Name: Lactobacillus delbrueckii subsp. indicus DSM 15996
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6610

Type strain:

Species: Lactobacillus delbrueckii subsp. indicus

Culture col. no.: DSM 15996, LMG 22083, CCUG 51390, CIP 108704, JCM 15610, NCC 725

Strain history: CIP <- 2005, J.E. Germond, Nestlé Res. Cent., Lausanne, Switzerland: strain NCC 725

NCBI tax ID(s): 1423824 (strain), 249265 (subspecies)

SI-ID 129722

LMG 22083, DSM 15996, CCUG 51390, CIP 108704, BCRC 17507, CCRC 17507, JCM 15610

Other strains from Lactobacillus delbrueckii subsp. indicus

L. delbrueckii subsp. indicus CIP 104462
L. delbrueckii subsp. indicus CIP 102279

Section

Lactobacillus delbrueckii subsp. indicus DSM 15996 is a microaerophile, mesophilic bacterium that was isolated from traditional dairy fermented product .

mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Lactobacillus*
	Species	**Lactobacillus delbrueckii subsp. indicus**
	Full Scientific Name (LPSN)	Lactobacillus delbrueckii subsp. indicus Dellaglio et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #118878]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #118878]	Cell shape	rod-shaped

[Ref.: #118878]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %95.452

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6229]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #6229]

Culture medium growth

[Ref.: #6229]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6229]

Culture medium composition

expand / minimize

[Ref.: #38292]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #38292]

Culture medium growth

[Ref.: #38292]

Culture medium composition

expand / minimize

[Ref.: #118878]

Culture medium

CIP Medium 40

[Ref.: #118878]

Culture medium growth

[Ref.: #118878]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6229]		growth	37 °C
[Ref.: #38292]		growth	37 °C
[Ref.: #67770]		growth	42 °C
[Ref.: #118878]		growth	22-45 °C
[Ref.: #118878]	no	growth	10 °C

[Ref.: #6229]	Temperature range	mesophilic
[Ref.: #38292]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	thermophilic
[Ref.: #118878]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6229]	Oxygen tolerance	microaerophile
[Ref.: #118878]	Oxygen tolerance	facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %95
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #118878]	nitrate ChEBI	-	reduction
[Ref.: #118878]	nitrate ChEBI	+	respiration
[Ref.: #118878]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #118878]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #118878]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #118878]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #118878]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #118878]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #118878]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #118878]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #118878]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #6229]	14337	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
[Ref.: #118878]	11357	not determinedn.d.	-	-	-	-	+	-	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	+	+	+	+	-	+	-	+	-	+	-	-	-	+/-	-	-	-	+/-	+/-	+/-	+/-	-	-	-	-	-	-	+/-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #118878]	11401	-	-	-	-	-	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6229]	Sample type/isolated from	traditional dairy fermented product (Dahi type)
[Ref.: #6229]	Country	India
[Ref.: #6229]	Country ISO 3 Code	IND
[Ref.: #6229]	Continent	Asia

[Ref.: #59176]	Sample type/isolated from	Dairy fermented product
[Ref.: #59176]	Country	India
[Ref.: #59176]	Country ISO 3 Code	IND
[Ref.: #59176]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Indian dairy products

[Ref.: #118878]	Sample type/isolated from	Dairy fermented product
[Ref.: #118878]	Country	India
[Ref.: #118878]	Country ISO 3 Code	IND
[Ref.: #118878]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered

#Food production

#Dairy product

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC483566 (>99% sequence identity) for Lactobacillus delbrueckii from Microbeatlas

Aquatic Samples	6667
Soil Samples	2030
Animal Samples	50988
Plant Samples	973
Total Samples	60658

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6229]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #118878]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus delbrueckii subsp. indicus gene for 16S ribosomal RNA, partial sequence	LC483566	1453	ENA	249265 tax ID
[Ref.: #6229]	Lactobacillus delbrueckii subsp. indicus strain NCC725 16S ribosomal RNA gene, partial sequence	AY421720	1515	ENA	249265 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus delbrueckii subsp. indicus DSM 15996	GCA_001435795	scaffold	GenBank	1423824 tax ID
[Ref.: #67770]	Lactobacillus delbrueckii subsp. indicus JCM 15610	GCA_001189855	contig	GenBank	249265 tax ID
[Ref.: #66792]	Lactobacillus delbrueckii subsp. indicus strain JCM 15610	249265.8	plasmid	PATRIC	249265 tax ID	*
[Ref.: #66792]	Lactobacillus delbrueckii subsp. indicus strain JCM 15610	249265.7	plasmid	PATRIC	249265 tax ID	*
[Ref.: #66792]	Lactobacillus delbrueckii subsp. indicus strain JCM 15610	249265.3	wgs	PATRIC	249265 tax ID	*
[Ref.: #66792]	Lactobacillus delbrueckii subsp. indicus strain JCM 15610	249265.4	complete	PATRIC	249265 tax ID	*

[Ref.: #67770]	GC-content	49.5 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	51 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lactobacillus delbrueckii subsp. indicus strain JCM 15610 PATRIC: 249265.4
[Ref.: #69481]	spore-forming	no	95	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillus delbrueckii subsp. indicus JCM 15610 NCBI: GCA_001908415.1
[Ref.: #69480]	flagellated	no	98.068	no
[Ref.: #69480]	gram-positive	yes	95.879	no
[Ref.: #69480]	anaerobic	yes	55.054	yes
[Ref.: #69480]	aerobic	no	98.141	yes
[Ref.: #69480]	halophile	yes	81.719	no
[Ref.: #69480]	spore-forming	no	96.023	no
[Ref.: #69480]	glucose-util	yes	93.402	no
[Ref.: #69480]	thermophile	no	98.95	no
[Ref.: #69480]	motile	no	94.637	no
[Ref.: #69480]	glucose-ferment	yes	90.349	no

Availability in culture collections External links

[Ref.: #6229]

Culture collection no.

DSM 15996, LMG 22083, CCUG 51390, CIP 108704, JCM 15610, NCC 725

[Ref.: #76084]

SI-ID 129722

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus nasalidis sp. nov., isolated from the forestomach of a captive proboscis monkey (Nasalis larvatus).	Suzuki-Hashido N, Tsuchida S, Hayakawa T, Sakamoto M, Azumano A, Seino S, Matsuda I, Ohkuma M, Ushida K	Int J Syst Evol Microbiol	10.1099/ijsem.0.004787	2021	*
Phylogeny	Lactobacillus delbrueckii subsp. indicus subsp. nov., isolated from Indian dairy products.	Dellaglio F, Felis GE, Castioni A, Torriani S, Germond JE	Int J Syst Evol Microbiol	10.1099/ijs.0.63067-0	2005	*

References

#6229

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15996

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#38292 ; Curators of the CIP;
#59176 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 51390

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76084

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID129722.1 )

#118878 Collection of Institut Pasteur ; Curators of the CIP; CIP 108704
* These data were automatically processed and therefore are not curated

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Lactobacillus delbrueckii subsp. indicus strain JCM 15610

Lactobacillus delbrueckii subsp. indicus JCM 15610

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