Name: Ligilactobacillus equi DSM 15833
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 6604

Type strain:

Species: Ligilactobacillus equi

Culture col. no.: DSM 15833, ATCC BAA-261, CCUG 47129, CIP 107382, JCM 10991, KCTC 13921, YIT 0455

Strain history: CIP <- 2002, JCM <- M. Morotomi: strain YIT 0455

NCBI tax ID(s): 137357 (species)

SI-ID 100712

ATCC BAA-261, JCM 10991, KCTC 13921, CIP 107382, CCUG 47129, DSM 15833, LMG 21748, NCIMB 14042

Other strains from Ligilactobacillus equi

L. equi JCM 10992
L. equi JCM 10993
L. equi JCM 7690

Section

Ligilactobacillus equi DSM 15833 is a microaerophile, mesophilic, rod-shaped bacterium that was isolated from faeces of horses.

rod-shaped
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Ligilactobacillus*
	Species	**Ligilactobacillus equi**
	Full Scientific Name (LPSN)	Ligilactobacillus equi (Morotomi et al. 2002) Zheng et al. 2020

Synonym

Lactobacillus equi

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	positive
[Ref.: #119109]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #119109]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #119109]	Motility	no
[Ref.: #67771]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %96.13

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6047]

Culture medium

MRS MEDIUM (DSMZ Medium 11)

[Ref.: #6047]

Culture medium growth

[Ref.: #6047]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6047]

Culture medium composition

expand / minimize

[Ref.: #33784]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #33784]

Culture medium growth

[Ref.: #33784]

Culture medium composition

expand / minimize

[Ref.: #119109]

Culture medium

CIP Medium 40

[Ref.: #119109]

Culture medium growth

[Ref.: #119109]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6047]		growth	37 °C
[Ref.: #33784]		growth	37 °C
[Ref.: #57523]		growth	37 °C
[Ref.: #67770]		growth	37 °C
[Ref.: #67771]		growth	37 °C
[Ref.: #119109]		growth	30-45 °C
[Ref.: #119109]	no	growth	10 °C
[Ref.: #119109]	no	growth	15 °C
[Ref.: #119109]	no	growth	22 °C

[Ref.: #6047]	Temperature range	mesophilic
[Ref.: #33784]	Temperature range	mesophilic
[Ref.: #57523]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic
[Ref.: #119109]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6047]	Oxygen tolerance	microaerophile
[Ref.: #57523]	Oxygen tolerance	anaerobe
[Ref.: #67771]	Oxygen tolerance	microaerophile

[Ref.: #67771]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.995

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #119109]	nitrate ChEBI	-	reduction
[Ref.: #119109]	nitrate ChEBI	+	respiration
[Ref.: #119109]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #119109]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #119109]		acetoin ChEBI	+

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #119109]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119109]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #119109]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119109]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119109]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #119109]	10954	not determinedn.d.	-	-	-	+	-	-	-	-	-	+	+	+	+/-	-	+	-	-	+	+	-	-	+	-	+	+/-	+	-	+	+	+	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119109]	10314	-	-	-	-	-	+	+	-	-	-	-	+	+	+	-	-	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6047]	Sample type/isolated from	faeces of horses
[Ref.: #6047]	Country	Japan
[Ref.: #6047]	Country ISO 3 Code	JPN
[Ref.: #6047]	Continent	Asia

[Ref.: #57523]	Sample type/isolated from	Equine feces
[Ref.: #57523]	Country	Japan
[Ref.: #57523]	Country ISO 3 Code	JPN
[Ref.: #57523]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Horse feces

[Ref.: #67771]	Sample type/isolated from	From faeces of horses
[Ref.: #67771]	Country	Japan
[Ref.: #67771]	Country ISO 3 Code	JPN
[Ref.: #67771]	Continent	Asia

[Ref.: #119109]	Sample type/isolated from	Animal, Horse, feces
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Equidae (Horse)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC145558 (>99% sequence identity) for Ligilactobacillus equi subclade from Microbeatlas

Aquatic Samples	202
Soil Samples	307
Animal Samples	11428
Plant Samples	94
Total Samples	12031

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6047]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119109]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus equi gene for 16S rRNA, partial sequence	AB048833	1432	ENA	137357 tax ID
[Ref.: #6047]	Acropora digitifera mRNA for Vasa-related protein CnVAS1, partial cds	AB048853	343	ENA	70779 tax ID
[Ref.: #67771]	Lactobacillus equi gene for 16S ribosomal RNA, partial sequence, strain: JCM 10991	LC145558	1502	ENA	137357 tax ID
[Ref.: #20218]	Lactobacillus equi gene for 16S rRNA, partial sequence, strain: JCM 10991	AB289099	685	ENA	137357 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Ligilactobacillus equi DSM 15833 = JCM 10991	GCA_000615765	contig	GenBank	1423740 tax ID
[Ref.: #67771]	Ligilactobacillus equi DSM 15833 = JCM 10991	GCA_001435735	scaffold	GenBank	1423740 tax ID
[Ref.: #66792]	Lactobacillus equi DSM 15833 = JCM 10991	1423740.3	wgs	PATRIC	1423740 tax ID	*
[Ref.: #66792]	Lactobacillus equi JCM 10991	1236948.3	wgs	PATRIC	1423740 tax ID	*
[Ref.: #66792]	Ligilactobacillus equi DSM 15833	2660238440	draft	JGI IMG/M	1423740 tax ID	*
[Ref.: #66792]	Ligilactobacillus equi JCM 10991	2585427875	draft	JGI IMG/M	1423740 tax ID	*

[Ref.: #6047]	GC-content	38.9 mol%
[Ref.: #67770]	GC-content	38 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	39 mol%	genome sequence analysis
[Ref.: #67771]	GC-content	39.0 mol%	genome sequence analysis
[Ref.: #67771]	GC-content	38.0 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Lactobacillus equi JCM 10991 PATRIC: 1236948.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Lactobacillus equi DSM 15833 = JCM 10991 PATRIC: 1423740.3
[Ref.: #69480]	motile	no	94.499	yes
[Ref.: #69480]	gram-positive	yes	96.574	yes
[Ref.: #69480]	anaerobic	no	85.953	no
[Ref.: #69480]	halophile	yes	89.478	no
[Ref.: #69480]	spore-forming	no	94.424	yes
[Ref.: #69480]	thermophile	no	99.62	yes
[Ref.: #69480]	glucose-util	yes	92.213	no
[Ref.: #69480]	aerobic	no	97.767	yes
[Ref.: #69480]	flagellated	no	97.715	no
[Ref.: #69480]	glucose-ferment	yes	88.727	no

Availability in culture collections External links

[Ref.: #6047]

Culture collection no.

DSM 15833, ATCC BAA-261, CCUG 47129, CIP 107382, JCM 10991, KCTC 13921, YIT 0455

[Ref.: #76078]

SI-ID 100712

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Comparative Genomic Analysis Reveals Intestinal Habitat Adaptation of Ligilactobacillus equi Rich in Prophage and Degrading Cellulase.	Li Y, Liu C, Liu Q, Liu W	Molecules	10.3390/molecules27061867	2022	*
Phylogeny	Lactobacillus equi sp. nov., a predominant intestinal Lactobacillus species of the horse isolated from faeces of healthy horses.	Morotomi M, Yuki N, Kado Y, Kushiro A, Shimazaki T, Watanabe K, Yuyama T	Int J Syst Evol Microbiol	10.1099/00207713-52-1-211	2002	*

References

#6047

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15833

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#33784 ; Curators of the CIP;
#57523 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 47129

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#76078

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100712.1 )

#119109 Collection of Institut Pasteur ; Curators of the CIP; CIP 107382
* These data were automatically processed and therefore are not curated

Change proposal

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Lactobacillus equi JCM 10991

Lactobacillus equi DSM 15833 = JCM 10991

Change proposal

Change proposal