Name: Lactobacillus kalixensis Kx127A2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6615

Type strain:

Species: Lactobacillus kalixensis

Strain Designation: Kx127A2

Culture col. no.: DSM 16043, CCUG 48459, CIP 109909, LMG 22115, JCM 15954

Strain history: CIP <- 2008, DSMZ <- S. Roos, Uppsala Univ., Uppsala, Sweden: strain Kx127A2

NCBI tax ID(s): 1423763 (strain), 227944 (species)

SI-ID 129729

LMG 22115, CCUG 48459, DSM 16043, JCM 15954, CIP 109909

Other strains from Lactobacillus kalixensis

L. kalixensis Kx146C2, DSM 16044, CCUG 48458, ...

Section

Lactobacillus kalixensis Kx127A2 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from gastric biopsies, human stomach mucosa.

Gram-positive
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Lactobacillus*
	Species	**Lactobacillus kalixensis**
	Full Scientific Name (LPSN)	Lactobacillus kalixensis Roos et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31225]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #31225]	Cell length	5.75 µm

[Ref.: #31225]	Cell width	1 µm

[Ref.: #31225]	Cell shape	rod-shaped

[Ref.: #31225]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %93.427

[Ref.: #31225]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6159]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #6159]

Culture medium growth

[Ref.: #6159]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6159]

Culture medium composition

expand / minimize

[Ref.: #37872]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #37872]

Culture medium growth

[Ref.: #37872]

Culture medium composition

expand / minimize

[Ref.: #120373]

Culture medium

CIP Medium 40

[Ref.: #120373]

Culture medium growth

[Ref.: #120373]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #6159]	growth	37 °C
[Ref.: #31225]	growth	25-45 °C
[Ref.: #31225]	optimum	35 °C
[Ref.: #37872]	growth	37 °C
[Ref.: #58174]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #6159]	Temperature range	mesophilic
[Ref.: #31225]	Temperature range	mesophilic
[Ref.: #37872]	Temperature range	mesophilic
[Ref.: #58174]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6159]	Oxygen tolerance	anaerobe
[Ref.: #31225]	Oxygen tolerance	anaerobe
[Ref.: #58174]	Oxygen tolerance	anaerobe

[Ref.: #31225]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.967

[Ref.: #6159]	Murein short key	A11.31
[Ref.: #6159]	Murein types	A4alpha L-Lys-D-Asp

[Ref.: #31225]

Observation

aggregates in chains

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31225]	cellobiose ChEBI	+	carbon source
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31225]	esculin ChEBI	+	hydrolysis
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31225]	fructose ChEBI	+	carbon source
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31225]	galactose ChEBI	+	carbon source
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31225]	glucose ChEBI	+	carbon source
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31225]	lactose ChEBI	+	carbon source
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31225]	maltose ChEBI	+	carbon source
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31225]	mannitol ChEBI	+	carbon source
[Ref.: #31225]	mannose ChEBI	+	carbon source
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31225]	melibiose ChEBI	+	carbon source
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31225]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31225]	raffinose ChEBI	+	carbon source
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31225]	salicin ChEBI	+	carbon source
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31225]	sucrose ChEBI	+	carbon source
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31225]	trehalose ChEBI	+	carbon source
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #120373]	11688	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6159]	Sample type/isolated from	gastric biopsies, human stomach mucosa
[Ref.: #6159]	Geographic location (country and/or sea, region)	Kalix
[Ref.: #6159]	Country	Sweden
[Ref.: #6159]	Country ISO 3 Code	SWE
[Ref.: #6159]	Continent	Europe

[Ref.: #58174]	Sample type/isolated from	Human stomach biopsy,mucosa of healthy individual
[Ref.: #58174]	Geographic location (country and/or sea, region)	Kalix
[Ref.: #58174]	Country	Sweden
[Ref.: #58174]	Country ISO 3 Code	SWE
[Ref.: #58174]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Human stomach mucosa

[Ref.: #120373]	Sample type/isolated from	Human, Stomach gastric biopsies mucosa
[Ref.: #120373]	Country	Sweden
[Ref.: #120373]	Country ISO 3 Code	SWE
[Ref.: #120373]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Patient	#Biopsy
#Host	#Human	-
#Host Body-Site	#Gastrointestinal tract	#Stomach

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC483553 (>99% sequence identity) for Lactobacillus kalixensis subclade from Microbeatlas

Aquatic Samples	24
Soil Samples	11
Animal Samples	1372
Plant Samples	12
Total Samples	1419

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6159]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120373]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31225]	Lactobacillus kalixensis 16S ribosomal RNA gene, complete sequence	AY253657	1555	GenBank	227944 tax ID
[Ref.: #67770]	Lactobacillus kalixensis gene for 16S ribosomal RNA, partial sequence	LC483553	1506	ENA	227944 tax ID
[Ref.: #20218]	Lactobacillus kalixensis partial 16S rRNA gene, type strain CCUG 48459T	FR683096	1513	ENA	227944 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus kalixensis DSM 16043	GCA_001434335	scaffold	GenBank	1423763 tax ID
[Ref.: #66792]	Lactobacillus kalixensis DSM 16043	1423763.3	wgs	PATRIC	1423763 tax ID	*
[Ref.: #66792]	Lactobacillus kalixensis DSM 16043	2660238416	draft	JGI IMG/M	1423763 tax ID	*

[Ref.: #6159]	GC-content	35.5 mol%
[Ref.: #67770]	GC-content	36.1 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	35.5 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lactobacillus kalixensis DSM 16043 DSM 16043 NCBI: GCA_001434335.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillus kalixensis DSM 16043 PATRIC: 1423763.3
[Ref.: #69480]	motile	no	94.89	yes
[Ref.: #69480]	gram-positive	yes	95.778	yes
[Ref.: #69480]	anaerobic	yes	70.242	yes
[Ref.: #69480]	halophile	yes	82.896	no
[Ref.: #69480]	spore-forming	no	96.016	yes
[Ref.: #69480]	glucose-util	yes	93.492	yes
[Ref.: #69480]	thermophile	no	99.29	yes
[Ref.: #69480]	aerobic	no	97.943	yes
[Ref.: #69480]	flagellated	no	97.985	no
[Ref.: #69480]	glucose-ferment	yes	92.473	no

Availability in culture collections External links

[Ref.: #6159]

Culture collection no.

DSM 16043, CCUG 48459, CIP 109909, LMG 22115, JCM 15954

[Ref.: #76089]

SI-ID 129729

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus gastricus sp. nov., Lactobacillus antri sp. nov., Lactobacillus kalixensis sp. nov. and Lactobacillus ultunensis sp. nov., isolated from human stomach mucosa.	Roos S, Engstrand L, Jonsson H	Int J Syst Evol Microbiol	10.1099/ijs.0.63083-0	2005	*

References

#6159

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16043

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31225

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27551 (see below)

#37872 ; Curators of the CIP;
#58174 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 48459

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76089

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID129729.1 )

#120373 Collection of Institut Pasteur ; Curators of the CIP; CIP 109909

#27551

IJSEM 77 2005 ( DOI 10.1099/ijs.0.63083-0 , PubMed 15653856 )

* These data were automatically processed and therefore are not curated

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Lactobacillus kalixensis DSM 16043 DSM 16043

Lactobacillus kalixensis DSM 16043

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