Name: Companilactobacillus mindensis DSM 14500
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 6592

Type strain:

Species: Companilactobacillus mindensis

Culture col. no.: DSM 14500, CCUG 48642, LMG 21932, TMW 1.80, JCM 12532, CIP 107874, LMG 21508, NBRC 107162

Strain history: CIP <- 2003, R.F. Vogel, Technol. Munich Univ., Freising, Germany <- M.A. Ehrmann, Freising Weihenstephan, Germany: strain TMW 1.80

NCBI tax ID(s): 1423770 (strain), 167481 (species)

SI-ID 94683

LMG 21508, DSM 14500, LMG 21932, CCUG 48642, JCM 12532, CIP 107874

Special Collections

Section

When using BacDive for research please cite our paper

Companilactobacillus mindensis DSM 14500 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from sourdough.

Gram-positive
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Lactobacillales*
	Family	*Lactobacillaceae*
	Genus	*Companilactobacillus*
	Species	**Companilactobacillus mindensis**
	Full Scientific Name (LPSN)	Companilactobacillus mindensis (Ehrmann et al. 2003) Zheng et al. 2020

Synonym

Lactobacillus mindensis

Information on morphological and physiological properties Morphology

[Ref.: #120958]	Gram stain	positive
[Ref.: #125438]	Gram stain	positive Confidence in %92.657

[Ref.: #120958]	Cell shape	rod-shaped

[Ref.: #120958]	Motility	no
[Ref.: #125438]	Motility	no Confidence in %93.5

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5377]

Culture medium

PEDIOCOCCUS DAMNOSUS MEDIUM (DSMZ Medium 231)

[Ref.: #5377]

Culture medium growth

[Ref.: #5377]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5377]

Culture medium composition

expand / minimize

[Ref.: #40724]

Culture medium

MEDIUM 40- for Lactobacillus and Leuconostoc

[Ref.: #40724]

Culture medium growth

[Ref.: #40724]

Culture medium composition

expand / minimize

[Ref.: #120958]

Culture medium

CIP Medium 40

[Ref.: #120958]

Culture medium growth

[Ref.: #120958]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #5377]		growth	30 °C
[Ref.: #40724]		growth	37 °C
[Ref.: #58268]		growth	30 °C
[Ref.: #67770]		growth	28 °C
[Ref.: #120958]		growth	15-37 °C
[Ref.: #120958]	no	growth	10 °C
[Ref.: #120958]	no	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #58268]	Oxygen tolerance	anaerobe
[Ref.: #120958]	Oxygen tolerance	facultative anaerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %99.2

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #120958]	nitrate ChEBI	-	reduction
[Ref.: #120958]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #120958]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #120958]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120958]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120958]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120958]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #120958]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #120958]	11136	not determinedn.d.	-	-	-	+	+	+	-	-	-	+	+/-	+	+/-	-	-	-	-	+/-	-	-	-	+/-	-	-	-	-	+/-	+	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+/-	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120958]	10717	-	-	+	+	-	+	+	+	-	-	+	+	+	+	-	-	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5377]	Sample type/isolated from	sourdough
[Ref.: #5377]	Geographic location (country and/or sea, region)	Minden
[Ref.: #5377]	Country	Germany
[Ref.: #5377]	Country ISO 3 Code	DEU
[Ref.: #5377]	Continent	Europe

[Ref.: #58268]	Sample type/isolated from	Industrial rye sourdough starter preparation (BRS)
[Ref.: #58268]	Geographic location (country and/or sea, region)	Minden
[Ref.: #58268]	Country	Germany
[Ref.: #58268]	Country ISO 3 Code	DEU
[Ref.: #58268]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Commercial sourdough

[Ref.: #120958]	Sample type/isolated from	Sourdough
[Ref.: #120958]	Country	Germany
[Ref.: #120958]	Country ISO 3 Code	DEU
[Ref.: #120958]	Continent	Europe
[Ref.: #120958]	Isolation date	1995
* marker position based on {}

Isolation sources categories

#Engineered

#Food production

#Fermented

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC383831 (>99% sequence identity) for Companilactobacillus mindensis from Microbeatlas

Aquatic Samples	92
Soil Samples	1
Animal Samples	120
Plant Samples	16
Total Samples	229

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5377]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120958]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Lactobacillus mindensis JCM 12532 gene for 16S ribosomal RNA, partial sequence	LC383831	1506	GenBank ENA	167481 tax ID
[Ref.: #20218]	Lactobacillus mindensis partial 23S rRNA gene and 16S-23S IGS, strain DSM 14500	AJ616016	695	GenBank ENA	167481 tax ID	*
[Ref.: #20218]	Lactobacillus mindensis strain DSM 14500 16S-23S ribosomal RNA large intergenic spacer, tRNA-Ile, and tRNA-Ala genes, complete sequence	AY839298	418	GenBank ENA	167481 tax ID	*
[Ref.: #20218]	Lactobacillus mindensis strain DSM 14500 16S-23S ribosomal RNA small intergenic spacer, complete sequence	AY839299	196	GenBank ENA	167481 tax ID	*
[Ref.: #20218]	Lactobacillus mindensis gene for 16S rRNA, partial sequence, strain: JCM 12532	AB289203	627	GenBank ENA	167481 tax ID	*
[Ref.: #20218]	Lactobacillus sp. TMW 1.80 16S rRNA gene, strain TMW 1.80	AJ313530	1544	GenBank ENA	167481 tax ID	*
[Ref.: #124043]	Lactobacillus mindensis gene for 16S rRNA, partial sequence, strain: NBRC 107162.	AB626076	1492	GenBank ENA	167481 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Companilactobacillus mindensis DSM 14500	GCA_001434275	scaffold	GenBank ENA	1423770 tax ID
[Ref.: #67770]	Companilactobacillus mindensis NBRC 107162	GCA_007992055	contig	GenBank ENA	167481 tax ID
[Ref.: #66792]	Lactobacillus mindensis DSM 14500	1423770.3	wgs	PATRIC	1423770 tax ID	*
[Ref.: #66792]	Lactobacillus mindensis strain NBRC 107162	167481.3	wgs	PATRIC	167481 tax ID	*
[Ref.: #66792]	Lactobacillus mindensis DSM 14500	2660238628	draft	JGI IMG/M	1423770 tax ID	*

[Ref.: #67770]	GC-content	38.2 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	37.5 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Lactobacillus mindensis DSM 14500 PATRIC: 1423770.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	92.657	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	86.291	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	88.198	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	95.369	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	96.971	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	93.5	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Companilactobacillus mindensis DSM 14500 NCBI: GCA_001434275
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	72.6
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	55.5
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	79.7
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	99.2

Availability in culture collections External links

[Ref.: #5377]

Culture collection no.

DSM 14500, CCUG 48642, LMG 21932, TMW 1.80, JCM 12532, CIP 107874, LMG 21508, NBRC 107162

[Ref.: #76066]

SI-ID 94683

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Lactobacillus heilongjiangensis sp. nov., isolated from Chinese pickle.	Gu CT, Li CY, Yang LJ, Huo GC	Int J Syst Evol Microbiol	10.1099/ijs.0.053355-0	2013	*
Phylogeny	Molecular analysis of sourdough reveals Lactobacillus mindensis sp. nov.	Ehrmann MA, Muller MRA, Vogel RF	Int J Syst Evol Microbiol	10.1099/ijs.0.02202-0	2003	*

References

#5377

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14500

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#40724 ; Curators of the CIP;
#58268 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 48642

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#76066

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID94683.1 )

#120958 Collection of Institut Pasteur ; Curators of the CIP; CIP 107874

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Lactobacillus mindensis DSM 14500

Companilactobacillus mindensis DSM 14500

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