Limosilactobacillus antri (DSM 16041, CCUG 48456, CIP 109960)

Name: Limosilactobacillus antri (DSM 16041, CCUG 48456, CIP 109960)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6613

Type strain

Strain Designation Kx146A4

Culture col. no. DSM 16041 CCUG 48456 CIP 109960 LMG 22111 Kx146A4 1 more

NCBI tax ID(s) 525309 227943

Special Collections DSMZ CCUG JCM CIP Literature strains

History <- S. Roos; Kx146A4 LMG 22111 <-- S. Roos Kx146A4. CIP <- 2009, DSMZ <- S. Roos, Univ. of Agricultural Sciences Swedish, Uppsala, Sweden: strain Kx146A4

Links

Limosilactobacillus antri Kx146A4 is an anaerobe, mesophilic, Gram-positive prokaryote that was isolated from gastric biopsies, human stomach mucosa.

Gram-positive rod-shaped anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 129725

LMG 22111,CCUG 48456,DSM 16041,JCM 15950,CIP 109960

@ref 20215

Last LPSN update 2025-12-16 09:48:22

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Limosilactobacillus

Species Limosilactobacillus antri

Full scientific name Limosilactobacillus antri (Roos et al. 2005) Zheng et al. 2020

Synonyms (1)

Lactobacillus antri

BacDive ID	Other strains from **Limosilactobacillus antri** (3)	Type strain
6614	L. antri Kx329A2, DSM 16042, CCUG 48457, LMG 22112
169495	L. antri H6, PM1-PG.8-col-4-25.04, DSM 106038
169496	L. antri Cla-SR-46, DSM 110087

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
31225	positive	1.6 µm	1 µm	rod-shaped
116417	positive			rod-shaped
125438					92
125438	positive				93.311

Pigmentation

31225

Productionno

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6157	MRS MEDIUM (DSMZ Medium 11)	Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
37887	MEDIUM 40- for Lactobacillus and Leuconostoc		Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
116417	CIP Medium 40	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6157	positive	growth	37	mesophilic
31225	positive	growth	25-45
31225	positive	optimum	35	mesophilic
37887	positive	growth	37	mesophilic
58172	positive	growth	37	mesophilic
67770	positive	growth	37	mesophilic
116417	positive	growth	15-45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
6157	anaerobe
6157	microaerophile
31225	anaerobe
58172	anaerobe
116417	facultative anaerobe
125439	anaerobe	99.6

Spore formation

@ref	Spore formation	Confidence
31225
125439		98.1

Murein

@ref	Murein short key	Type
6157	A11.31	A4alpha L-Lys-D-Asp

Observation

31225

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
31225	22599 ChEBI	arabinose	+	carbon source
31225	4853 ChEBI	esculin	+	hydrolysis
31225	28757 ChEBI	fructose	+	carbon source
31225	28260 ChEBI	galactose	+	carbon source
31225	24265 ChEBI	gluconate	+	carbon source
31225	17234 ChEBI	glucose	+	carbon source
31225	18403 ChEBI	L-arabitol	+	carbon source
31225	17306 ChEBI	maltose	+	carbon source
31225	29864 ChEBI	mannitol	+	carbon source
31225	28053 ChEBI	melibiose	+	carbon source
116417	17632 ChEBI	nitrate	-	reduction
116417	17632 ChEBI	nitrate	+	respiration
116417	16301 ChEBI	nitrite	-	reduction
31225	16634 ChEBI	raffinose	+	carbon source
31225	33942 ChEBI	ribose	+	carbon source
31225	17992 ChEBI	sucrose	+	carbon source
31225	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
116417	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
116417	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
116417	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
116417	catalase	-	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
116417	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116417	ornithine decarboxylase	-	4.1.1.17
116417	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
116417	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116417	-	+	-	-	-	+	-	+	-	-	+	+	+	-	-	+	+	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Patient	#Biopsy
#Host	#Human	-
#Host Body-Site	#Gastrointestinal tract	#Stomach

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
6157	gastric biopsies, human stomach mucosa	Kalix	Sweden	SWE	Europe
58172	Human stomach biopsy,mucosa of healthy individual	Kalix	Sweden	SWE	Europe
67770	Human stomach mucosa
116417	Human, Stomach mucosa	Kalix	Sweden	SWE	Europe

Taxonmaps

69479

Global distribution of 16S sequence LC480809 (>99% sequence identity) for Limosilactobacillus from Microbeatlas

Aquatic Samples	29
Soil Samples	3
Animal Samples	744
Plant Samples	12
Total Samples	788

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
116417	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM16083v1 assembly for Limosilactobacillus antri DSM 16041	scaffold	GCA_000160835	525309.3	645951838	525309	64.15
67770	ASM143547v1 assembly for Limosilactobacillus antri DSM 16041	contig	GCA_001435475	525309.8	2671180689	525309	60.96

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
31225	Lactobacillus antri 16S ribosomal RNA gene, complete sequence	AY253659	1520		227943
67770	Lactobacillus antri JCM 15950 gene for 16S ribosomal RNA, partial sequence	LC480809	1515		227943

GC content

@ref	GC-content (mol%)	Method
6157	44.9
67770	51.1	genome sequence analysis
67770	44.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Limosilactobacillus antri DSM 16041
NCBI: GCA_000160835

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	98.10	no
125439	motility	BacteriaNetⓘ	no	79.20	no
125439	gram_stain	BacteriaNetⓘ	positive	75.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus antri DSM 16041
PATRIC: 525309.8

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	93.31	yes
125438	anaerobic	anaerobicⓘ	no	67.28	no
125438	spore-forming	spore-formingⓘ	no	89.24	yes
125438	aerobic	aerobicⓘ	no	92.81	no
125438	thermophilic	thermophileⓘ	no	97.00	yes
125438	flagellated	motile2+ⓘ	no	92.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	In Silico Identification and Molecular Characterization of Lentilactobacillus hilgardii Antimicrobial Peptides with Activity Against Carbapenem-Resistant Acinetobacter baumannii.	Appel A, Velazco L, Alreja AB, LeClair K, Duggal AP, Vashee I, Taal AM, Gonzalez-Juarbe N, Fouts DE.	Antibiotics (Basel)	10.3390/antibiotics14101004	2025
	Insight into the Hydrolytic Selectivity of beta-Glucosidase to Enhance the Contents of Desired Active Phytochemicals in Medicinal Plants.	Kim YS, Ma JY.	Biomed Res Int	10.1155/2018/4360252	2018
Metabolism	Characterization of glycoside hydrolase family 11 xylanase from Streptomyces sp. strain J103; its synergetic effect with acetyl xylan esterase and enhancement of enzymatic hydrolysis of lignocellulosic biomass.	Marasinghe SD, Jo E, Hettiarachchi SA, Lee Y, Eom TY, Gang Y, Kang YH, Oh C.	Microb Cell Fact	10.1186/s12934-021-01619-x	2021
Pathogenicity	Immunostimulatory activity of lipoteichoic acid with three fatty acid residues derived from Limosilactobacillus antri JCM 15950^T.	Yamasaki-Yashiki S, Shiraishi T, Gyobu M, Sasaki H, Kunisawa J, Yokota S-i, Katakura Y.	Appl Environ Microbiol	10.1128/aem.01197-24	2024
	High productivity of immunostimulatory membrane vesicles of Limosilactobacillus antri using glycine.	Yamasaki-Yashiki S, Sakamoto Y, Nishimura K, Saika A, Ito T, Kunisawa J, Katakura Y.	Biosci Microbiota Food Health	10.12938/bmfh.2023-029	2024
	RNA-Based Anti-Inflammatory Effects of Membrane Vesicles Derived from Lactiplantibacillus plantarum.	Yamasaki-Yashiki S, Kawashima F, Saika A, Hosomi R, Kunisawa J, Katakura Y.	Foods	10.3390/foods13060967	2024
	Bacterial extracellular vesicles: biotechnological perspective for enhanced productivity.	Munoz-Echeverri LM, Benavides-Lopez S, Geiger O, Trujillo-Roldan MA, Valdez-Cruz NA.	World J Microbiol Biotechnol	10.1007/s11274-024-03963-7	2024
Enzymology	Functional Expression and Characterization of Acetyl Xylan Esterases CE Family 7 from Lactobacillus antri and Bacillus halodurans.	Kim MJ, Jang MU, Nam GH, Shin H, Song JR, Kim TJ	J Microbiol Biotechnol	10.4014/jmb.2001.01004	2020
Phylogeny	Lactobacillus gastricus sp. nov., Lactobacillus antri sp. nov., Lactobacillus kalixensis sp. nov. and Lactobacillus ultunensis sp. nov., isolated from human stomach mucosa.	Roos S, Engstrand L, Jonsson H	Int J Syst Evol Microbiol	10.1099/ijs.0.63083-0	2005

References

#6157	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16041
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#27551	IJSEM 77 2005 ( DOI 10.1099/ijs.0.63083-0 , PubMed 15653856 )
#31225	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27551
#37887	; Curators of the CIP;
#58172	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 48456
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116417	Collection of Institut Pasteur ; Curators of the CIP; CIP 109960
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Limosilactobacillus antri (DSM 16041, CCUG 48456, CIP 109960)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Murein

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000160835

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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