial Effects in Parkinson's Disease: In vitro Evidence.	Magistrelli L, Amoruso A, Mogna L, Graziano T, Cantello R, Pane M, Comi C.	Front Immunol	10.3389/fimmu.2019.00969	2019
	Feeding Pre-weaned Calves With Waste Milk Containing Antibiotic Residues Is Related to a Higher Incidence of Diarrhea and Alterations in the Fecal Microbiota.	Penati M, Sala G, Biscarini F, Boccardo A, Bronzo V, Castiglioni B, Cremonesi P, Moroni P, Pravettoni D, Addis MF.	Front Vet Sci	10.3389/fvets.2021.650150	2021
Genetics	Genomic characterization of Lactobacillus fermentum DSM 20052.	Brandt K, Nethery MA, O'Flaherty S, Barrangou R.	BMC Genomics	10.1186/s12864-020-6740-8	2020
	Multistrain Probiotic Increases the Gut Microbiota Diversity in Obese Pregnant Women: Results from a Randomized, Double-Blind Placebo-Controlled Study.	Halkjaer SI, de Knegt VE, Lo B, Nilas L, Cortes D, Pedersen AE, Mirsepasi-Lauridsen HC, Andersen LO, Nielsen HV, Stensvold CR, Johannesen TB, Kallemose T, Krogfelt KA, Petersen AM.	Curr Dev Nutr	10.1093/cdn/nzaa095	2020
Metabolism	Gene expression in the chicken caecum is dependent on microbiota composition.	Volf J, Polansky O, Sekelova Z, Velge P, Schouler C, Kaspers B, Rychlik I.	Vet Res	10.1186/s13567-017-0493-7	2017
	In vitro and in vivo antagonistic activity of new probiotic culture against Clostridium difficile and Clostridium perfringens.	Golic N, Veljovic K, Popovic N, Djokic J, Strahinic I, Mrvaljevic I, Terzic-Vidojevic A.	BMC Microbiol	10.1186/s12866-017-1015-5	2017
Pathogenicity	Prolonged antibiotic treatment induces a diabetogenic intestinal microbiome that accelerates diabetes in NOD mice.	Brown K, Godovannyi A, Ma C, Zhang Y, Ahmadi-Vand Z, Dai C, Gorzelak MA, Chan Y, Chan JM, Lochner A, Dutz JP, Vallance BA, Gibson DL.	ISME J	10.1038/ismej.2015.114	2016
	Gut microbiota composition before infection determines the Salmonella super- and low-shedder phenotypes in chicken.	Kempf F, Menanteau P, Rychlik I, Kubasova T, Trotereau J, Virlogeux-Payant I, Schaeffer S, Schouler C, Drumo R, Guitton E, Velge P.	Microb Biotechnol	10.1111/1751-7915.13621	2020
Metabolism	Two beta-galactosidases from the human isolate Bifidobacterium breve DSM 20213: molecular cloning and expression, biochemical characterization and synthesis of galacto-oligosaccharides.	Arreola SL, Intanon M, Suljic J, Kittl R, Pham NH, Kosma P, Haltrich D, Nguyen TH.	PLoS One	10.1371/journal.pone.0104056	2014
Transcriptome	Lactobacillus oligofermentans glucose, ribose and xylose transcriptomes show higher similarity between glucose and xylose catabolism-induced responses in the early exponential growth phase.	Andreevskaya M, Johansson P, Jaaskelainen E, Ramo T, Ritari J, Paulin L, Bjorkroth J, Auvinen P	BMC Genomics	10.1186/s12864-016-2840-x	2016
Phylogeny	Lactobacillus alvi sp. nov., isolated from the intestinal tract of chicken.	Kim HJ, Eom SJ, Park SJ, Cha CJ, Kim GB.	FEMS Microbiol Lett	10.1111/j.1574-6968.2011.02361.x	2011
Phylogeny	Lactobacillus yonginensis sp. nov., a lactic acid bacterium with ginsenoside converting activity isolated from Kimchi.	Yi EJ, Yang JE, Lee JM, Park Y, Park SY, Shin HS, Kook M, Yi TH.	Int J Syst Evol Microbiol	10.1099/ijs.0.045799-0	2013
Phylogeny	Saccharibacillus kuerlensis sp. nov., isolated from a desert soil.	Yang SY, Liu H, Liu R, Zhang KY, Lai R.	Int J Syst Evol Microbiol	10.1099/ijs.0.005199-0	2009
Phylogeny	Lactobacillus mudanjiangensis sp. nov., Lactobacillus songhuajiangensis sp. nov. and Lactobacillus nenjiangensis sp. nov., isolated from Chinese traditional pickle and sourdough.	Gu CT, Li CY, Yang LJ, Huo GC	Int J Syst Evol Microbiol	10.1099/ijs.0.054296-0	2013
Phylogeny	Lactobacillus hokkaidonensis sp. nov., isolated from subarctic timothy grass (Phleum pratense L.) silage.	Tohno M, Kitahara M, Uegaki R, Irisawa T, Ohkuma M, Tajima K	Int J Syst Evol Microbiol	10.1099/ijs.0.047027-0	2012
Phylogeny	Lactobacillus oligofermentans sp. nov., associated with spoilage of modified-atmosphere-packaged poultry products.	Koort J, Murros A, Coenye T, Eerola S, Vandamme P, Sukura A, Bjorkroth J	Appl Environ Microbiol	10.1128/AEM.71.8.4400-4406.2005	2005

References

#6073	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15707
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#37874	; Curators of the CIP;
#40113	; Curators of the CIP;
#59487	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 52263
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121414	Collection of Institut Pasteur ; Curators of the CIP; CIP 109078
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paucilactobacillus oligofermentans (DSM 15707, CIP 109911, JCM 16175)

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Genome browser: GCA_900015005

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