Name: Liquorilactobacillus satsumensis DSM 16230
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6621

Type strain:

Species: Liquorilactobacillus satsumensis

Culture col. no.: DSM 16230, NRIC 0604, CCUG 52399, JCM 12392, CIP 109882, NCIMB 14549

Strain history: CIP <- 2008, JCM <- A.Endo, Agricult. Univ. Tokyo, Japan <- NRIC, Sochu mash: strain 12392

NCBI tax ID(s): 259059 (species)

SI-ID 130993

DSM 16230, JCM 12392, CCUG 52399, CIP 109882

Section

Liquorilactobacillus satsumensis DSM 16230 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from shochu mash.

Gram-positive
motile
rod-shaped
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Liquorilactobacillus*
	Species	**Liquorilactobacillus satsumensis**
	Full Scientific Name (LPSN)	Liquorilactobacillus satsumensis (Endo and Okada 2005) Zheng et al. 2020

Synonym

Lactobacillus satsumensis

Information on morphological and physiological properties Morphology

[Ref.: #31301]	Gram stain	positive
[Ref.: #122494]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #31301]	Cell length	1.25 µm

[Ref.: #31301]	Cell width	0.7 µm

[Ref.: #31301]	Cell shape	rod-shaped
[Ref.: #122494]	Cell shape	rod-shaped

[Ref.: #31301]	Motility	yes
[Ref.: #122494]	Motility	no

[Ref.: #59539]

Incubation period

3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6344]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #6344]

Culture medium growth

[Ref.: #6344]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6344]

Culture medium composition

expand / minimize

[Ref.: #37743]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #37743]

Culture medium growth

[Ref.: #37743]

Culture medium composition

expand / minimize

[Ref.: #122494]

Culture medium

CIP Medium 40

[Ref.: #122494]

Culture medium growth

[Ref.: #122494]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #6344]	growth	30 °C
[Ref.: #31301]	growth	15-45 °C
[Ref.: #31301]	optimum	30 °C
[Ref.: #37743]	growth	37 °C
[Ref.: #59539]	growth	30-37 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #122494]	growth	15-45 °C

[Ref.: #6344]	Temperature range	mesophilic
[Ref.: #31301]	Temperature range	mesophilic
[Ref.: #37743]	Temperature range	mesophilic
[Ref.: #59539]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6344]	Oxygen tolerance	microaerophile
[Ref.: #31301]	Oxygen tolerance	facultative anaerobe
[Ref.: #59539]	Oxygen tolerance	anaerobe
[Ref.: #59539]	Oxygen tolerance	microaerophile
[Ref.: #122494]	Oxygen tolerance	facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %97
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.991

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31301]		NaCl		growth	<5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31301]	fructose ChEBI	+	carbon source
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31301]	galactose ChEBI	+	carbon source
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31301]	glucose ChEBI	+	carbon source
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31301]	mannitol ChEBI	+	carbon source
[Ref.: #31301]	mannose ChEBI	+	carbon source
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122494]	nitrate ChEBI	-	reduction
[Ref.: #122494]	nitrate ChEBI	+	respiration
[Ref.: #122494]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31301]	salicin ChEBI	+	carbon source
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31301]	sucrose ChEBI	+	carbon source
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31301]	trehalose ChEBI	+	carbon source
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #122494]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #122494]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122494]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #122494]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122494]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #122494]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #6344]	14341	-	-	-	-	-	-	-	-	-	-	-	+	+	+	+	-	-	-	+	-	-	-	+	-	+	+	+	-	-	-	-	+	+	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-
[Ref.: #122494]	11683	not determinedn.d.	-	-	-	-	-	-	-	-	-	+/-	+	+	+/-	+	+/-	-	-	+	-	-	+/-	+/-	+/-	-	+	+	-	-	-	-	+	+	-	-	-	-	-	-	+/-	+	-	+	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122494]	12188	-	+	+	-	-	+	-	-	-	-	+	+	-	-	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6344]	Sample type/isolated from	shochu mash
[Ref.: #6344]	Geographic location (country and/or sea, region)	Miyazaki pref.
[Ref.: #6344]	Country	Japan
[Ref.: #6344]	Country ISO 3 Code	JPN
[Ref.: #6344]	Continent	Asia

[Ref.: #59539]	Sample type/isolated from	Shochu mash
[Ref.: #59539]	Country	Japan
[Ref.: #59539]	Country ISO 3 Code	JPN
[Ref.: #59539]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Mashes of shouchu (traditional Japanese distilled spirits)

[Ref.: #122494]	Sample type/isolated from	Food, Fermented rice
[Ref.: #122494]	Isolation date	2005
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Fermented
#Engineered	#Food production	#Beverage

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC311746 (>99% sequence identity) for Liquorilactobacillus satsumensis from Microbeatlas

Aquatic Samples	70
Soil Samples	88
Animal Samples	3288
Plant Samples	120
Total Samples	3566

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6344]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122494]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6344]	Lactobacillus satsumensis gene for 16S rRNA, partial sequence, strain:NRIC 0604	AB154519	1556	ENA	259059 tax ID
[Ref.: #67770]	Lactobacillus satsumensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 12392	LC311746	1497	ENA	259059 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Liquorilactobacillus satsumensis DSM 16230 = JCM 12392	GCA_001435195	scaffold	GenBank	1423801 tax ID
[Ref.: #67770]	Liquorilactobacillus satsumensis DSM 16230 = JCM 12392	GCA_001312045	contig	GenBank	1423801 tax ID
[Ref.: #66792]	Lactobacillus satsumensis DSM 16230 = JCM 12392	1423801.4	wgs	PATRIC	1423801 tax ID	*
[Ref.: #66792]	Lactobacillus satsumensis DSM 16230 = JCM 12392	1423801.3	wgs	PATRIC	1423801 tax ID	*
[Ref.: #66792]	Liquorilactobacillus satsumensis JCM 12392	2728369706	draft	JGI IMG/M	1423801 tax ID	*
[Ref.: #66792]	Liquorilactobacillus satsumensis DSM 16230	2671180250	draft	JGI IMG/M	1423801 tax ID	*

[Ref.: #6344]	GC-content	40.2 mol%
[Ref.: #31301]	GC-content	40 mol%
[Ref.: #67770]	GC-content	39.9 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	40 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Liquorilactobacillus satsumensis DSM 16230 = JCM 12392 DSM 16230 NCBI: GCA_001435195.1
[Ref.: #69481]	spore-forming	no	97	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillus satsumensis DSM 16230 = JCM 12392 PATRIC: 1423801.4
[Ref.: #69480]	motile	yes	68.988	yes
[Ref.: #69480]	gram-positive	yes	91.53	yes
[Ref.: #69480]	anaerobic	no	87.423	no
[Ref.: #69480]	halophile	yes	59.434	no
[Ref.: #69480]	spore-forming	no	89.023	no
[Ref.: #69480]	thermophile	no	98.528	yes
[Ref.: #69480]	glucose-util	yes	87.375	yes
[Ref.: #69480]	aerobic	no	95.605	yes
[Ref.: #69480]	flagellated	no	82.451	no
[Ref.: #69480]	glucose-ferment	yes	85.836	no

Availability in culture collections External links

[Ref.: #6344]

Culture collection no.

DSM 16230, NRIC 0604, CCUG 52399, JCM 12392, CIP 109882, NCIMB 14549

[Ref.: #76095]

SI-ID 130993

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus sucicola sp. nov., a motile lactic acid bacterium isolated from oak tree (Quercus sp.) sap.	Irisawa T, Okada S	Int J Syst Evol Microbiol	10.1099/ijs.0.006478-0	2009	*
Phylogeny	Lactobacillus aquaticus sp. nov., isolated from a Korean freshwater pond.	Manes-Lazaro R, Song J, Pardo I, Cho JC, Ferrer S	Int J Syst Evol Microbiol	10.1099/ijs.0.008276-0	2009	*
Phylogeny	Lactobacillus oeni sp. nov., from wine.	Manes-Lazaro R, Ferrer S, Rossello-Mora R, Pardo I	Int J Syst Evol Microbiol	10.1099/ijs.0.007567-0	2009	*
Phylogeny	Lactobacillus ceti sp. nov., isolated from beaked whales (Ziphius cavirostris).	Vela AI, Fernandez A, Espinosa de los Monteros A, Goyache J, Herraez P, Tames B, Cruz F, Dominguez L, Fernandez-Garayzabal JF	Int J Syst Evol Microbiol	10.1099/ijs.0.65372-0	2008	*
Phylogeny	Lactobacillus satsumensis sp. nov., isolated from mashes of shochu, a traditional Japanese distilled spirit made from fermented rice and other starchy materials.	Endo A, Okada S	Int J Syst Evol Microbiol	10.1099/ijs.0.63248-0	2005	*

References

#6344

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16230

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31301

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27619 (see below)

#37743 ; Curators of the CIP;
#59539 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 52399

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76095

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID130993.1 )

#122494 Collection of Institut Pasteur ; Curators of the CIP; CIP 109882

#27619

IJSEM 83 2005 ( DOI 10.1099/ijs.0.63248-0 , PubMed 15653857 )

* These data were automatically processed and therefore are not curated

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Liquorilactobacillus satsumensis DSM 16230 = JCM 12392 DSM 16230

Lactobacillus satsumensis DSM 16230 = JCM 12392

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