Lactobacillus psittaci (DSM 15354, CCUG 42378, CIP 106492)

Name: Lactobacillus psittaci (DSM 15354, CCUG 42378, CIP 106492)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 6594

Type strain

Strain Designation SVA B 1491/99, 1491

Culture col. no. DSM 15354 CCUG 42378 CIP 106492 SVA B 1491/99 KCTC 13905 3 more

NCBI tax ID(s) 1122152 116089

Special Collections DSMZ CCUG JCM KCTC CIP

History <- CIP <- CCUG <- I. Hansson; 1491/99 CIP 106492 <-- CCUG 42378 <-- I. Hansson 1491. CIP <- 2000, CCUG <- 1999, I. Hansson, SVA, Uppsala, Sweden: strain 1491

Links

Lactobacillus psittaci SVA B 1491/99 is a microaerophile, Gram-positive, rod-shaped bacterium that was isolated from lung of parrot.

Gram-positive rod-shaped microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 93899

LMG21594,CCUG 42378,CIP 106492,DSM 15354,KCTC 13905,JCM 11552

@ref 20215

Last LPSN update 2026-02-09 11:19:16

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Lactobacillaceae

Genus Lactobacillus

Species Lactobacillus psittaci

Full scientific name Lactobacillus psittaci Lawson et al. 2001

BacDive ID	Other strains from **Lactobacillus psittaci** (1)	Type strain
152831	L. psittaci CCUG 47731

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
122012	positive	rod-shaped
125438			93
125438	positive		91.568

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5869	MRS MEDIUM (DSMZ Medium 11)	Medium recipe at MediaDive	Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water
38631	MEDIUM 40- for Lactobacillus and Leuconostoc		Distilled water make up to (1000.000 ml);Man Rogosa Sharp agar (68.000 g)
122012	CIP Medium 40	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
5869	positive	growth	37
38631	positive	growth	37
55410	positive	growth	37-42
67770	positive	growth	37
122012	positive	growth	22-37
122012	negative	growth	10
122012	negative	growth	15
122012	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
55410	microaerophile
122012	facultative anaerobe
125439	microaerophile	97.1

Spore formation

@ref	Spore formation	Confidence
125438		94.373
125439		93.7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
122012	17632 ChEBI	nitrate	-	reduction
122012	17632 ChEBI	nitrate	+	respiration
122012	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
122012	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
122012	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
122012	catalase	-	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
122012	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122012	ornithine decarboxylase	-	4.1.1.17
122012	oxidase	-
68382	trypsin	-	3.4.21.4	from API zym
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	adipate degradation	100	2 of 2
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	acetate fermentation	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	teichoic acid biosynthesis	100	1 of 1
66794	coenzyme A metabolism	100	4 of 4
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	palmitate biosynthesis	81.82	18 of 22
66794	peptidoglycan biosynthesis	80	12 of 15
66794	ppGpp biosynthesis	75	3 of 4
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	glycolysis	70.59	12 of 17
66794	starch degradation	70	7 of 10
66794	vitamin B1 metabolism	69.23	9 of 13
66794	pyrimidine metabolism	66.67	30 of 45
66794	formaldehyde oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	flavin biosynthesis	66.67	10 of 15
66794	photosynthesis	64.29	9 of 14
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	purine metabolism	61.7	58 of 94
66794	phenylalanine metabolism	61.54	8 of 13
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	glycogen metabolism	60	3 of 5
66794	NAD metabolism	55.56	10 of 18
66794	oxidative phosphorylation	54.95	50 of 91
66794	pentose phosphate pathway	54.55	6 of 11
66794	metabolism of disaccharids	54.55	6 of 11
66794	glycogen biosynthesis	50	2 of 4
66794	suberin monomers biosynthesis	50	1 of 2
66794	sulfopterin metabolism	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	cysteine metabolism	50	9 of 18
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	butanoate fermentation	50	2 of 4
66794	tetrahydrofolate metabolism	50	7 of 14
66794	non-pathway related	50	19 of 38
66794	gluconeogenesis	50	4 of 8
66794	d-xylose degradation	45.45	5 of 11
66794	CO2 fixation in Crenarchaeota	44.44	4 of 9
66794	valine metabolism	44.44	4 of 9
66794	d-mannose degradation	44.44	4 of 9
66794	serine metabolism	44.44	4 of 9
66794	chorismate metabolism	44.44	4 of 9
66794	mevalonate metabolism	42.86	3 of 7
66794	propanol degradation	42.86	3 of 7
66794	citric acid cycle	42.86	6 of 14
66794	glutamate and glutamine metabolism	42.86	12 of 28
66794	methionine metabolism	42.31	11 of 26
66794	Entner Doudoroff pathway	40	4 of 10
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	urea cycle	38.46	5 of 13
66794	isoleucine metabolism	37.5	3 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	37.5	3 of 8
66794	ketogluconate metabolism	37.5	3 of 8
66794	isoprenoid biosynthesis	34.62	9 of 26
66794	L-lactaldehyde degradation	33.33	1 of 3
66794	degradation of hexoses	33.33	6 of 18
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	lipid A biosynthesis	33.33	3 of 9
66794	IAA biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	octane oxidation	33.33	1 of 3
66794	lipid metabolism	32.26	10 of 31
66794	degradation of pentoses	32.14	9 of 28
66794	leucine metabolism	30.77	4 of 13
66794	threonine metabolism	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	reductive acetyl coenzyme A pathway	28.57	2 of 7
66794	alanine metabolism	27.59	8 of 29
66794	proline metabolism	27.27	3 of 11
66794	lysine metabolism	26.19	11 of 42
66794	cyclohexanol degradation	25	1 of 4
66794	arginine metabolism	25	6 of 24
66794	lactate fermentation	25	1 of 4
66794	dTDPLrhamnose biosynthesis	25	2 of 8
66794	carnitine metabolism	25	2 of 8
66794	sulfate reduction	23.08	3 of 13
66794	nitrate assimilation	22.22	2 of 9
66794	glutathione metabolism	21.43	3 of 14
66794	tyrosine metabolism	21.43	3 of 14
66794	tryptophan metabolism	21.05	8 of 38
66794	histidine metabolism	20.69	6 of 29

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122012	-	+	-	-	-	-	-	-	-	-	+	+	+	-	-	+	+	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
122012	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	+/-	-	-	+	-	-	+	-	+	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Birds	-
#Host Body-Site	#Oral cavity and airways	#Lung

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
5869	lung of parrot			Sweden	SWE	Europe
55410	Parrot air sac,Anodorhynchus hyacinthinus	1999-06-01	Uppsala	Sweden	SWE	Europe
67770	Pulmonary air sacs of the hyacinth macaw lung
122012	Parrot, lung		Uppsala	Sweden	SWE	Europe

Taxonmaps

69479

Global distribution of 16S sequence LC311743 (>99% sequence identity) for Lactobacillus from Microbeatlas

Aquatic Samples	108
Soil Samples	81
Animal Samples	8011
Plant Samples	47
Total Samples	8247

Interaction and safety

Risk assessment

@ref	Pathogenicity animal	Biosafety level	Biosafety level comment
5869	yes, in single cases	1	Risk group (German classification) According to TRBA 466
122012		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM42590v1 assembly for Lactobacillus psittaci DSM 15354	scaffold	GCA_000425905	1122152.3	2523533622	1122152	72.9
67770	ASM143569v1 assembly for Lactobacillus psittaci DSM 15354	scaffold	GCA_001435695	1122152.4	2660238387	1122152	67.78

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
5869	Lactobacillus psittaci 16S rRNA gene	AJ272391	1421	116089
67770	Lactobacillus psittaci gene for 16S ribosomal RNA, partial sequence, strain: JCM 11552	LC311743	1499	1122152
124043	Lactobacillus psittaci gene for 16S rRNA, partial sequence, strain: JCM 11552.	AB289268	617	1122152

GC content

@ref	GC-content (mol%)	Method
67770	35.6	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Lactobacillus psittaci DSM 15354
NCBI: GCA_000425905

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	97.10	no
125439	gram_stain	BacteriaNetⓘ	positive	81.30	no
125439	motility	BacteriaNetⓘ	no	86.80	no
125439	spore_formation	BacteriaNetⓘ	no	93.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus psittaci DSM 15354
PATRIC: 1122152.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.57	no
125438	anaerobic	anaerobicⓘ	no	70.41	yes
125438	spore-forming	spore-formingⓘ	no	94.37	no
125438	aerobic	aerobicⓘ	no	97.07	no
125438	thermophilic	thermophileⓘ	no	95.50	yes
125438	flagellated	motile2+ⓘ	no	93.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus corticis sp. nov., isolated from hardwood bark.	Tohno M, Tanizawa Y, Kojima Y, Sakamoto M, Ohkuma M, Kobayashi H	Int J Syst Evol Microbiol	10.1099/ijsem.0.004882	2021
Phylogeny	Lactobacillus psittaci sp. nov., isolated from a hyacinth macaw (Anodorhynchus hyacinthinus).	Lawson PA, Wacher C, Hansson I, Falsen E, Collins MD	Int J Syst Evol Microbiol	10.1099/00207713-51-3-967	2001

References

#5869	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15354
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#38631	; Curators of the CIP;
#55410	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 42378
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122012	Collection of Institut Pasteur ; Curators of the CIP; CIP 106492
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Lactobacillus psittaci (DSM 15354, CCUG 42378, CIP 106492)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite tests

Enzymes

Pathway annotation

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000425905

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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