Name: Lactiplantibacillus argentoratensis DSM 16365
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6626

Type strain:

Species: Lactiplantibacillus argentoratensis

Culture col. no.: DSM 16365, CIP 108320, CCUG 50787, DKO 22, JCM 16169, BCRC 17638, NBRC 106468, NRIC 0653

Strain history: CIP <- 2004, F. Bringel, CNRS-Univ. Louis Pasteur of Strasbourg, France: strain DKO22 <- D.K. Olukoya, Lagos, Nigeria

NCBI tax ID(s): 1423831 (strain), 271881 (species)

SI-ID 3348

LMG 9205, NCIMB 12120, CCUG 50787, CIP 108320, DSM 16365, BCRC 17638, CCRC 17638, VTT E-093129, JCM 16169

Special Collections

Section

When using BacDive for research please cite our paper

Lactiplantibacillus argentoratensis DSM 16365 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from fermented cassava roots .

Gram-positive
rod-shaped
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Lactiplantibacillus*
	Species	**Lactiplantibacillus argentoratensis**
	Full Scientific Name (LPSN)	Lactiplantibacillus argentoratensis (Bringel et al. 2005) Liu and Gu 2020

	Synonym	Lactobacillus argentoratensis
	Synonym	Lactobacillus plantarum subsp. argentoratensis
	Synonym	Lactiplantibacillus plantarum subsp. argentoratensis

Information on morphological and physiological properties Morphology

[Ref.: #116494]	Gram stain	positive
[Ref.: #125438]	Gram stain	positive Confidence in %93.216

[Ref.: #116494]	Cell shape	rod-shaped

[Ref.: #116494]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6403]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #6403]

Culture medium growth

[Ref.: #6403]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6403]

Culture medium composition

expand / minimize

[Ref.: #38269]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #38269]

Culture medium growth

[Ref.: #38269]

Culture medium composition

expand / minimize

[Ref.: #116494]

Culture medium

CIP Medium 40

[Ref.: #116494]

Culture medium growth

[Ref.: #116494]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6403]		growth	30 °C
[Ref.: #38269]		growth	30 °C
[Ref.: #58997]		growth	37 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #116494]		growth	15-37 °C
[Ref.: #116494]	negative	growth	10 °C
[Ref.: #116494]	negative	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6403]	Oxygen tolerance	microaerophile
[Ref.: #58997]	Oxygen tolerance	anaerobe
[Ref.: #116494]	Oxygen tolerance	facultative anaerobe
[Ref.: #125439]	Oxygen tolerance	microaerophile Confidence in %91.6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #116494]	nitrate ChEBI	-	reduction
[Ref.: #116494]	nitrate ChEBI	+	respiration
[Ref.: #116494]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #116494]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #116494]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #116494]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116494]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #116494]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116494]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #116494]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #6403]	15145	-	-	-	-	-	+	-	-	-	-	+	+	+	+	-	-	-	-	+	+	-	-	+	+	+	+	+	+	+	+	+	+	+	-	-	+	-	-	-	+	-	-	-	-	-	-	-	+	-	-
[Ref.: #6403]	15144	-	-	-	-	-	+	-	-	-	-	+	+	+	+	-	-	-	-	+	+	-	-	+	+	+	+	+	+	+	+	+	+	+	-	-	+	-	-	-	+	-	-	-	-	-	-	-	+	-	-
[Ref.: #116494]	11262	not determinedn.d.	-	-	-	-	+	-	-	-	-	+	+	+	+	-	-	-	-	+	+	-	-	+	+	+	+	+	+	+	+	+	+	+	-	-	+	-	-	-	+	-	-	-	-	-	-	-	+	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116494]	11085	-	-	-	-	-	+	-	-	-	-	+	+	+	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6403]	Sample type/isolated from	fermented cassava roots (fufu)
[Ref.: #6403]	Country	Nigeria
[Ref.: #6403]	Country ISO 3 Code	NGA
[Ref.: #6403]	Continent	Africa

[Ref.: #58997]	Sample type/isolated from	Sour cassava (fufu)
[Ref.: #58997]	Country	Nigeria
[Ref.: #58997]	Country ISO 3 Code	NGA
[Ref.: #58997]	Continent	Africa

[Ref.: #67770]	Sample type/isolated from	Vegetable matrices

[Ref.: #116494]	Sample type/isolated from	Plant, Root of fermented manioc
[Ref.: #116494]	Geographic location (country and/or sea, region)	Lagos
[Ref.: #116494]	Country	Nigeria
[Ref.: #116494]	Country ISO 3 Code	NGA
[Ref.: #116494]	Continent	Africa
[Ref.: #116494]	Isolation date	1992
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	-
#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC258153 (>99% sequence identity) for Lactobacillaceae from Microbeatlas

Aquatic Samples	4479
Soil Samples	2696
Animal Samples	29069
Plant Samples	2393
Total Samples	38637

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6403]	Pathogenicity (human)	yes, in single cases
[Ref.: #6403]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116494]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus plantarum subsp. argentoratensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 16169	LC258153	1432	GenBank ENA	271881 tax ID
[Ref.: #6403]	Lactobacillus plantarum subsp. argentoratensis partial 16S rRNA gene, type strain DK0 22T	AJ640078	1517	GenBank ENA	271881 tax ID
[Ref.: #124043]	Lactobacillus plantarum subsp. argentoratensis gene for 16S rRNA, partial sequence, strain: NBRC 106468.	AB626061	1492	GenBank ENA	271881 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactiplantibacillus argentoratensis DSM 16365	GCA_001435215	scaffold	GenBank ENA	1423831 tax ID
[Ref.: #66792]	Lactiplantibacillus argentoratensis NBRC 106468	GCA_007991855	contig	GenBank ENA	271881 tax ID	*
[Ref.: #66792]	Lactobacillus plantarum subsp. argentoratensis DSM 16365	1423831.3	wgs	PATRIC	1423831 tax ID	*
[Ref.: #66792]	Lactobacillus plantarum subsp. argentoratensis strain DSM 16365	271881.5	complete	PATRIC	271881 tax ID	*
[Ref.: #66792]	Lactobacillus plantarum subsp. argentoratensis strain NBRC 106468	271881.7	wgs	PATRIC	271881 tax ID	*
[Ref.: #66792]	Lactiplantibacillus plantarum argentoratensis DSM 16365	2700989149	draft	JGI IMG/M	1423831 tax ID	*

[Ref.: #67770]

GC-content

45.3 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactiplantibacillus argentoratensis DSM 16365 NCBI: GCA_003641165.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	93.216	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	86.52	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	97.033	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	81.554	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	97	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	89	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lactiplantibacillus argentoratensis DSM 16365 NCBI: GCA_003641165
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	57.3
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	54.8
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	84.3
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	microaerophile	91.6

Availability in culture collections External links

[Ref.: #6403]

Culture collection no.

DSM 16365, CIP 108320, CCUG 50787, DKO 22, JCM 16169, BCRC 17638, NBRC 106468, NRIC 0653

[Ref.: #76100]

SI-ID 3348

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proposal of Lactobacillus kosoi Chiou et al. 2018 as a later heterotypic synonym of Lactobacillus micheneri McFrederick et al. 2018, elevation of Lactobacillus plantarum subsp. argentoratensis to the species level as Lactobacillus argentoratensis sp. nov., and Lactobacillus zhaodongensis sp. nov., isolated from traditional Chinese pickle and the intestinal tract of a honey bee (Apis mellifera).	Li TT, Liu DD, Fu ML, Gu CT	Int J Syst Evol Microbiol	10.1099/ijsem.0.004141	2020	*

References

#6403

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16365

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#38269 ; Curators of the CIP;
#58997 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 50787

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#76100

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID3348.1 )

#116494 Collection of Institut Pasteur ; Curators of the CIP; CIP 108320

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

Change proposal

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